BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030402
(178 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225464178|ref|XP_002269817.1| PREDICTED: ribonuclease H2 subunit A isoform 1 [Vitis vinifera]
gi|296086584|emb|CBI32219.3| unnamed protein product [Vitis vinifera]
Length = 297
Score = 306 bits (785), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 144/169 (85%), Positives = 159/169 (94%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
MGSE ALPKWAS PC+MGIDEAGRGPVLGPMVYGCLYC SY TL+TLNFADSKTLKEE
Sbjct: 1 MGSETALPKWASEPCMMGIDEAGRGPVLGPMVYGCLYCARSYHNTLSTLNFADSKTLKEE 60
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
KREELFE+LK ++S+GWAVD+IDP ELSAKML KNKINLNEISHDSAIGLITRVLN+G+L
Sbjct: 61 KREELFENLKADESIGWAVDVIDPWELSAKMLKKNKINLNEISHDSAIGLITRVLNMGVL 120
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
LTEVY+DTVGDAEKY+ KLS+RFP++KFVV+KKADSLYPVVSGASIVAK
Sbjct: 121 LTEVYVDTVGDAEKYRIKLSERFPAVKFVVAKKADSLYPVVSGASIVAK 169
>gi|255549406|ref|XP_002515756.1| ribonuclease hi large subunit, putative [Ricinus communis]
gi|223545084|gb|EEF46595.1| ribonuclease hi large subunit, putative [Ricinus communis]
Length = 299
Score = 302 bits (774), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 145/171 (84%), Positives = 161/171 (94%), Gaps = 2/171 (1%)
Query: 1 MGSE--AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLK 58
MGSE + LPKWAS PCIMGIDEAGRGPVLGPMVYGCLYC SY++TL+TL+FADSKTLK
Sbjct: 1 MGSETQSTLPKWASKPCIMGIDEAGRGPVLGPMVYGCLYCARSYERTLSTLSFADSKTLK 60
Query: 59 EEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIG 118
E+KREELFE+LK N+S+GWAVD+IDPRELSAKML KNKINLNEISH+SAIGLITRVLN G
Sbjct: 61 EDKREELFENLKANESIGWAVDVIDPRELSAKMLQKNKINLNEISHESAIGLITRVLNEG 120
Query: 119 ILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+LLT+VYLDTVGDAEKY+ KLS+RFPSIKFVV+KKADSLYPVVSGASIVAK
Sbjct: 121 VLLTQVYLDTVGDAEKYRIKLSERFPSIKFVVAKKADSLYPVVSGASIVAK 171
>gi|224097610|ref|XP_002311009.1| predicted protein [Populus trichocarpa]
gi|222850829|gb|EEE88376.1| predicted protein [Populus trichocarpa]
Length = 297
Score = 292 bits (748), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 139/169 (82%), Positives = 154/169 (91%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
M SE+ LP WAS PCIMGIDEAGRGPVLGPMVYGCLYC SY++TL+TL FADSKTLKEE
Sbjct: 1 MESESILPDWASKPCIMGIDEAGRGPVLGPMVYGCLYCARSYEKTLSTLKFADSKTLKEE 60
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
KREELFE LK N+ +GWAVD+IDPRELSAKML K KINLNEISHDSA GL+TRVLN+G+L
Sbjct: 61 KREELFEKLKANELIGWAVDVIDPRELSAKMLKKIKINLNEISHDSASGLVTRVLNMGVL 120
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
LT+VY+DTVGD EKY+ KLS+RFPSIKFVV+KKADSLYPVVSGASIVAK
Sbjct: 121 LTDVYVDTVGDPEKYRIKLSERFPSIKFVVAKKADSLYPVVSGASIVAK 169
>gi|449468774|ref|XP_004152096.1| PREDICTED: ribonuclease H2 subunit A-like [Cucumis sativus]
gi|449529756|ref|XP_004171864.1| PREDICTED: ribonuclease H2 subunit A-like [Cucumis sativus]
Length = 297
Score = 291 bits (746), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 135/169 (79%), Positives = 157/169 (92%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
M S+ +LPKW S PC+MGIDEAGRGPVLGPMVYGCLYC SY + L++LNFADSKTLKEE
Sbjct: 1 MSSQDSLPKWTSKPCVMGIDEAGRGPVLGPMVYGCLYCASSYLKQLSSLNFADSKTLKEE 60
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
KREELFEDLK N+S+GWAVD+IDPRELS+KMLNK KINLNEISHDSA+GL+T+VL++G+L
Sbjct: 61 KREELFEDLKANESIGWAVDVIDPRELSSKMLNKVKINLNEISHDSAMGLVTKVLSMGVL 120
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
LTEVY+DTVGD EKY+ KLS++FP+IKFVV+KKADSLYPVVSGASIVAK
Sbjct: 121 LTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIVAK 169
>gi|18400719|ref|NP_565584.1| Ribonuclease H2 subunit A [Arabidopsis thaliana]
gi|49066054|sp|Q9SEZ6.2|RNH2A_ARATH RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|26450346|dbj|BAC42289.1| putative ribonuclease large subunit [Arabidopsis thaliana]
gi|28973385|gb|AAO64017.1| putative ribonuclease large subunit [Arabidopsis thaliana]
gi|330252563|gb|AEC07657.1| Ribonuclease H2 subunit A [Arabidopsis thaliana]
Length = 296
Score = 286 bits (732), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 133/169 (78%), Positives = 154/169 (91%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
M SE P+WAS PC+MGIDEAGRGPVLGPMVYGC+YCP SYQ +LA+L+FADSKTLKEE
Sbjct: 1 MESECLTPEWASQPCLMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEE 60
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
KREEL+E LK++ S+GWAVD+IDPRELSAKML KNK NLNEISH+SA+GLI RVL++G+L
Sbjct: 61 KREELYESLKLDKSLGWAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVL 120
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
LTE YLDTVGD +KY+ KLS+RFPSIKFVVSKKADSL+P+VSGASIVAK
Sbjct: 121 LTEAYLDTVGDPDKYRIKLSERFPSIKFVVSKKADSLFPIVSGASIVAK 169
>gi|356536350|ref|XP_003536702.1| PREDICTED: ribonuclease H2 subunit A-like isoform 1 [Glycine max]
Length = 297
Score = 286 bits (732), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 139/169 (82%), Positives = 153/169 (90%), Gaps = 1/169 (0%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
MGS+ LPKWAS PC+MGIDEAGRGPVLGPMVYGCLYC SY +TL+TL+FADSKTLKEE
Sbjct: 1 MGSKI-LPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCSQSYLKTLSTLSFADSKTLKEE 59
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
KREELFE LK+NDS+GW VD+IDPRELSAKML KNKINLNEISH SA+GLI RVL +G+L
Sbjct: 60 KREELFETLKLNDSIGWDVDVIDPRELSAKMLKKNKINLNEISHSSAMGLIDRVLKMGVL 119
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
LTEVY+DTVGDA KY+ KLS FPSIKFVV+KKADSLYPVVSGASIVAK
Sbjct: 120 LTEVYIDTVGDAGKYEMKLSNSFPSIKFVVAKKADSLYPVVSGASIVAK 168
>gi|255640332|gb|ACU20454.1| unknown [Glycine max]
Length = 219
Score = 286 bits (732), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 139/169 (82%), Positives = 153/169 (90%), Gaps = 1/169 (0%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
MGS+ LPKWAS PC+MGIDEAGRGPVLGPMVYGCLYC SY +TL+TL+FADSKTLKEE
Sbjct: 1 MGSKI-LPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCSQSYLKTLSTLSFADSKTLKEE 59
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
KREELFE LK+NDS+GW VD+IDPRELSAKML KNKINLNEISH SA+GLI RVL +G+L
Sbjct: 60 KREELFETLKLNDSIGWDVDVIDPRELSAKMLKKNKINLNEISHSSAMGLIDRVLKMGVL 119
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
LTEVY+DTVGDA KY+ KLS FPSIKFVV+KKADSLYPVVSGASIVAK
Sbjct: 120 LTEVYIDTVGDAGKYEMKLSNSFPSIKFVVAKKADSLYPVVSGASIVAK 168
>gi|297825539|ref|XP_002880652.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297326491|gb|EFH56911.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 296
Score = 286 bits (731), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 132/169 (78%), Positives = 155/169 (91%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
M S+ P+W+S PC+MGIDEAGRGPVLGPMVYGC+YCP SYQ +LA+L+FADSKTLKEE
Sbjct: 1 MESDCLTPEWSSQPCLMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEE 60
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
KREEL+E+LK++ S+GWAVD+IDPRELSAKML KNK NLNEISH+SA+GLI RVL++G+L
Sbjct: 61 KREELYENLKLDKSLGWAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVL 120
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
LTE YLDTVGD EKY+ KLS+RFPSIKFVVSKKADSL+P+VSGASIVAK
Sbjct: 121 LTEAYLDTVGDPEKYRIKLSERFPSIKFVVSKKADSLFPIVSGASIVAK 169
>gi|294464821|gb|ADE77916.1| unknown [Picea sitchensis]
Length = 293
Score = 275 bits (703), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 133/169 (78%), Positives = 149/169 (88%), Gaps = 1/169 (0%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
MGS LP WAS PCIMGIDEAGRGPVLGPMVYGCLYC SYQ+TLATL FADSKTLKEE
Sbjct: 1 MGSNP-LPDWASEPCIMGIDEAGRGPVLGPMVYGCLYCSASYQETLATLKFADSKTLKEE 59
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
KREELFE LK + S+GWAVDIIDPRELSAKML + K+NLN ISHD+A+GL+ VL+ GIL
Sbjct: 60 KREELFESLKADASLGWAVDIIDPRELSAKMLQRIKVNLNTISHDAAMGLVNTVLSKGIL 119
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
L+EVY+DTVGDA+KY+ KL ++FP IKFVVSKKADSLYP+VSGASIVAK
Sbjct: 120 LSEVYVDTVGDADKYRIKLEEKFPGIKFVVSKKADSLYPIVSGASIVAK 168
>gi|21593541|gb|AAM65508.1| putative ribonuclease large subunit [Arabidopsis thaliana]
Length = 280
Score = 264 bits (675), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 123/153 (80%), Positives = 143/153 (93%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
MGIDEAGRGPVLGPMVYGC+YCP SYQ +LA+L+FADSKTLKEEKRE+L+E LK++ S+G
Sbjct: 1 MGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEEKREDLYESLKLDKSLG 60
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
WAVD+IDPRELSAKML KNK NLNEISH+SA+GLI RVL++G+LLTE YLDTVGD +KY+
Sbjct: 61 WAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTVGDPDKYK 120
Query: 137 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KLS+RFPSIKFVVSKKADSL+P+VSGASIVAK
Sbjct: 121 IKLSERFPSIKFVVSKKADSLFPIVSGASIVAK 153
>gi|413916142|gb|AFW56074.1| hypothetical protein ZEAMMB73_446071 [Zea mays]
Length = 297
Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 120/166 (72%), Positives = 147/166 (88%), Gaps = 1/166 (0%)
Query: 5 AALPKWASN-PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKRE 63
A +P+WA+ PC+MGIDEAGRGPVLGPMVYGC+YC CSY TLATL FADSKTLKEE+RE
Sbjct: 3 ALVPEWATKEPCLMGIDEAGRGPVLGPMVYGCVYCACSYNNTLATLKFADSKTLKEEQRE 62
Query: 64 ELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
ELFE LK N S+GW VD+I P++LSAKML ++K+NLNEISH+SA+GL+ +VL++G+LL E
Sbjct: 63 ELFESLKANSSIGWEVDVICPKDLSAKMLKRSKVNLNEISHNSAMGLVRKVLDMGVLLAE 122
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
VY+DTVGD EKY+ KL+++FP +KFVV+KKADSLYPVVSGASI AK
Sbjct: 123 VYVDTVGDPEKYRTKLTEKFPGVKFVVAKKADSLYPVVSGASIAAK 168
>gi|115484243|ref|NP_001065783.1| Os11g0153900 [Oryza sativa Japonica Group]
gi|62701661|gb|AAX92734.1| ribonuclease HII, putative [Oryza sativa Japonica Group]
gi|77548724|gb|ABA91521.1| ribonuclease HI large subunit, putative, expressed [Oryza sativa
Japonica Group]
gi|113644487|dbj|BAF27628.1| Os11g0153900 [Oryza sativa Japonica Group]
gi|125576251|gb|EAZ17473.1| hypothetical protein OsJ_33004 [Oryza sativa Japonica Group]
Length = 298
Score = 263 bits (672), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 122/166 (73%), Positives = 147/166 (88%), Gaps = 1/166 (0%)
