BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030401
(178 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 94/172 (54%), Gaps = 6/172 (3%)
Query: 1 MRKVATSLVRSMAMALELEAQEISD---AYQEGLYEVRTTLYPPCPEPERVIGITQHADY 57
+R +AT + +++++ L LE + +E L +++ YP CP+PE +G+ H D
Sbjct: 175 LRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDV 234
Query: 58 SGITLLLECGNIPGLQVLKDGQWVTVIPVDGAIVANIGHIMEIMSNGIYKAPDHRAMVNR 117
S +T +L +PGLQ+ +G+WVT V +IV +IG +EI+SNG YK+ HR +VN+
Sbjct: 235 SALTFILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNK 293
Query: 118 FKERRSITTFCF-PSSSVKIGPAKEFTKSGTPPLYRTLTYAEY-RHIFYNRR 167
K R S FC P + + P E +P + T+A++ H + +
Sbjct: 294 EKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKE 345
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 94/172 (54%), Gaps = 6/172 (3%)
Query: 1 MRKVATSLVRSMAMALELEAQEISD---AYQEGLYEVRTTLYPPCPEPERVIGITQHADY 57
+R +AT + +++++ L LE + +E L +++ YP CP+PE +G+ H D
Sbjct: 176 LRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDV 235
Query: 58 SGITLLLECGNIPGLQVLKDGQWVTVIPVDGAIVANIGHIMEIMSNGIYKAPDHRAMVNR 117
S +T +L +PGLQ+ +G+WVT V +IV +IG +EI+SNG YK+ HR +VN+
Sbjct: 236 SALTFILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNK 294
Query: 118 FKERRSITTFCF-PSSSVKIGPAKEFTKSGTPPLYRTLTYAEY-RHIFYNRR 167
K R S FC P + + P E +P + T+A++ H + +
Sbjct: 295 EKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKE 346
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 103 bits (257), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 93/172 (54%), Gaps = 6/172 (3%)
Query: 1 MRKVATSLVRSMAMALELEAQEISD---AYQEGLYEVRTTLYPPCPEPERVIGITQHADY 57
+R +AT + +++++ L LE + +E L + + YP CP+PE +G+ H D
Sbjct: 176 LRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDV 235
Query: 58 SGITLLLECGNIPGLQVLKDGQWVTVIPVDGAIVANIGHIMEIMSNGIYKAPDHRAMVNR 117
S +T +L +PGLQ+ +G+WVT V +IV +IG +EI+SNG YK+ HR +VN+
Sbjct: 236 SALTFILH-NXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNK 294
Query: 118 FKERRSITTFCF-PSSSVKIGPAKEFTKSGTPPLYRTLTYAEY-RHIFYNRR 167
K R S FC P + + P E +P + T+A++ H + +
Sbjct: 295 EKVRISWAVFCEPPKDKIVLKPLPEXVSVESPAKFPPRTFAQHIEHKLFGKE 346
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 80/142 (56%), Gaps = 3/142 (2%)
Query: 1 MRKVATSLVRSMAMALELEAQEISDAY---QEGLYEVRTTLYPPCPEPERVIGITQHADY 57
+ K+A L+ + L LE + +A+ + + + + YPPCP+P+ + G+ H D
Sbjct: 121 LEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDA 180
Query: 58 SGITLLLECGNIPGLQVLKDGQWVTVIPVDGAIVANIGHIMEIMSNGIYKAPDHRAMVNR 117
GI LL + + GLQ+LKDGQW+ V P +IV N+G +E+++NG YK+ HR + +
Sbjct: 181 GGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQK 240
Query: 118 FKERRSITTFCFPSSSVKIGPA 139
R S+ +F P S I PA
Sbjct: 241 DGARXSLASFYNPGSDAVIYPA 262
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 7/126 (5%)
Query: 8 LVRSMAMALELEAQEISDAYQEGLYEVRTTLYPPCPEPERVIGITQHADYSGITLLL--E 65
