AmiGO: BLAST Results


BLAST match view associations BLAST with AT2G25100 AT2G25100 AT2G25100	protein from Arabidopsis thaliana	5.5e-70
BLAST match view associations BLAST with rnaseh2a rnaseh2a rnaseh2a ribonuclease H2, subunit A	gene_product from Danio rerio	3.5e-43
BLAST match view associations BLAST with CG13690 CG13690 CG13690	protein from Drosophila melanogaster	5.7e-43
BLAST match view associations BLAST with Rnaseh2a Rnaseh2a Rnaseh2a ribonuclease H2, subunit A	gene from Rattus norvegicus	1.9e-42
BLAST match view associations BLAST with RNASEH2A RNASEH2A RNASEH2A Ribonuclease H2 subunit A	protein from Homo sapiens	4.0e-42
BLAST match view associations BLAST with RNASEH2A RNASEH2A RNASEH2A Ribonuclease H2 subunit A	protein from Bos taurus	1.7e-41
BLAST match view associations BLAST with Rnaseh2a Rnaseh2a Rnaseh2a ribonuclease H2, large subunit	protein from Mus musculus	2.2e-41
BLAST match view associations BLAST with RNASEH2A RNASEH2A RNASEH2A Ribonuclease	protein from Canis lupus familiaris	2.8e-41
BLAST match view associations BLAST with RNASEH2A RNASEH2A RNASEH2A Ribonuclease	protein from Sus scrofa	2.8e-41
BLAST match view associations BLAST with rnaseh2A rnaseh2A rnaseh2A ribonuclease H2 subunit A	gene from Dictyostelium discoideum	3.6e-41
BLAST match view associations BLAST with PFF1150w PFF1150w PFF1150w ribonuclease H1 large subunit, putative	gene from Plasmodium falciparum	3.7e-39
BLAST match view associations BLAST with PFF1150w PFF1150w PFF1150w Ribonuclease	protein from Plasmodium falciparum 3D7	3.7e-39
BLAST match view associations BLAST with RNH35 RNH35 RNH35	gene_product from Candida albicans	2.2e-34
BLAST match view associations BLAST with rnh-2 rnh-2 rnh-2	gene from Caenorhabditis elegans	2.8e-34
BLAST match view associations BLAST with RNH201 RNH201 RNH201 Ribonuclease H2 catalytic subunit	gene from Saccharomyces cerevisiae	1.1e-30
BLAST match view associations BLAST with MGG_06959 MGG_06959 MGG_06959 Ribonuclease	protein from Magnaporthe oryzae 70-15	2.3e-30
BLAST match view associations BLAST with DDB_G0277705 DDB_G0277705 DDB_G0277705	gene from Dictyostelium discoideum	7.5e-08
BLAST match view associations BLAST with CBU_1339 CBU_1339 CBU_1339 ribonuclease HII	protein from Coxiella burnetii RSA 493	5.1e-07
BLAST match view associations BLAST with rnhB rnhB rnhB RNAse HII, degrades RNA of DNA-RNA hybrids	protein from Escherichia coli K-12	1.2e-06
BLAST match view associations BLAST with APH_1022 APH_1022 APH_1022 ribonuclease HII	protein from Anaplasma phagocytophilum HZ	3.7e-06
BLAST match view associations BLAST with rnhB rnhB rnhB Ribonuclease HII	protein from Vibrio cholerae O1 biovar El Tor str. N16961	1.0e-05
BLAST match view associations BLAST with VC_2246 VC_2246 VC_2246 ribonuclease HII	protein from Vibrio cholerae O1 biovar El Tor	1.0e-05
BLAST match view associations BLAST with CHY_1426 CHY_1426 CHY_1426 ribonuclease HII	protein from Carboxydothermus hydrogenoformans Z-2901	1.2e-05
BLAST match view associations BLAST with BA_3975 BA_3975 BA_3975 ribonuclease HII	protein from Bacillus anthracis str. Ames	1.4e-05
BLAST match view associations BLAST with CJE_0009 CJE_0009 CJE_0009 ribonuclease HII	protein from Campylobacter jejuni RM1221	5.6e-05
BLAST match view associations BLAST with DET_0780 DET_0780 DET_0780 ribonuclease HII	protein from Dehalococcoides ethenogenes 195	0.00073
BLAST match view associations BLAST with ECH_0946 ECH_0946 ECH_0946 ribonuclease HII	protein from Ehrlichia chaffeensis str. Arkansas	0.00094

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030402
        (178 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2040189 - symbol:AT2G25100 species:3702 "Arabi...   709  5.5e-70   1
ZFIN|ZDB-GENE-040426-976 - symbol:rnaseh2a "ribonuclease ...   456  3.5e-43   1
FB|FBgn0031252 - symbol:CG13690 species:7227 "Drosophila ...   454  5.7e-43   1
RGD|1307248 - symbol:Rnaseh2a "ribonuclease H2, subunit A...   449  1.9e-42   1
UNIPROTKB|Q5U209 - symbol:Rnaseh2a "Ribonuclease H2 subun...   449  1.9e-42   1
UNIPROTKB|O75792 - symbol:RNASEH2A "Ribonuclease H2 subun...   446  4.0e-42   1
UNIPROTKB|Q2TBT5 - symbol:RNASEH2A "Ribonuclease H2 subun...   440  1.7e-41   1
MGI|MGI:1916974 - symbol:Rnaseh2a "ribonuclease H2, large...   439  2.2e-41   1
UNIPROTKB|E2RQK5 - symbol:RNASEH2A "Ribonuclease" species...   438  2.8e-41   1
UNIPROTKB|F1SDX8 - symbol:RNASEH2A "Ribonuclease" species...   438  2.8e-41   1
DICTYBASE|DDB_G0292584 - symbol:rnaseh2A "ribonuclease H2...   437  3.6e-41   1
GENEDB_PFALCIPARUM|PFF1150w - symbol:PFF1150w "ribonuclea...   418  3.7e-39   1
UNIPROTKB|C6KT75 - symbol:PFF1150w "Ribonuclease" species...   418  3.7e-39   1
POMBASE|SPAC4G9.02 - symbol:rnh201 "ribonuclease H2 compl...   387  7.2e-36   1
CGD|CAL0003240 - symbol:RNH35 species:5476 "Candida albic...   373  2.2e-34   1
WB|WBGene00004383 - symbol:rnh-2 species:6239 "Caenorhabd...   372  2.8e-34   1
SGD|S000005016 - symbol:RNH201 "Ribonuclease H2 catalytic...   338  1.1e-30   1
UNIPROTKB|G4MNH9 - symbol:MGG_06959 "Ribonuclease" specie...   335  2.3e-30   1
ASPGD|ASPL0000033104 - symbol:AN5114 species:162425 "Emer...   318  1.5e-28   1
DICTYBASE|DDB_G0277705 - symbol:DDB_G0277705 species:4468...   132  7.5e-08   1
TIGR_CMR|CBU_1339 - symbol:CBU_1339 "ribonuclease HII" sp...   115  5.1e-07   2
UNIPROTKB|P10442 - symbol:rnhB "RNAse HII,  degrades RNA ...   108  1.2e-06   2
TIGR_CMR|APH_1022 - symbol:APH_1022 "ribonuclease HII" sp...   108  3.7e-06   2
UNIPROTKB|P52021 - symbol:rnhB "Ribonuclease HII" species...   110  1.0e-05   2
TIGR_CMR|VC_2246 - symbol:VC_2246 "ribonuclease HII" spec...   110  1.0e-05   2
TIGR_CMR|CHY_1426 - symbol:CHY_1426 "ribonuclease HII" sp...   111  1.2e-05   2
TIGR_CMR|BA_3975 - symbol:BA_3975 "ribonuclease HII" spec...   112  1.4e-05   2
TIGR_CMR|CJE_0009 - symbol:CJE_0009 "ribonuclease HII" sp...   110  5.6e-05   1
TIGR_CMR|DET_0780 - symbol:DET_0780 "ribonuclease HII" sp...   103  0.00073   1
TIGR_CMR|ECH_0946 - symbol:ECH_0946 "ribonuclease HII" sp...   102  0.00094   1


>TAIR|locus:2040189 [details] [associations]
            symbol:AT2G25100 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003824 "catalytic activity"
            evidence=ISS] [GO:0004523 "ribonuclease H activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
            evidence=ISM] [GO:0016070 "RNA metabolic process" evidence=IEA]
            InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
            InterPro:IPR023160 Pfam:PF01351 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0003723 GO:GO:0090305
            SUPFAM:SSF53098 GO:GO:0016070 GO:GO:0004523 EMBL:AK117633
            EMBL:BT005597 EMBL:AY087961 IPI:IPI00547479 PIR:C84644
            RefSeq:NP_565584.1 UniGene:At.39066 ProteinModelPortal:Q9SEZ6
            SMR:Q9SEZ6 STRING:Q9SEZ6 PaxDb:Q9SEZ6 PRIDE:Q9SEZ6
            EnsemblPlants:AT2G25100.1 GeneID:817048 KEGG:ath:AT2G25100
            TAIR:At2g25100 eggNOG:COG0164 HOGENOM:HOG000100290
            InParanoid:Q9SEZ6 KO:K10743 OMA:WRTAQTI PhylomeDB:Q9SEZ6
            ProtClustDB:CLSN2688398 Genevestigator:Q9SEZ6 GermOnline:AT2G25100
            Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
            TIGRFAMs:TIGR00729 Uniprot:Q9SEZ6
        Length = 296

 Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
 Identities = 133/169 (78%), Positives = 154/169 (91%)

Query:     1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
             M SE   P+WAS PC+MGIDEAGRGPVLGPMVYGC+YCP SYQ +LA+L+FADSKTLKEE
Sbjct:     1 MESECLTPEWASQPCLMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEE 60

Query:    61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
             KREEL+E LK++ S+GWAVD+IDPRELSAKML KNK NLNEISH+SA+GLI RVL++G+L
Sbjct:    61 KREELYESLKLDKSLGWAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVL 120

Query:   121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
             LTE YLDTVGD +KY+ KLS+RFPSIKFVVSKKADSL+P+VSGASIVAK
Sbjct:   121 LTEAYLDTVGDPDKYRIKLSERFPSIKFVVSKKADSLFPIVSGASIVAK 169


>ZFIN|ZDB-GENE-040426-976 [details] [associations]
            symbol:rnaseh2a "ribonuclease H2, subunit A"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004523 "ribonuclease H activity" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0016070 "RNA metabolic
            process" evidence=IEA] [GO:0004518 "nuclease activity"
            evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
            [GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001352
            InterPro:IPR004649 InterPro:IPR012337 InterPro:IPR023160
            Pfam:PF01351 ZFIN:ZDB-GENE-040426-976 GO:GO:0003723 GO:GO:0090305
            SUPFAM:SSF53098 GO:GO:0016070 GO:GO:0004523 Gene3D:1.10.10.460
            InterPro:IPR024567 PANTHER:PTHR10954 TIGRFAMs:TIGR00729
            HOVERGEN:HBG023585 EMBL:BC046061 IPI:IPI00493246 UniGene:Dr.14704
            HSSP:Q57599 ProteinModelPortal:Q7ZUZ9 STRING:Q7ZUZ9 PRIDE:Q7ZUZ9
            InParanoid:Q7ZUZ9 ArrayExpress:Q7ZUZ9 Bgee:Q7ZUZ9 Uniprot:Q7ZUZ9
        Length = 307

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 90/156 (57%), Positives = 111/156 (71%)

Query:    15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVND 73
             C +GIDEAGRGPVLGPMVYG  +CP S ++ L  L  ADSKTL E +RE LF  L +   
Sbjct:    29 CCLGIDEAGRGPVLGPMVYGICFCPVSRKEDLKNLKVADSKTLTEAERENLFVKLDEAKS 88

Query:    74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
              VGWA+ I+ P  +S  ML + K NLN +SHD+AIGL+   L+ G+ L EV++DTVG AE
Sbjct:    89 FVGWALQILSPNMISTSMLQRAKYNLNALSHDAAIGLVQYALDSGVQLKEVFVDTVGPAE 148

Query:   134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
             KYQ KLSQRFP ++  V  KADSL+P+VS ASI AK
Sbjct:   149 KYQDKLSQRFPGVEVTVRPKADSLFPIVSAASICAK 184


>FB|FBgn0031252 [details] [associations]
            symbol:CG13690 species:7227 "Drosophila melanogaster"
            [GO:0004523 "ribonuclease H activity" evidence=ISS;NAS] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0016070 "RNA metabolic process"
            evidence=IEA] InterPro:IPR001352 InterPro:IPR004649
            InterPro:IPR012337 InterPro:IPR023160 Pfam:PF01351 EMBL:AE014134
            GO:GO:0046872 GO:GO:0003723 GO:GO:0090305 SUPFAM:SSF53098
            GO:GO:0016070 GO:GO:0004523 eggNOG:COG0164 KO:K10743
            Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
            TIGRFAMs:TIGR00729 GeneTree:ENSGT00390000010768 OMA:IAEVYVD
            EMBL:BT023255 RefSeq:NP_608521.1 UniGene:Dm.30792
            ProteinModelPortal:Q9VPP5 SMR:Q9VPP5 STRING:Q9VPP5 PaxDb:Q9VPP5
            PRIDE:Q9VPP5 EnsemblMetazoa:FBtr0078090 GeneID:33213
            KEGG:dme:Dmel_CG13690 UCSC:CG13690-RA FlyBase:FBgn0031252
            InParanoid:Q9VPP5 OrthoDB:EOG4PC87Q PhylomeDB:Q9VPP5
            GenomeRNAi:33213 NextBio:782466 Bgee:Q9VPP5 GermOnline:CG13690
            Uniprot:Q9VPP5
        Length = 347

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 88/160 (55%), Positives = 112/160 (70%)

Query:    14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
             PC++G+DEAGRGPVLGPMVYG  YCP    + L  L  ADSK L E KR+ +F D+   +
Sbjct:    70 PCMLGVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKE 129

Query:    74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
                  VGWAV+II P  +S  M  ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct:   130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189

Query:   130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
             G  EKYQ KL +RFPS K  V+KKADS YP+VS ASI AK
Sbjct:   190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAK 229


>RGD|1307248 [details] [associations]
            symbol:Rnaseh2a "ribonuclease H2, subunit A" species:10116
            "Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0004523 "ribonuclease H activity" evidence=IEA;ISO;ISS]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006401 "RNA catabolic
            process" evidence=ISO;ISS] [GO:0016070 "RNA metabolic process"
            evidence=IEA] [GO:0032299 "ribonuclease H2 complex"
            evidence=ISO;ISS] [GO:0046872 "metal ion binding" evidence=IEA]
            InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
            InterPro:IPR023160 Pfam:PF01351 RGD:1307248 GO:GO:0005634
            GO:GO:0046872 GO:GO:0003723 GO:GO:0006401 SUPFAM:SSF53098
            GO:GO:0004523 eggNOG:COG0164 HOGENOM:HOG000100290 KO:K10743
            Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
            TIGRFAMs:TIGR00729 CTD:10535 HOVERGEN:HBG023585 OrthoDB:EOG4PNXHM
            GO:GO:0032299 EMBL:BC086345 EMBL:BC086539 IPI:IPI00360500
            RefSeq:NP_001013252.1 UniGene:Rn.3693 ProteinModelPortal:Q5U209
            STRING:Q5U209 GeneID:364974 KEGG:rno:364974 NextBio:686384
            ArrayExpress:Q5U209 Genevestigator:Q5U209 Uniprot:Q5U209
        Length = 301

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 87/157 (55%), Positives = 111/157 (70%)

Query:    14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
             PC++G+DEAGRGPVLGPMVY   YCP S    L  L  ADSKTL E +RE LF  ++ + 
Sbjct:    28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDG 87

Query:    73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
             D VGWA+DI+ P  +S  ML + K NLN +SHD+A GLI   ++  + +T+V++DTVG  
Sbjct:    88 DFVGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVTQVFVDTVGMP 147

Query:   133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
             E YQA+L QRFP I+  V  KADSL+PVVS ASI+AK
Sbjct:   148 ETYQARLQQRFPGIEVTVKAKADSLFPVVSAASIIAK 184


>UNIPROTKB|Q5U209 [details] [associations]
            symbol:Rnaseh2a "Ribonuclease H2 subunit A" species:10116
            "Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
            InterPro:IPR023160 Pfam:PF01351 RGD:1307248 GO:GO:0005634
            GO:GO:0046872 GO:GO:0003723 GO:GO:0006401 SUPFAM:SSF53098
            GO:GO:0004523 eggNOG:COG0164 HOGENOM:HOG000100290 KO:K10743
            Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
            TIGRFAMs:TIGR00729 CTD:10535 HOVERGEN:HBG023585 OrthoDB:EOG4PNXHM
            GO:GO:0032299 EMBL:BC086345 EMBL:BC086539 IPI:IPI00360500
            RefSeq:NP_001013252.1 UniGene:Rn.3693 ProteinModelPortal:Q5U209
            STRING:Q5U209 GeneID:364974 KEGG:rno:364974 NextBio:686384
            ArrayExpress:Q5U209 Genevestigator:Q5U209 Uniprot:Q5U209
        Length = 301

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 87/157 (55%), Positives = 111/157 (70%)

Query:    14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
             PC++G+DEAGRGPVLGPMVY   YCP S    L  L  ADSKTL E +RE LF  ++ + 
Sbjct:    28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDG 87

Query:    73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
             D VGWA+DI+ P  +S  ML + K NLN +SHD+A GLI   ++  + +T+V++DTVG  
Sbjct:    88 DFVGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVTQVFVDTVGMP 147

Query:   133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
             E YQA+L QRFP I+  V  KADSL+PVVS ASI+AK
Sbjct:   148 ETYQARLQQRFPGIEVTVKAKADSLFPVVSAASIIAK 184