Query: 5 AALPKWASN-PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKRE 63
A P+WA+ PC+MGIDEAGRGPVLGPMVYGC+YC SYQ TLATL FADSKTLKEE+RE
Sbjct: 4 AVAPEWATKEPCLMGIDEAGRGPVLGPMVYGCMYCARSYQDTLATLKFADSKTLKEEQRE 63
Query: 64 ELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
ELFE LK N S+GW VD+I P+ELSAKML ++K+NLNEISH+SA+GL+ R L++G+LL E
Sbjct: 64 ELFESLKDNSSIGWEVDVICPKELSAKMLKRSKVNLNEISHNSAMGLVKRALDMGVLLAE 123
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
VY+DTVGDAEKY+ KL+++FP IKFVV+KKADSL+PVVSGASIV+K
Sbjct: 124 VYIDTVGDAEKYRIKLTEKFPGIKFVVAKKADSLFPVVSGASIVSK 169
>gi|125533439|gb|EAY79987.1| hypothetical protein OsI_35154 [Oryza sativa Indica Group]
Length = 298
Score = 263 bits (672), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 122/166 (73%), Positives = 147/166 (88%), Gaps = 1/166 (0%)
Query: 5 AALPKWASN-PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKRE 63
A P+WA+ PC+MGIDEAGRGPVLGPMVYGC+YC SYQ TLATL FADSKTLKEE+RE
Sbjct: 4 AVAPEWATKEPCLMGIDEAGRGPVLGPMVYGCMYCARSYQDTLATLKFADSKTLKEEQRE 63
Query: 64 ELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
ELFE LK N S+GW VD+I P+ELSAKML ++K+NLNEISH+SA+GL+ R L++G+LL E
Sbjct: 64 ELFESLKDNSSIGWEVDVICPKELSAKMLKRSKVNLNEISHNSAMGLVKRALDMGVLLAE 123
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
VY+DTVGDAEKY+ KL+++FP IKFVV+KKADSL+PVVSGASIV+K
Sbjct: 124 VYIDTVGDAEKYRIKLTEKFPGIKFVVAKKADSLFPVVSGASIVSK 169
>gi|242082852|ref|XP_002441851.1| hypothetical protein SORBIDRAFT_08g003480 [Sorghum bicolor]
gi|241942544|gb|EES15689.1| hypothetical protein SORBIDRAFT_08g003480 [Sorghum bicolor]
Length = 297
Score = 263 bits (672), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 123/166 (74%), Positives = 148/166 (89%), Gaps = 1/166 (0%)
Query: 5 AALPKWASN-PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKRE 63
A +P+WA+ PC+MGIDEAGRGPVLGPMVYGC+YC SY TL+TL FADSKTLKEE+RE
Sbjct: 3 APVPEWATKEPCLMGIDEAGRGPVLGPMVYGCMYCARSYNNTLSTLKFADSKTLKEEQRE 62
Query: 64 ELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
ELFE LKVN S+GW VD+I P++LSAKML K+K+NLNEISH+SA+GL+ +VL++GILL E
Sbjct: 63 ELFESLKVNSSIGWEVDVICPKDLSAKMLKKSKVNLNEISHNSAMGLVRKVLDMGILLAE 122
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
VY+DTVGD EKY+ KL+++FP IKFVV+KKADSLYPVVSGASIVAK
Sbjct: 123 VYIDTVGDPEKYRIKLTEKFPGIKFVVAKKADSLYPVVSGASIVAK 168
>gi|242094016|ref|XP_002437498.1| hypothetical protein SORBIDRAFT_10g028180 [Sorghum bicolor]
gi|241915721|gb|EER88865.1| hypothetical protein SORBIDRAFT_10g028180 [Sorghum bicolor]
Length = 297
Score = 263 bits (671), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 122/166 (73%), Positives = 148/166 (89%), Gaps = 1/166 (0%)
Query: 5 AALPKWASN-PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKRE 63
A +P+WA+ PC+MGIDEAGRGPVLGPMVYGC+YC SY TLATL FADSKTLKEE+RE
Sbjct: 3 APVPEWATKEPCLMGIDEAGRGPVLGPMVYGCMYCARSYNNTLATLKFADSKTLKEEQRE 62
Query: 64 ELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
ELFE LKVN S+GW VD+I P++LSAKML K+K+NLNEISH+SA+GL+ ++L++G+LL E
Sbjct: 63 ELFESLKVNSSIGWEVDVICPKDLSAKMLRKSKVNLNEISHNSAMGLVRKLLDMGVLLAE 122
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
VY+DTVGD EKY+ KL+++FP IKFVV+KKADSLYPVVSGASIVAK
Sbjct: 123 VYIDTVGDPEKYRIKLTEKFPGIKFVVAKKADSLYPVVSGASIVAK 168
>gi|225464176|ref|XP_002269852.1| PREDICTED: ribonuclease H2 subunit A isoform 2 [Vitis vinifera]
Length = 278
Score = 257 bits (657), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 125/169 (73%), Positives = 140/169 (82%), Gaps = 19/169 (11%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
MGSE ALPKWAS PC+MGIDEAGRGPVLGPMVYGCLYC SY TL+TLNFADSKTLKEE
Sbjct: 1 MGSETALPKWASEPCMMGIDEAGRGPVLGPMVYGCLYCARSYHNTLSTLNFADSKTLKEE 60
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
KREELFE+LK ++S+GWAVD+IDP ELSAKML K VLN+G+L
Sbjct: 61 KREELFENLKADESIGWAVDVIDPWELSAKMLKK-------------------VLNMGVL 101
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
LTEVY+DTVGDAEKY+ KLS+RFP++KFVV+KKADSLYPVVSGASIVAK
Sbjct: 102 LTEVYVDTVGDAEKYRIKLSERFPAVKFVVAKKADSLYPVVSGASIVAK 150
>gi|357160839|ref|XP_003578893.1| PREDICTED: ribonuclease H2 subunit A-like [Brachypodium distachyon]
Length = 299
Score = 255 bits (651), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 117/162 (72%), Positives = 143/162 (88%), Gaps = 1/162 (0%)
Query: 9 KWASN-PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE 67
+WA+ PCIMGIDEAGRGPVLGPMVYGC++C SY TLATL+FADSKTLKEE+REELFE
Sbjct: 9 EWATKEPCIMGIDEAGRGPVLGPMVYGCMFCARSYHDTLATLSFADSKTLKEEQREELFE 68
Query: 68 DLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD 127
LK N ++GW VD+I P+ELSAKML + K+NLNEISH+SA+GL+ + L++G+LLT+VY+D
Sbjct: 69 TLKTNSAIGWEVDVICPKELSAKMLKRTKVNLNEISHNSAMGLVKKALSMGVLLTDVYID 128
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
TVGD EKY+ KL+++FP I FVV+KKADSLYPVVSGASIVAK
Sbjct: 129 TVGDPEKYRVKLTEKFPGITFVVAKKADSLYPVVSGASIVAK 170
>gi|226500696|ref|NP_001152248.1| ribonuclease HI large subunit [Zea mays]
gi|195654267|gb|ACG46601.1| ribonuclease HI large subunit [Zea mays]
Length = 284
Score = 251 bits (640), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 119/167 (71%), Positives = 145/167 (86%), Gaps = 2/167 (1%)
Query: 5 AALPKWASN-PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKRE 63
A +P+WA+ PC+MGIDEAGRGPVLGPMVYGC+YC SY TLATL FADSKTLKEE+RE
Sbjct: 3 ALVPEWATKEPCLMGIDEAGRGPVLGPMVYGCMYCAYSYNNTLATLKFADSKTLKEEQRE 62
Query: 64 ELFEDLKVNDSVGWAVDIIDPRELSAKML-NKNKINLNEISHDSAIGLITRVLNIGILLT 122
ELFE LKVN S+ W VD+I P+++SAKML K+K+NLNEISH+SA+GL+ +VL +G+LL
Sbjct: 63 ELFESLKVNSSIRWEVDVICPKDISAKMLKKKSKVNLNEISHNSAMGLVRKVLRMGVLLA 122
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
EVY+DTVGD EKY+ KL+++F IKFVV+KKADSLYPV+SGASIVAK
Sbjct: 123 EVYVDTVGDPEKYRTKLTEKFIGIKFVVAKKADSLYPVISGASIVAK 169
>gi|145329613|ref|NP_001077956.1| Ribonuclease H2 subunit A [Arabidopsis thaliana]
gi|330252564|gb|AEC07658.1| Ribonuclease H2 subunit A [Arabidopsis thaliana]
Length = 277
Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 118/169 (69%), Positives = 137/169 (81%), Gaps = 19/169 (11%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
M SE P+WAS PC+MGIDEAGRGPVLGPMVYGC+YCP SYQ +LA+L+FADSKTLKEE
Sbjct: 1 MESECLTPEWASQPCLMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEE 60
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
KREEL+E LK++ S+GWAVD+IDPRELSAKML K VL++G+L
Sbjct: 61 KREELYESLKLDKSLGWAVDVIDPRELSAKMLAK-------------------VLDMGVL 101
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
LTE YLDTVGD +KY+ KLS+RFPSIKFVVSKKADSL+P+VSGASIVAK
Sbjct: 102 LTEAYLDTVGDPDKYRIKLSERFPSIKFVVSKKADSLFPIVSGASIVAK 150
>gi|356536352|ref|XP_003536703.1| PREDICTED: ribonuclease H2 subunit A-like isoform 2 [Glycine max]
Length = 278
Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/169 (72%), Positives = 136/169 (80%), Gaps = 20/169 (11%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
MGS+ LPKWAS PC+MGIDEAGRGPVLGPMVYGCLYC SY +TL+TL+FADSKTLKEE
Sbjct: 1 MGSKI-LPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCSQSYLKTLSTLSFADSKTLKEE 59
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
KREELFE LK+NDS+GW VD+IDPRELSAKML K VL +G+L
Sbjct: 60 KREELFETLKLNDSIGWDVDVIDPRELSAKMLKK-------------------VLKMGVL 100
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
LTEVY+DTVGDA KY+ KLS FPSIKFVV+KKADSLYPVVSGASIVAK
Sbjct: 101 LTEVYIDTVGDAGKYEMKLSNSFPSIKFVVAKKADSLYPVVSGASIVAK 149
>gi|168019116|ref|XP_001762091.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686808|gb|EDQ73195.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 307
Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 106/169 (62%), Positives = 135/169 (79%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
M + +A P W PC++GIDEAGRGPVLGPMVYGC YCP ++ ++TL FADSK L E
Sbjct: 1 MVTGSASPSWKEKPCLLGIDEAGRGPVLGPMVYGCAYCPIDQKERISTLKFADSKALTES 60
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
KREEL+E+LK +D +GWAVD+IDP++LSAKML + K+NLN IS +SA+GLI L++G+
Sbjct: 61 KREELYENLKADDLMGWAVDVIDPKDLSAKMLRRAKVNLNTISFESAMGLIRNTLDLGVF 120
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
LTEV++DTVGD KYQ L+ +FP I+F VSKKADSL+P+VS ASIVAK
Sbjct: 121 LTEVFVDTVGDPGKYQDMLTTKFPGIRFTVSKKADSLFPIVSAASIVAK 169
>gi|356521108|ref|XP_003529200.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease H2 subunit A-like
[Glycine max]
Length = 221
Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/171 (69%), Positives = 137/171 (80%), Gaps = 3/171 (1%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVL--GPMVYGCLYCPCSYQQTLATLNFADSKTLK 58
MGS+ LPKWAS PC+MGIDEAGRGPV+ PMVY LY SY T + L+FADSKTLK
Sbjct: 1 MGSKI-LPKWASKPCVMGIDEAGRGPVIISRPMVYDFLYRAXSYLMTFSMLSFADSKTLK 59
Query: 59 EEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIG 118
EEK+E L+E LK+NDS+G VD+IDPRELS KML KNKINLNEI H SA+ LI +VL +
Sbjct: 60 EEKKEXLYETLKLNDSIGXDVDVIDPRELSTKMLKKNKINLNEILHSSAMSLIDKVLKME 119
Query: 119 ILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+LLTEVY+DT GDA KY+ KL FPSIKFVV+KKADSL P+VSGASIVAK
Sbjct: 120 VLLTEVYIDTFGDARKYEIKLPNSFPSIKFVVAKKADSLXPIVSGASIVAK 170
>gi|384253032|gb|EIE26507.1| ribonuclease HII [Coccomyxa subellipsoidea C-169]
Length = 337
Score = 199 bits (506), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 91/160 (56%), Positives = 124/160 (77%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W + C MGIDEAGRGPVLGPMVYGC Y S + L+ +FADSKTLKEE+RE LF+++
Sbjct: 61 WFAQDCFMGIDEAGRGPVLGPMVYGCAYSAMSQMEALSQRSFADSKTLKEERRESLFQEI 120
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
K + S+G AVDI+D R +SA+ML+ + +LN +++++ LI VL +G+ L EVY+DTV
Sbjct: 121 KEDASIGTAVDILDARTISAQMLHSQRESLNVLANNATFRLIEGVLELGVRLREVYVDTV 180
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G+A ++QA+L++RFP I+F+V KADSLYP+VS ASIVAK
Sbjct: 181 GEASRHQARLTERFPGIRFIVCPKADSLYPIVSAASIVAK 220
>gi|442754225|gb|JAA69272.1| Putative ribonuclease hi [Ixodes ricinus]
Length = 357
Score = 198 bits (503), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 98/168 (58%), Positives = 124/168 (73%), Gaps = 2/168 (1%)
