Query 030400
Match_columns 178
No_of_seqs 220 out of 1165
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 21:23:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030400.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030400hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gp6_A Leucoanthocyanidin diox 100.0 1.2E-36 4E-41 252.7 12.6 167 10-176 4-180 (356)
2 3oox_A Putative 2OG-Fe(II) oxy 100.0 3.4E-30 1.2E-34 210.5 11.1 131 44-176 4-142 (312)
3 1w9y_A 1-aminocyclopropane-1-c 100.0 2.9E-29 1E-33 205.5 8.1 124 45-176 2-125 (319)
4 1dcs_A Deacetoxycephalosporin 100.0 1E-28 3.5E-33 201.6 8.9 120 45-176 3-130 (311)
5 1odm_A Isopenicillin N synthas 99.9 1E-27 3.5E-32 197.2 12.7 126 43-176 5-153 (331)
6 3on7_A Oxidoreductase, iron/as 99.9 1.9E-26 6.4E-31 185.7 12.1 113 45-176 2-117 (280)
7 2dbn_A Hypothetical protein YB 83.8 0.59 2E-05 39.4 2.7 56 43-103 97-152 (461)
8 4ay7_A Methylcobalamin\: coenz 79.5 6.1 0.00021 31.6 7.3 41 62-102 304-348 (348)
9 1m5a_B Insulin B chain; alpha 68.5 6 0.00021 20.2 2.9 19 62-80 9-27 (30)
10 3o2g_A Gamma-butyrobetaine dio 68.2 2.4 8.4E-05 34.7 2.2 52 46-103 122-173 (388)
11 1otj_A Alpha-ketoglutarate-dep 60.1 7.7 0.00026 29.9 3.6 52 44-102 15-66 (283)
12 2opi_A L-fuculose-1-phosphate 58.7 4.2 0.00014 30.3 1.8 36 46-85 125-160 (212)
13 2fk5_A Fuculose-1-phosphate al 53.6 8.6 0.00029 28.4 2.7 37 45-85 116-153 (200)
14 1e4c_P L-fuculose 1-phosphate 52.9 5.7 0.0002 29.6 1.7 36 46-85 122-157 (215)
15 1oih_A Putative alkylsulfatase 52.3 12 0.00041 29.2 3.5 53 44-103 25-78 (301)
16 1pvt_A Sugar-phosphate aldolas 52.2 9 0.00031 29.0 2.7 37 45-85 160-196 (238)
17 2irp_A Putative aldolase class 50.1 9.4 0.00032 28.2 2.5 36 45-85 138-176 (208)
18 2v9l_A Rhamnulose-1-phosphate 44.9 10 0.00036 29.4 2.1 36 46-85 179-214 (274)
19 3ocr_A Class II aldolase/adduc 42.5 14 0.00047 28.8 2.4 38 45-85 155-192 (273)
20 4f3y_A DHPR, dihydrodipicolina 42.3 20 0.0007 27.8 3.4 40 63-102 110-149 (272)
21 2rdq_A 1-deoxypentalenic acid 42.1 37 0.0013 25.8 4.9 36 66-102 22-57 (288)
22 1zav_A 50S ribosomal protein L 41.5 65 0.0022 23.2 5.9 39 62-100 9-48 (180)
23 3qy9_A DHPR, dihydrodipicolina 41.3 22 0.00076 27.1 3.4 41 62-102 88-128 (243)
24 3pvj_A Alpha-ketoglutarate-dep 41.3 19 0.00066 27.8 3.1 53 44-103 13-65 (277)
25 2do1_A Nuclear protein HCC-1; 40.4 43 0.0015 19.4 3.8 31 65-98 15-45 (55)
26 2j01_J 50S ribosomal protein L 40.4 67 0.0023 22.9 5.8 38 62-99 7-46 (173)
27 3ijp_A DHPR, dihydrodipicolina 39.6 26 0.00089 27.5 3.7 39 64-102 126-164 (288)
28 2opw_A Phyhd1 protein; double- 38.9 40 0.0014 25.7 4.7 37 66-103 6-42 (291)
29 3m0z_A Putative aldolase; MCSG 35.9 48 0.0016 25.3 4.4 38 61-99 172-210 (249)
30 3ghf_A Septum site-determining 34.7 59 0.002 21.8 4.4 40 45-88 46-86 (120)
31 4f21_A Carboxylesterase/phosph 34.4 83 0.0029 23.4 5.7 40 63-102 200-245 (246)
32 3jsy_A Acidic ribosomal protei 34.3 71 0.0024 23.7 5.2 38 62-99 6-44 (213)
33 3r1j_A Alpha-ketoglutarate-dep 34.3 36 0.0012 26.6 3.7 53 44-103 19-72 (301)
34 3m6y_A 4-hydroxy-2-oxoglutarat 33.2 53 0.0018 25.4 4.3 38 61-99 195-233 (275)
35 2a1x_A Phytanoyl-COA dioxygena 30.5 56 0.0019 25.1 4.3 36 67-103 26-61 (308)
36 1vm6_A DHPR, dihydrodipicolina 29.0 64 0.0022 24.4 4.2 44 49-99 57-101 (228)
37 3emr_A ECTD; double stranded b 28.2 75 0.0026 24.8 4.7 36 66-102 37-72 (310)
38 3pnt_A NAD+-glycohydrolase; gl 26.0 85 0.0029 23.6 4.2 35 43-85 207-241 (268)
39 1nx8_A CARC, carbapenem syntha 25.5 92 0.0032 23.4 4.6 48 44-102 16-63 (273)
40 1zei_A Insulin, B28Asp-X-MCR; 24.9 70 0.0024 18.3 2.9 19 62-80 9-27 (53)
41 3m4r_A Uncharacterized protein 24.9 31 0.0011 25.8 1.7 34 47-85 156-190 (222)
42 1dih_A Dihydrodipicolinate red 24.4 65 0.0022 24.8 3.5 40 63-102 109-148 (273)
43 3iz5_s 60S acidic ribosomal pr 23.9 1.5E+02 0.0053 23.4 5.7 38 62-99 12-50 (319)
44 3u5i_q A0, L10E, 60S acidic ri 23.8 1.1E+02 0.0039 24.1 4.9 38 62-99 9-47 (312)
45 2fct_A Syringomycin biosynthes 23.2 1.3E+02 0.0045 23.0 5.2 35 66-101 12-46 (313)
46 3eat_X Pyoverdine biosynthesis 22.5 71 0.0024 24.7 3.5 53 44-103 28-82 (293)
47 4f3y_A DHPR, dihydrodipicolina 22.4 1.6E+02 0.0055 22.6 5.5 44 49-99 77-121 (272)
48 2kqp_A Insulin; carbohydrate m 21.9 39 0.0013 21.4 1.5 20 62-81 9-28 (86)
49 2wfu_B Probable insulin-like p 21.6 38 0.0013 16.5 1.1 14 63-77 9-22 (26)
50 2hbt_A EGL nine homolog 1; pro 21.5 1.3E+02 0.0043 22.7 4.6 35 65-100 16-50 (247)
No 1
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*
Probab=100.00 E-value=1.2e-36 Score=252.73 Aligned_cols=167 Identities=29% Similarity=0.554 Sum_probs=139.1
Q ss_pred chhHHHHHhCCCCCCCCCccCCCCCCCCCCC---CC---CCCCCceeecCCCCCCcc--hHHHHHHHHHHHHhcceEEEe
Q 030400 10 VPCVQELVKNPMLVVPPRYIRPDQDSPINSD---DT---LISQIPVIDMQSLLSEES--MDSELAKLDFACKEWGFFQLV 81 (178)
Q Consensus 10 ~~~~~~l~~~~~~~~p~~~v~p~~~~~~~~~---~~---~~~~iPvIDls~l~~~~~--~~~~~~~l~~A~~~~GFf~l~ 81 (178)
+++||+|+++|+..||++|++|.++++.... .. ...+||||||+.+.+++. +.+++++|++||++||||||+
T Consensus 4 ~~~v~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~ 83 (356)
T 1gp6_A 4 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLI 83 (356)
T ss_dssp CCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred cccHHHHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEe
Confidence 5679999999999999999999888765321 00 124699999999875543 345789999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHhhcccCC--CCccccccccccccccCCCccccccceeCCCCCCCCCCCCCCcc
Q 030400 82 NHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQHP--GDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPP 159 (178)
Q Consensus 82 nHGI~~~~~~~~~~~a~~FF~lp~e~K~~~~~~~--~~~~GY~~~~~~~~~~~~d~~E~~~~~~~p~~~~~~n~wP~~~~ 159 (178)
||||+.++++++++++++||+||.|+|+++.... ..++||+........+..||+|+|+++..|.....+|.||+.++
T Consensus 84 nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~~~ 163 (356)
T 1gp6_A 84 NHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPS 163 (356)
T ss_dssp SCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSST
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCCcch
Confidence 9999999999999999999999999999997653 36789987654444567899999999876643356899999999
Q ss_pred chHHHHHHHHHHHhhhh
Q 030400 160 LLRFSLFVLDMDLQTKR 176 (178)
Q Consensus 160 ~fr~~~~~y~~~~~~~~ 176 (178)
+||+++++|+++|.++.