++ ++A L+LE Q+G +R YPP P+ + H D + ITLLL E
Sbjct: 145 VLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLGAE 204
Query: 66 CGNIPGLQVL-KDGQWVTVIPVDGAIVANIGHIMEIMSNGIYKAPDHRAMVNRFKERRSI 124
G GL+VL +DGQW+ + P G +V NIG +E ++N + + HR +VN ERR +
Sbjct: 205 EG---GLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHR-VVNPPPERRGV 260
Query: 125 TTFCFP 130
+ P
Sbjct: 261 PRYSTP 266
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 34 VRTTLYPPCPEPER--VIGITQHADYSGITLLLECGNIPGLQV-LKDGQWVTVIPVDGAI 90
+R YPP E I H D + IT+L N PGLQV KDG W+ V G I
Sbjct: 152 LRILHYPPXTGDEEXGAIRAAAHEDINLITVL-PTANEPGLQVKAKDGSWLDVPSDFGNI 210
Query: 91 VANIGHIMEIMSNGIYKAPDHRAM----VNRFKERRSITTFCFPSSSV 134
+ NIG ++ S+G + + HR + ++ K R S+ F P SV
Sbjct: 211 IINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHPHPSV 258
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 73/172 (42%), Gaps = 23/172 (13%)
Query: 4 VATSLVRSMAMALELEAQEISDAYQ--EGLYEVRTTLYPPC-PEPERVI---------GI 51
++++L++ A+AL E + ++ + L V YP P PE I
Sbjct: 152 LSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSF 211
Query: 52 TQHADYSGITLLLECGNIPGLQVLKDGQWVTVIPVDGAIVANIGHIMEIMSNGIYKAPDH 111
H D S IT+L + N+ LQV + + D + N G M ++N YKAP H
Sbjct: 212 EWHEDVSLITVLYQS-NVQNLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIH 270
Query: 112 RA-MVNRFKERRSITTFC---FPSSSVKIGPAKEFTKSGTPPLYRTLTYAEY 159
R VN ER+S+ F + S P + KS P L+Y +Y
Sbjct: 271 RVKWVN--AERQSLPFFVNLGYDSVIDPFDPREPNGKSDREP----LSYGDY 316
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 73/172 (42%), Gaps = 23/172 (13%)
Query: 4 VATSLVRSMAMALELEAQEISDAYQ--EGLYEVRTTLYPPC-PEPERVI---------GI 51
++++L++ A+AL E + ++ + L V YP P PE I
Sbjct: 152 LSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSF 211
Query: 52 TQHADYSGITLLLECGNIPGLQVLKDGQWVTVIPVDGAIVANIGHIMEIMSNGIYKAPDH 111
H D S IT+L + N+ LQV + + D + N G M ++N YKAP H
Sbjct: 212 EWHEDVSLITVLYQS-NVQNLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIH 270
Query: 112 RA-MVNRFKERRSITTFC---FPSSSVKIGPAKEFTKSGTPPLYRTLTYAEY 159
R VN ER+S+ F + S P + KS P L+Y +Y
Sbjct: 271 RVKWVN--AERQSLPFFVNLGYDSVIDPFDPREPNGKSDREP----LSYGDY 316
>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|B Chain B, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|C Chain C, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|D Chain D, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
Length = 514
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 20/119 (16%)
Query: 69 IPGLQVLKDGQWVTVIPVDGAIVANIGHIMEIMS------NGIYKAPD-HRAMVNRFKER 121
IP L++L D WV + D NI +ME M+ NG+++ P H A+ R E
Sbjct: 396 IPSLKILGDPLWVIAVASD---ELNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEP 452
Query: 122 RSITTFCF----PSSSVKIGPAKEFTKSGTPPLYRTLTYAEYRHIFYNRRLDVSFIDML 176
+ F + V+ P K +G P+Y A + R++ FID+L