Query: 4 EAALPKWA-SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKR 62
++A+P A SNPC++G+DEAGRGPVLGPMVYG YCP +++ L L FADSKTL EEKR
Sbjct: 17 KSAVPDVAKSNPCMLGVDEAGRGPVLGPMVYGIAYCPVEFEEDLKRLGFADSKTLTEEKR 76
Query: 63 EELFEDLKVN-DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILL 121
EEL ++ + +S+GW V++I P + MLN +K +LN ISHDSAI LI + LN G+ +
Sbjct: 77 EELVGVMEQHSESLGWMVEVISPTVICNHMLNMSKYSLNAISHDSAISLIKQALNDGVCV 136
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
TEVY+DTVG EKYQAKL FP IK V+KKAD +P+VS ASI AK
Sbjct: 137 TEVYVDTVGPPEKYQAKLQDTFPDIKITVAKKADPTFPIVSAASICAK 184
>gi|443699951|gb|ELT99170.1| hypothetical protein CAPTEDRAFT_183401 [Capitella teleta]
Length = 317
Score = 194 bits (494), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 92/162 (56%), Positives = 121/162 (74%), Gaps = 2/162 (1%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
+ PC +GIDEAGRGPVLGPMVYG +CP + ++ L + FADSKTL EEKRE LF+ ++
Sbjct: 39 TEPCCLGIDEAGRGPVLGPMVYGTCFCPIADKERLKEMGFADSKTLTEEKRENLFQKIQA 98
Query: 72 N--DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
D +GWAV I+ P ++S ML ++K NLNE+SHD+AIGLI + L+ G+ + EV++DTV
Sbjct: 99 AEADLIGWAVHILSPNQISNSMLRRSKYNLNELSHDTAIGLIQKALDSGVNVDEVFVDTV 158
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRS 171
G EKYQAKL + FP +K V+KKAD+ YP+VS ASI AK S
Sbjct: 159 GMPEKYQAKLERIFPELKITVAKKADATYPIVSAASICAKVS 200
>gi|427795471|gb|JAA63187.1| Putative ribonuclease hi, partial [Rhipicephalus pulchellus]
Length = 325
Score = 192 bits (489), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 93/158 (58%), Positives = 116/158 (73%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
S PCI+G+DEAGRGPVLGPMVYG YCP S + L L FADSKTL EEKREEL + ++
Sbjct: 50 SEPCILGVDEAGRGPVLGPMVYGIAYCPLSAESQLKELGFADSKTLTEEKREELLKAVEK 109
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
+ +G+ V++I P +S ML+ K +LN ISHDSAIGLI + L+ G+ +T+VY+DTVG
Sbjct: 110 SSFLGFMVEVIPPSVISGHMLDVTKYSLNAISHDSAIGLIRQALDDGVQVTQVYVDTVGP 169
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
EKYQ KL FP IK V+KKAD+ YP+VS ASI AK
Sbjct: 170 PEKYQEKLQALFPDIKVTVAKKADATYPIVSAASICAK 207
>gi|156375344|ref|XP_001630041.1| predicted protein [Nematostella vectensis]
gi|156217054|gb|EDO37978.1| predicted protein [Nematostella vectensis]
Length = 569
Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats.
Identities = 96/173 (55%), Positives = 124/173 (71%), Gaps = 3/173 (1%)
Query: 4 EAALPKWASN-PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKR 62
++ +P+ A N PC +GIDEAGRGPVLGPMVYG YCP S + L T FADSKTL EE+R
Sbjct: 17 KSKIPEIARNEPCCVGIDEAGRGPVLGPMVYGICYCPLSKAEELKTTGFADSKTLTEEER 76
Query: 63 EELFEDLKVN--DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
E LF++L N +GW +DI+ P LS ML + K +LNE+SH+SAIGLI +L+ G+
Sbjct: 77 EALFKELSENCHGYMGWVIDILTPNFLSNCMLQRTKCSLNEVSHNSAIGLIRLLLDSGVK 136
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNF 173
+ EVY+DTVG AEKYQ KL + FP K VV+ KAD+ +PVVS AS+ AK ++
Sbjct: 137 VQEVYVDTVGPAEKYQDKLQKIFPEQKIVVTPKADAKFPVVSAASVCAKGTHL 189
Score = 132 bits (331), Expect = 8e-29, Method: Composition-based stats.
Identities = 68/128 (53%), Positives = 90/128 (70%), Gaps = 2/128 (1%)
Query: 46 LATLNFADSKTLKEEKREELFEDLKVN--DSVGWAVDIIDPRELSAKMLNKNKINLNEIS 103
L ++ DSKTL EE+RE LF++L N +GW +DI+ P LS ML + K +LNE+S
Sbjct: 319 LVAIDTQDSKTLTEEEREALFKELSENCHGYMGWVIDILTPNFLSNCMLQRTKCSLNEVS 378
Query: 104 HDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSG 163
H+SAIGLI +L+ G+ + EVY+DTVG AEKYQ KL + FP K VV+ KAD+ +PVVS
Sbjct: 379 HNSAIGLIRLLLDSGVKVQEVYVDTVGPAEKYQDKLQKIFPEQKIVVTPKADAKFPVVSA 438
Query: 164 ASIVAKRS 171
AS+ AK S
Sbjct: 439 ASVCAKVS 446
>gi|432844392|ref|XP_004065747.1| PREDICTED: ribonuclease H2 subunit A-like [Oryzias latipes]
Length = 306
Score = 191 bits (486), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 93/156 (59%), Positives = 113/156 (72%), Gaps = 1/156 (0%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVND 73
C +GIDEAGRGPVLGPMVYG +CP S +Q L L ADSKTL EE+RE LF +L +
Sbjct: 29 CCLGIDEAGRGPVLGPMVYGICFCPVSKKQELKDLKVADSKTLTEEERERLFHNLDEAKS 88
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+ ++ P +S ML + K NLN +SHD+AIGLI L+ G+ L E+Y+DTVG AE
Sbjct: 89 YVGWALHVLSPNTISTSMLQRTKYNLNALSHDTAIGLIQYALDSGVQLKEIYVDTVGPAE 148
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KY+ KLSQRFP I+ V KADSL+PVVS ASI AK
Sbjct: 149 KYEEKLSQRFPGIEVTVRPKADSLFPVVSAASICAK 184
>gi|157136849|ref|XP_001656938.1| ribonuclease hi large subunit [Aedes aegypti]
gi|108880967|gb|EAT45192.1| AAEL003510-PA [Aedes aegypti]
Length = 335
Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 90/163 (55%), Positives = 117/163 (71%), Gaps = 4/163 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG +CP + ++ L L FADSK L EEKR+ +F+++ D
Sbjct: 59 PCVLGVDEAGRGPVLGPMVYGIAFCPITKKEVLKKLGFADSKQLTEEKRDVIFDEMNQKD 118
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
S+GWAV++I P ++ ML + K +LNE+S DSAIGLI + + G+ + EVY+DTV
Sbjct: 119 YAVESIGWAVEVIAPNDICMSMLRRTKRSLNEVSMDSAIGLIRKAIEAGVNIAEVYVDTV 178
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSN 172
G EKYQAKL Q FP K V+KKADS YP+VS ASI AK S
Sbjct: 179 GPPEKYQAKLKQIFPKFKITVAKKADSTYPIVSAASICAKVSR 221
>gi|346466461|gb|AEO33075.1| hypothetical protein [Amblyomma maculatum]
Length = 339
Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 95/159 (59%), Positives = 116/159 (72%), Gaps = 1/159 (0%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
+ PCI+G+DEAGRGPVLGPMVYG +YCP S + L L FADSKTL EEKREEL ++
Sbjct: 60 TEPCILGVDEAGRGPVLGPMVYGIVYCPISSKDQLKELGFADSKTLTEEKREELLSVIER 119
Query: 72 NDS-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
N S +G+ V++I P +S +ML+ +K NLN ISHDSAIGLI R G+ + EVY+DTVG
Sbjct: 120 NSSFLGFMVELISPVVISERMLHVSKYNLNSISHDSAIGLIRRAQEEGVNVAEVYVDTVG 179
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
EKYQ KL FP IK V+KKAD+ YP+VS ASI AK
Sbjct: 180 PPEKYQKKLEDCFPGIKVTVAKKADATYPIVSAASICAK 218
>gi|321469942|gb|EFX80920.1| hypothetical protein DAPPUDRAFT_230884 [Daphnia pulex]
Length = 307
Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 95/158 (60%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KV 71
PC +GIDEAGRGPVLGPMVYG YCP S + L + ADSKTL EE+RE+LF L +
Sbjct: 29 QPCALGIDEAGRGPVLGPMVYGITYCPESRAEELKAIGCADSKTLTEEQREKLFGKLDSL 88
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
D VGWAV++I P + M + K +LNE+SHDSAIGLI + L++ +T V++DTVG
Sbjct: 89 QDFVGWAVEVISPNSICNNMFKRLKHSLNEVSHDSAIGLIRKALSLEANITSVFVDTVGP 148
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
EKYQAKLS FP IK VSKKADSL+PVVS ASI AK
Sbjct: 149 PEKYQAKLSALFPGIKITVSKKADSLFPVVSAASICAK 186
>gi|327281022|ref|XP_003225249.1| PREDICTED: ribonuclease H2 subunit A-like [Anolis carolinensis]
Length = 300
Score = 189 bits (479), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 91/159 (57%), Positives = 112/159 (70%), Gaps = 1/159 (0%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
+ PC +GIDEAGRGPVLGPMVYG YCP + Q L + ADSKTL E +RE+LFE L
Sbjct: 26 TQPCCLGIDEAGRGPVLGPMVYGICYCPVARQGDLEAIKVADSKTLTEAQREQLFEKLDA 85
Query: 72 -NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
D VGWA+ I+ P +S M + K NLN +SHD+AIGLI L+ G+ + EV++DTVG
Sbjct: 86 AKDFVGWALHILSPNFISTSMQRRAKYNLNALSHDTAIGLIQHALDSGVQVAEVFVDTVG 145
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
AEKYQ KL Q+FP ++ V KADSL+PVVS ASI AK
Sbjct: 146 PAEKYQEKLKQQFPGLEVTVKPKADSLFPVVSAASICAK 184
>gi|194766523|ref|XP_001965374.1| GF24795 [Drosophila ananassae]
gi|190617984|gb|EDV33508.1| GF24795 [Drosophila ananassae]
Length = 347
Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 88/160 (55%), Positives = 115/160 (71%), Gaps = 4/160 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP ++ L L ADSK L EEKR+ +F D+ D
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGIAYCPLESKKALEDLGCADSKQLTEEKRDIIFNDINTKD 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+GWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ ++EVY+DTV
Sbjct: 130 YATSCIGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNISEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G EKYQ KL +RFP+ K V+KKADS YP+VS ASI AK
Sbjct: 190 GPPEKYQEKLLKRFPTFKITVAKKADSTYPIVSAASICAK 229
>gi|195470258|ref|XP_002087425.1| GE16128 [Drosophila yakuba]
gi|194173526|gb|EDW87137.1| GE16128 [Drosophila yakuba]
Length = 347
Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 114/160 (71%), Gaps = 4/160 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP ++ L L ADSK L EEKR+ +F D+ D
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESKKALEDLGCADSKQLTEEKRDIIFNDINTKD 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+GWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCIGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G EKYQ KL +RFPS K V+KKADS YP+VS ASI AK
Sbjct: 190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAK 229
>gi|320168268|gb|EFW45167.1| ribonuclease H2 [Capsaspora owczarzaki ATCC 30864]
Length = 385
Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 90/166 (54%), Positives = 118/166 (71%), Gaps = 1/166 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVN 72
PC +GIDEAGRGPVLGPMVYG YCP S L + F DSK L E R LF+D+ K N
Sbjct: 109 PCCLGIDEAGRGPVLGPMVYGISYCPLSDDPRLRQMGFDDSKKLDEPTRRRLFDDINKAN 168
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D +G++V +I P+++S+ ML + K NLN +SHD+A+ L+ R L+ G+ + +V++DTVG A
Sbjct: 169 DFMGFSVCVISPQDISSSMLRRAKYNLNALSHDTAMSLVQRALDDGVNIAKVFVDTVGTA 228
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMDI 178
E YQ KLS+RFP I+F VS KADSL+P+VS ASI AK +DI
Sbjct: 229 ETYQEKLSERFPGIEFKVSAKADSLFPIVSAASICAKVVRDHVLDI 274
>gi|195118270|ref|XP_002003663.1| GI18036 [Drosophila mojavensis]
gi|193914238|gb|EDW13105.1| GI18036 [Drosophila mojavensis]
Length = 342
Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 89/161 (55%), Positives = 115/161 (71%), Gaps = 4/161 (2%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV- 71
PC++G+DEAGRGPVLGPMVYG YCP + ++ L L ADSK L EEKR+ +F D+
Sbjct: 64 QPCMLGVDEAGRGPVLGPMVYGISYCPLNSKEALVELGCADSKQLTEEKRDIIFNDMNTL 123
Query: 72 ---NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