T Consensus 164 ~fr~~~~~y~~~~~~l~ 180 (356)
T 1gp6_A 164 DYIEATSEYAKCLRLLA 180 (356)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 99999999999999874
No 2
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15}
Probab=99.96 E-value=3.4e-30 Score=210.48 Aligned_cols=131 Identities=18% Similarity=0.243 Sum_probs=108.2
Q ss_pred CCCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhcccCCCCcccccc
Q 030400 44 ISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQHPGDVEGFGQ 123 (178)
Q Consensus 44 ~~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~lp~e~K~~~~~~~~~~~GY~~ 123 (178)
+.+||||||+.+.+ .+++++++|++||++||||||+||||+.++++++++++++||+||.|+|+++.......+||.+
T Consensus 4 ~~~iPvIDls~~~~--~~~~~~~~l~~A~~~~GFf~v~nHGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~Gy~~ 81 (312)
T 3oox_A 4 TSAIDPVSFSLYAK--DFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIP 81 (312)
T ss_dssp CCSSCCEETHHHHH--CHHHHHHHHHHHHHHHSEEEEESCCSCHHHHHHHHHHHHHHHTSCHHHHGGGBSSGGGTSEEEC
T ss_pred CCCCCeEEChHhcc--cHHHHHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHhhhccCCCCcccccc
Confidence 46799999998743 3456899999999999999999999999999999999999999999999999765445789976
Q ss_pred cccc--ccccCCCccccccceeC-CC-----CCCCCCCCCCCccchHHHHHHHHHHHhhhh
Q 030400 124 AFVV--SEEQKLDWADIFSMITL-PV-----HLRKPHLFPKLPPLLRFSLFVLDMDLQTKR 176 (178)
Q Consensus 124 ~~~~--~~~~~~d~~E~~~~~~~-p~-----~~~~~n~wP~~~~~fr~~~~~y~~~~~~~~ 176 (178)
.+.. ......||+|.|+++.. +. ....+|.||+.+|+||+++++|+++|.++.
T Consensus 82 ~g~e~~~~~~~~D~kE~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~ 142 (312)
T 3oox_A 82 FGVETAKGADHYDLKEFWHMGRDLPPGHRFRAHMADNVWPAEIPAFKHDVSWLYNSLDGMG 142 (312)
T ss_dssp CCCCCSTTSCSCCCCEEEEECCCCCTTCGGGGTSCCCCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred ccceecCCCCCCCceeeeEeecCCCcCCcchhccCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 4432 22346899999988642 21 124579999999999999999999998874
No 3
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X
Probab=99.96 E-value=2.9e-29 Score=205.49 Aligned_cols=124 Identities=23% Similarity=0.454 Sum_probs=104.7
Q ss_pred CCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhcccCCCCccccccc
Q 030400 45 SQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQHPGDVEGFGQA 124 (178)
Q Consensus 45 ~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~lp~e~K~~~~~~~~~~~GY~~~ 124 (178)
.+||||||+.+. +..+.+++++|++||++||||||+||||+.++++++++++++||+||.|+|+++... .+||...
T Consensus 2 ~~iPvIDls~l~-~~~~~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~~~~~---~~Gy~~~ 77 (319)
T 1w9y_A 2 ENFPIISLDKVN-GVERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQRFKELVA---SKALEGV 77 (319)
T ss_dssp CCCCEEEGGGGG-STTHHHHHHHHHHHHHHTSEEEEESCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTTC
T ss_pred CCCCEEECcccC-cccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccC---CCCCCcc
Confidence 469999999875 333556899999999999999999999999999999999999999999999998542 3478654
Q ss_pred cccccccCCCccccccceeCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhh
Q 030400 125 FVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLRFSLFVLDMDLQTKR 176 (178)
Q Consensus 125 ~~~~~~~~~d~~E~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~y~~~~~~~~ 176 (178)
.. ..+..||+|.|+++..|. ..+|.||+.+|+||+++++|+++|.++.
T Consensus 78 ~~--e~~~~d~ke~~~~~~~p~--~~~~~wP~~~~~fr~~~~~y~~~~~~l~ 125 (319)
T 1w9y_A 78 QA--EVTDMDWESTFFLKHLPI--SNISEVPDLDEEYREVMRDFAKRLEKLA 125 (319)
T ss_dssp CC--CGGGCCCCEEEEEEEESC--CGGGGCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cc--cCCCCChhhheeeecCCc--ccccccccchhHHHHHHHHHHHHHHHHH
Confidence 32 235679999999987653 3478999999999999999999999874
No 4
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A*
Probab=99.95 E-value=1e-28 Score=201.63 Aligned_cols=120 Identities=19% Similarity=0.185 Sum_probs=95.7
Q ss_pred CCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhcCC-HHHHhhcccCC-CCccccc
Q 030400 45 SQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLS-MEEKKKYWQHP-GDVEGFG 122 (178)
Q Consensus 45 ~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~lp-~e~K~~~~~~~-~~~~GY~ 122 (178)
..||||||+.+.+++.. ++|++||++||||||+||||+.++++++++++++||+|| .|+|+++.... ...+||.
T Consensus 3 ~~iPvIDls~l~~~~~~----~~l~~A~~~~GFf~l~nHGi~~~l~~~~~~~~~~fF~lP~~e~K~~~~~~~~~~~~Gy~ 78 (311)
T 1dcs_A 3 TTVPTFSLAELQQGLHQ----DEFRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRAVTSPVPTMRRGFT 78 (311)
T ss_dssp CCCCEEEHHHHHTTCSH----HHHHHHHHHTCEEEEESSSCCHHHHHHHHHHHHHHHHHCCHHHHHHTBCSSCCSSSEEE
T ss_pred CCCcEEEchhhcCCCHH----HHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCcHHHhHHhhccCCCCCCcee
Confidence 46999999987554432 399999999999999999999999999999999999999 99999997753 4678998
Q ss_pred ccccc------ccccCCCccccccceeCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhh
Q 030400 123 QAFVV------SEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLRFSLFVLDMDLQTKR 176 (178)
Q Consensus 123 ~~~~~------~~~~~~d~~E~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~y~~~~~~~~ 176 (178)
..... ...+..||+|.|+++.. +|.|| +|+||+++++|+++|.++.
T Consensus 79 ~~~~e~~~~~~~~~~~~d~~E~~~~~~~------~n~wP--~~~fr~~~~~y~~~~~~l~ 130 (311)
T 1dcs_A 79 GLESESTAQITNTGSYSDYSMCYSMGTA------DNLFP--SGDFERIWTQYFDRQYTAS 130 (311)
T ss_dssp EC-----------------CEEEEECSS------SCCCS--CHHHHHHHHHHHHHHHHHH
T ss_pred eccccccccccCCCCCCCcceeeeccCC------CCCCC--ChHHHHHHHHHHHHHHHHH
Confidence 76432 22457899999998853 58999 8999999999999999874
No 5
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ...