Sbjct: 453 GVVDRFLADLQDAVAQVRAHPEK---ATGMAPVYGMAAAAPPELV---RQVLTGFIDLL 505
>pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
pdb|3MBB|B Chain B, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
Length = 514
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 20/119 (16%)
Query: 69 IPGLQVLKDGQWVTVIPVDGAIVANIGHIMEIMS------NGIYKAPD-HRAMVNRFKER 121
IP L++L D WV + D NI +ME M+ NG+++ P H A+ R E
Sbjct: 396 IPSLKILGDPLWVIAVASD---ELNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEP 452
Query: 122 RSITTFCF----PSSSVKIGPAKEFTKSGTPPLYRTLTYAEYRHIFYNRRLDVSFIDML 176
+ F + V+ P K +G P+Y A + R++ FID+L
Sbjct: 453 GVVDRFLADLQDAVAQVRAHPEK---ATGMAPVYGMAAAAPPELV---RQVLTGFIDLL 505
>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form)
pdb|3MAD|B Chain B, Crystal Structure Of Stspl (Symmetric Form)
Length = 514
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 20/119 (16%)
Query: 69 IPGLQVLKDGQWVTVIPVDGAIVANIGHIMEIMS------NGIYKAPD-HRAMVNRFKER 121
IP L++L D WV + D NI +ME M+ NG+++ P H A+ R E
Sbjct: 396 IPSLKILGDPLWVIAVASD---ELNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEP 452
Query: 122 RSITTFCF----PSSSVKIGPAKEFTKSGTPPLYRTLTYAEYRHIFYNRRLDVSFIDML 176
+ F + V+ P K +G P+Y A + R++ FID+L
Sbjct: 453 GVVDRFLADLQDAVAQVRAHPEK---ATGMAPVYGMAAAAPPELV---RQVLTGFIDLL 505
>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 20/119 (16%)
Query: 69 IPGLQVLKDGQWVTVIPVDGAIVANIGHIMEIMS------NGIYKAPD-HRAMVNRFKER 121
IP L++L D WV + D NI +ME M+ NG+++ P H A+ R E
Sbjct: 400 IPSLKILGDPLWVIAVASD---ELNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEP 456
Query: 122 RSITTFCF----PSSSVKIGPAKEFTKSGTPPLYRTLTYAEYRHIFYNRRLDVSFIDML 176
+ F + V+ P K +G P+Y A + R++ FID+L
Sbjct: 457 GVVDRFLADLQDAVAQVRAHPEK---ATGMAPVYGMAAAAPPELV---RQVLTGFIDLL 509
>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 20/119 (16%)
Query: 69 IPGLQVLKDGQWVTVIPVDGAIVANIGHIMEIMS------NGIYKAPD-HRAMVNRFKER 121
IP L++L D WV + D NI +ME M+ NG+++ P H A+ R E
Sbjct: 400 IPSLKILGDPLWVIAVASD---ELNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEP 456
Query: 122 RSITTFCF----PSSSVKIGPAKEFTKSGTPPLYRTLTYAEYRHIFYNRRLDVSFIDML 176
+ F + V+ P K +G P+Y A + R++ FID+L
Sbjct: 457 GVVDRFLADLQDAVAQVRAHPEK---ATGMAPVYGMAAAAPPELV---RQVLTGFIDLL 509
>pdb|3RGK|A Chain A, Crystal Structure Of Human Myoglobin Mutant K45r
Length = 153
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 75 LKDGQWVTVIPVDGAIVANI-GHIMEIMSNGIYKAPDHRAMVNRFKERRS 123
L DG+W V+ V G + A+I GH E++ P+ +RFK +S
Sbjct: 2 LSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDRFKHLKS 51
>pdb|1VPR|A Chain A, Crystal Structure Of A Luciferase Domain From The
Dinoflagellate Lingulodinium Polyedrum
Length = 374
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 44/122 (36%), Gaps = 16/122 (13%)
Query: 41 PCPE-PERVIGITQHADYSGITLLLECGNIPGLQVLKD-----------GQWVTVIPVDG 88
PCP+ + + + DY TL L CG +P L + G+W+TV