N +GWAV+II P +S M ++K +LNE+S DSA+GLI R ++ G+ + EVY+DT
Sbjct: 124 EYANSCIGWAVEIISPNVISNSMYRRSKCSLNEVSMDSAMGLIQRAIDAGVNIAEVYVDT 183
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
VG EKYQ KL +RFP+ K V+KKADS YP+VS ASI AK
Sbjct: 184 VGPPEKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAK 224
>gi|195388322|ref|XP_002052829.1| GJ19740 [Drosophila virilis]
gi|194149286|gb|EDW64984.1| GJ19740 [Drosophila virilis]
Length = 339
Score = 185 bits (470), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 90/161 (55%), Positives = 112/161 (69%), Gaps = 4/161 (2%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV- 71
PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L EEKRE +F DL
Sbjct: 61 QPCMLGVDEAGRGPVLGPMVYGISYCPLERKSALVELGCADSKQLTEEKREIIFNDLNTL 120
Query: 72 ---NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
N +GWAV+II P +S+ M + K +LNE+S DSA+GLI ++ G+ + EVY+DT
Sbjct: 121 EYANSCIGWAVEIISPNVISSSMYRRTKCSLNEVSMDSAMGLIQEAIDAGVNIAEVYVDT 180
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
VG EKYQ KL +RFP+ K V+KKADS YP+VS ASI AK
Sbjct: 181 VGPPEKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAK 221
>gi|194853461|ref|XP_001968168.1| GG24650 [Drosophila erecta]
gi|190660035|gb|EDV57227.1| GG24650 [Drosophila erecta]
Length = 347
Score = 185 bits (469), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 114/160 (71%), Gaps = 4/160 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP ++ L L ADSK L EEKR+ +F D+ D
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESKKPLEDLGCADSKQLTEEKRDIIFNDINTKD 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+GWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCIGWAVEIISPSTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G EKYQ KL +RFPS K V+KKADS YP+VS ASI AK
Sbjct: 190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAK 229
>gi|260781395|ref|XP_002585798.1| hypothetical protein BRAFLDRAFT_233701 [Branchiostoma floridae]
gi|229270848|gb|EEN41809.1| hypothetical protein BRAFLDRAFT_233701 [Branchiostoma floridae]
Length = 301
Score = 185 bits (469), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 90/157 (57%), Positives = 112/157 (71%), Gaps = 1/157 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK-VN 72
PC +GIDEAGRGPVLGPMVYG YCP S Q L + FADSKTL EE+RE+LFE +
Sbjct: 28 PCCLGIDEAGRGPVLGPMVYGICYCPLSGQDRLKDMGFADSKTLTEEQREKLFEAIAGAG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ +GW + I+ P +S ML ++K NLN +SHD+AIGLI R L+ G+ L EVY+DTVGDA
Sbjct: 88 EFMGWTIHILAPNAISNCMLRRSKYNLNTLSHDTAIGLIQRTLDSGVNLQEVYVDTVGDA 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KYQ KL FP + V+ KAD+ +P+VS ASI AK
Sbjct: 148 TKYQDKLKGIFPDLDITVTPKADAKFPIVSAASICAK 184
>gi|260794677|ref|XP_002592334.1| hypothetical protein BRAFLDRAFT_285333 [Branchiostoma floridae]
gi|229277552|gb|EEN48345.1| hypothetical protein BRAFLDRAFT_285333 [Branchiostoma floridae]
Length = 303
Score = 185 bits (469), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 90/157 (57%), Positives = 112/157 (71%), Gaps = 1/157 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK-VN 72
PC +GIDEAGRGPVLGPMVYG YCP S Q L + FADSKTL EE+RE+LFE +
Sbjct: 28 PCCLGIDEAGRGPVLGPMVYGICYCPLSGQDRLKDMGFADSKTLTEEQREKLFEAIAGAG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ +GW + I+ P +S ML ++K NLN +SHD+AIGLI R L+ G+ L EVY+DTVGDA
Sbjct: 88 EFMGWTIHILAPNAISNCMLRRSKYNLNTLSHDTAIGLIQRTLDSGVNLQEVYVDTVGDA 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KYQ KL FP + V+ KAD+ +P+VS ASI AK
Sbjct: 148 TKYQDKLKGIFPDLDITVTPKADAKFPIVSAASICAK 184
>gi|405952554|gb|EKC20351.1| Ribonuclease H2 subunit A [Crassostrea gigas]
Length = 299
Score = 184 bits (468), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 89/159 (55%), Positives = 115/159 (72%), Gaps = 1/159 (0%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-K 70
+ PC +GIDEAGRGPVLGPMVYG + P S ++ + FADSKTL EE+RE +FE +
Sbjct: 26 TEPCWLGIDEAGRGPVLGPMVYGICFSPLSLREKFGEMGFADSKTLTEEEREGIFERICA 85
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
+D + W V+++ P +S ML+++K NLN ISHD AI L+ R L +G + EVY+DTVG
Sbjct: 86 ASDMMAWIVELLSPTFISNGMLSRSKYNLNAISHDCAIRLVQRALELGANIAEVYVDTVG 145
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
D EKYQAKL FP+I+ V+KKADSLYP+VS ASI AK
Sbjct: 146 DPEKYQAKLRNLFPNIQITVAKKADSLYPIVSAASICAK 184
>gi|195032708|ref|XP_001988545.1| GH10519 [Drosophila grimshawi]
gi|193904545|gb|EDW03412.1| GH10519 [Drosophila grimshawi]
Length = 334
Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 90/161 (55%), Positives = 112/161 (69%), Gaps = 4/161 (2%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV- 71
PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L EEKR+ +F DL
Sbjct: 56 QPCMLGVDEAGRGPVLGPMVYGISYCPLESKSVLVELGCADSKQLTEEKRDIIFNDLNTL 115
Query: 72 ---NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
N +GWAV+II P +S+ M + K +LNEIS DSA+GLI ++ G+ + EVY+DT
Sbjct: 116 EYANSCIGWAVEIISPNVISSSMYRRTKCSLNEISMDSAMGLIQHAIDAGVNIAEVYVDT 175
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
VG EKYQ KL +RFP+ K V+KKADS YP+VS ASI AK
Sbjct: 176 VGPPEKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAK 216
>gi|158297564|ref|XP_317779.3| AGAP007741-PA [Anopheles gambiae str. PEST]
gi|157015256|gb|EAA12465.3| AGAP007741-PA [Anopheles gambiae str. PEST]
Length = 342
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 114/160 (71%), Gaps = 4/160 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG +CP S + L L FADSK L EEKR+++F+++ D
Sbjct: 65 PCMLGVDEAGRGPVLGPMVYGIAFCPLSKKDILKQLGFADSKQLTEEKRDQIFDEMNRKD 124
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
++GWAV+ I P +S ML + K +LNE+S DSAIGLI ++ G+ + EVY+DTV
Sbjct: 125 FAKTALGWAVEAISPNVISMCMLRRTKHSLNEVSMDSAIGLINSAIDAGVNIAEVYVDTV 184
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G EKYQAKL FP K V+KKADS YP+VS ASI AK
Sbjct: 185 GPPEKYQAKLKAIFPKFKITVAKKADSTYPIVSAASIAAK 224
>gi|195456019|ref|XP_002074967.1| GK22869 [Drosophila willistoni]
gi|194171052|gb|EDW85953.1| GK22869 [Drosophila willistoni]
Length = 336
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/161 (55%), Positives = 115/161 (71%), Gaps = 4/161 (2%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
PC++G+DEAGRGPVLGPMVYG YCP +Q L L ADSK L EEKR+ +F +L
Sbjct: 58 QPCMLGVDEAGRGPVLGPMVYGISYCPLESKQALIDLGCADSKQLTEEKRDIIFNELNTL 117
Query: 73 D----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
D +GWAV+II P +S+ M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DT
Sbjct: 118 DYATECIGWAVEIISPNVISSSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVQIAEVYVDT 177
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
VG EKYQ KL +RFP+ K V+KKADS YP+VS ASI AK
Sbjct: 178 VGPPEKYQEKLLRRFPNFKITVAKKADSTYPIVSAASICAK 218
>gi|28374439|gb|AAH46061.1| Ribonuclease H2, subunit A [Danio rerio]
Length = 307
Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 91/156 (58%), Positives = 111/156 (71%), Gaps = 1/156 (0%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
C +GIDEAGRGPVLGPMVYG +CP S ++ L L ADSKTL E +RE LF L S
Sbjct: 29 CCLGIDEAGRGPVLGPMVYGICFCPVSRKEDLKNLKVADSKTLTEAERENLFVKLDEAKS 88
Query: 75 -VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+ I+ P +S ML + K NLN +SHD+AIGL+ L+ G+ L EV++DTVG AE
Sbjct: 89 FVGWALQILSPNMISTSMLQRAKYNLNALSHDAAIGLVQYALDSGVQLKEVFVDTVGPAE 148
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KYQ KLSQRFP ++ V KADSL+P+VS ASI AK
Sbjct: 149 KYQDKLSQRFPGVEVTVRPKADSLFPIVSAASICAK 184
>gi|37362282|gb|AAQ91269.1| ribonuclease H2, large subunit [Danio rerio]
Length = 307
Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/156 (58%), Positives = 111/156 (71%), Gaps = 1/156 (0%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
C +GIDEAGRGPVLGPMVYG +CP S ++ L L ADSKTL E +RE LF L S
Sbjct: 29 CCLGIDEAGRGPVLGPMVYGICFCPVSRKEDLKNLKVADSKTLTEAERENLFVKLDEAKS 88
Query: 75 -VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+ I+ P +S ML + K NLN +SHD+AIGL+ L+ G+ L EV++DTVG AE
Sbjct: 89 FVGWALQILSPNMISTSMLQRAKYNLNALSHDAAIGLVQYALDSGVQLKEVFVDTVGPAE 148
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KYQ KLSQRFP ++ V KADSL+P+VS ASI AK
Sbjct: 149 KYQDKLSQRFPGVEVTVRPKADSLFPIVSAASICAK 184
>gi|48762662|ref|NP_956520.2| ribonuclease H2 subunit A [Danio rerio]
gi|47938809|gb|AAH71375.1| Ribonuclease H2, subunit A [Danio rerio]
Length = 307
Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/156 (58%), Positives = 111/156 (71%), Gaps = 1/156 (0%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
C +GIDEAGRGPVLGPMVYG +CP S ++ L L ADSKTL E +RE LF L S
Sbjct: 29 CCLGIDEAGRGPVLGPMVYGICFCPVSRKEDLKNLKVADSKTLTEAERENLFVKLDEAKS 88
Query: 75 -VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+ I+ P +S ML + K NLN +SHD+AIGL+ L+ G+ L EV++DTVG AE
Sbjct: 89 FVGWALQILSPNMISTSMLQRAKYNLNALSHDAAIGLVQYALDSGVQLKEVFVDTVGPAE 148
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KYQ KLSQRFP ++ V KADSL+P+VS ASI AK
Sbjct: 149 KYQDKLSQRFPGVEVTVRPKADSLFPIVSAASICAK 184
>gi|223967509|emb|CAR93485.1| CG13690-PA [Drosophila melanogaster]
Length = 347
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 113/160 (70%), Gaps = 4/160 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L EEKR+ +F D+ +
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEEKRDIIFNDINTKE 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G EKYQ KL +RFPS K V+KKADS YP+VS ASI AK
Sbjct: 190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAK 229
>gi|170049569|ref|XP_001857534.1| ribonuclease H2 subunit A [Culex quinquefasciatus]
gi|167871354|gb|EDS34737.1| ribonuclease H2 subunit A [Culex quinquefasciatus]
Length = 334
Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/163 (54%), Positives = 115/163 (70%), Gaps = 4/163 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG + P + L L FADSK L EEKRE +F+++ D
Sbjct: 58 PCVLGVDEAGRGPVLGPMVYGIAFSPIDKKDVLKKLGFADSKQLTEEKREHIFDEMNKQD 117
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
S+GWAV++I P ++S ML ++K +LNE+S DSAIGLI + + G+ + EVY+DTV
Sbjct: 118 FATESIGWAVEVISPNDISMSMLRRSKRSLNEVSMDSAIGLIHKAIEAGVNIAEVYVDTV 177