Probab=99.95 E-value=1e-27 Score=197.25 Aligned_cols=126 Identities=17% Similarity=0.232 Sum_probs=102.8
Q ss_pred CCCCCceeecCCCCCCcc--hHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHH-hcCCHHHHhhcccCCCCcc
Q 030400 43 LISQIPVIDMQSLLSEES--MDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGF-FNLSMEEKKKYWQHPGDVE 119 (178)
Q Consensus 43 ~~~~iPvIDls~l~~~~~--~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~F-F~lp~e~K~~~~~~~~~~~ 119 (178)
+...||||||+.+.+++. +.+++++|++||++||||||+|||| +++++++++++| |+||.|+|+++.. +
T Consensus 5 ~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFf~v~nHGi---l~~~~~~~~~~F~F~lP~eeK~~~~~-----~ 76 (331)
T 1odm_A 5 SKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGI---NVQRLSQKTKEFHMSITPEEKWDLAI-----R 76 (331)
T ss_dssp CBCCCCEEECGGGGSSCHHHHHHHHHHHHHHHHTTSEEEEESCCC---CHHHHHHHHHHHHHHCCHHHHHHHBC-----T
T ss_pred cCCCCCEEEchHhcCCChHHHHHHHHHHHHHHHhCCEEEEEccce---eHHHHHHHHHhccCCCCHHHHHhhhh-----c
Confidence 346799999999875542 3458899999999999999999999 999999999999 9999999999965 5
Q ss_pred cccccccc--cc------ccCCCccccccceeCCC----------CCCCCCCCCCC--ccchHHHHHHHHHHHhhhh
Q 030400 120 GFGQAFVV--SE------EQKLDWADIFSMITLPV----------HLRKPHLFPKL--PPLLRFSLFVLDMDLQTKR 176 (178)
Q Consensus 120 GY~~~~~~--~~------~~~~d~~E~~~~~~~p~----------~~~~~n~wP~~--~~~fr~~~~~y~~~~~~~~ 176 (178)
||.+.... .. ....||+|.|+++..+. ...++|.||+. +|+||+++++|+++|.++.
T Consensus 77 Gy~~~~~e~~~~~~~~~~~~~~d~kE~~~~~~~~~~~~p~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~ 153 (331)
T 1odm_A 77 AYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLS 153 (331)
T ss_dssp TTCTTCTTCSSSEEECCBTTTBCCEEEEECCTTCCTTSHHHHTTCTTCCCCCCCCTTTSTTHHHHHHHHHHHHHHHH
T ss_pred CCCcCCccccccccccccCCCCChhheEecccCCccccccccccccccCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 77654322 11 14679999999885321 12458999987 9999999999999999874
No 6
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}
Probab=99.94 E-value=1.9e-26 Score=185.73 Aligned_cols=113 Identities=21% Similarity=0.306 Sum_probs=92.9
Q ss_pred CCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhcCCHHHHhhcccCCCCccccccc
Q 030400 45 SQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNLSMEEKKKYWQHPGDVEGFGQA 124 (178)
Q Consensus 45 ~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~lp~e~K~~~~~~~~~~~GY~~~ 124 (178)
++||||||+.. +.+++|.+||++||||||+||||+.++++++++++++||+| |+|+++...+...+||...
T Consensus 2 ~~IPvIDls~~-------~~~~~l~~A~~~~GFF~v~nHGi~~~li~~~~~~~~~FF~l--e~K~k~~~~~~~~~GY~~~ 72 (280)
T 3on7_A 2 MKLETIDYRAA-------DSAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNS--EAKNEFMFNRETHDGFFPA 72 (280)
T ss_dssp --CCEEETTST-------THHHHHHHHHHHHSEEEEESCSSCHHHHHHHHHHHHHHHTS--GGGGGGBCCTTTCCEEECC
T ss_pred CCCCEEECCCh-------hHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHhhh--HHHHHhccCCCCCCccccC
Confidence 46999999863 25789999999999999999999999999999999999998 8999997766668999765
Q ss_pred c-cc--ccccCCCccccccceeCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhh
Q 030400 125 F-VV--SEEQKLDWADIFSMITLPVHLRKPHLFPKLPPLLRFSLFVLDMDLQTKR 176 (178)
Q Consensus 125 ~-~~--~~~~~~d~~E~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~y~~~~~~~~ 176 (178)
. .. ......||+|.|++. .||..+++||+++++|+++|.++.
T Consensus 73 ~~~e~~~~~~~~D~kE~~~~~----------p~~~~p~~fr~~~~~y~~~~~~l~ 117 (280)
T 3on7_A 73 SISETAKGHTVKDIKEYYHVY----------PWGRIPDSLRANILAYYEKANTLA 117 (280)
T ss_dssp C--------CCCCSCEEEEEC----------TTSCCCGGGHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCcccHHHHHhcC----------CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4 11 223467999998764 277778999999999999999875
No 7
>2dbn_A Hypothetical protein YBIU; alpha/beta structure, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2dbi_A 2csg_A*
Probab=83.79 E-value=0.59 Score=39.45 Aligned_cols=56 Identities=11% Similarity=0.071 Sum_probs=43.5
Q ss_pred CCCCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhcC
Q 030400 43 LISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNL 103 (178)
Q Consensus 43 ~~~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~l 103 (178)
....||.||++.+.++. +.++..+.+++.|++.|.|+ ||.+...+..+...+|.+.
T Consensus 97 G~~~iP~i~f~di~~~~----~s~~~~~~ir~rG~vVIRgv-vp~e~A~~~~~~~~~yl~~ 152 (461)
T 2dbn_A 97 GDAVWPVLSYADIKAGH----VTAEQREQIKRRGCAVIKGH-FPREQALGWDQSMLDYLDR 152 (461)
T ss_dssp TCCSSCEEEHHHHHHTC----CCHHHHHHHHHHSEEEEETS-SCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcceecHHHhcCCC----CCHHHHHHHHhccEEEECCC-CCHHHHHHHHHHHHHHHHh
Confidence 34679999998764332 22455678899999999998 9999999988888888743
No 8
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=79.52 E-value=6.1 Score=31.63 Aligned_cols=41 Identities=15% Similarity=0.018 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcceEEEecCCCC----HHHHHHHHHHHHHHhc
Q 030400 62 DSELAKLDFACKEWGFFQLVNHGVS----SAFLEKLKKEVQGFFN 102 (178)
Q Consensus 62 ~~~~~~l~~A~~~~GFf~l~nHGI~----~~~~~~~~~~a~~FF~ 102 (178)
+++.+++.+.++.-||..-.+|||+ .+-+..+++++++||+
T Consensus 304 e~i~~~v~~~l~~~g~I~~~Ghgi~p~tp~env~a~v~av~ey~A 348 (348)
T 4ay7_A 304 DKIKAEAKEALEGGIDVLAPGCGIAPMTPLENVKALVAARDEFYA 348 (348)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSSCCTTCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCCEEeCCCccCCCCCHHHHHHHHHHHHHhcC
Confidence 3456677778888898877899974 5889999999999985
No 9
>1m5a_B Insulin B chain; alpha helices, beta sheets, 3(10) helices, disulphide bridge hormone-growth factor complex; 1.20A {Sus scrofa} SCOP: g.1.1.1 PDB: 1aph_B 1b18_B 1b19_B 1b2a_B 1b2b_B 1b2c_B 1b2d_B 1b2e_B 1b2f_B 1b2g_B 1bph_B 1cph_B 1dph_B 1b17_B 1mpj_B 1wav_B 1zni_B 2a3g_B 2bn1_B 2bn3_B ...
Probab=68.50 E-value=6 Score=20.21 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhcceEEE
Q 030400 62 DSELAKLDFACKEWGFFQL 80 (178)
Q Consensus 62 ~~~~~~l~~A~~~~GFf~l 80 (178)
.++++.|.-.|.+-||||.