Sbjct: 114 PCPQLTKEQVAXCKGFDYGDKTLKLPCGPLPWPAGLPEPGYVPKTNPLHGRWITVSGGQA 173
Query: 89 AIVANI---GHIMEIMSNGIYKAPDHRAMVNRFKERRSITTFCFPSSSV-KIGPAKEFTK 144
A + G + +N I DH + C +SV K AK K
Sbjct: 174 AFIKEAIKSGMLGAAEANKIVADTDHHQTGGXYLRINQFGDVCTVDASVAKFARAKRTWK 233
Query: 145 SG 146
SG
Sbjct: 234 SG 235
>pdb|1MYH|A Chain A, High Resolution X-ray Structures Of Pig Metmyoglobin And
Two Cd3 Mutants Mb(lys45-> Arg) And Mb(lys45-> Ser)
pdb|1MYH|B Chain B, High Resolution X-ray Structures Of Pig Metmyoglobin And
Two Cd3 Mutants Mb(lys45-> Arg) And Mb(lys45-> Ser)
Length = 153
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 75 LKDGQWVTVIPVDGAIVANI-GHIMEIMSNGIYKAPDHRAMVNRFKERRS 123
L DG+W V+ V G + A++ GH E++ P+ +RFK +S
Sbjct: 2 LSDGEWQLVLNVWGKVEADVAGHGQEVLIRLFKGHPETLEKFDRFKHLKS 51
>pdb|1MNK|A Chain A, Interactions Among Residues Cd3, E7, E10 And E11 In
Myoglobins: Attempts To Simulate The O2 And Co Binding
Properties Of Aplysia Myoglobin
pdb|1MNK|B Chain B, Interactions Among Residues Cd3, E7, E10 And E11 In
Myoglobins: Attempts To Simulate The O2 And Co Binding
Properties Of Aplysia Myoglobin
Length = 153
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 75 LKDGQWVTVIPVDGAIVANI-GHIMEIMSNGIYKAPDHRAMVNRFKERRSITTFCFPSSS 133
L DG+W V+ V G + A++ GH E++ P+ ++FK +S
Sbjct: 2 LSDGEWQLVLNVWGKVEADVAGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDL 61
Query: 134 VKIG 137
K+G
Sbjct: 62 KKVG 65
>pdb|1MNI|A Chain A, Alteration Of Axial Coordination By Protein Engineering In
Myoglobin. Bis-Imidazole Ligation In The His64--
>val(Slash)val68-->his Double Mutant
pdb|1MNI|B Chain B, Alteration Of Axial Coordination By Protein Engineering In
Myoglobin. Bis-Imidazole Ligation In The His64--
>val(Slash)val68-->his Double Mutant
Length = 153
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 75 LKDGQWVTVIPVDGAIVANI-GHIMEIMSNGIYKAPDHRAMVNRFKERRSITTFCFPSSS 133
L DG+W V+ V G + A++ GH E++ P+ ++FK +S
Sbjct: 2 LSDGEWQLVLNVWGKVEADVAGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDL 61
Query: 134 VKIG 137
K+G
Sbjct: 62 KKVG 65
>pdb|1MNJ|A Chain A, Interactions Among Residues Cd3, E7, E10 And E11 In
Myoglobins: Attempts To Simulate The O2 And Co Binding
Properties Of Aplysia Myoglobin
pdb|1MNJ|B Chain B, Interactions Among Residues Cd3, E7, E10 And E11 In
Myoglobins: Attempts To Simulate The O2 And Co Binding
Properties Of Aplysia Myoglobin
Length = 153
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 75 LKDGQWVTVIPVDGAIVANI-GHIMEIMSNGIYKAPDHRAMVNRFKERRSITTFCFPSSS 133
L DG+W V+ V G + A++ GH E++ P+ ++FK +S
Sbjct: 2 LSDGEWQLVLNVWGKVEADVAGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDL 61
Query: 134 VKIG 137
K+G
Sbjct: 62 KKVG 65
>pdb|1MNH|A Chain A, Interactions Among Residues Cd3, E7, E10 And E11 In
Myoglobins: Attempts To Simulate The O2 And Co Binding