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSN 172
G EKYQAKL FP+ K V+KKADS Y +VS ASI AK S
Sbjct: 178 GPPEKYQAKLKLIFPNFKITVAKKADSTYLIVSAASICAKVSR 220
>gi|397487580|ref|XP_003814870.1| PREDICTED: ribonuclease H2 subunit A [Pan paniscus]
gi|426387370|ref|XP_004060142.1| PREDICTED: ribonuclease H2 subunit A [Gorilla gorilla gorilla]
Length = 299
Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/157 (55%), Positives = 109/157 (69%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++
Sbjct: 27 EPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLLESERERLFAKMEDT 86
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG
Sbjct: 87 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMP 146
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQA+L Q FP I+ V KAD+LYPVVS ASI AK
Sbjct: 147 ETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAK 183
>gi|402904417|ref|XP_003915042.1| PREDICTED: ribonuclease H2 subunit A [Papio anubis]
gi|355703198|gb|EHH29689.1| Ribonuclease H2 subunit A [Macaca mulatta]
gi|380808814|gb|AFE76282.1| ribonuclease H2 subunit A [Macaca mulatta]
gi|383415189|gb|AFH30808.1| ribonuclease H2 subunit A [Macaca mulatta]
gi|384944794|gb|AFI36002.1| ribonuclease H2 subunit A [Macaca mulatta]
Length = 300
Score = 182 bits (463), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 111/157 (70%), Gaps = 1/157 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S+ L L ADSKTL E +RE LF ++ N
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSHLADLEALKVADSKTLLESERERLFAKMEENR 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQA+L Q FP I+ V KAD+LYPVVS ASI AK
Sbjct: 148 ETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAK 184
>gi|109123571|ref|XP_001109423.1| PREDICTED: ribonuclease H2 subunit A isoform 2 [Macaca mulatta]
Length = 300
Score = 182 bits (463), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 111/157 (70%), Gaps = 1/157 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S+ L L ADSKTL E +RE LF ++ N
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSHLADLEALKVADSKTLLESERERLFAKMEENR 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQA+L Q FP I+ V KAD+LYPVVS ASI AK
Sbjct: 148 ETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAK 184
>gi|348520822|ref|XP_003447926.1| PREDICTED: ribonuclease H2 subunit A-like [Oreochromis niloticus]
Length = 308
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 89/156 (57%), Positives = 111/156 (71%), Gaps = 1/156 (0%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVND 73
C +GIDEAGRGPVLGPMVYG +CP S ++ L + ADSKTL E +RE LFE L +
Sbjct: 29 CCLGIDEAGRGPVLGPMVYGICFCPLSKKEELKDMKVADSKTLTEAERENLFEKLVEAKS 88
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+ I+ P +S ML + K NLN +SHD+AI L+ L+ G+ L E+Y+DTVG A+
Sbjct: 89 YVGWALQILSPNTISTCMLRRTKYNLNALSHDTAIDLVQYALDSGVQLKEIYVDTVGPAD 148
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KY+ KLSQRFP I+ V KADSL+PVVS ASI AK
Sbjct: 149 KYEVKLSQRFPGIQVTVRPKADSLFPVVSAASICAK 184
>gi|195147238|ref|XP_002014587.1| GL19264 [Drosophila persimilis]
gi|194106540|gb|EDW28583.1| GL19264 [Drosophila persimilis]
Length = 340
Score = 182 bits (462), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 113/160 (70%), Gaps = 4/160 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV-- 71
PC++G+DEAGRGPVLGPMVYG YCP +Q L L ADSK L EEKR+ +F +L
Sbjct: 63 PCMLGVDEAGRGPVLGPMVYGISYCPLESKQALIDLGCADSKQLTEEKRDVIFNELNTLE 122
Query: 72 --NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
N VGWAV+II P +S M + K +LNE+S +SA+GLI + ++ G+ + EVY+DTV
Sbjct: 123 YANSCVGWAVEIISPNVISTSMYRRAKCSLNEVSMESAMGLIQQAIDAGVNIAEVYVDTV 182
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G EKYQ KL +RFP+ K V+KKADS YP+VS ASI AK
Sbjct: 183 GPPEKYQEKLLRRFPNFKITVAKKADSTYPIVSAASICAK 222
>gi|198428317|ref|XP_002127465.1| PREDICTED: similar to ribonuclease H2, large subunit [Ciona
intestinalis]
Length = 292
Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 92/160 (57%), Positives = 111/160 (69%), Gaps = 1/160 (0%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL- 69
S PC +GIDEAGRGPVLGPMVY + P S + LA L DSK LKEE+RE LFE L
Sbjct: 25 TSEPCCLGIDEAGRGPVLGPMVYASCFTPISCKDKLAGLGCDDSKVLKEEQRESLFETLN 84
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
K ++ +GW + I+ P +S ML ++K NLN ISHD+AI LI L +G+ +TEVY+DTV
Sbjct: 85 KASEYIGWMIHILSPAYISTSMLGRSKYNLNSISHDTAIDLIRSALKLGVEVTEVYVDTV 144
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G + Y KL + FPSIKF V KKADS YPVVS ASI AK
Sbjct: 145 GPPQTYAEKLKKIFPSIKFTVEKKADSKYPVVSAASICAK 184
>gi|55648379|ref|XP_512415.1| PREDICTED: ribonuclease H2 subunit A isoform 2 [Pan troglodytes]
gi|410226906|gb|JAA10672.1| ribonuclease H2, subunit A [Pan troglodytes]
gi|410251426|gb|JAA13680.1| ribonuclease H2, subunit A [Pan troglodytes]
gi|410287834|gb|JAA22517.1| ribonuclease H2, subunit A [Pan troglodytes]
gi|410328555|gb|JAA33224.1| ribonuclease H2, subunit A [Pan troglodytes]
Length = 299
Score = 182 bits (461), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 87/157 (55%), Positives = 108/157 (68%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++
Sbjct: 27 EPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLLESERERLFAKMEDT 86
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GLI L G+ +T+V++DTVG
Sbjct: 87 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALYQGVNVTQVFVDTVGMP 146
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQA+L Q FP I+ V KAD+LYPVVS ASI AK
Sbjct: 147 ETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAK 183
>gi|61557385|ref|NP_001013252.1| ribonuclease H2 subunit A [Rattus norvegicus]
gi|81889649|sp|Q5U209.1|RNH2A_RAT RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|55562777|gb|AAH86345.1| Rnaseh2a protein [Rattus norvegicus]
gi|55824706|gb|AAH86539.1| Ribonuclease H2, subunit A [Rattus norvegicus]
gi|149037817|gb|EDL92177.1| ribonuclease H2, large subunit, isoform CRA_a [Rattus norvegicus]
gi|149037820|gb|EDL92180.1| ribonuclease H2, large subunit, isoform CRA_a [Rattus norvegicus]
Length = 301
Score = 182 bits (461), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 87/157 (55%), Positives = 111/157 (70%), Gaps = 1/157 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+DI+ P +S ML + K NLN +SHD+A GLI ++ + +T+V++DTVG
Sbjct: 88 DFVGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVTQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQA+L QRFP I+ V KADSL+PVVS ASI+AK
Sbjct: 148 ETYQARLQQRFPGIEVTVKAKADSLFPVVSAASIIAK 184
>gi|344244502|gb|EGW00606.1| Ribonuclease H2 subunit A [Cricetulus griseus]
Length = 312
Score = 182 bits (461), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 111/157 (70%), Gaps = 1/157 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFSKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+DI+ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG
Sbjct: 88 DFVGWALDILSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQGVNVTQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQA+L QRFP ++ V KADSL+PVVS ASI AK
Sbjct: 148 ETYQARLQQRFPGMEVTVKAKADSLFPVVSAASIFAK 184
>gi|354479535|ref|XP_003501965.1| PREDICTED: ribonuclease H2 subunit A-like [Cricetulus griseus]
Length = 302
Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 111/157 (70%), Gaps = 1/157 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFSKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+DI+ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG
Sbjct: 88 DFVGWALDILSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQGVNVTQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQA+L QRFP ++ V KADSL+PVVS ASI AK
Sbjct: 148 ETYQARLQQRFPGMEVTVKAKADSLFPVVSAASIFAK 184
>gi|149037818|gb|EDL92178.1| ribonuclease H2, large subunit, isoform CRA_b [Rattus norvegicus]
gi|149037821|gb|EDL92181.1| ribonuclease H2, large subunit, isoform CRA_b [Rattus norvegicus]
Length = 282
Score = 181 bits (460), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 87/157 (55%), Positives = 111/157 (70%), Gaps = 1/157 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+DI+ P +S ML + K NLN +SHD+A GLI ++ + +T+V++DTVG
Sbjct: 88 DFVGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVTQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQA+L QRFP I+ V KADSL+PVVS ASI+AK
Sbjct: 148 ETYQARLQQRFPGIEVTVKAKADSLFPVVSAASIIAK 184
>gi|198473777|ref|XP_001356439.2| GA12461 [Drosophila pseudoobscura pseudoobscura]
gi|198138103|gb|EAL33503.2| GA12461 [Drosophila pseudoobscura pseudoobscura]
Length = 340
Score = 181 bits (460), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 88/160 (55%), Positives = 113/160 (70%), Gaps = 4/160 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV-- 71
PC++G+DEAGRGPVLGPMVYG YCP +Q L L ADSK L EEKR+ +F ++
Sbjct: 63 PCMLGVDEAGRGPVLGPMVYGISYCPLESKQALIDLGCADSKQLTEEKRDVIFNEMNTLE 122
Query: 72 --NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
N VGWAV+II P +S M + K +LNE+S +SA+GLI + ++ G+ + EVY+DTV
Sbjct: 123 YANSCVGWAVEIISPNVISTSMYRRAKCSLNEVSMESAMGLIQQAIDAGVNIAEVYVDTV 182
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G EKYQ KL +RFP+ K V+KKADS YP+VS ASI AK
Sbjct: 183 GPPEKYQEKLLRRFPNFKITVAKKADSTYPIVSAASICAK 222
>gi|38455391|ref|NP_006388.2| ribonuclease H2 subunit A [Homo sapiens]
gi|20981704|sp|O75792.2|RNH2A_HUMAN RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Aicardi-Goutieres syndrome 4 protein;
Short=AGS4; AltName: Full=RNase H(35); AltName:
Full=Ribonuclease HI large subunit; Short=RNase HI large
subunit; AltName: Full=Ribonuclease HI subunit A
gi|15079910|gb|AAH11748.1| Ribonuclease H2, subunit A [Homo sapiens]
gi|119604719|gb|EAW84313.1| ribonuclease H2, large subunit [Homo sapiens]
gi|189067523|dbj|BAG37728.1| unnamed protein product [Homo sapiens]
Length = 299
Score = 181 bits (459), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 86/156 (55%), Positives = 108/156 (69%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVY YCP L L ADSKTL E +RE LF ++ D
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTD 87
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E