>UNIPROTKB|O75792 [details] [associations]
            symbol:RNASEH2A "Ribonuclease H2 subunit A" species:9606
            "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0046872
            "metal ion binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0032299 "ribonuclease H2 complex" evidence=IDA]
            [GO:0004523 "ribonuclease H activity" evidence=IDA] [GO:0006260
            "DNA replication" evidence=TAS] [GO:0006401 "RNA catabolic process"
            evidence=IDA] [GO:0004540 "ribonuclease activity" evidence=TAS]
            InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
            InterPro:IPR023160 Pfam:PF01351 GO:GO:0005634 GO:GO:0046872
            GO:GO:0006260 GO:GO:0003723 GO:GO:0006401 SUPFAM:SSF53098
            EMBL:CH471106 GO:GO:0004523 eggNOG:COG0164 HOGENOM:HOG000100290
            KO:K10743 OMA:WRTAQTI Gene3D:1.10.10.460 InterPro:IPR024567
            PANTHER:PTHR10954 TIGRFAMs:TIGR00729 CTD:10535 HOVERGEN:HBG023585
            OrthoDB:EOG4PNXHM GO:GO:0032299 EMBL:Z97029 EMBL:AK315327
            EMBL:BC011748 IPI:IPI00290192 RefSeq:NP_006388.2 UniGene:Hs.532851
            PDB:3P56 PDB:3PUF PDBsum:3P56 PDBsum:3PUF ProteinModelPortal:O75792
            SMR:O75792 STRING:O75792 PhosphoSite:O75792 PaxDb:O75792
            PRIDE:O75792 DNASU:10535 Ensembl:ENST00000221486 GeneID:10535
            KEGG:hsa:10535 UCSC:uc002mvg.1 GeneCards:GC19P012918
            HGNC:HGNC:18518 HPA:HPA042692 MIM:606034 MIM:610333
            neXtProt:NX_O75792 Orphanet:51 PharmGKB:PA38565 InParanoid:O75792
            PhylomeDB:O75792 EvolutionaryTrace:O75792 GenomeRNAi:10535
            NextBio:39969 Bgee:O75792 CleanEx:HS_RNASEH2A Genevestigator:O75792
            GermOnline:ENSG00000104889 Uniprot:O75792
        Length = 299

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 86/156 (55%), Positives = 108/156 (69%)

Query:    14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
             PC++G+DEAGRGPVLGPMVY   YCP      L  L  ADSKTL E +RE LF  ++  D
Sbjct:    28 PCVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTD 87

Query:    74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
              VGWA+D++ P  +S  ML + K NLN +SHD+A GLI   L+ G+ +T+V++DTVG  E
Sbjct:    88 FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPE 147

Query:   134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
              YQA+L Q FP I+  V  KAD+LYPVVS ASI AK
Sbjct:   148 TYQARLQQSFPGIEVTVKAKADALYPVVSAASICAK 183


>UNIPROTKB|Q2TBT5 [details] [associations]
            symbol:RNASEH2A "Ribonuclease H2 subunit A" species:9913
            "Bos taurus" [GO:0032299 "ribonuclease H2 complex" evidence=ISS]
            [GO:0004523 "ribonuclease H activity" evidence=ISS] [GO:0006401
            "RNA catabolic process" evidence=ISS] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001352
            InterPro:IPR004649 InterPro:IPR012337 InterPro:IPR023160
            Pfam:PF01351 GO:GO:0005634 GO:GO:0046872 GO:GO:0003723
            GO:GO:0006401 SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0164
            HOGENOM:HOG000100290 KO:K10743 OMA:WRTAQTI Gene3D:1.10.10.460
            InterPro:IPR024567 PANTHER:PTHR10954 TIGRFAMs:TIGR00729
            EMBL:BC109682 IPI:IPI00706063 RefSeq:NP_001033623.1
            UniGene:Bt.44367 ProteinModelPortal:Q2TBT5 STRING:Q2TBT5
            PRIDE:Q2TBT5 Ensembl:ENSBTAT00000012731 GeneID:512830
            KEGG:bta:512830 CTD:10535 GeneTree:ENSGT00390000010768
            HOVERGEN:HBG023585 InParanoid:Q2TBT5 OrthoDB:EOG4PNXHM
            NextBio:20870572 GO:GO:0032299 Uniprot:Q2TBT5
        Length = 299

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 85/163 (52%), Positives = 111/163 (68%)

Query:     8 PKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE 67
             P     PC++G+DEAGRGPVLGPMVY   YCP S  + L  L  ADSKTL E +R+ LF 
Sbjct:    22 PVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLEDLEALKVADSKTLSESERDRLFA 81

Query:    68 DLKVN-DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL 126
              ++ + D VGWA+D++ P  +S  ML + K NLN +SHD+A GL+   L+ G+ + +V++
Sbjct:    82 KMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLVQFALDQGVNVAQVFV 141

Query:   127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
             DTVG  E YQ +L QRFP I+  V  KAD+LYPVVS ASI AK
Sbjct:   142 DTVGLPETYQERLQQRFPGIEVTVKAKADALYPVVSAASICAK 184


>MGI|MGI:1916974 [details] [associations]
            symbol:Rnaseh2a "ribonuclease H2, large subunit"
            species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004518
            "nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
            activity" evidence=IEA] [GO:0004523 "ribonuclease H activity"
            evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0006401 "RNA
            catabolic process" evidence=ISO] [GO:0016070 "RNA metabolic
            process" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0032299 "ribonuclease H2 complex"
            evidence=ISO;IDA] [GO:0046872 "metal ion binding" evidence=IEA]
            InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
            InterPro:IPR023160 Pfam:PF01351 MGI:MGI:1916974 GO:GO:0005634
            GO:GO:0046872 GO:GO:0003723 GO:GO:0006401 SUPFAM:SSF53098
            GO:GO:0004523 eggNOG:COG0164 HOGENOM:HOG000100290 KO:K10743
            OMA:WRTAQTI Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
            TIGRFAMs:TIGR00729 CTD:10535 GeneTree:ENSGT00390000010768
            HOVERGEN:HBG023585 OrthoDB:EOG4PNXHM GO:GO:0032299 EMBL:AK010292
            EMBL:AK146518 EMBL:BC038158 IPI:IPI00229787 RefSeq:NP_081463.1
            UniGene:Mm.182470 PDB:3KIO PDB:3P5J PDBsum:3KIO PDBsum:3P5J
            ProteinModelPortal:Q9CWY8 SMR:Q9CWY8 STRING:Q9CWY8
            PhosphoSite:Q9CWY8 PaxDb:Q9CWY8 PRIDE:Q9CWY8 DNASU:69724
            Ensembl:ENSMUST00000109736 Ensembl:ENSMUST00000109738
            Ensembl:ENSMUST00000147812 GeneID:69724 KEGG:mmu:69724
            UCSC:uc009mok.1 InParanoid:Q9CWY8 ChiTaRS:RNASEH2A
            EvolutionaryTrace:Q9CWY8 NextBio:330190 Bgee:Q9CWY8
            CleanEx:MM_RNASEH2A Genevestigator:Q9CWY8
            GermOnline:ENSMUSG00000052926 Uniprot:Q9CWY8
        Length = 301

 Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
 Identities = 86/157 (54%), Positives = 109/157 (69%)

Query:    14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
             PC++G+DEAGRGPVLGPMVY   YCP S    L  L  ADSKTL E +RE LF  ++ + 
Sbjct:    28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDG 87

Query:    73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
             D VGWA+D++ P  +S  ML + K NLN +SHD+A GLI   L+  + +T+V++DTVG  
Sbjct:    88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMP 147

Query:   133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
             E YQA+L Q FP I+  V  KADSL+PVVS ASI AK
Sbjct:   148 ETYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAK 184


>UNIPROTKB|E2RQK5 [details] [associations]
            symbol:RNASEH2A "Ribonuclease" species:9615 "Canis lupus
            familiaris" [GO:0032299 "ribonuclease H2 complex" evidence=IEA]
            [GO:0006401 "RNA catabolic process" evidence=IEA] [GO:0004523
            "ribonuclease H activity" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] InterPro:IPR001352 InterPro:IPR004649
            InterPro:IPR012337 InterPro:IPR023160 Pfam:PF01351 GO:GO:0003723
            GO:GO:0006401 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004523 KO:K10743
            OMA:WRTAQTI Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
            TIGRFAMs:TIGR00729 GeneTree:ENSGT00390000010768 GO:GO:0032299
            EMBL:AAEX03012405 RefSeq:XP_003639769.1 ProteinModelPortal:E2RQK5
            Ensembl:ENSCAFT00000027175 GeneID:100856442 KEGG:cfa:100856442
            NextBio:20858991 Uniprot:E2RQK5
        Length = 299

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 85/157 (54%), Positives = 108/157 (68%)

Query:    14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVN 72
             PC++G+DEAGRGPVLGPMVY   YCP S    L  L  ADSKTL E +R+ LF  + K  
Sbjct:    28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLGDLEALKVADSKTLSESERDRLFVKMEKDR 87

Query:    73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
             D VGWA+D++ P  +S  ML + K NLN +SHD+A GL+   L+ G+ + +V++DTVG  
Sbjct:    88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGLP 147

Query:   133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
             E YQ +L QRFP I+  V  KAD+LYPVVS ASI AK
Sbjct:   148 ETYQERLQQRFPGIEVTVKAKADALYPVVSAASICAK 184