Properties Of Aplysia Myoglobin
Length = 153
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 75 LKDGQWVTVIPVDGAIVANI-GHIMEIMSNGIYKAPDHRAMVNRFKERRSITTFCFPSSS 133
L DG+W V+ V G + A++ GH E++ P+ ++FK +S
Sbjct: 2 LSDGEWQLVLNVWGKVEADVAGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDL 61
Query: 134 VKIG 137
K+G
Sbjct: 62 KKVG 65
>pdb|3RJN|B Chain B, Horse Heart Myoglobin: D44kD60K MUTANT WITH ZINC (II) -
Deuteroporphyrin Dimethyl Ester
Length = 153
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 75 LKDGQWVTVIPVDGAIVANI-GHIMEIMSNGIYKAPDHRAMVNRFKERRSITTFCFPSSS 133
L DG+W V+ V G + A+I GH E++ I H + +FK+ + + T +S
Sbjct: 2 LSDGEWQQVLNVWGKVEADIAGHGQEVL---IRLFTGHPETLEKFKKFKHLKTEAEMKAS 58
Query: 134 VKI 136
K+
Sbjct: 59 EKL 61
>pdb|3HEN|A Chain A, Ferric Horse Heart Myoglobin; H64vV67R MUTANT
pdb|3HEO|A Chain A, Ferric Horse Heart Myoglobin; H64vV67R MUTANT, NITRITE
Modified
Length = 153
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 75 LKDGQWVTVIPVDGAIVANI-GHIMEIMSNGIYKAPDHRAMVNRFKERRSITTFCFPSSS 133
L DG+W V+ V G + A+I GH E++ P+ ++FK ++
Sbjct: 2 LSDGEWQQVLNVWGKVEADIAGHGQEVLIRLFTGHPETLEKFDKFKHLKTEAEMKASEDL 61
Query: 134 VKIG 137
K+G
Sbjct: 62 KKVG 65
>pdb|1MYJ|A Chain A, Distal Polarity In Ligand Binding To Myoglobin: Structural
And Functional Characterization Of A Threonine68(E11)
Mutant
pdb|1MYJ|B Chain B, Distal Polarity In Ligand Binding To Myoglobin: Structural
And Functional Characterization Of A Threonine68(E11)
Mutant
pdb|1YCA|A Chain A, Distal Pocket Polarity In Ligand Binding To Myoglobin:
Deoxy And Carbonmonoxy Forms Of A Threonine68 (E11)
Mutant Investigated By X-Ray Crystallography And
Infrared Spectroscopy
pdb|1YCA|B Chain B, Distal Pocket Polarity In Ligand Binding To Myoglobin:
Deoxy And Carbonmonoxy Forms Of A Threonine68 (E11)
Mutant Investigated By X-Ray Crystallography And
Infrared Spectroscopy
pdb|1YCB|A Chain A, Distal Pocket Polarity In Ligand Binding To Myoglobin:
Deoxy And Carbonmonoxy Forms Of A Threonine68 (E11)
Mutant Investigated By X-Ray Crystallography And
Infrared Spectroscopy
pdb|1YCB|B Chain B, Distal Pocket Polarity In Ligand Binding To Myoglobin:
Deoxy And Carbonmonoxy Forms Of A Threonine68 (E11)
Mutant Investigated By X-Ray Crystallography And
Infrared Spectroscopy
Length = 153
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 75 LKDGQWVTVIPVDGAIVANI-GHIMEIMSNGIYKAPDHRAMVNRFKERRS 123
L DG+W V+ V G + A++ GH E++ P+ ++FK +S
Sbjct: 2 LSDGEWQLVLNVWGKVEADVAGHGQEVLIRLFKGHPETLEKFDKFKHLKS 51
>pdb|1PMB|A Chain A, The Determination Of The Crystal Structure Of Recombinant
Pig Myoglobin By Molecular Replacement And Its
Refinement
pdb|1PMB|B Chain B, The Determination Of The Crystal Structure Of Recombinant
Pig Myoglobin By Molecular Replacement And Its
Refinement
pdb|1MYG|A Chain A, High Resolution X-Ray Structures Of Pig Metmyoglobin And