Sbjct: 88 FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPE 147
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
YQA+L Q FP I+ V KAD+LYPVVS ASI AK
Sbjct: 148 TYQARLQQSFPGIEVTVKAKADALYPVVSAASICAK 183
>gi|315364763|pdb|3PUF|A Chain A, Crystal Structure Of Human Rnase H2 Complex
gi|315364766|pdb|3PUF|D Chain D, Crystal Structure Of Human Rnase H2 Complex
gi|315364769|pdb|3PUF|G Chain G, Crystal Structure Of Human Rnase H2 Complex
gi|315364772|pdb|3PUF|J Chain J, Crystal Structure Of Human Rnase H2 Complex
gi|315364775|pdb|3PUF|M Chain M, Crystal Structure Of Human Rnase H2 Complex
gi|315364778|pdb|3PUF|P Chain P, Crystal Structure Of Human Rnase H2 Complex
Length = 302
Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/156 (55%), Positives = 108/156 (69%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVY YCP L L ADSKTL E +RE LF ++ D
Sbjct: 31 PCVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTD 90
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E
Sbjct: 91 FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPE 150
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
YQA+L Q FP I+ V KAD+LYPVVS ASI AK
Sbjct: 151 TYQARLQQSFPGIEVTVKAKADALYPVVSAASICAK 186
>gi|48145799|emb|CAG33122.1| JUNB [Homo sapiens]
Length = 299
Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/156 (55%), Positives = 108/156 (69%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVY YCP L L ADSKTL E +RE LF ++ D
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTD 87
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E
Sbjct: 88 FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPE 147
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
YQA+L Q FP I+ V KAD+LYPVVS ASI AK
Sbjct: 148 TYQARLQQSFPGIEVTVKAKADALYPVVSAASICAK 183
>gi|332252995|ref|XP_003275638.1| PREDICTED: ribonuclease H2 subunit A [Nomascus leucogenys]
Length = 299
Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 87/157 (55%), Positives = 108/157 (68%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++
Sbjct: 27 EPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLLESERERLFAKMEDR 86
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG
Sbjct: 87 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMP 146
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQA L Q FP I+ V KAD+LYPVVS ASI AK
Sbjct: 147 ETYQAWLQQSFPGIEVTVKAKADALYPVVSAASICAK 183
>gi|3334761|emb|CAB09725.1| ribonuclease HI large subunit [Homo sapiens]
Length = 299
Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/156 (55%), Positives = 108/156 (69%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVY YCP L L ADSKTL E +RE LF ++ D
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTD 87
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E
Sbjct: 88 FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPE 147
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
YQA+L Q FP I+ V KAD+LYPVVS ASI AK
Sbjct: 148 TYQAQLQQSFPGIEVTVKAKADALYPVVSAASICAK 183
>gi|223967505|emb|CAR93483.1| CG13690-PA [Drosophila melanogaster]
Length = 347
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/160 (55%), Positives = 112/160 (70%), Gaps = 4/160 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L E KR+ +F D+ +
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESNKALEVLGCADSKQLTEGKRDIIFNDINTKE 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G EKYQ KL +RFPS K V+KKADS YP+VS ASI AK
Sbjct: 190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAK 229
>gi|116806092|emb|CAL26429.1| CG13690 [Drosophila melanogaster]
gi|116806094|emb|CAL26430.1| CG13690 [Drosophila melanogaster]
gi|116806102|emb|CAL26434.1| CG13690 [Drosophila melanogaster]
Length = 347
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/160 (55%), Positives = 112/160 (70%), Gaps = 4/160 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L E KR+ +F D+ +
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKE 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G EKYQ KL +RFPS K V+KKADS YP+VS ASI AK
Sbjct: 190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAK 229
>gi|116806098|emb|CAL26432.1| CG13690 [Drosophila melanogaster]
Length = 347
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/160 (55%), Positives = 112/160 (70%), Gaps = 4/160 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L E KR+ +F D+ +
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKE 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G EKYQ KL +RFPS K V+KKADS YP+VS ASI AK
Sbjct: 190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAK 229
>gi|24580635|ref|NP_608521.1| CG13690 [Drosophila melanogaster]
gi|11387117|sp|Q9VPP5.1|RNH2A_DROME RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|7296208|gb|AAF51500.1| CG13690 [Drosophila melanogaster]
gi|66772719|gb|AAY55671.1| IP10665p [Drosophila melanogaster]
gi|220951678|gb|ACL88382.1| CG13690-PA [synthetic construct]
gi|223967491|emb|CAR93476.1| CG13690-PA [Drosophila melanogaster]
gi|223967495|emb|CAR93478.1| CG13690-PA [Drosophila melanogaster]
gi|223967497|emb|CAR93479.1| CG13690-PA [Drosophila melanogaster]
gi|223967507|emb|CAR93484.1| CG13690-PA [Drosophila melanogaster]
Length = 347
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/160 (55%), Positives = 112/160 (70%), Gaps = 4/160 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L E KR+ +F D+ +
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKE 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G EKYQ KL +RFPS K V+KKADS YP+VS ASI AK
Sbjct: 190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAK 229
>gi|116806082|emb|CAL26424.1| CG13690 [Drosophila melanogaster]
gi|116806084|emb|CAL26425.1| CG13690 [Drosophila melanogaster]
gi|116806090|emb|CAL26428.1| CG13690 [Drosophila melanogaster]
Length = 347
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/160 (55%), Positives = 112/160 (70%), Gaps = 4/160 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L E KR+ +F D+ +
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKE 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G EKYQ KL +RFPS K V+KKADS YP+VS ASI AK
Sbjct: 190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAK 229
>gi|223967503|emb|CAR93482.1| CG13690-PA [Drosophila melanogaster]
Length = 347
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/160 (55%), Positives = 112/160 (70%), Gaps = 4/160 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L E KR+ +F D+ +
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINAKE 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G EKYQ KL +RFPS K V+KKADS YP+VS ASI AK
Sbjct: 190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAK 229
>gi|116806086|emb|CAL26426.1| CG13690 [Drosophila melanogaster]
gi|223967493|emb|CAR93477.1| CG13690-PA [Drosophila melanogaster]
gi|223967499|emb|CAR93480.1| CG13690-PA [Drosophila melanogaster]
gi|223967501|emb|CAR93481.1| CG13690-PA [Drosophila melanogaster]
Length = 347
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/160 (55%), Positives = 112/160 (70%), Gaps = 4/160 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L E KR+ +F D+ +
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKE 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G EKYQ KL +RFPS K V+KKADS YP+VS ASI AK
Sbjct: 190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAK 229
>gi|116806080|emb|CAL26423.1| CG13690 [Drosophila melanogaster]
gi|116806088|emb|CAL26427.1| CG13690 [Drosophila melanogaster]
gi|116806100|emb|CAL26433.1| CG13690 [Drosophila melanogaster]
Length = 347
Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/160 (55%), Positives = 112/160 (70%), Gaps = 4/160 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L E KR+ +F D+ +
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKE 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G EKYQ KL +RFPS K V+KKADS YP+VS ASI AK
Sbjct: 190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAK 229
>gi|116806096|emb|CAL26431.1| CG13690 [Drosophila melanogaster]
Length = 347
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/160 (55%), Positives = 112/160 (70%), Gaps = 4/160 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L E KR+ +F D+ +
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKE 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G EKYQ KL +RFPS K V+KKADS YP+VS ASI AK
Sbjct: 190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAK 229
>gi|449688727|ref|XP_002166509.2| PREDICTED: ribonuclease H2 subunit A-like, partial [Hydra
magnipapillata]
Length = 296
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 90/159 (56%), Positives = 114/159 (71%), Gaps = 1/159 (0%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
+ PC +GIDEAGRGPVLGPMVY YCP S + L+ L FADSKTL EEKR+ L ++
Sbjct: 26 TEPCCLGIDEAGRGPVLGPMVYSVCYCPISMIKKLSDLGFADSKTLTEEKRDNLLSVIEN 85
Query: 72 N-DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
N D +GWA+ II P E+S +ML + K+ LNEISH +AI L + +N G +TE+Y+DTVG
Sbjct: 86 NCDFIGWAIKIISPTEISNEMLRRYKVTLNEISHGAAIELTRKTINAGANITEMYVDTVG 145
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
DA KYQ KLS+ F I V+ KAD+L+P+VS ASI AK
Sbjct: 146 DALKYQNKLSEVFDGISVKVTPKADALFPIVSAASICAK 184
>gi|89268632|emb|CAJ82403.1| ribonuclease H2, large subunit [Xenopus (Silurana) tropicalis]
Length = 301
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 90/156 (57%), Positives = 109/156 (69%), Gaps = 1/156 (0%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK-VND 73
C +GIDEAGRGPVLGPMVYG YCP + ++ L L ADSKTL E +RE LFE L +D
Sbjct: 29 CCLGIDEAGRGPVLGPMVYGICYCPVARKKDLQDLKVADSKTLSEAERERLFEKLNSTSD 88
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
+GWA+ I+ P +S M + K NLN +SHD+AIGLI L+ G+ L EV+LDTVG AE
Sbjct: 89 YIGWALHILSPNIISTSMQQRAKYNLNALSHDTAIGLIQFALDAGVQLKEVFLDTVGPAE 148
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KYQ KL + FP + V KADSL+PVVS ASI AK
Sbjct: 149 KYQDKLKKIFPELDVTVRPKADSLFPVVSAASICAK 184
>gi|45361019|ref|NP_989146.1| ribonuclease H2, subunit A [Xenopus (Silurana) tropicalis]
gi|38494390|gb|AAH61614.1| ribonuclease H2, large subunit [Xenopus (Silurana) tropicalis]