>UNIPROTKB|F1SDX8 [details] [associations]
            symbol:RNASEH2A "Ribonuclease" species:9823 "Sus scrofa"
            [GO:0032299 "ribonuclease H2 complex" evidence=IEA] [GO:0006401
            "RNA catabolic process" evidence=IEA] [GO:0004523 "ribonuclease H
            activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
            InterPro:IPR023160 Pfam:PF01351 GO:GO:0003723 GO:GO:0006401
            GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004523 KO:K10743 OMA:WRTAQTI
            Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
            TIGRFAMs:TIGR00729 CTD:10535 GeneTree:ENSGT00390000010768
            GO:GO:0032299 EMBL:CU914382 RefSeq:NP_001231373.1 UniGene:Ssc.19088
            Ensembl:ENSSSCT00000015011 GeneID:100523170 KEGG:ssc:100523170
            Uniprot:F1SDX8
        Length = 301

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 84/157 (53%), Positives = 109/157 (69%)

Query:    14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
             PC++G+DEAGRGPVLGPMVY   YCP S    L  L  ADSKTL E +R+ LF  ++ + 
Sbjct:    28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFAKMEEDG 87

Query:    73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
             D VGWA+D++ P  +S  ML + K NLN +SHD+A GL+   L+ G+ + +V++DTVG  
Sbjct:    88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGLP 147

Query:   133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
             E YQ +L QRFP I+  V  KAD+LYPVVS ASI AK
Sbjct:   148 ETYQERLQQRFPDIEVTVKAKADALYPVVSAASICAK 184


>DICTYBASE|DDB_G0292584 [details] [associations]
            symbol:rnaseh2A "ribonuclease H2 subunit A"
            species:44689 "Dictyostelium discoideum" [GO:0016070 "RNA metabolic
            process" evidence=IEA;IC] [GO:0004523 "ribonuclease H activity"
            evidence=IEA;ISS] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0032299
            "ribonuclease H2 complex" evidence=ISS] [GO:0090305 "nucleic acid
            phosphodiester bond hydrolysis" evidence=IEA] [GO:0046872 "metal
            ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
            [GO:0004518 "nuclease activity" evidence=IEA] InterPro:IPR001352
            InterPro:IPR004649 InterPro:IPR012337 InterPro:IPR023160
            dictyBase:DDB_G0292584 Pfam:PF01351 GenomeReviews:CM000155_GR
            EMBL:AAFI02000194 GO:GO:0046872 GO:GO:0003723 SUPFAM:SSF53098
            GO:GO:0016070 GO:GO:0004523 eggNOG:COG0164 KO:K10743 OMA:WRTAQTI
            Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
            TIGRFAMs:TIGR00729 GO:GO:0032299 RefSeq:XP_629507.1 HSSP:O59351
            ProteinModelPortal:Q54D13 STRING:Q54D13 EnsemblProtists:DDB0266383
            GeneID:8628758 KEGG:ddi:DDB_G0292584 Uniprot:Q54D13
        Length = 289

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 90/160 (56%), Positives = 113/160 (70%)

Query:    12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-K 70
             S P +MGIDEAGRGPV+GPMVYGC Y P S   TL ++ F DSK L E++R++LF+ + +
Sbjct:    18 SEPFVMGIDEAGRGPVMGPMVYGCCYAPISKSTTLKSMKFNDSKKLTEQQRDQLFDKMGE 77

Query:    71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
              N  + +  D+I    LS KML K  I+LN ISH+SAIGLI  VL  G+ + E+YLDTVG
Sbjct:    78 SNKILAYETDVITAEILSEKMLYKKPISLNVISHESAIGLIRSVLKKGVNVQELYLDTVG 137

Query:   131 DAEKYQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAK 169
               +KYQ  L + FP I K +VSKKADSLYP+VS ASI AK
Sbjct:   138 PPDKYQLMLKKLFPEIGKIIVSKKADSLYPIVSAASIAAK 177


>GENEDB_PFALCIPARUM|PFF1150w [details] [associations]
            symbol:PFF1150w "ribonuclease H1 large subunit,
            putative" species:5833 "Plasmodium falciparum" [GO:0006401 "RNA
            catabolic process" evidence=ISS] InterPro:IPR001352
            InterPro:IPR004649 InterPro:IPR012337 InterPro:IPR023160
            Pfam:PF01351 GO:GO:0003723 GO:GO:0006401 GO:GO:0090305
            SUPFAM:SSF53098 GO:GO:0004523 EMBL:AL844505 HOGENOM:HOG000100290
            KO:K10743 OMA:WRTAQTI Gene3D:1.10.10.460 InterPro:IPR024567
            PANTHER:PTHR10954 TIGRFAMs:TIGR00729 RefSeq:XP_966221.1
            ProteinModelPortal:C6KT75 EnsemblProtists:PFF1150w:mRNA
            GeneID:3885875 KEGG:pfa:PFF1150w EuPathDB:PlasmoDB:PF3D7_0623900
            ProtClustDB:CLSZ2514453 Uniprot:C6KT75
        Length = 288

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 87/156 (55%), Positives = 110/156 (70%)

Query:    17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS-- 74
             +GIDEAGRGPVLGPMVY   YC   +++ L  +   DSK + E  RE++F  +K+N+S  
Sbjct:    19 LGIDEAGRGPVLGPMVYSGFYCNKEHEKLLKEMKIDDSKKITEADREKMF--VKLNNSKL 76

Query:    75 -VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
               GW V I+ P+++SAKML K K NLNEISHD+AI +I  V+N G  LTEV++DTVG A 
Sbjct:    77 PFGWRVHILLPQDISAKMLKKQKYNLNEISHDTAISIIEHVINRGCNLTEVFVDTVGKAS 136

Query:   134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
              Y+ KL + FP IK  V +KADSLYPVVS ASI AK
Sbjct:   137 VYEEKLQKMFPHIKCTVKEKADSLYPVVSAASICAK 172


>UNIPROTKB|C6KT75 [details] [associations]
            symbol:PFF1150w "Ribonuclease" species:36329 "Plasmodium
            falciparum 3D7" [GO:0006401 "RNA catabolic process" evidence=ISS]
            InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
            InterPro:IPR023160 Pfam:PF01351 GO:GO:0003723 GO:GO:0006401
            GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004523 EMBL:AL844505
            HOGENOM:HOG000100290 KO:K10743 OMA:WRTAQTI Gene3D:1.10.10.460
            InterPro:IPR024567 PANTHER:PTHR10954 TIGRFAMs:TIGR00729
            RefSeq:XP_966221.1 ProteinModelPortal:C6KT75
            EnsemblProtists:PFF1150w:mRNA GeneID:3885875 KEGG:pfa:PFF1150w
            EuPathDB:PlasmoDB:PF3D7_0623900 ProtClustDB:CLSZ2514453
            Uniprot:C6KT75
        Length = 288

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 87/156 (55%), Positives = 110/156 (70%)

Query:    17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS-- 74
             +GIDEAGRGPVLGPMVY   YC   +++ L  +   DSK + E  RE++F  +K+N+S  
Sbjct:    19 LGIDEAGRGPVLGPMVYSGFYCNKEHEKLLKEMKIDDSKKITEADREKMF--VKLNNSKL 76

Query:    75 -VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
               GW V I+ P+++SAKML K K NLNEISHD+AI +I  V+N G  LTEV++DTVG A 
Sbjct:    77 PFGWRVHILLPQDISAKMLKKQKYNLNEISHDTAISIIEHVINRGCNLTEVFVDTVGKAS 136

Query:   134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
              Y+ KL + FP IK  V +KADSLYPVVS ASI AK
Sbjct:   137 VYEEKLQKMFPHIKCTVKEKADSLYPVVSAASICAK 172


>POMBASE|SPAC4G9.02 [details] [associations]
            symbol:rnh201 "ribonuclease H2 complex subunit Rnh201
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0004523 "ribonuclease H activity"
            evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0006261
            "DNA-dependent DNA replication" evidence=ISO] [GO:0032299
            "ribonuclease H2 complex" evidence=ISO] [GO:0043137 "DNA
            replication, removal of RNA primer" evidence=IC] [GO:0046872 "metal
            ion binding" evidence=IEA] InterPro:IPR001352 InterPro:IPR004649
            InterPro:IPR012337 InterPro:IPR023160 Pfam:PF01351
            PomBase:SPAC4G9.02 GO:GO:0005634 EMBL:CU329670
            GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003723
            SUPFAM:SSF53098 GO:GO:0004523 GO:GO:0043137 eggNOG:COG0164
            HOGENOM:HOG000100290 KO:K10743 Gene3D:1.10.10.460
            InterPro:IPR024567 PANTHER:PTHR10954 TIGRFAMs:TIGR00729
            GO:GO:0032299 OMA:IAEVYVD PIR:T38861 RefSeq:NP_593684.1
            ProteinModelPortal:Q10236 STRING:Q10236 EnsemblFungi:SPAC4G9.02.1
            GeneID:2541542 KEGG:spo:SPAC4G9.02 OrthoDB:EOG4HMNKD
            NextBio:20802639 Uniprot:Q10236
        Length = 326

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 87/164 (53%), Positives = 106/164 (64%)

Query:    12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-- 69
             S P  +G+DEAGRGPVLGPMVY   YCP  +   L    FADSKTL   KREEL + +  
Sbjct:    61 SQPYRLGVDEAGRGPVLGPMVYAVAYCPVDFD--LTNYGFADSKTLASLKREELLKLICN 118