Two Cd3 Mutants Mb(Lys45-> Arg) And Mb(Lys45-> Ser)
pdb|1MYG|B Chain B, High Resolution X-Ray Structures Of Pig Metmyoglobin And
Two Cd3 Mutants Mb(Lys45-> Arg) And Mb(Lys45-> Ser)
pdb|1MWC|A Chain A, Wild Type Myoglobin With Co
pdb|1MWC|B Chain B, Wild Type Myoglobin With Co
pdb|1MWD|A Chain A, Wild Type Deoxy Myoglobin
pdb|1MWD|B Chain B, Wild Type Deoxy Myoglobin
Length = 153
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 75 LKDGQWVTVIPVDGAIVANI-GHIMEIMSNGIYKAPDHRAMVNRFKERRS 123
L DG+W V+ V G + A++ GH E++ P+ ++FK +S
Sbjct: 2 LSDGEWQLVLNVWGKVEADVAGHGQEVLIRLFKGHPETLEKFDKFKHLKS 51
>pdb|3HC9|A Chain A, Ferric Horse Heart Myoglobin; H64v Mutant
pdb|3HEP|A Chain A, Ferric Horse Heart Myoglobin; H64v Mutant, Nitrite
Modified
Length = 153
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 75 LKDGQWVTVIPVDGAIVANI-GHIMEIMSNGIYKAPDHRAMVNRFKERRSITTFCFPSSS 133
L DG+W V+ V G + A+I GH E++ P+ ++FK ++
Sbjct: 2 LSDGEWQQVLNVWGKVEADIAGHGQEVLIRLFTGHPETLEKFDKFKHLKTEAEMKASEDL 61
Query: 134 VKIG 137
K+G
Sbjct: 62 KKVG 65
>pdb|1M6C|A Chain A, V68n Myoglobin With Co
pdb|1M6C|B Chain B, V68n Myoglobin With Co
pdb|1M6M|A Chain A, V68n Met Myoglobin
pdb|1M6M|B Chain B, V68n Met Myoglobin
pdb|1MDN|A Chain A, Wild Type Myoglobin With Co
pdb|1MDN|B Chain B, Wild Type Myoglobin With Co
pdb|1MNO|A Chain A, V68n Myoglobin Oxy Form
pdb|1MNO|B Chain B, V68n Myoglobin Oxy Form
Length = 153
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 75 LKDGQWVTVIPVDGAIVANI-GHIMEIMSNGIYKAPDHRAMVNRFKERRS 123
L DG+W V+ V G + A++ GH E++ P+ ++FK +S
Sbjct: 2 LSDGEWQLVLNVWGKVEADVAGHGQEVLIRLFKGHPETLEKFDKFKHLKS 51
>pdb|1BJE|A Chain A, H64t Variant Of Myoglobin (Horse Heart) Recombinant Wild-
Type Complexed With Azide
pdb|1HSY|A Chain A, Origin Of The Ph-Dependent Spectroscopic Properties Of
Pentacoordinate Metmyoglobin Variants
Length = 153
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 75 LKDGQWVTVIPVDGAIVANI-GHIMEIMSNGIYKAPDHRAMVNRFKERRS 123
L DG+W V+ V G + A+I GH E++ P+ ++FK ++
Sbjct: 2 LSDGEWQQVLNVWGKVEADIAGHGQEVLIRLFTGHPETLEKFDKFKHLKT 51
>pdb|1HRM|A Chain A, The Proximal Ligand Variant His93tyr Of Horse Heart
Myoglobin
Length = 153
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 75 LKDGQWVTVIPVDGAIVANI-GHIMEIMSNGIYKAPDHRAMVNRFKERRS 123
L DG+W V+ V G + A+I GH E++ P+ ++FK ++
Sbjct: 2 LSDGEWQQVLNVWGKVEADIAGHGQEVLIRLFTGHPETLEKFDKFKHLKT 51
>pdb|1YMA|A Chain A, Structural Characterization Of Heme Ligation In The
His64-- >tyr Variant Of Myoglobin
Length = 153
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 75 LKDGQWVTVIPVDGAIVANI-GHIMEIMSNGIYKAPDHRAMVNRFKERRS 123
L DG+W V+ V G + A+I GH E++ P+ ++FK ++
Sbjct: 2 LSDGEWQQVLNVWGKVEADIAGHGQEVLIRLFTGHPETLEKFDKFKHLKT 51
>pdb|4DC7|A Chain A, Crystal Structure Of Myoglobin Exposed To Excessive Sonicc
Imaging Laser Dose.