Length = 301
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 90/156 (57%), Positives = 109/156 (69%), Gaps = 1/156 (0%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK-VND 73
C +GIDEAGRGPVLGPMVYG YCP + ++ L L ADSKTL E +RE LFE L +D
Sbjct: 29 CCLGIDEAGRGPVLGPMVYGICYCPVARKKDLQDLKVADSKTLSEAERERLFEKLNSTSD 88
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
+GWA+ I+ P +S M + K NLN +SHD+AIGLI L+ G+ L EV+LDTVG AE
Sbjct: 89 YIGWALHILSPNIISTSMQQRAKYNLNALSHDTAIGLIQFALDAGVQLKEVFLDTVGPAE 148
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KYQ KL + FP + V KADSL+PVVS ASI AK
Sbjct: 149 KYQDKLKKIFPELDVTVRPKADSLFPVVSAASICAK 184
>gi|116806104|emb|CAL26435.1| CG13690 [Drosophila simulans]
Length = 347
Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/160 (54%), Positives = 113/160 (70%), Gaps = 4/160 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP ++ L L ADSK L E KR+ +F D+ +
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESKKALEDLGCADSKQLTEGKRDIIFNDINTKE 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G EKYQ KL +RFP+ K V+KKADS YP+VS ASI AK
Sbjct: 190 GPPEKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAK 229
>gi|195575541|ref|XP_002077636.1| GD22959 [Drosophila simulans]
gi|194189645|gb|EDX03221.1| GD22959 [Drosophila simulans]
Length = 347
Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/160 (54%), Positives = 113/160 (70%), Gaps = 4/160 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP ++ L L ADSK L E KR+ +F D+ +
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESKKALEDLGCADSKQLTEGKRDIIFNDINTKE 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G EKYQ KL +RFP+ K V+KKADS YP+VS ASI AK
Sbjct: 190 GPPEKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAK 229
>gi|344282705|ref|XP_003413113.1| PREDICTED: ribonuclease H2 subunit A-like [Loxodonta africana]
Length = 298
Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 86/158 (54%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +R+ LF +K +
Sbjct: 27 EPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFAKMKED 86
Query: 73 -DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
D VGWA+D++ P +S ML + K NLN +SHD+A GL+ L+ + +T+V++DTVG
Sbjct: 87 RDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLVQYALDRSVKVTQVFVDTVGL 146
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
EKYQ +L QRFP I+ V KAD+LYPVVS ASI AK
Sbjct: 147 PEKYQERLQQRFPGIEVTVKAKADALYPVVSAASICAK 184
>gi|196017000|ref|XP_002118348.1| hypothetical protein TRIADDRAFT_51212 [Trichoplax adhaerens]
gi|190579064|gb|EDV19170.1| hypothetical protein TRIADDRAFT_51212 [Trichoplax adhaerens]
Length = 299
Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 88/166 (53%), Positives = 116/166 (69%), Gaps = 1/166 (0%)
Query: 5 AALPKWASN-PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKRE 63
+ P+ A N PC +GIDEAGRGPVLG MVYG Y P S + + L ADSK L E+ R+
Sbjct: 18 SGTPQAAQNEPCCLGIDEAGRGPVLGAMVYGACYYPLSQSEKVKELGVADSKVLTEDMRD 77
Query: 64 ELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
ELF+ + +DSVGW V+II P ++S KML + K +LN +SHD+AI LI + + G+ + E
Sbjct: 78 ELFQKINSDDSVGWLVEIISPSDISTKMLARTKYSLNAVSHDAAINLIRQSIQKGVQVKE 137
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+Y+DTVG AE YQ KLS+ FP I V+ KAD+L+P VS ASI+AK
Sbjct: 138 IYVDTVGVAENYQNKLSELFPDITIKVTPKADALFPCVSAASIIAK 183
>gi|195350095|ref|XP_002041577.1| GM16670 [Drosophila sechellia]
gi|194123350|gb|EDW45393.1| GM16670 [Drosophila sechellia]
Length = 347
Score = 179 bits (454), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 87/160 (54%), Positives = 112/160 (70%), Gaps = 4/160 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L E KR+ +F D+ +
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLERNKALEDLGCADSKQLTEGKRDIIFNDINTKE 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G EKYQ KL +RFP+ K V+KKADS YP+VS ASI AK
Sbjct: 190 GPPEKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAK 229
>gi|34329831|gb|AAQ64005.1| ribonuclease H2 [Homo sapiens]
Length = 299
Score = 179 bits (454), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 86/156 (55%), Positives = 107/156 (68%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVY YCP L L ADSKTL E +RE LF ++ D
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTD 87
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+D++ P +S ML K NLN +SHD+A GLI L+ G+ +T+V++DTVG E
Sbjct: 88 FVGWALDVLSPNLISTSMLGWVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPE 147
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
YQA+L Q FP I+ V KAD+LYPVVS ASI AK
Sbjct: 148 TYQARLQQSFPGIEVTVKAKADALYPVVSAASICAK 183
>gi|340380420|ref|XP_003388720.1| PREDICTED: ribonuclease H2 subunit A-like [Amphimedon
queenslandica]
Length = 320
Score = 179 bits (454), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 89/156 (57%), Positives = 112/156 (71%), Gaps = 1/156 (0%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVND 73
C+MGIDEAGRGPVLGPMVYG YCP + + L L FADSK L +RE+L+ + + N+
Sbjct: 43 CLMGIDEAGRGPVLGPMVYGISYCPITKTKDLEKLKFADSKVLSVSQREDLYHTITECNE 102
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
+GW I+ P LS ML ++K NLN ISHD+AI LI +VL+ G+ LTEVY+DTVG E
Sbjct: 103 WLGWKACILSPNYLSNCMLRRSKYNLNSISHDTAIDLIRKVLSDGVKLTEVYVDTVGKPE 162
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
YQ+KL FP +K V+KKADSL+P+VS ASI AK
Sbjct: 163 SYQSKLESIFPQLKVTVTKKADSLFPIVSAASICAK 198
>gi|410925260|ref|XP_003976099.1| PREDICTED: ribonuclease H2 subunit A-like [Takifugu rubripes]
Length = 310
Score = 178 bits (452), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 86/156 (55%), Positives = 110/156 (70%), Gaps = 1/156 (0%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVND 73
C +GIDEAGRGPVLGPMVYG +CP S ++ L L ADSKTL E +RE LFE + +
Sbjct: 29 CCLGIDEAGRGPVLGPMVYGICFCPISRKEELKDLKVADSKTLTEAEREALFEKMDEAKS 88
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+ ++ P +S ML + K NLN +SHD+AIGL+ L+ G+ L EV++DTVG A+
Sbjct: 89 YVGWALQVLSPNTISNSMLQRTKYNLNALSHDTAIGLVQHALDCGVQLKEVFVDTVGPAD 148
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KY+ KLS+ FP I V KADSL+P+VS ASI AK
Sbjct: 149 KYEDKLSKIFPGIAVTVRPKADSLFPIVSAASICAK 184
>gi|428176594|gb|EKX45478.1| ribonuclease H2 large subunit [Guillardia theta CCMP2712]
Length = 241
Score = 178 bits (452), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 89/154 (57%), Positives = 113/154 (73%), Gaps = 2/154 (1%)
Query: 17 MGIDEAGRGPVLGPMVYG-CLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
MGIDEAGRGPV+GPMVYG C+ C L + FADSKTL EEKRE LFE +K ++ +
Sbjct: 1 MGIDEAGRGPVIGPMVYGACIIC-SKRNNELKEMGFADSKTLTEEKREVLFERIKESNVL 59
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
GW V+++ ++LS ML + NLN ISHD+AIG+I +VL L +V++DTVGD E+Y
Sbjct: 60 GWLVEVLSAKQLSGSMLQRAPYNLNAISHDTAIGMIRKVLAANFNLKKVFVDTVGDPERY 119
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
++KLS FPSI+F V KKADSL+PVVS ASI AK
Sbjct: 120 ESKLSSLFPSIEFAVRKKADSLFPVVSAASICAK 153
>gi|351711560|gb|EHB14479.1| Ribonuclease H2 subunit A [Heterocephalus glaber]
Length = 298
Score = 178 bits (452), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 86/158 (54%), Positives = 109/158 (68%), Gaps = 1/158 (0%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +R+ LF ++ +
Sbjct: 27 EPCVLGVDEAGRGPVLGPMVYAICYCPESRLADLEALKVADSKTLSESERDRLFAKMEED 86
Query: 73 -DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
D VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG
Sbjct: 87 QDLVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVKVTQVFVDTVGL 146
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQ +L QRFP I V KAD+LYPVVS ASI AK
Sbjct: 147 PEMYQKRLQQRFPEITVTVKAKADALYPVVSAASICAK 184
>gi|301171214|ref|NP_001180335.1| ribonuclease H2, subunit A [Xenopus laevis]
gi|71051192|gb|AAH99334.1| Unknown (protein for MGC:116529) [Xenopus laevis]
Length = 302
Score = 178 bits (452), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 89/156 (57%), Positives = 108/156 (69%), Gaps = 1/156 (0%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK-VND 73
C +GIDEAGRGPVLGPMVYG YCP + ++ L ADSKTL E RE LFE L +D
Sbjct: 29 CCLGIDEAGRGPVLGPMVYGICYCPVARKKDLQDSKVADSKTLSEADRERLFEKLNGSSD 88
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
+GWA+ I+ P +S M + K NLN +SHD+AIGLI L+ G+ LTEV++DTVG AE
Sbjct: 89 YIGWALHILSPNVISTSMQQRAKYNLNALSHDTAIGLIQFALDAGVQLTEVFVDTVGPAE 148
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KYQ KL + FP + V KADSL+PVVS ASI AK
Sbjct: 149 KYQEKLKKIFPELDVTVRPKADSLFPVVSAASICAK 184
>gi|403302260|ref|XP_003941780.1| PREDICTED: ribonuclease H2 subunit A [Saimiri boliviensis
boliviensis]
Length = 300
Score = 178 bits (452), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 109/157 (69%), Gaps = 1/157 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERERLFAKMQEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQ +L Q FP I+ V KAD+LYPVVS ASI AK
Sbjct: 148 ETYQKRLQQSFPGIEVTVKAKADALYPVVSAASICAK 184
>gi|194213064|ref|XP_001495257.2| PREDICTED: ribonuclease H2 subunit A-like [Equus caballus]
Length = 299
Score = 178 bits (451), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 86/158 (54%), Positives = 108/158 (68%), Gaps = 1/158 (0%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
PC +G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +R+ LF +K +
Sbjct: 27 QPCALGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFARMKED 86
Query: 73 -DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
D VGWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG
Sbjct: 87 GDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLVQYALDQGVKVAQVFVDTVGM 146
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQ +L QRFP I+ V KADSLYPVVS ASI AK
Sbjct: 147 PETYQQRLQQRFPGIEVTVKAKADSLYPVVSAASICAK 184
>gi|348565231|ref|XP_003468407.1| PREDICTED: ribonuclease H2 subunit A-like [Cavia porcellus]
Length = 298
Score = 178 bits (451), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 85/157 (54%), Positives = 109/157 (69%), Gaps = 1/157 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +R+ LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPQSRLADLEALKVADSKTLSENERDRLFSKMQEDR 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG A