T Consensus 9 s~LVdaL~~vCgdRGF~~~ 27 (30)
T 1m5a_B 9 SHLVEALYLVCGERGFFYT 27 (30)
T ss_dssp HHHHHHHHHHHGGGCEEEC
T ss_pred HHHHHHHHHHhccCccccC
Confidence 3578899999999999983
No 10
>3o2g_A Gamma-butyrobetaine dioxygenase; gamma-butyrobetaine hydroxylase, 2-OXOG dioxygenase 1, oxidoreductase, structural genomics; HET: OGA NM2; 1.78A {Homo sapiens} PDB: 3ms5_A* 3n6w_A
Probab=68.16 E-value=2.4 Score=34.75 Aligned_cols=52 Identities=21% Similarity=0.194 Sum_probs=39.0
Q ss_pred CCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhcC
Q 030400 46 QIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNL 103 (178)
Q Consensus 46 ~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~l 103 (178)
++|.||++.+... ++...++.+++.++|++.+.|-.++.+. ..+.++.|-.+
T Consensus 122 ~~~~~~~~~~l~~---d~~~~~~~~~l~~~Gvv~frg~~~~~~~---~~~~a~~~G~l 173 (388)
T 3o2g_A 122 QLPTLDFEDVLRY---DEHAYKWLSTLKKVGIVRLTGASDKPGE---VSKLGKRMGFL 173 (388)
T ss_dssp CCCEEEHHHHHHC---HHHHHHHHHHHHHHSEEEEECCCSSTTH---HHHHHHHHSCC
T ss_pred CCCccCHHHHhcC---HHHHHHHHHHHHhcCEEEEeCCCCCHHH---HHHHHHHhCCC
Confidence 6899999875422 2467889999999999999999887553 44566676544
No 11
>1otj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly roll motif, alpha ketoglutarate-dependent dioxygenase, oxidoreductase; 1.90A {Escherichia coli} SCOP: b.82.2.5 PDB: 1gqw_A* 1os7_A* 1gy9_A
Probab=60.08 E-value=7.7 Score=29.92 Aligned_cols=52 Identities=21% Similarity=0.192 Sum_probs=37.5
Q ss_pred CCCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhc
Q 030400 44 ISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFN 102 (178)
Q Consensus 44 ~~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~ 102 (178)
..+|+-||++...+ ++..++|.+++.++|++.+.|-.++.+.. .+.++.|=.
T Consensus 15 Gaei~gvdl~~~l~----~~~~~~l~~~l~~~Gvv~frg~~~~~~~~---~~~~~~~G~ 66 (283)
T 1otj_A 15 GAQISGADLTRPLS----DNQFEQLYHAVLRHQVVFLRDQAITPQQQ---RALAQRFGE 66 (283)
T ss_dssp CEEEESCCSSSCCC----HHHHHHHHHHHHHHSEEEECSCCCCHHHH---HHHHHTTSC
T ss_pred eEEEECCCcCccCC----HHHHHHHHHHHHHCCEEEECCCCCCHHHH---HHHHHHhCC
Confidence 45677788887432 23578999999999999999988876644 345556543
No 12
>2opi_A L-fuculose-1-phosphate aldolase; L-fuculose-1-phosphate aldolas structural genomics, PSI-2, protein structure initiative; 2.50A {Bacteroides thetaiotaomicron}
Probab=58.71 E-value=4.2 Score=30.34 Aligned_cols=36 Identities=25% Similarity=0.134 Sum_probs=27.7
Q ss_pred CCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCC
Q 030400 46 QIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGV 85 (178)
Q Consensus 46 ~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI 85 (178)
.||+++..... ..++++.+.+++.+.-.+.|.|||+
T Consensus 125 ~v~~~~y~~~g----~~~la~~i~~~l~~~~avll~nHG~ 160 (212)
T 2opi_A 125 EIPVIPYYRPG----SPELAKAVVEAMLKHNSVLLTNHGQ 160 (212)
T ss_dssp CCCEECCCCTT----CHHHHHHHHHHTSSCSEEEETTTEE
T ss_pred CeEEEcCCCCC----cHHHHHHHHHHhccCCEEEEcCCCc
Confidence 69999876431 2357788888998888889999996
No 13
>2fk5_A Fuculose-1-phosphate aldolase; class II aldolase, metal binding, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2flf_A
Probab=53.56 E-value=8.6 Score=28.40 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=27.3
Q ss_pred CCCcee-ecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCC
Q 030400 45 SQIPVI-DMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGV 85 (178)
Q Consensus 45 ~~iPvI-Dls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI 85 (178)
..||++ ++... + ..++++.+.+++.+.-.+.|.|||+
T Consensus 116 ~~ip~~~~y~~~--g--~~ela~~i~~~l~~~~avll~nHG~ 153 (200)
T 2fk5_A 116 KEVPVLAPKTVS--A--TEEAALSVAEALREHRACLLRGHGA 153 (200)
T ss_dssp SCEEEECCSCCS--S--SHHHHHHHHHHHHHCSEEEETTTEE
T ss_pred CCceEecCCCCC--C--cHHHHHHHHHHhCcCCEEEECCCCc
Confidence 368998 66532 1 2357788888888888899999995
No 14
>1e4c_P L-fuculose 1-phosphate aldolase; aldolase (class II), bacterial L-fucose metabolism; 1.66A {Escherichia coli} SCOP: c.74.1.1 PDB: 1fua_A 2fua_A 3fua_A 4fua_A* 1dzv_P 1e4b_P 1e47_P* 1e48_P* 1dzz_P 1e46_P 1dzu_P 1dzy_P 1dzx_P 1dzw_P 1e49_P 1e4a_P
Probab=52.92 E-value=5.7 Score=29.63 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=27.4
Q ss_pred CCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCC
Q 030400 46 QIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGV 85 (178)
Q Consensus 46 ~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI 85 (178)
.||+++..... ..++++.+.+++.+.-.+.|.|||+
T Consensus 122 ~ip~~~y~~~g----~~~la~~i~~~l~~~~avll~nHG~ 157 (215)
T 1e4c_P 122 SIPCAPYATFG----TRELSEHVALALKNRKATLLQHHGL 157 (215)
T ss_dssp CBCEECCCCTT----CHHHHHHHHHHTSSCSEEEETTTEE
T ss_pred CcceeeCCCCC----cHHHHHHHHHHhccCCEEEEcCCCc
Confidence 68888876431 2357788888988888888999996
No 15
>1oih_A Putative alkylsulfatase ATSK; non-heme Fe(II) alphaketoglutarate dependent dioxygenase, jelly roll, oxidoreductase; 1.89A {Pseudomonas putida} SCOP: b.82.2.5 PDB: 1oii_A* 1oij_B* 1vz4_A 1vz5_A 1oik_A* 1oij_A* 1oij_C*
Probab=52.34 E-value=12 Score=29.17 Aligned_cols=53 Identities=6% Similarity=-0.024 Sum_probs=37.9
Q ss_pred CCCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCC-CCHHHHHHHHHHHHHHhcC
Q 030400 44 ISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHG-VSSAFLEKLKKEVQGFFNL 103 (178)
Q Consensus 44 ~~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHG-I~~~~~~~~~~~a~~FF~l 103 (178)
..+|+-||++...+ ++..++|++++.++|++.+.|-. ++.+ ...+.++.|-.+
T Consensus 25 Gaei~gvdl~~~l~----~~~~~~l~~~l~~~Gvv~fRg~~~l~~~---~~~~~~~~fG~l 78 (301)
T 1oih_A 25 GAEIRGVKLSPDLD----AATVEAIQAALVRHKVIFFRGQTHLDDQ---SQEGFAKLLGEP 78 (301)
T ss_dssp CEEEESCCCCTTCC----HHHHHHHHHHHHHHSEEEECCCTTCCHH---HHHHHHHTTSCB
T ss_pred ceEEeCCCccccCC----HHHHHHHHHHHHHCCEEEECCCCCCCHH---HHHHHHHHhCCC
Confidence 35577788886431 23578999999999999999987 8854 455566666443
No 16
>1pvt_A Sugar-phosphate aldolase; structural genomics, PSI, protein initiative, midwest center for structural genomics, MCSG; 2.50A {Thermotoga maritima} SCOP: c.74.1.1
Probab=52.18 E-value=9 Score=29.01 Aligned_cols=37 Identities=16% Similarity=0.019 Sum_probs=28.0
Q ss_pred CCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCC
Q 030400 45 SQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGV 85 (178)
Q Consensus 45 ~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI 85 (178)
..||++++... + ..++++.+.+++++.-.+.+.|||+
T Consensus 160 ~~v~~~~y~~~--g--~~ela~~i~~~l~~~~avll~nHG~ 196 (238)
T 1pvt_A 160 QGISVVEFEKP--G--SVELGLKTVEKSEGKDAVLWDKHGV 196 (238)
T ss_dssp SCCEEECCCST--T--CHHHHHHHHHHTSSCSEEEETTSCE
T ss_pred CCceEecCCCC--C--cHHHHHHHHHHhccCCEEEEcCCCc
Confidence 46889887543 2 2357788888898888899999996
No 17
>2irp_A Putative aldolase class 2 protein AQ_1979; aldehyde, enzymatic mechanism; 2.40A {Aquifex aeolicus}