pdb|4DC8|A Chain A, Crystal Structure Of Myoglobin Unexposed To Excessive
Sonicc Imaging Laser Dose
Length = 152
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 75 LKDGQWVTVIPVDGAIVANI-GHIMEIMSNGIYKAPDHRAMVNRFKERRS 123
L DG+W V+ V G + A+I GH E++ P+ ++FK ++
Sbjct: 2 LSDGEWQQVLNVWGKVEADIAGHGQEVLIRLFTGHPETLEKFDKFKHLKT 51
>pdb|1DWR|A Chain A, Myoglobin (Horse Heart) Wild-Type Complexed With Co
pdb|1DWS|A Chain A, Photolyzed Carbonmonoxy Myoglobin (Horse Heart)
pdb|1DWT|A Chain A, Photorelaxed Horse Heart Myoglobin Co Complex
pdb|1GJN|A Chain A, Hydrogen Peroxide Derived Myoglobin Compound Ii At Ph 5.2
pdb|1NPF|A Chain A, Myoglobin (Horse Heart) Wild-Type Complexed With Nitric
Oxide
pdb|1NPG|A Chain A, Myoglobin (Horse Heart) Wild-Type Complexed With
Nitrosoethane
pdb|2FRF|A Chain A, Horse Heart Myoglobin, Nitrite Adduct, Crystal Soak
pdb|2FRI|X Chain X, Horse Heart Myoglobin, Nitrite Adduct, Co-crystallized
pdb|2FRJ|X Chain X, Nitrosyl Horse Heart Myoglobin, NitriteDITHIONITE METHOD
pdb|2FRK|X Chain X, Nitrosyl Horse Heart Myoglobin, Nitric Oxide Gas Method
pdb|2IN4|A Chain A, Crystal Structure Of Myoglobin With Charge Neutralized
Heme, Zndmb-Dme
pdb|2V1E|A Chain A, Crystal Structure Of Radiation-Induced Myoglobin Compound
Ii - Intermediate H At Ph 6.8
pdb|2V1F|A Chain A, Crystal Structure Of Radiation-Induced Myoglobin Compound
Ii - Intermediate H At Ph 8.7
pdb|2V1G|A Chain A, Crystal Structure Of Radiation-Induced Myoglobin Compound
Ii - Intermediate H At Ph 5.2
pdb|2V1H|A Chain A, Crystal Structure Of Radiation-Induced Metmyoglobin - Aqua
Ferrous Myoglobin At Ph 5.2
pdb|2V1I|A Chain A, Crystal Structure Of Radiation-Induced Metmyoglobin - Aqua
Ferrous Myoglobin At Ph 6.8
pdb|2V1J|A Chain A, Crystal Structure Of Radiation-Induced Metmyoglobin - Aqua
Ferrous Myoglobin At Ph 8.7
pdb|2V1K|A Chain A, Crystal Structure Of Ferrous Deoxymyoglobin At Ph 6.8
pdb|1AZI|A Chain A, Myoglobin (Horse Heart) Recombinant Wild-Type Complexed
With Azide
pdb|1WLA|A Chain A, Myoglobin (horse Heart) Recombinant Wild-type
pdb|1YMB|A Chain A, High Resolution Study Of The Three-Dimensional Structure
Of Horse Heart Metmyoglobin
pdb|1YMC|A Chain A, Three-Dimensional Structure Of Cyanomet-Sulfmyoglobin C
pdb|2O58|X Chain X, Horse Heart Met Manganese Myoglobin
pdb|2O5B|X Chain X, Manganese Horse Heart Myoglobin, Reduced
pdb|2O5L|X Chain X, Manganese Horse Heart Myoglobin, Methanol Modified
pdb|2O5M|X Chain X, Manganese Horse Heart Myoglobin, Azide Modified
pdb|2O5O|X Chain X, Manganese Horse Heart Myoglobin, Nitrite Modified
pdb|2O5Q|X Chain X, Manganese Horse Heart Myoglobin, Nitric Oxide Modified
pdb|2O5S|X Chain X, Cobalt Horse Heart Myoglobin, Nitrite Modified
pdb|2O5T|X Chain X, Cobalt Horse Heart Myoglobin, Oxidized
pdb|2NSR|A Chain A, Nitromethane Modified Horse Heart Myoglobin
pdb|2NSS|A Chain A, Nitrobenzene Modified Horse Heart Myoglobin
pdb|2VLY|A Chain A, Crystal Structure Of Myoglobin Compound Iii (Radiation-
Induced)
pdb|2VLZ|A Chain A, Crystal Structure Of Peroxymyoglobin Generated By
Cryoradiolytic Reduction Of Myoglobin Compound Iii
pdb|2VM0|A Chain A, Crystal Structure Of Radiation-Induced Myoglobin Compound
Ii Generated After Annealing Of Peroxymyoglobin
pdb|3BA2|A Chain A, Cyanide Bound Chlorin Substituted Myoglobin
pdb|2VLX|A Chain A, Crystal Structure Of Peroxymyoglobin Generated By
Cryoradiolytic Reduction Of Myoglobin Compound Iii