Query:    70 KVND---SVGWAVDIIDPRELSAKMLN-KNKINLNEISHDSAIGLITRVLNIGILLTEVY 125
             K N+   +VGW+   I  REL+A ML  +NK NLN  +HD+ I LI +V   GI +TE+Y
Sbjct:   119 KSNELGKNVGWSTMSISARELAAGMLRYRNKYNLNLQAHDTTIDLIKKVYESGINVTEIY 178

Query:   126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
             +DTVG    YQ KL   FP  K  V+KKADSL+P+VS ASI AK
Sbjct:   179 VDTVGPPISYQEKLQAHFPQAKVTVTKKADSLFPIVSLASICAK 222


>CGD|CAL0003240 [details] [associations]
            symbol:RNH35 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0032299 "ribonuclease H2 complex"
            evidence=IEA] [GO:0004523 "ribonuclease H activity" evidence=IEA]
            [GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
            InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
            InterPro:IPR023160 CGD:CAL0003240 Pfam:PF01351 GO:GO:0003723
            GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0016070 GO:GO:0004523
            EMBL:AACQ01000020 EMBL:AACQ01000016 eggNOG:COG0164 KO:K10743
            Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
            TIGRFAMs:TIGR00729 RefSeq:XP_720885.1 RefSeq:XP_721398.1
            RefSeq:XP_888785.1 ProteinModelPortal:Q5AGX6 STRING:Q5AGX6
            GeneID:3636987 GeneID:3637501 GeneID:3704096 KEGG:cal:CaO19.13915
            KEGG:cal:CaO19.6562 KEGG:cal:CaO19_6562 Uniprot:Q5AGX6
        Length = 431

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 80/168 (47%), Positives = 110/168 (65%)

Query:    12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT-LNFADSKTLKEEKREELFE--- 67
             + P ++G+DEAGRGPVLGPMVYG  Y   S+   L     FADSK L + KREELF+   
Sbjct:   151 TEPIVLGVDEAGRGPVLGPMVYGIAYSLESFSSKLQKEYGFADSKVLTDVKREELFKQIE 210

Query:    68 --DLKVNDSVGWAVDIIDPRELSAKMLN----KNKINLNEISHDSAIGLITRVLNIGILL 121
               D +++  +GWA   +  R++S+ ML     K   NLNE +HD+ I LI +VL  G+ +
Sbjct:   211 DPDHELHKHIGWATTTMTARDISSGMLQSVNGKGAYNLNEQAHDTTINLIKQVLAKGVKI 270

Query:   122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
             +++++DTVG    YQAKL + FP I   V+KKADS+YP+VS AS+VAK
Sbjct:   271 SKIFVDTVGPPVTYQAKLKRFFPEIDVTVTKKADSIYPIVSTASVVAK 318


>WB|WBGene00004383 [details] [associations]
            symbol:rnh-2 species:6239 "Caenorhabditis elegans"
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0004523 "ribonuclease H
            activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
            evidence=IEA] InterPro:IPR001352 InterPro:IPR004649
            InterPro:IPR012337 InterPro:IPR023160 Pfam:PF01351 GO:GO:0046872
            GO:GO:0003723 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0016070
            GO:GO:0004523 eggNOG:COG0164 HOGENOM:HOG000100290 KO:K10743
            Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
            TIGRFAMs:TIGR00729 GeneTree:ENSGT00390000010768 EMBL:AF181619
            EMBL:Z66524 RefSeq:NP_495796.1 UniGene:Cel.19550
            ProteinModelPortal:Q9U6P6 SMR:Q9U6P6 STRING:Q9U6P6 PaxDb:Q9U6P6
            EnsemblMetazoa:T13H5.7 GeneID:266861 KEGG:cel:CELE_T13H5.7
            UCSC:T13H5.7 CTD:266861 WormBase:T13H5.7 InParanoid:Q9U6P6
            OMA:IAEVYVD NextBio:953296 Uniprot:Q9U6P6
        Length = 297

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 77/167 (46%), Positives = 102/167 (61%)

Query:    14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF----EDL 69
             PC++GIDEAGRGPVLGPMVY     P      L  L   DSK L E KREE+F    ED 
Sbjct:    21 PCVLGIDEAGRGPVLGPMVYAAAISPLDQNVELKNLGVDDSKALNEAKREEIFNKMNEDE 80

Query:    70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
              +   + +A+  + P  +S  ML + K +LNE+SH++AI LI   L   + + E+ +DTV
Sbjct:    81 DIQQIIAYALRCLSPELISCSMLKRQKYSLNEVSHEAAITLIRDALACNVNVVEIKVDTV 140

Query:   130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
             G    YQAKL + FP I   V++KADSL+P+VS ASI AK +   R+
Sbjct:   141 GPKATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDSRL 187


>SGD|S000005016 [details] [associations]
            symbol:RNH201 "Ribonuclease H2 catalytic subunit"
            species:4932 "Saccharomyces cerevisiae" [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0004518 "nuclease activity" evidence=IEA] [GO:0032299
            "ribonuclease H2 complex" evidence=IDA] [GO:0004523 "ribonuclease H
            activity" evidence=IEA;ISS;IMP;IDA] [GO:0090305 "nucleic acid
            phosphodiester bond hydrolysis" evidence=IEA] [GO:0004519
            "endonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA;IDA] [GO:0046872 "metal ion binding" evidence=IEA]
            [GO:0043137 "DNA replication, removal of RNA primer"
            evidence=IGI;IDA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016070 "RNA
            metabolic process" evidence=IEA] InterPro:IPR001352
            InterPro:IPR004649 InterPro:IPR012337 InterPro:IPR023160
            SGD:S000005016 Pfam:PF01351 GO:GO:0005634 GO:GO:0005737
            GO:GO:0046872 EMBL:BK006947 GO:GO:0003723 SUPFAM:SSF53098
            GO:GO:0004523 EMBL:X86470 GO:GO:0043137 eggNOG:COG0164
            HOGENOM:HOG000100290 KO:K10743 Gene3D:1.10.10.460
            InterPro:IPR024567 PANTHER:PTHR10954 TIGRFAMs:TIGR00729
            GeneTree:ENSGT00390000010768 GO:GO:0032299 OMA:IAEVYVD
            OrthoDB:EOG4HMNKD EMBL:Z71348 PIR:S53908 RefSeq:NP_014327.1
            ProteinModelPortal:P53942 SMR:P53942 DIP:DIP-4565N IntAct:P53942
            MINT:MINT-532801 STRING:P53942 PaxDb:P53942 PeptideAtlas:P53942
            EnsemblFungi:YNL072W GeneID:855652 KEGG:sce:YNL072W CYGD:YNL072w
            NextBio:979902 Genevestigator:P53942 GermOnline:YNL072W
            Uniprot:P53942
        Length = 307

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 81/174 (46%), Positives = 105/174 (60%)

Query:     5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQ-QTLA-TLNFADSKTLKEEKR 62
             +AL +   +P IMGIDEAGRGPVLGPMVY   Y    YQ +T+     F DSK L +  R
Sbjct:    24 SALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83

Query:    63 EELFEDL-KVNDS---VGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVL 115
               LF  + + N+    +G+A   I P ++S   +K       NLNE +HD  + LI  V+
Sbjct:    84 RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVI 143

Query:   116 NIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
                + L+ VY+DTVG    YQ KL QRFP +KF V+KKADSLY +VS AS+VAK
Sbjct:   144 KQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAK 197


>UNIPROTKB|G4MNH9 [details] [associations]
            symbol:MGG_06959 "Ribonuclease" species:242507 "Magnaporthe
            oryzae 70-15" [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
            InterPro:IPR023160 Pfam:PF01351 GO:GO:0003723 GO:GO:0090305
            SUPFAM:SSF53098 GO:GO:0016070 EMBL:CM001231 GO:GO:0004523 KO:K10743
            Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
            TIGRFAMs:TIGR00729 RefSeq:XP_003709705.1 EnsemblFungi:MGG_06959T0
            GeneID:2685132 KEGG:mgr:MGG_06959 Uniprot:G4MNH9
        Length = 355

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 75/171 (43%), Positives = 98/171 (57%)

Query:    14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFEDL-- 69
             PC++G+DEAGRGPVLGPMVYG  Y P      L   T +F DSK L    R  L E L  
Sbjct:    55 PCVLGVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRETHHFDDSKVLTPAVRSSLMESLCT 114

Query:    70 --------KVNDSVGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIG 118
                      +N + GWA+  +  R++ A M+        NLN  + D+ + LI  V++ G
Sbjct:   115 PTLSQSAGSLNSTCGWAISSLSARDIGAGMMRPATSAAYNLNAQALDATVSLIQGVMDRG 174

Query:   119 ILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
             + + E+Y+DTVG    YQ KL + FP+ K  VSKKADSLYP VS AS+ AK
Sbjct:   175 VNVAEIYVDTVGPPAAYQKKLERFFPTAKVTVSKKADSLYPCVSAASVCAK 225