Probab=50.10 E-value=9.4 Score=28.20 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=25.8
Q ss_pred CCCceeecCCCCCCcchHHHHHHHHHHHHhcc---eEEEecCCC
Q 030400 45 SQIPVIDMQSLLSEESMDSELAKLDFACKEWG---FFQLVNHGV 85 (178)
Q Consensus 45 ~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~G---Ff~l~nHGI 85 (178)
..||+++.. + ...++++.+.+++.+.+ .+.|.|||+
T Consensus 138 ~~vp~~~~~----~-g~~~La~~i~~~l~~~~~~~avll~nHG~ 176 (208)
T 2irp_A 138 IKIPIFPNE----Q-NIPLLAKEVENYFKTSEDKYGFLIRGHGL 176 (208)
T ss_dssp CEEEEECCC----S-CHHHHHHHHHHHHHHCSCCSCEEETTTEE
T ss_pred cceeeecCC----C-CHHHHHHHHHHHHhcCCCceEEEEcCCCC
Confidence 368887753 1 23457888888888765 788899996
No 18
>2v9l_A Rhamnulose-1-phosphate aldolase; entropy index, metal-binding, oligomerization, zinc, lyase, class II, cytoplasm; HET: PGO; 1.23A {Escherichia coli} PDB: 2uyv_A* 1ojr_A 2v9g_A* 1gt7_A* 2v9n_A* 2uyu_A* 2v9m_A* 2v9o_A 2v9e_A 2v9f_A 2v9i_A 2v29_A 2v2a_A* 2v2b_A
Probab=44.89 E-value=10 Score=29.41 Aligned_cols=36 Identities=11% Similarity=0.051 Sum_probs=27.3
Q ss_pred CCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCC
Q 030400 46 QIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGV 85 (178)
Q Consensus 46 ~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI 85 (178)
.||++++... + ..++++.+.+++.+.-.+.+.|||+
T Consensus 179 ~v~v~~y~~~--g--~~ela~~i~~~l~~~~avll~nHG~ 214 (274)
T 2v9l_A 179 GVGILPWMVP--G--TDAIGQATAQEMQKHSLVLWPFHGV 214 (274)
T ss_dssp CEEECCCCCS--S--SHHHHHHHHHHHTTCSEEEETTTEE
T ss_pred ceeEecCCCC--C--CHHHHHHHHHHHccCCEEEEcCCCc
Confidence 5888876532 2 2357788889998888899999996
No 19
>3ocr_A Class II aldolase/adducin domain protein; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, lyase; 1.95A {Pseudomonas syringae PV}
Probab=42.51 E-value=14 Score=28.82 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=28.0
Q ss_pred CCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCC
Q 030400 45 SQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGV 85 (178)
Q Consensus 45 ~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI 85 (178)
..||++|+..+. ...++++.|.+++.+.-.+.|.|||+
T Consensus 155 g~v~~~~y~~~~---~~~el~~~i~~~l~~~~avlL~nHG~ 192 (273)
T 3ocr_A 155 GRVAYHGYEGIA---LDLSERERLVADLGDKSVMILRNHGL 192 (273)
T ss_dssp TTEEEECCCCSS---CCHHHHHHHHHHHTTCSEEEETTTEE
T ss_pred CCEEEECCCCCC---CCHHHHHHHHHHhCcCCEEEEcCCce
Confidence 358888876532 12346778888888888999999995
No 20
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=42.35 E-value=20 Score=27.78 Aligned_cols=40 Identities=20% Similarity=0.101 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhc
Q 030400 63 SELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFN 102 (178)
Q Consensus 63 ~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~ 102 (178)
+..++|.++|++.+.++.-|-.+-..++.++.+.+.++|.
T Consensus 110 ~~~~~L~~aa~~~~vv~a~N~s~Gv~l~~~~~~~aa~~l~ 149 (272)
T 4f3y_A 110 PQKAQLRAAGEKIALVFSANMSVGVNVTMKLLEFAAKQFA 149 (272)
T ss_dssp HHHHHHHHHTTTSEEEECSCCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhccCCEEEECCCCHHHHHHHHHHHHHHHhcC
Confidence 3467888899999998888988888888888888888875
No 21
>2rdq_A 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II ketoglutarate dependent hydroxylase...; double stranded barrel helix, dioxygenase; HET: AKG; 1.31A {Streptomyces avermitilis} PDB: 2rdn_A* 2rdr_A* 2rds_A*
Probab=42.10 E-value=37 Score=25.84 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=30.5
Q ss_pred HHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhc
Q 030400 66 AKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFN 102 (178)
Q Consensus 66 ~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~ 102 (178)
+++.+.+++.||+.|.|- ++.+.++++.+...+.++
T Consensus 22 ~~~~~~f~~dGyvvl~~~-l~~e~v~~l~~~~~~~~~ 57 (288)
T 2rdq_A 22 AALDSFYEEHGYLFLRNV-LDRDLVKTVAEQMREGLV 57 (288)
T ss_dssp HHHHHHHHHHSEEEECSC-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEeCC-CCHHHHHHHHHHHHHHHH
Confidence 457789999999999876 899999999998887753
No 22
>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A
Probab=41.49 E-value=65 Score=23.16 Aligned_cols=39 Identities=13% Similarity=0.173 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhcceEEEec-CCCCHHHHHHHHHHHHHH
Q 030400 62 DSELAKLDFACKEWGFFQLVN-HGVSSAFLEKLKKEVQGF 100 (178)
Q Consensus 62 ~~~~~~l~~A~~~~GFf~l~n-HGI~~~~~~~~~~~a~~F 100 (178)
.+.+++|.+.+++...++|++ +|++.+.+.++....++-
T Consensus 9 ~~~v~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~ 48 (180)
T 1zav_A 9 ELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREK 48 (180)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 357889999999999999887 499999999988877753
No 23
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}
Probab=41.29 E-value=22 Score=27.08 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhc
Q 030400 62 DSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFN 102 (178)
Q Consensus 62 ~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~ 102 (178)
.+..++|.++|++.+.++--|-.|-..++.++.+.+.++|.
T Consensus 88 ~e~~~~l~~aa~~~~v~~a~N~S~Gv~l~~~~~~~aa~~l~ 128 (243)
T 3qy9_A 88 EKLLNKLDELSQNMPVFFSANMSYGVHALTKILAAAVPLLD 128 (243)
T ss_dssp HHHHHHHHHHTTTSEEEECSSCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCEEEECCccHHHHHHHHHHHHHHHhcC
Confidence 34578999999999999999999999999999998888874
No 24
>3pvj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly roll motif, Fe(II) binding, oxidoreductas; 1.85A {Pseudomonas putida KT2440} SCOP: b.82.2.5 PDB: 3v15_A 3v17_A*
Probab=41.26 E-value=19 Score=27.78 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=38.3
Q ss_pred CCCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhcC
Q 030400 44 ISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNL 103 (178)
Q Consensus 44 ~~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~l 103 (178)
..+|.=|||+...+ ++..++|..|+.++|.+.+.|-.++.+. ..+.++.|=.+
T Consensus 13 Gaei~gvdl~~~l~----~~~~~~l~~~l~~~gvv~fR~q~l~~~~---~~~fa~~fG~l 65 (277)
T 3pvj_A 13 GAQISGVDISRDIS----AEERDAIEQALLQHQVLFLRDQPINPEQ---QARFAARFGDL 65 (277)
T ss_dssp CEEEESCCTTSCCC----HHHHHHHHHHHHHHSEEEESSCCCCHHH---HHHHHGGGSCE
T ss_pred eEEEeCCCccccCC----HHHHHHHHHHHHHCCEEEECCCCCCHHH---HHHHHHHhCCC
Confidence 45677788886332 2457899999999999999999888654 34566666443
No 25
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=40.44 E-value=43 Score=19.45 Aligned_cols=31 Identities=26% Similarity=0.545 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHH
Q 030400 65 LAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQ 98 (178)
Q Consensus 65 ~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~ 98 (178)
+.+|.+.|+..| |.-.|.-.++++++.....