pdb|3LR7|A Chain A, Ferric Horse Heart Myoglobin, Nitrite Adduct
pdb|3LR9|A Chain A, X-Ray Photogenerated Ferrous Horse Heart Myoglobin,
Nitrite Adduct
pdb|3VAU|A Chain A, Myoglobin Nitrite Structure: Nitriheme Modified
pdb|3VM9|A Chain A, Dimeric Horse Myoglobin
pdb|3VM9|B Chain B, Dimeric Horse Myoglobin
pdb|3V2V|A Chain A, Nitrite Bound Chlorin Substituted Myoglobin- Method 1
pdb|3V2Z|A Chain A, Nitrite Bound Chlorin Substituted Myoglobin- Method 2
Length = 153
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 75 LKDGQWVTVIPVDGAIVANI-GHIMEIMSNGIYKAPDHRAMVNRFKERRS 123
L DG+W V+ V G + A+I GH E++ P+ ++FK ++
Sbjct: 2 LSDGEWQQVLNVWGKVEADIAGHGQEVLIRLFTGHPETLEKFDKFKHLKT 51
>pdb|1RSE|A Chain A, Myoglobin (horse Heart) Mutant With Ser 92 Replaced By Asp
(s92d)
Length = 153
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 75 LKDGQWVTVIPVDGAIVANI-GHIMEIMSNGIYKAPDHRAMVNRFKERRS 123
L DG+W V+ V G + A+I GH E++ P+ ++FK ++
Sbjct: 2 LSDGEWQQVLNVWGKVEADIAGHGQEVLIRLFTGHPETLEKFDKFKHLKT 51
>pdb|1XCH|A Chain A, Myoglobin (Horse Heart) Mutant With Leu 104 Replaced By
Asn (L104n)
Length = 153
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 75 LKDGQWVTVIPVDGAIVANI-GHIMEIMSNGIYKAPDHRAMVNRFKERRS 123
L DG+W V+ V G + A+I GH E++ P+ ++FK ++
Sbjct: 2 LSDGEWQQVLNVWGKVEADIAGHGQEVLIRLFTGHPETLEKFDKFKHLKT 51
>pdb|3BV6|A Chain A, Crystal Structure Of Uncharacterized Metallo Protein From
Vibrio Cholerae With Beta-Lactamase Like Fold
pdb|3BV6|B Chain B, Crystal Structure Of Uncharacterized Metallo Protein From
Vibrio Cholerae With Beta-Lactamase Like Fold
pdb|3BV6|C Chain C, Crystal Structure Of Uncharacterized Metallo Protein From
Vibrio Cholerae With Beta-Lactamase Like Fold
pdb|3BV6|D Chain D, Crystal Structure Of Uncharacterized Metallo Protein From
Vibrio Cholerae With Beta-Lactamase Like Fold
pdb|3BV6|E Chain E, Crystal Structure Of Uncharacterized Metallo Protein From
Vibrio Cholerae With Beta-Lactamase Like Fold
pdb|3BV6|F Chain F, Crystal Structure Of Uncharacterized Metallo Protein From
Vibrio Cholerae With Beta-Lactamase Like Fold
Length = 379
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 34 VRTTLYPPCP----EPERVIGITQHADYSGITL----LLECG---NIPGLQVLKDGQWVT 82
+RT+++P P E + V+ HAD+ + + L CG G Q D
Sbjct: 119 LRTSIFPLDPFAIKEIDAVLASHDHADHIDVNVAAAVLQNCGEHVKFIGPQACVDLWLGW 178
Query: 83 VIPVDGAIVANIGHIMEI 100
+P + IVA +G ++EI
Sbjct: 179 GVPQERCIVAKVGDVLEI 196
>pdb|1MYI|A Chain A, High Resolution X-Ray Structures Of Pig Metmyoglobin And
Two Cd3 Mutants Mb(Lys45-> Arg) And Mb(Lys45-> Ser)
pdb|1MYI|B Chain B, High Resolution X-Ray Structures Of Pig Metmyoglobin And
Two Cd3 Mutants Mb(Lys45-> Arg) And Mb(Lys45-> Ser)
Length = 153
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 75 LKDGQWVTVIPVDGAIVANI-GHIMEIMSNGIYKAPDHRAMVNRFKERRS 123
L DG+W V+ V G + A++ GH E++ P+ + FK +S
Sbjct: 2 LSDGEWQLVLNVWGKVEADVAGHGQEVLIRLFKGHPETLEKFDSFKHLKS 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,083,720
Number of Sequences: 62578
Number of extensions: 197117
Number of successful extensions: 496
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 484
Number of HSP's gapped (non-prelim): 35
length of query: 178
length of database: 14,973,337
effective HSP length: 92
effective length of query: 86
effective length of database: 9,216,161
effective search space: 792589846
effective search space used: 792589846
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)