>ASPGD|ASPL0000033104 [details] [associations]
            symbol:AN5114 species:162425 "Emericella nidulans"
            [GO:0016070 "RNA metabolic process" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0004523 "ribonuclease H activity"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
            InterPro:IPR023160 Pfam:PF01351 GO:GO:0003723 EMBL:BN001305
            GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0016070 GO:GO:0004523
            EMBL:AACD01000088 eggNOG:COG0164 HOGENOM:HOG000100290 KO:K10743
            Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
            TIGRFAMs:TIGR00729 OMA:IAEVYVD OrthoDB:EOG4HMNKD RefSeq:XP_662718.1
            ProteinModelPortal:Q5B2W6 STRING:Q5B2W6
            EnsemblFungi:CADANIAT00003098 GeneID:2871406 KEGG:ani:AN5114.2
            Uniprot:Q5B2W6
        Length = 339

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 78/182 (42%), Positives = 106/182 (58%)

Query:    11 ASNP----CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREE 64
             A+NP     I+GIDEAGRGPVLGPMVY   Y P S   +L +   +F DSK L    R  
Sbjct:    55 ATNPEHDYLILGIDEAGRGPVLGPMVYSAFYLPSSLHHSLLSEEYSFNDSKVLTAGVRAN 114

Query:    65 LFEDL-----KVNDSVGWAVDIIDPRELSAKMLNK--NKINLNEISHDSAIGLITRVLNI 117
             L   L      +++S GWA  ++  R++S+ M+       NLN  + D+ I LI  V+  
Sbjct:   115 LMRILCTQGSPLHESCGWATKLLSARDISSGMMRPAAGVYNLNAQAMDATIELIRGVVEE 174

Query:   118 GIL-LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
               L + EVY+DT+G+   YQ KL   FPS++  V+KKADSLYP VS AS+VAK +    +
Sbjct:   175 RKLNVREVYIDTIGNPASYQKKLEMVFPSLRITVAKKADSLYPCVSAASVVAKVTRDVAL 234

Query:   177 DI 178
             D+
Sbjct:   235 DV 236


>DICTYBASE|DDB_G0277705 [details] [associations]
            symbol:DDB_G0277705 species:44689 "Dictyostelium
            discoideum" [GO:0016070 "RNA metabolic process" evidence=IEA]
            [GO:0004523 "ribonuclease H activity" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0090305 "nucleic acid phosphodiester bond
            hydrolysis" evidence=IEA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
            [GO:0004518 "nuclease activity" evidence=IEA] InterPro:IPR001352
            InterPro:IPR004649 InterPro:IPR012337 InterPro:IPR023160
            dictyBase:DDB_G0277705 Pfam:PF01351 GO:GO:0003723 GO:GO:0090305
            SUPFAM:SSF53098 GO:GO:0016070 EMBL:AAFI02000021 GO:GO:0004523
            eggNOG:COG0164 Gene3D:1.10.10.460 InterPro:IPR024567
            PANTHER:PTHR10954 TIGRFAMs:TIGR00729 KO:K03470 RefSeq:XP_642511.1
            ProteinModelPortal:Q54ZA4 EnsemblProtists:DDB0218016 GeneID:8621159
            KEGG:ddi:DDB_G0277705 InParanoid:Q54ZA4 Uniprot:Q54ZA4
        Length = 507

 Score = 132 (51.5 bits), Expect = 7.5e-08, P = 7.5e-08
 Identities = 40/160 (25%), Positives = 78/160 (48%)

Query:    17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
             + +DEAG+G +LGP+   C+      ++ L ++   DSK L  ++RE L+ D+ +  ++ 
Sbjct:   137 ISMDEAGKGALLGPLFISCVVLDDESEKYLKSMGVTDSKKLSPKRREYLY-DIIIEHALY 195

Query:    77 WAVDIIDPRELSAK--MLNKNKINLN---EISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
             +   I+   ++  +  +   N+I  N   ++  DS I  + +     I++  + ++T   
Sbjct:   196 YQTIILTSEKIDQRRELHTMNQIETNLFYQLIKDS-INNLPKNQQCKIIIDSIEMNT--- 251

Query:   132 AEKYQAKLSQRFPSIKFVV--SKKADSLYPVVSGASIVAK 169
              +KY       FP   + +    KAD  +  V  ASI+AK
Sbjct:   252 -QKYSQPFKMEFPPPLYQIYCETKADHKFISVGAASIIAK 290


>TIGR_CMR|CBU_1339 [details] [associations]
            symbol:CBU_1339 "ribonuclease HII" species:227377
            "Coxiella burnetii RSA 493" [GO:0004540 "ribonuclease activity"
            evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
            InterPro:IPR001352 InterPro:IPR012337 InterPro:IPR022898
            Pfam:PF01351 GO:GO:0005737 GO:GO:0046872 GO:GO:0003723
            EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0090305
            SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0164 InterPro:IPR024567
            PANTHER:PTHR10954 HOGENOM:HOG000100288 KO:K03470
            ProtClustDB:PRK00015 HAMAP:MF_00052_B OMA:GCSLANE
            RefSeq:NP_820328.1 ProteinModelPortal:Q83BZ8 PRIDE:Q83BZ8
            GeneID:1209245 KEGG:cbu:CBU_1339 PATRIC:17931415
            BioCyc:CBUR227377:GJ7S-1330-MONOMER Uniprot:Q83BZ8
        Length = 202

 Score = 115 (45.5 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
 Identities = 29/84 (34%), Positives = 44/84 (52%)

Query:     4 EAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKRE 63
             +A   K  SN  I G+DEAGRGP+ GP++   +         +     ADSK L  +KRE
Sbjct:     2 DAPFAKTPSNLLIAGVDEAGRGPLAGPVITAAVIL----NPEIIIEGLADSKKLSLKKRE 57

Query:    64 ELFEDLKVNDSVGWAVDIIDPREL 87
             EL+E + + +   +A+   D  E+
Sbjct:    58 ELYEKI-ITNCKAFAIARADVEEI 80

 Score = 39 (18.8 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query:   153 KADSLYPVVSGASIVAK 169
             + D   P +S ASI+AK
Sbjct:   126 QGDQNVPAISAASILAK 142


>UNIPROTKB|P10442 [details] [associations]
            symbol:rnhB "RNAse HII,  degrades RNA of DNA-RNA hybrids"
            species:83333 "Escherichia coli K-12" [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
            evidence=IEA] [GO:0043137 "DNA replication, removal of RNA primer"
            evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
            [GO:0004523 "ribonuclease H activity" evidence=IEA;IDA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR001352 InterPro:IPR012337
            InterPro:IPR022898 Pfam:PF01351 GO:GO:0005737 EMBL:U00096
            EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
            GO:GO:0046872 GO:GO:0003723 EMBL:U70214 EMBL:M19334 SUPFAM:SSF53098
            GO:GO:0004523 GO:GO:0043137 eggNOG:COG0164 InterPro:IPR024567
            PANTHER:PTHR10954 HOGENOM:HOG000100288 KO:K03470
            ProtClustDB:PRK00015 HAMAP:MF_00052_B PIR:G64742 RefSeq:NP_414725.1
            RefSeq:YP_488485.1 ProteinModelPortal:P10442 SMR:P10442
            IntAct:P10442 EnsemblBacteria:EBESCT00000003492
            EnsemblBacteria:EBESCT00000014844 GeneID:12932591 GeneID:944852
            KEGG:ecj:Y75_p0179 KEGG:eco:b0183 PATRIC:32115477 EchoBASE:EB0854
            EcoGene:EG10861 OMA:KEFTFSQ BioCyc:EcoCyc:EG10861-MONOMER
            BioCyc:ECOL316407:JW0178-MONOMER BioCyc:MetaCyc:EG10861-MONOMER
            BRENDA:3.1.26.4 Genevestigator:P10442 Uniprot:P10442
        Length = 198

 Score = 108 (43.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
 Identities = 24/72 (33%), Positives = 44/72 (61%)

Query:    16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
             + G+DE GRGP++G +V   +    +  + +A LN  DSK L E++R  L+E++K   ++
Sbjct:    12 VAGVDEVGRGPLVGAVVTAAVILDPA--RPIAGLN--DSKKLSEKRRLALYEEIK-EKAL 66

Query:    76 GWAVDIIDPREL 87
              W++   +P E+
Sbjct:    67 SWSLGRAEPHEI 78

 Score = 46 (21.3 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query:   153 KADSLYPVVSGASIVAK 169
             K DS  P +S ASI+AK
Sbjct:   124 KGDSRVPEISAASILAK 140


>TIGR_CMR|APH_1022 [details] [associations]
            symbol:APH_1022 "ribonuclease HII" species:212042
            "Anaplasma phagocytophilum HZ" [GO:0004521 "endoribonuclease
            activity" evidence=ISS] [GO:0006401 "RNA catabolic process"
            evidence=ISS] InterPro:IPR001352 InterPro:IPR012337
            InterPro:IPR022898 Pfam:PF01351 GO:GO:0005737 GO:GO:0046872
            GO:GO:0003723 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0090305
            SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0164 InterPro:IPR024567
            PANTHER:PTHR10954 RefSeq:YP_505581.1 ProteinModelPortal:Q2GJ70
            STRING:Q2GJ70 GeneID:3930611 KEGG:aph:APH_1022 PATRIC:20950790
            HOGENOM:HOG000100288 KO:K03470 OMA:NRCPKLA ProtClustDB:PRK00015
            BioCyc:APHA212042:GHPM-1029-MONOMER HAMAP:MF_00052_B Uniprot:Q2GJ70
        Length = 210