T Consensus 15 V~eLK~~L~~rG---L~~~G~KaeLieRL~~~l~ 45 (55)
T 2do1_A 15 LAELKQECLARG---LETKGIKQDLIHRLQAYLE 45 (55)
T ss_dssp HHHHHHHHHHHT---CCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCCCCcHHHHHHHHHHHHh
Confidence 678999999999 3456777888888876543
No 26
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=40.43 E-value=67 Score=22.91 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhcc-eEEEec-CCCCHHHHHHHHHHHHH
Q 030400 62 DSELAKLDFACKEWG-FFQLVN-HGVSSAFLEKLKKEVQG 99 (178)
Q Consensus 62 ~~~~~~l~~A~~~~G-Ff~l~n-HGI~~~~~~~~~~~a~~ 99 (178)
.+.+++|.+.+++.. .++|++ +|++.+.+.++....++
T Consensus 7 ~~~v~el~~~l~~~~~~v~v~~~~gltv~~~~~LR~~lr~ 46 (173)
T 2j01_J 7 VELLATLKENLERAQGSFFLVNYQGLPAKETHALRQALKQ 46 (173)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 357888999999888 666665 58999888888887764
No 27
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=39.58 E-value=26 Score=27.51 Aligned_cols=39 Identities=18% Similarity=0.098 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhc
Q 030400 64 ELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFN 102 (178)
Q Consensus 64 ~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~ 102 (178)
..++|.++|++.++|+.-|-.|-..++.++.+.+.++|.
T Consensus 126 ~~~~L~~aa~~~~~~~a~N~SiGv~ll~~l~~~aa~~l~ 164 (288)
T 3ijp_A 126 EEAQIADFAKYTTIVKSGNMSLGVNLLANLVKRAAKALD 164 (288)
T ss_dssp HHHHHHHHHTTSEEEECSCCCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCcCCEEEECCCcHHHHHHHHHHHHHHHhcC
Confidence 456788888888888888888888888888888877775
No 28
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A*
Probab=38.86 E-value=40 Score=25.67 Aligned_cols=37 Identities=11% Similarity=0.078 Sum_probs=31.2
Q ss_pred HHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhcC
Q 030400 66 AKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNL 103 (178)
Q Consensus 66 ~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~l 103 (178)
.+..+.+++.||+.|.|- ++.+.++++.+...+.++.
T Consensus 6 ~e~~~~f~~dGyvvl~~~-l~~e~v~~l~~~~~~~~~~ 42 (291)
T 2opw_A 6 PSQLQKFQQDGFLVLEGF-LSAEECVAMQQRIGEIVAE 42 (291)
T ss_dssp HHHHHHHHHHSEEEETTS-SCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCEEEecCC-CCHHHHHHHHHHHHHHHhh
Confidence 345678999999999986 8999999999999888753
No 29
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=35.91 E-value=48 Score=25.34 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHhcceEEEecC-CCCHHHHHHHHHHHHH
Q 030400 61 MDSELAKLDFACKEWGFFQLVNH-GVSSAFLEKLKKEVQG 99 (178)
Q Consensus 61 ~~~~~~~l~~A~~~~GFf~l~nH-GI~~~~~~~~~~~a~~ 99 (178)
..++.+.+.+||.+.|| .+.-. ||+.+-+..+.+.+.+
T Consensus 172 ~l~E~~avAka~a~~g~-~lEPTGGIdl~N~~~I~~i~l~ 210 (249)
T 3m0z_A 172 HRAEFEAVAKACAAHDF-WLEPTGGIDLENYSEILKIALD 210 (249)
T ss_dssp THHHHHHHHHHHHHTTC-EEEEBSSCCTTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCc-eECCCCCccHhhHHHHHHHHHH
Confidence 34567899999999999 66654 7998888888777654
No 30
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=34.70 E-value=59 Score=21.84 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=27.0
Q ss_pred CCCc-eeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCHH
Q 030400 45 SQIP-VIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSA 88 (178)
Q Consensus 45 ~~iP-vIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~ 88 (178)
..-| |||++.+... . ...+|...|+++|+..|-=-|.+.+
T Consensus 46 ~~aPVVlDl~~l~~~-~---dl~~L~~~l~~~gl~~vGV~g~~~~ 86 (120)
T 3ghf_A 46 KHAPVVINVSGLESP-V---NWPELHKIVTSTGLRIIGVSGCKDA 86 (120)
T ss_dssp TTCEEEEEEEECCSS-C---CHHHHHHHHHTTTCEEEEEESCCCH
T ss_pred CCCcEEEEccccCCh-H---HHHHHHHHHHHcCCEEEEEeCCCcH
Confidence 3455 5799987521 1 2567889999999998765554444
No 31
>4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp}
Probab=34.38 E-value=83 Score=23.36 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcce---EEE---ecCCCCHHHHHHHHHHHHHHhc
Q 030400 63 SELAKLDFACKEWGF---FQL---VNHGVSSAFLEKLKKEVQGFFN 102 (178)
Q Consensus 63 ~~~~~l~~A~~~~GF---f~l---~nHGI~~~~~~~~~~~a~~FF~ 102 (178)
+.++++.+.+++.|+ |.. .+|+|+.+.++.+.+.-++-|+
T Consensus 200 ~~~~~~~~~L~~~g~~v~~~~y~g~gH~i~~~~l~~~~~fL~k~l~ 245 (246)
T 4f21_A 200 VLGHDLSDKLKVSGFANEYKHYVGMQHSVCMEEIKDISNFIAKTFK 245 (246)
T ss_dssp HHHHHHHHHHHTTTCCEEEEEESSCCSSCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCeEEEEECCCCCccCHHHHHHHHHHHHHHhC
Confidence 346677778888885 323 3699999988887776665554
No 32
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=34.31 E-value=71 Score=23.74 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcceEEEec-CCCCHHHHHHHHHHHHH
Q 030400 62 DSELAKLDFACKEWGFFQLVN-HGVSSAFLEKLKKEVQG 99 (178)
Q Consensus 62 ~~~~~~l~~A~~~~GFf~l~n-HGI~~~~~~~~~~~a~~ 99 (178)
.+.+++|.+.+.++..++|++ +|++...++++.+..++
T Consensus 6 ~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~ 44 (213)
T 3jsy_A 6 IEEVKTLKGLIKSKPVVAIVDMMDVPAPQLQEIRDKIRD 44 (213)
T ss_dssp HHHHHHHHHHHHHSSEEEEEECCSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhC
Confidence 346788888888887777776 68888888888877764
No 33
>3r1j_A Alpha-ketoglutarate-dependent taurine dioxygenase; ssgcid, oxidoreductase, structural genomics; 2.05A {Mycobacterium avium} SCOP: b.82.2.0 PDB: 3swt_A
Probab=34.30 E-value=36 Score=26.64 Aligned_cols=53 Identities=6% Similarity=-0.036 Sum_probs=38.1
Q ss_pred CCCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecC-CCCHHHHHHHHHHHHHHhcC
Q 030400 44 ISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNH-GVSSAFLEKLKKEVQGFFNL 103 (178)
Q Consensus 44 ~~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nH-GI~~~~~~~~~~~a~~FF~l 103 (178)
..+|+=|||+...+ ++..++|+.|+.++|.+.+.|- .++.+. ..+.++.|=.+
T Consensus 19 Gaei~gvdl~~~L~----d~~~~~l~~al~~~gvv~fR~q~~l~~~~---~~~fa~~fG~l 72 (301)
T 3r1j_A 19 GARVDGVRLGGDLD----DATVEQIRRALLTHKVIFFRHQHHLDDSR---QLEFARLLGTP 72 (301)
T ss_dssp CEEEESCCCSTTCC----HHHHHHHHHHHHHHSEEEECCCTTCCHHH---HHHHHHHHSCB
T ss_pred cceEeCCCccccCC----HHHHHHHHHHHHHCCEEEECCCCCCCHHH---HHHHHHhcCCc
Confidence 45677788884221 2467899999999999999998 788764 34566666544
No 34
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=33.24 E-value=53 Score=25.41 Aligned_cols=38 Identities=24% Similarity=0.363 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHhcceEEEecC-CCCHHHHHHHHHHHHH
Q 030400 61 MDSELAKLDFACKEWGFFQLVNH-GVSSAFLEKLKKEVQG 99 (178)
Q Consensus 61 ~~~~~~~l~~A~~~~GFf~l~nH-GI~~~~~~~~~~~a~~ 99 (178)
..++.+.+.+||.+.|| .+.-. ||+.+-+..+.+.+.+
T Consensus 195 ~leEl~avAkAca~~g~-~lEPTGGIdl~Nf~~I~~i~l~ 233 (275)
T 3m6y_A 195 HEEEYRAVAKACAEEGF-ALEPTGGIDKENFETIVRIALE 233 (275)
T ss_dssp THHHHHHHHHHHHHHTC-EEEEBSSCCTTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCc-eECCCCCccHhHHHHHHHHHHH
Confidence 34567899999999999 66654 7998888888776654
No 35
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9
Probab=30.54 E-value=56 Score=25.14 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=30.1
Q ss_pred HHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhcC
Q 030400 67 KLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFNL 103 (178)
Q Consensus 67 ~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~l 103 (178)
+..+.+++.||+.|.|- ++.+.++++.+...++++.
T Consensus 26 e~~~~f~~dGyvvl~~~-l~~e~v~~l~~~~~~~~~~ 61 (308)
T 2a1x_A 26 EQRKFYEENGFLVIKNL-VPDADIQRFRNEFEKICRK 61 (308)
T ss_dssp THHHHHHHHSEEEETTC-SCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCEEEccCC-CCHHHHHHHHHHHHHHHhc
Confidence 33567899999999876 8999999999999888753
No 36
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3
Probab=29.01 E-value=64 Score=24.43 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=0.0
Q ss_pred eeecCCCCCCcchHHHHHHHHHHHHhcceEEEecC-CCCHHHHHHHHHHHHH
Q 030400 49 VIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNH-GVSSAFLEKLKKEVQG 99 (178)
Q Consensus 49 vIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nH-GI~~~~~~~~~~~a~~ 99 (178)
+|||+. .+.+....+.|.+.|-=.|++. |.+++..+.+.++++.
T Consensus 57 vIDFT~-------P~a~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~ 101 (228)
T 1vm6_A 57 VIDFSS-------PEALPKTVDLCKKYRAGLVLGTTALKEEHLQMLRELSKE 101 (228)
T ss_dssp EEECSC-------GGGHHHHHHHHHHHTCEEEECCCSCCHHHHHHHHHHTTT
T ss_pred EEECCC-------HHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHHhh
No 37
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens}
Probab=28.21 E-value=75 Score=24.80 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=30.2
Q ss_pred HHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhc
Q 030400 66 AKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFN 102 (178)
Q Consensus 66 ~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~ 102 (178)
.+-.+.+++.||+.|.|- ++.+.++++.+...++++
T Consensus 37 ~eqi~~f~~dGyvvi~~~-ls~eev~~lr~~i~~~~~ 72 (310)
T 3emr_A 37 KEQLDSYEKNGFLQIKNF-FSEDEVIDMQKAIFELQD 72 (310)
T ss_dssp HHHHHHHHHHSEEEETTC-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEccCC-CCHHHHHHHHHHHHHHHh
Confidence 444678999999998876 899999999998888775
No 38
>3pnt_A NAD+-glycohydrolase; glycohydrolase, NAD+, virulence factor, hydrolase-hydrolase complex; 2.80A {Streptococcus pyogenes}
Probab=26.02 E-value=85 Score=23.60 Aligned_cols=35 Identities=14% Similarity=0.256 Sum_probs=26.8
Q ss_pred CCCCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCC
Q 030400 43 LISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGV 85 (178)
Q Consensus 43 ~~~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI 85 (178)
+..-.|.||...+. .+.+..|.+..|+|-|+|.-|
T Consensus 207 SELimPSId~kgls--------~~dvLaaIe~kGYyEI~nPti 241 (268)
T 3pnt_A 207 SELIFPSISVKDLK--------SKAVLAEIDAKGYFEIIDPTI 241 (268)
T ss_dssp CCEEECEEECTTCC--------HHHHHHHHHHHSCCEEESCEE
T ss_pred cceeecccccCCCc--------HHHHHHHHhhcCeEEecCCeE
Confidence 44457999999863 356678888999999999754
No 39
>1nx8_A CARC, carbapenem synthase; jelly roll, unknown function; HET: AKG N7P; 2.30A {Pectobacterium carotovorum} SCOP: b.82.2.8 PDB: 1nx4_A*
Probab=25.48 E-value=92 Score=23.42 Aligned_cols=48 Identities=13% Similarity=0.090 Sum_probs=34.5
Q ss_pred CCCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhc
Q 030400 44 ISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFN 102 (178)
Q Consensus 44 ~~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~ 102 (178)
..+|+-||++.+ + .++|.+++.++|++.+.|-.++.+ ...+.++.|-.
T Consensus 16 Ga~i~g~dl~~~-~-------~~~l~~~l~~~G~v~~rg~~~~~~---~~~~~~~~~G~ 63 (273)
T 1nx8_A 16 GAYIDHRDFLEA-K-------TETIKNLLMRQGFVVVKNLDIDSD---TFRDIYSAYGT 63 (273)
T ss_dssp SEEECHHHHHHS-C-------HHHHHHHHHHHCEEEECSCCCCHH---HHHHHHHTTSE
T ss_pred eEEEECCCcccC-C-------HHHHHHHHHHCCEEEECCCCCCHH---HHHHHHHHhCC
Confidence 345666787765 2 678899999999999999888764 44455666543
No 40
>1zei_A Insulin, B28Asp-X-MCR; hormone, metabolic role, chemical activity, insulin mutant, cross-LINK, glucose metabolism, diabetes; 1.90A {Sus scrofa} SCOP: g.1.1.1 PDB: 6ins_E 1sju_A 2jzq_A
Probab=24.94 E-value=70 Score=18.35 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhcceEEE
Q 030400 62 DSELAKLDFACKEWGFFQL 80 (178)
Q Consensus 62 ~~~~~~l~~A~~~~GFf~l 80 (178)
.++++.|...|.+-||++-
T Consensus 9 ~~L~daL~~vC~~rgf~~~ 27 (53)
T 1zei_A 9 SHLVEALYLVCGERGFFYT 27 (53)
T ss_dssp HHHHHHHHHHHGGGCEEEE
T ss_pred HHHHHHHHHHHcccCeecC
Confidence 3578889999999999876
No 41
>3m4r_A Uncharacterized protein; short chain dehydrogenase, class II aldolase, adducin head D carbohydrate metabolism, structural genomics; 2.00A {Thermoplasma acidophilum}
Probab=24.87 E-value=31 Score=25.78 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=24.5
Q ss_pred CceeecCCCCCCcchHHHHHHHHHHHHhc-ceEEEecCCC
Q 030400 47 IPVIDMQSLLSEESMDSELAKLDFACKEW-GFFQLVNHGV 85 (178)
Q Consensus 47 iPvIDls~l~~~~~~~~~~~~l~~A~~~~-GFf~l~nHGI 85 (178)
||++++... + . ++++.|.+++.+. -.+.|.|||+
T Consensus 156 v~~~~y~~~--g--~-ela~~i~~~l~~~~~avlL~nHG~ 190 (222)
T 3m4r_A 156 VVVLPYIPP--G--F-TLAKEVMNCFKKGIDGIVLRKHGL 190 (222)
T ss_dssp EEEECCCCS--S--H-HHHHHHHHHCCTTCSEEEETTTEE
T ss_pred ceecCCcCC--c--H-HHHHHHHHHHhcCCCEEEECCCCC
Confidence 788877543 1 2 5778888888754 6677999995
No 42
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*
Probab=24.35 E-value=65 Score=24.77 Aligned_cols=40 Identities=13% Similarity=0.102 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHhc
Q 030400 63 SELAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFFN 102 (178)
Q Consensus 63 ~~~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF~ 102 (178)
+..++|.+++++.|.++..|.++-..++.++.+.+.++|.