 Score = 108 (43.1 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
 Identities = 25/75 (33%), Positives = 40/75 (53%)

Query:    12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
             SN  ++G+DE G G + GP+V   +Y P    + +   N  DSK L  +KR+ L+++L  
Sbjct:    14 SNAIVVGVDEVGYGSIAGPVVAAAVYIPDRNVECIP--NIKDSKLLTPKKRDALYKELLS 71

Query:    72 NDSVGWAVDIIDPRE 86
             +   G  +  ID  E
Sbjct:    72 HTVCGTGLASIDEIE 86

 Score = 43 (20.2 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query:   138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAK--RSNFER 175
             +L  ++PS K +++   D L   ++ ASIVAK  R N  R
Sbjct:   120 ELKSQWPS-KSIIN--GDELSISIAAASIVAKVTRDNMMR 156

 Score = 38 (18.4 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
 Identities = 11/36 (30%), Positives = 23/36 (63%)

Query:    81 IID-PRELSAKMLNKNKINLNEISHD-SAIGLITRV 114
             ++D  REL ++  +K+ IN +E+S   +A  ++ +V
Sbjct:   114 LVDGSRELKSQWPSKSIINGDELSISIAAASIVAKV 149


>UNIPROTKB|P52021 [details] [associations]
            symbol:rnhB "Ribonuclease HII" species:243277 "Vibrio
            cholerae O1 biovar El Tor str. N16961" [GO:0004540 "ribonuclease
            activity" evidence=ISS] [GO:0006401 "RNA catabolic process"
            evidence=ISS] InterPro:IPR001352 InterPro:IPR012337
            InterPro:IPR022898 Pfam:PF01351 GO:GO:0005737 GO:GO:0046872
            EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
            SUPFAM:SSF53098 GO:GO:0004540 GO:GO:0004523 EMBL:U30472
            eggNOG:COG0164 InterPro:IPR024567 PANTHER:PTHR10954 KO:K03470
            OMA:NRCPKLA ProtClustDB:PRK00015 HAMAP:MF_00052_B PIR:H82100
            RefSeq:NP_231877.1 ProteinModelPortal:P52021 DNASU:2613168
            GeneID:2613168 KEGG:vch:VC2246 PATRIC:20083535 Uniprot:P52021
        Length = 206

 Score = 110 (43.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
 Identities = 27/72 (37%), Positives = 43/72 (59%)

Query:    16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
             I G+DE GRGP++G +V   +    +  + +  LN  DSK L E+KR  LF +++V  ++
Sbjct:    21 IAGVDEVGRGPLVGDVVTAAVILDPN--RPIMGLN--DSKKLSEKKRLALFPEIQVK-AL 75

Query:    76 GWAVDIIDPREL 87
              WAV    P+E+
Sbjct:    76 AWAVGRCSPQEI 87

 Score = 35 (17.4 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query:   153 KADSLYPVVSGASIVAKRSNFERMD 177
             K D     +S ASI+AK    + M+
Sbjct:   133 KGDLRVAQISAASIIAKVIRDQEME 157


>TIGR_CMR|VC_2246 [details] [associations]
            symbol:VC_2246 "ribonuclease HII" species:686 "Vibrio
            cholerae O1 biovar El Tor" [GO:0004540 "ribonuclease activity"
            evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
            InterPro:IPR001352 InterPro:IPR012337 InterPro:IPR022898
            Pfam:PF01351 GO:GO:0005737 GO:GO:0046872 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
            SUPFAM:SSF53098 GO:GO:0004540 GO:GO:0004523 EMBL:U30472
            eggNOG:COG0164 InterPro:IPR024567 PANTHER:PTHR10954 KO:K03470
            OMA:NRCPKLA ProtClustDB:PRK00015 HAMAP:MF_00052_B PIR:H82100
            RefSeq:NP_231877.1 ProteinModelPortal:P52021 DNASU:2613168
            GeneID:2613168 KEGG:vch:VC2246 PATRIC:20083535 Uniprot:P52021
        Length = 206

 Score = 110 (43.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
 Identities = 27/72 (37%), Positives = 43/72 (59%)

Query:    16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
             I G+DE GRGP++G +V   +    +  + +  LN  DSK L E+KR  LF +++V  ++
Sbjct:    21 IAGVDEVGRGPLVGDVVTAAVILDPN--RPIMGLN--DSKKLSEKKRLALFPEIQVK-AL 75

Query:    76 GWAVDIIDPREL 87
              WAV    P+E+
Sbjct:    76 AWAVGRCSPQEI 87

 Score = 35 (17.4 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query:   153 KADSLYPVVSGASIVAKRSNFERMD 177
             K D     +S ASI+AK    + M+
Sbjct:   133 KGDLRVAQISAASIIAKVIRDQEME 157


>TIGR_CMR|CHY_1426 [details] [associations]
            symbol:CHY_1426 "ribonuclease HII" species:246194
            "Carboxydothermus hydrogenoformans Z-2901" [GO:0004521
            "endoribonuclease activity" evidence=ISS] [GO:0006401 "RNA
            catabolic process" evidence=ISS] InterPro:IPR001352
            InterPro:IPR012337 InterPro:IPR022898 Pfam:PF01351 GO:GO:0005737
            GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723
            GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0164
            InterPro:IPR024567 PANTHER:PTHR10954 HOGENOM:HOG000100288 KO:K03470
            OMA:NRCPKLA HAMAP:MF_00052_B RefSeq:YP_360258.1
            ProteinModelPortal:Q3AC76 STRING:Q3AC76 GeneID:3727951
            KEGG:chy:CHY_1426 PATRIC:21275983
            BioCyc:CHYD246194:GJCN-1425-MONOMER Uniprot:Q3AC76
        Length = 231

 Score = 111 (44.1 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
 Identities = 28/70 (40%), Positives = 42/70 (60%)

Query:    16 IMGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
             + G DEAGRGPV GP+V   +   P  Y   +  ++  DSK L  +KRE+LFE++ +N  
Sbjct:    40 VAGGDEAGRGPVAGPVVAAIVVIKPGIY---IPEVD--DSKKLSSKKREKLFEEI-INLV 93

Query:    75 VGWAVDIIDP 84
               W+V ++ P
Sbjct:    94 TDWSVAVVGP 103

 Score = 36 (17.7 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query:   147 KFVVSKKADSLYPVVSGASIVAK 169
             K V   KAD +   V+ ASI+AK
Sbjct:   146 KQVSMVKADEISFAVACASILAK 168


>TIGR_CMR|BA_3975 [details] [associations]
            symbol:BA_3975 "ribonuclease HII" species:198094 "Bacillus
            anthracis str. Ames" [GO:0004540 "ribonuclease activity"
            evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
            InterPro:IPR001352 InterPro:IPR012337 InterPro:IPR022898
            Pfam:PF01351 GO:GO:0005737 GO:GO:0046872 EMBL:AE016879
            EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
            GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0164
            InterPro:IPR024567 PANTHER:PTHR10954 HOGENOM:HOG000100288 KO:K03470
            OMA:NRCPKLA ProtClustDB:PRK00015 HAMAP:MF_00052_B
            RefSeq:NP_846217.1 RefSeq:YP_020614.1 RefSeq:YP_029939.1
            ProteinModelPortal:Q81WJ9 DNASU:1086784
            EnsemblBacteria:EBBACT00000010317 EnsemblBacteria:EBBACT00000015549
            EnsemblBacteria:EBBACT00000023093 GeneID:1086784 GeneID:2818571
            GeneID:2848416 KEGG:ban:BA_3975 KEGG:bar:GBAA_3975 KEGG:bat:BAS3688
            BioCyc:BANT260799:GJAJ-3746-MONOMER
            BioCyc:BANT261594:GJ7F-3863-MONOMER Uniprot:Q81WJ9
        Length = 257

 Score = 112 (44.5 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 27/70 (38%), Positives = 39/70 (55%)

Query:    16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
             I GIDE GRGP+ GP+V   +  P  +   +  LN  DSK L E KRE  + ++K   ++
Sbjct:    74 IAGIDEVGRGPLAGPVVTAAVILPEDFY--IPGLN--DSKKLSEAKRERFYGEIKAK-AI 128

Query:    76 GWAVDIIDPR 85
                V I+ P+
Sbjct:   129 AIGVGIVSPQ 138

 Score = 36 (17.7 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query:   138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
             KL    P    +   K D+    +S ASI+AK +  +RM
Sbjct:   173 KLPAPIPQTSII---KGDAKSISISAASIIAKVTR-DRM 207


>TIGR_CMR|CJE_0009 [details] [associations]
            symbol:CJE_0009 "ribonuclease HII" species:195099
            "Campylobacter jejuni RM1221" [GO:0004521 "endoribonuclease
            activity" evidence=ISS] [GO:0006401 "RNA catabolic process"
            evidence=ISS] InterPro:IPR001352 InterPro:IPR012337
            InterPro:IPR022898 Pfam:PF01351 GO:GO:0005737 GO:GO:0046872
            GO:GO:0003723 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0090305
            SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0164 InterPro:IPR024567
            PANTHER:PTHR10954 HOGENOM:HOG000100288 KO:K03470
            ProtClustDB:PRK00015 HAMAP:MF_00052_B RefSeq:YP_178038.1
            ProteinModelPortal:Q5HXE7 STRING:Q5HXE7 DNASU:3230665
            GeneID:3230665 KEGG:cjr:CJE0009 PATRIC:20041707 OMA:GCSLANE
            BioCyc:CJEJ195099:GJC0-9-MONOMER Uniprot:Q5HXE7
        Length = 191