T Consensus 109 e~~~~L~~~a~~~~vv~a~N~siGvn~~~~l~~~aa~~~~ 148 (273)
T 1dih_A 109 AGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMG 148 (273)
T ss_dssp HHHHHHHHHTTTSCEEECSCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCEEEEecCcHHHHHHHHHHHHHHHhcC
Confidence 3467788888888888888888877888888887777773
No 43
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=23.94 E-value=1.5e+02 Score=23.44 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhcceEEEec-CCCCHHHHHHHHHHHHH
Q 030400 62 DSELAKLDFACKEWGFFQLVN-HGVSSAFLEKLKKEVQG 99 (178)
Q Consensus 62 ~~~~~~l~~A~~~~GFf~l~n-HGI~~~~~~~~~~~a~~ 99 (178)
.+.+++|.+.+.++..++|++ +|++...++++.+..|.
T Consensus 12 ~~~v~el~e~l~~y~~v~vv~~~gl~v~ql~~LR~~lR~ 50 (319)
T 3iz5_s 12 VAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRG 50 (319)
T ss_dssp SHHHHHHHHHHHHCSEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhC
Confidence 357899999999998888887 79999999999988875
No 44
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=23.83 E-value=1.1e+02 Score=24.14 Aligned_cols=38 Identities=29% Similarity=0.372 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhcceEEEec-CCCCHHHHHHHHHHHHH
Q 030400 62 DSELAKLDFACKEWGFFQLVN-HGVSSAFLEKLKKEVQG 99 (178)
Q Consensus 62 ~~~~~~l~~A~~~~GFf~l~n-HGI~~~~~~~~~~~a~~ 99 (178)
.+.+++|.+.+.++..++|++ +|++...++++.+..|+
T Consensus 9 ~~~v~el~e~l~~~~~v~vv~~~gl~v~ql~~LR~~lR~ 47 (312)
T 3u5i_q 9 AEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRG 47 (312)
T ss_dssp HHHHHHHHHHHHHCSEEEEEECSSCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCCHHHHHHHHHHHhc
Confidence 347888999999988888886 68999988888887764
No 45
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A*
Probab=23.17 E-value=1.3e+02 Score=22.98 Aligned_cols=35 Identities=14% Similarity=0.086 Sum_probs=27.6
Q ss_pred HHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHHh
Q 030400 66 AKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGFF 101 (178)
Q Consensus 66 ~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~FF 101 (178)
.+..+.+++.||+.|.|- ++.+.++++.+...+.+
T Consensus 12 ~e~~~~f~~dGyvvl~~~-l~~e~v~~l~~~~~~~l 46 (313)
T 2fct_A 12 AEQRASFEKNGFIGPFDA-YSPEEMKETWKRTRLRL 46 (313)
T ss_dssp HHHHHHHHHHSEEEEEES-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEECCCC-CCHHHHHHHHHHHHHHH
Confidence 345678999999999886 79999999887665543
No 46
>3eat_X Pyoverdine biosynthesis protein PVCB; paerucumarin, Fe/alpha-ketoglutarate dependent hydroxylase, 2-isocyano-6,7-dihydroxycoumarin; 2.50A {Pseudomonas aeruginosa}
Probab=22.51 E-value=71 Score=24.67 Aligned_cols=53 Identities=9% Similarity=-0.027 Sum_probs=34.9
Q ss_pred CCCCceeecCCCCCCcchHHHHHHHHHHHHhcceEEEecCC-C-CHHHHHHHHHHHHHHhcC
Q 030400 44 ISQIPVIDMQSLLSEESMDSELAKLDFACKEWGFFQLVNHG-V-SSAFLEKLKKEVQGFFNL 103 (178)
Q Consensus 44 ~~~iPvIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~nHG-I-~~~~~~~~~~~a~~FF~l 103 (178)
..+|.=||++.-.+. +..++|+.++.++|++.+.|-. + +.+ +..+.++.|=.+
T Consensus 28 GaeI~gvdl~~~l~~----~~~~~L~~~l~~~gvv~fRgq~~l~~~~---~~~~~a~~fG~l 82 (293)
T 3eat_X 28 GLLLEPGRPGMHVGE----LPAQWLKGLARSHHLLLLRGFAAFADAE---SLTRYCHDFGEV 82 (293)
T ss_dssp CEEEEESSTTCBGGG----SCHHHHHHHHHHHSEEEECSCBCCSSHH---HHHHHHHHHSCB
T ss_pred ceEEECCCCCcCcCH----HHHHHHHHHHHHhCEEEECCCCCCCCHH---HHHHHHHHhCCC
Confidence 344555777642111 2467899999999999999976 5 554 444566666443
No 47
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=22.43 E-value=1.6e+02 Score=22.59 Aligned_cols=44 Identities=14% Similarity=0.038 Sum_probs=32.5
Q ss_pred eeecCCCCCCcchHHHHHHHHHHHHhcceEEEe-cCCCCHHHHHHHHHHHHH
Q 030400 49 VIDMQSLLSEESMDSELAKLDFACKEWGFFQLV-NHGVSSAFLEKLKKEVQG 99 (178)
Q Consensus 49 vIDls~l~~~~~~~~~~~~l~~A~~~~GFf~l~-nHGI~~~~~~~~~~~a~~ 99 (178)
+||++. .+....+...|.+.|.=.|+ ..|.+++..+++.+++++
T Consensus 77 VIDfT~-------p~a~~~~~~~al~~G~~vVigTTG~s~~~~~~L~~aa~~ 121 (272)
T 4f3y_A 77 LIDFTL-------PEGTLVHLDAALRHDVKLVIGTTGFSEPQKAQLRAAGEK 121 (272)
T ss_dssp EEECSC-------HHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHHTTT
T ss_pred EEEcCC-------HHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhcc
Confidence 677763 23455677788889988777 479999988888887764
No 48
>2kqp_A Insulin; carbohydrate metabolism, cleavage on PAIR of BAS residues, diabetes mellitus, disease mutation, disulfide BO glucose metabolism, hormone; NMR {Homo sapiens}
Probab=21.88 E-value=39 Score=21.41 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhcceEEEe
Q 030400 62 DSELAKLDFACKEWGFFQLV 81 (178)
Q Consensus 62 ~~~~~~l~~A~~~~GFf~l~ 81 (178)
.++++.|...|.+.||||..
T Consensus 9 ~~L~daL~~vC~~rGf~y~~ 28 (86)
T 2kqp_A 9 SDLVEALYLVCGERGFFYTK 28 (86)
T ss_dssp HHHHHHHHHHSGGGCCCCCC
T ss_pred HHHHHHHHHHHccCCcccCC
Confidence 35788899999999998764
No 49
>2wfu_B Probable insulin-like peptide 5 B chain; cleavage on PAIR of basic residues, signaling protein; 1.85A {Drosophila melanogaster} PDB: 2wfv_B
Probab=21.58 E-value=38 Score=16.55 Aligned_cols=14 Identities=36% Similarity=0.738 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhcce
Q 030400 63 SELAKLDFACKEWGF 77 (178)
Q Consensus 63 ~~~~~l~~A~~~~GF 77 (178)
++.+.|...|.+ ||
T Consensus 9 ~L~eaL~~vC~~-GF 22 (26)
T 2wfu_B 9 ALMDMLRVACPN-GF 22 (26)
T ss_dssp HHHHHHHHHCSS-CC
T ss_pred HHHHHHHHHHhc-cC
Confidence 577888889987 87
No 50
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*
Probab=21.45 E-value=1.3e+02 Score=22.74 Aligned_cols=35 Identities=11% Similarity=0.166 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcceEEEecCCCCHHHHHHHHHHHHHH
Q 030400 65 LAKLDFACKEWGFFQLVNHGVSSAFLEKLKKEVQGF 100 (178)
Q Consensus 65 ~~~l~~A~~~~GFf~l~nHGI~~~~~~~~~~~a~~F 100 (178)
...|.+++.+.|++++.|- +++++++.+.+.++..
T Consensus 16 ~~~i~~~L~~~g~~Vid~f-Ls~ee~~~L~~~~~~~ 50 (247)
T 2hbt_A 16 LEYIVPCMNKHGICVVDDF-LGKETGQQIGDEVRAL 50 (247)
T ss_dssp HHTHHHHHHHTSEEEESSS-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCEEEECCC-CCHHHHHHHHHHHHhh
Confidence 4678899999999887666 9999999999988874
Done!