 Score = 110 (43.8 bits), Expect = 5.6e-05, P = 5.6e-05
 Identities = 38/118 (32%), Positives = 59/118 (50%)

Query:    16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS- 74
             ++GIDEAGRG + GPM+       C   + L  L   DSK L E+KREEL+E +  N + 
Sbjct:    18 LIGIDEAGRGALAGPMMMAA----CKLNKQLDGL--CDSKKLSEKKREELYEIIIKNSNY 71

Query:    75 --VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGI--LLTEVYLDT 128
               + ++ + ID   LS  +    K+       ++   L     N+GI  + T++  DT
Sbjct:    72 LILAFSSEQIDALGLSTCLKKGLKLIKKHFKTENNF-LYDGNTNLGINGIKTQIKADT 128


>TIGR_CMR|DET_0780 [details] [associations]
            symbol:DET_0780 "ribonuclease HII" species:243164
            "Dehalococcoides ethenogenes 195" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0004523 "ribonuclease H activity" evidence=ISS]
            [GO:0006401 "RNA catabolic process" evidence=ISS]
            InterPro:IPR001352 InterPro:IPR012337 InterPro:IPR022898
            Pfam:PF01351 GO:GO:0005737 GO:GO:0046872 GO:GO:0003723
            EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0090305
            SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0164 InterPro:IPR024567
            PANTHER:PTHR10954 HOGENOM:HOG000100288 KO:K03470 OMA:NRCPKLA
            ProtClustDB:PRK00015 HAMAP:MF_00052_B RefSeq:YP_181512.1
            ProteinModelPortal:Q3Z8D7 STRING:Q3Z8D7 GeneID:3229884
            KEGG:det:DET0780 PATRIC:21608621 BioCyc:DETH243164:GJNF-781-MONOMER
            Uniprot:Q3Z8D7
        Length = 211

 Score = 103 (41.3 bits), Expect = 0.00073, P = 0.00073
 Identities = 25/72 (34%), Positives = 41/72 (56%)

Query:    16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
             I G+DEAGRG + GP+V G +  P   +     +   DSK L  EKRE L+  + V+ ++
Sbjct:    23 IAGLDEAGRGCLAGPVVAGAVIMPPRLKGDWVAM-VRDSKVLTPEKREYLYCHI-VSMAI 80

Query:    76 GWAVDIIDPREL 87
              + V ++D  ++
Sbjct:    81 SFGVGVVDNTQI 92


>TIGR_CMR|ECH_0946 [details] [associations]
            symbol:ECH_0946 "ribonuclease HII" species:205920
            "Ehrlichia chaffeensis str. Arkansas" [GO:0004521 "endoribonuclease
            activity" evidence=ISS] [GO:0006401 "RNA catabolic process"
            evidence=ISS] InterPro:IPR001352 InterPro:IPR012337
            InterPro:IPR022898 Pfam:PF01351 GO:GO:0005737 GO:GO:0046872
            EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003723 GO:GO:0090305
            SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0164 InterPro:IPR024567
            PANTHER:PTHR10954 HOGENOM:HOG000100288 KO:K03470 OMA:NRCPKLA
            ProtClustDB:PRK00015 HAMAP:MF_00052_B RefSeq:YP_507735.1
            ProteinModelPortal:Q2GFP8 STRING:Q2GFP8 GeneID:3927326
            KEGG:ech:ECH_0946 PATRIC:20577276
            BioCyc:ECHA205920:GJNR-949-MONOMER Uniprot:Q2GFP8
        Length = 209

 Score = 102 (41.0 bits), Expect = 0.00094, P = 0.00094
 Identities = 29/97 (29%), Positives = 49/97 (50%)

Query:     4 EAALPKWASNP-C-IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEK 61
             E  + K  +N  C I+G+DE G G + GP+V   ++ P  +   + T N  DSK L  +K
Sbjct:     7 ENEISKLINNKHCTIVGVDEVGYGSLAGPVVSAAVFFP-KHDNHI-TYNIQDSKKLTPKK 64

Query:    62 REELFEDLKVNDSVGWAVDIIDPRELSA-KMLNKNKI 97
             R E++    +   V W++ + +  E+    +LN   I
Sbjct:    65 RLEIYNI--ITPMVKWSIGLAEVHEIDQYNILNATHI 99


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.134   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      178       178   0.00086  109 3  11 22  0.44    32
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  30
  No. of states in DFA:  577 (61 KB)
  Total size of DFA:  143 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.68u 0.09s 17.77t   Elapsed:  00:00:00
  Total cpu time:  17.68u 0.09s 17.77t   Elapsed:  00:00:00
  Start:  Fri May 10 23:41:14 2013   End:  Fri May 10 23:41:14 2013

the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT2G25100 AT2G25100 AT2G25100	protein from Arabidopsis thaliana	5.5e-70
BLAST match view associations BLAST with rnaseh2a rnaseh2a rnaseh2a ribonuclease H2, subunit A	gene_product from Danio rerio	3.5e-43
BLAST match view associations BLAST with CG13690 CG13690 CG13690	protein from Drosophila melanogaster	5.7e-43
BLAST match view associations BLAST with Rnaseh2a Rnaseh2a Rnaseh2a ribonuclease H2, subunit A	gene from Rattus norvegicus	1.9e-42
BLAST match view associations BLAST with RNASEH2A RNASEH2A RNASEH2A Ribonuclease H2 subunit A	protein from Homo sapiens	4.0e-42
BLAST match view associations BLAST with RNASEH2A RNASEH2A RNASEH2A Ribonuclease H2 subunit A	protein from Bos taurus	1.7e-41
BLAST match view associations BLAST with Rnaseh2a Rnaseh2a Rnaseh2a ribonuclease H2, large subunit	protein from Mus musculus	2.2e-41
BLAST match view associations BLAST with RNASEH2A RNASEH2A RNASEH2A Ribonuclease	protein from Canis lupus familiaris	2.8e-41
BLAST match view associations BLAST with RNASEH2A RNASEH2A RNASEH2A Ribonuclease	protein from Sus scrofa	2.8e-41
BLAST match view associations BLAST with rnaseh2A rnaseh2A rnaseh2A ribonuclease H2 subunit A	gene from Dictyostelium discoideum	3.6e-41
BLAST match view associations BLAST with PFF1150w PFF1150w PFF1150w ribonuclease H1 large subunit, putative	gene from Plasmodium falciparum	3.7e-39
BLAST match view associations BLAST with PFF1150w PFF1150w PFF1150w Ribonuclease	protein from Plasmodium falciparum 3D7	3.7e-39
BLAST match view associations BLAST with RNH35 RNH35 RNH35	gene_product from Candida albicans	2.2e-34
BLAST match view associations BLAST with rnh-2 rnh-2 rnh-2	gene from Caenorhabditis elegans	2.8e-34
BLAST match view associations BLAST with RNH201 RNH201 RNH201 Ribonuclease H2 catalytic subunit	gene from Saccharomyces cerevisiae	1.1e-30
BLAST match view associations BLAST with MGG_06959 MGG_06959 MGG_06959 Ribonuclease	protein from Magnaporthe oryzae 70-15	2.3e-30
BLAST match view associations BLAST with DDB_G0277705 DDB_G0277705 DDB_G0277705	gene from Dictyostelium discoideum	7.5e-08
BLAST match view associations BLAST with CBU_1339 CBU_1339 CBU_1339 ribonuclease HII	protein from Coxiella burnetii RSA 493	5.1e-07
BLAST match view associations BLAST with rnhB rnhB rnhB RNAse HII, degrades RNA of DNA-RNA hybrids	protein from Escherichia coli K-12	1.2e-06
BLAST match view associations BLAST with APH_1022 APH_1022 APH_1022 ribonuclease HII	protein from Anaplasma phagocytophilum HZ	3.7e-06
BLAST match view associations BLAST with rnhB rnhB rnhB Ribonuclease HII	protein from Vibrio cholerae O1 biovar El Tor str. N16961	1.0e-05
BLAST match view associations BLAST with VC_2246 VC_2246 VC_2246 ribonuclease HII	protein from Vibrio cholerae O1 biovar El Tor	1.0e-05
BLAST match view associations BLAST with CHY_1426 CHY_1426 CHY_1426 ribonuclease HII	protein from Carboxydothermus hydrogenoformans Z-2901	1.2e-05
BLAST match view associations BLAST with BA_3975 BA_3975 BA_3975 ribonuclease HII	protein from Bacillus anthracis str. Ames	1.4e-05
BLAST match view associations BLAST with CJE_0009 CJE_0009 CJE_0009 ribonuclease HII	protein from Campylobacter jejuni RM1221	5.6e-05
BLAST match view associations BLAST with DET_0780 DET_0780 DET_0780 ribonuclease HII	protein from Dehalococcoides ethenogenes 195	0.00073
BLAST match view associations BLAST with ECH_0946 ECH_0946 ECH_0946 ribonuclease HII	protein from Ehrlichia chaffeensis str. Arkansas	0.00094