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTASGLIQHALDQGVNVTQVFVDTVGLA 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
YQ +L QRFP + V KAD+LYPVVS ASI AK
Sbjct: 148 ASYQERLQQRFPDVTVTVKAKADALYPVVSAASICAK 184
>gi|49115760|gb|AAH73515.1| LOC443655 protein, partial [Xenopus laevis]
Length = 305
Score = 178 bits (451), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 89/156 (57%), Positives = 108/156 (69%), Gaps = 1/156 (0%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK-VND 73
C +GIDEAGRGPVLGPMVYG YCP + ++ L ADSKTL E RE LFE L +D
Sbjct: 32 CCLGIDEAGRGPVLGPMVYGICYCPVARKKDLQDSKVADSKTLSEADRERLFEKLNGSSD 91
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
+GWA+ I+ P +S M + K NLN +SHD+AIGLI L+ G+ LTEV++DTVG AE
Sbjct: 92 YIGWALHILSPNIISTSMQQRAKYNLNALSHDTAIGLIQFALDAGVQLTEVFVDTVGPAE 151
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KYQ KL + FP + V KADSL+PVVS ASI AK
Sbjct: 152 KYQEKLKKIFPELDVTVRPKADSLFPVVSAASICAK 187
>gi|193709059|ref|XP_001946925.1| PREDICTED: ribonuclease H2 subunit A-like [Acyrthosiphon pisum]
Length = 312
Score = 178 bits (451), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 92/168 (54%), Positives = 118/168 (70%), Gaps = 2/168 (1%)
Query: 4 EAALPK-WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKR 62
E+ LP+ + CI+GIDEAGRGPVLGPMVYG YC Q L TL ADSK L E+ R
Sbjct: 30 ESDLPESTTTEKCILGIDEAGRGPVLGPMVYGTSYCSVDNQAILKTLGCADSKVLSEQAR 89
Query: 63 EELFEDL-KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILL 121
+++F+ + K ++ +GWAV II P +S + K +LNEISH++AIGLI RVL+ G+ +
Sbjct: 90 DDIFDGITKQSEILGWAVHIISPTTISNCSFRRQKCSLNEISHNAAIGLIQRVLDRGVNI 149
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
EV++DTVG EKYQ KL FP +K VSKKADSL+P+VS ASI AK
Sbjct: 150 CEVFVDTVGPPEKYQEKLLSIFPQLKITVSKKADSLFPIVSAASICAK 197
>gi|332030069|gb|EGI69894.1| Ribonuclease H2 subunit A [Acromyrmex echinatior]
Length = 332
Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/159 (54%), Positives = 112/159 (70%), Gaps = 1/159 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVN 72
PC +G+DEAGRGPVLGPMVYG Y P S Q L L ADSK+L E+KR+E+F+D+ K
Sbjct: 61 PCQLGVDEAGRGPVLGPMVYGISYAPLSQNQLLVDLGCADSKSLTEKKRDEIFDDICKHK 120
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
DS+GWA+++I P ++ M + KI+LNEIS SA LI + G+ + E+Y+DTVG
Sbjct: 121 DSIGWAIEVISPNVIANNMYRRTKISLNEISMISATNLIREAIEAGVNVAEIYVDTVGKP 180
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRS 171
E YQ +L FPSIK +V+KKAD+ YP+VS ASI AK S
Sbjct: 181 ESYQTRLKSIFPSIKIIVAKKADATYPIVSAASICAKVS 219
>gi|116284049|gb|AAH29252.1| Rnaseh2a protein [Mus musculus]
Length = 254
Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 109/157 (69%), Gaps = 1/157 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ + +T+V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQA+L Q FP I+ V KADSL+PVVS ASI AK
Sbjct: 148 ETYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAK 184
>gi|58037175|ref|NP_081463.1| ribonuclease H2 subunit A [Mus musculus]
gi|85541053|sp|Q9CWY8.2|RNH2A_MOUSE RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|312208159|pdb|3P5J|A Chain A, The Structure Of The Human Rnase H2 Complex Defines Key
Interaction Interfaces Relevant To Enzyme Function And
Human Disease
gi|23273263|gb|AAH38158.1| Ribonuclease H2, large subunit [Mus musculus]
gi|74138850|dbj|BAE27230.1| unnamed protein product [Mus musculus]
Length = 301
Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 109/157 (69%), Gaps = 1/157 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ + +T+V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQA+L Q FP I+ V KADSL+PVVS ASI AK
Sbjct: 148 ETYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAK 184
>gi|12845627|dbj|BAB26828.1| unnamed protein product [Mus musculus]
Length = 301
Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 109/157 (69%), Gaps = 1/157 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ + +T+V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDRNVNVTQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQA+L Q FP I+ V KADSL+PVVS ASI AK
Sbjct: 148 ETYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAK 184
>gi|328774049|gb|EGF84086.1| hypothetical protein BATDEDRAFT_8789 [Batrachochytrium
dendrobatidis JAM81]
Length = 290
Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/158 (55%), Positives = 114/158 (72%), Gaps = 2/158 (1%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVN 72
PCI+G+DEAGRGPVLGPMVY Y S+Q L + FADSK L E +R++LF + K +
Sbjct: 61 PCILGVDEAGRGPVLGPMVYAVCYTLISHQDKLKDIGFADSKVLNETQRDKLFATIEKQS 120
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ +GWA + P+++S ML + K NLN ++HD+ I LI VL+ G+ + EVY+DTVG
Sbjct: 121 EWIGWAATVCSPQDISESMLRRAKYNLNALAHDTTINLIQSVLDQGVNIQEVYVDTVGSP 180
Query: 133 EKYQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAK 169
E YQAKL++RFP I K VVSKKADSL+P+VS ASI AK
Sbjct: 181 ESYQAKLAKRFPKIGKIVVSKKADSLFPIVSAASICAK 218
>gi|148673841|gb|EDL05788.1| mCG129830, isoform CRA_a [Mus musculus]
Length = 226
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 109/157 (69%), Gaps = 1/157 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ + +T+V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQA+L Q FP I+ V KADSL+PVVS ASI AK
Sbjct: 148 ETYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAK 184
>gi|380020624|ref|XP_003694182.1| PREDICTED: ribonuclease H2 subunit A-like [Apis florea]
Length = 350
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/159 (56%), Positives = 112/159 (70%), Gaps = 1/159 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVN 72
PC +GIDEAGRGPVLGPMVYG Y P S +Q L L ADSK+L EEKR+ +F+ + +
Sbjct: 78 PCQLGIDEAGRGPVLGPMVYGISYAPLSEKQLLVDLGCADSKSLTEEKRDTIFDKICEQY 137
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
++GWAVD+I P +S M + K +LNE+S +SAI L V+ G +TE+Y+DTVG
Sbjct: 138 KTIGWAVDVISPNVISNSMYRRVKTSLNEVSMNSAIELAKLVIEAGARITEIYVDTVGKP 197
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRS 171
EKYQAKL Q FP IK V+KKADS YP+VS ASI AK S
Sbjct: 198 EKYQAKLEQIFPDIKITVAKKADSTYPIVSAASICAKVS 236
>gi|346986447|ref|NP_001231373.1| ribonuclease H2 subunit A [Sus scrofa]
Length = 301
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/157 (53%), Positives = 109/157 (69%), Gaps = 1/157 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +R+ LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFAKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGLP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQ +L QRFP I+ V KAD+LYPVVS ASI AK
Sbjct: 148 ETYQERLQQRFPDIEVTVKAKADALYPVVSAASICAK 184
>gi|224110154|ref|XP_002315431.1| predicted protein [Populus trichocarpa]
gi|222864471|gb|EEF01602.1| predicted protein [Populus trichocarpa]
Length = 305
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/155 (61%), Positives = 116/155 (74%), Gaps = 13/155 (8%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC--PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
MGIDEAGR P L +C C+ + L+ + L+ + R + FE+LK N+S
Sbjct: 1 MGIDEAGRVPDL--------WCTDACTVLAHMRRLSLPSA--LQRKGRSD-FENLKANES 49
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+GWAVD+ DPRELSAKML KNKINLNEISHDSA GL+ RVLN+G+LLTEV +DTVGD EK
Sbjct: 50 IGWAVDVNDPRELSAKMLKKNKINLNEISHDSASGLVNRVLNMGVLLTEVCVDTVGDPEK 109
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
Y+ KLS+ FP +KFVV+KKA SLYPVVSGASIVAK
Sbjct: 110 YRIKLSESFPFVKFVVAKKAGSLYPVVSGASIVAK 144
>gi|426228912|ref|XP_004008539.1| PREDICTED: ribonuclease H2 subunit A [Ovis aries]
Length = 299
Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/158 (53%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
PC++G+DEAGRGPVLGPMVY YCP S + L L ADSKTL E +R+ LF ++ +
Sbjct: 27 EPCVLGVDEAGRGPVLGPMVYAICYCPLSRLEDLEALKVADSKTLSESERDRLFAKMEED 86
Query: 73 -DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
D VGWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG
Sbjct: 87 GDFVGWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLVQFALDQGVNVAQVFVDTVGL 146
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQ +L QRFP I+ V KAD+LYPVVS ASI AK
Sbjct: 147 PETYQERLQQRFPGIEVTVKAKADALYPVVSAASICAK 184
>gi|359322070|ref|XP_003639769.1| PREDICTED: ribonuclease H2 subunit A-like [Canis lupus familiaris]
Length = 299
Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 85/158 (53%), Positives = 108/158 (68%), Gaps = 1/158 (0%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KV 71
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +R+ LF + K
Sbjct: 27 EPCVLGVDEAGRGPVLGPMVYAICYCPLSRLGDLEALKVADSKTLSESERDRLFVKMEKD 86
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
D VGWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG
Sbjct: 87 RDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGL 146
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQ +L QRFP I+ V KAD+LYPVVS ASI AK
Sbjct: 147 PETYQERLQQRFPGIEVTVKAKADALYPVVSAASICAK 184
>gi|84370099|ref|NP_001033623.1| ribonuclease H2 subunit A [Bos taurus]
gi|110816412|sp|Q2TBT5.1|RNH2A_BOVIN RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|83638655|gb|AAI09683.1| Ribonuclease H2, subunit A [Bos taurus]
gi|296485915|tpg|DAA28030.1| TPA: ribonuclease H2 subunit A [Bos taurus]
gi|440902072|gb|ELR52915.1| Ribonuclease H2 subunit A [Bos grunniens mutus]
Length = 299
Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/158 (53%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
PC++G+DEAGRGPVLGPMVY YCP S + L L ADSKTL E +R+ LF ++ +
Sbjct: 27 EPCVLGVDEAGRGPVLGPMVYAICYCPLSRLEDLEALKVADSKTLSESERDRLFAKMEED 86
Query: 73 -DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
D VGWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG
Sbjct: 87 GDFVGWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLVQFALDQGVNVAQVFVDTVGL 146
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQ +L QRFP I+ V KAD+LYPVVS ASI AK
Sbjct: 147 PETYQERLQQRFPGIEVTVKAKADALYPVVSAASICAK 184
>gi|432095927|gb|ELK26843.1| Ribonuclease H2 subunit A [Myotis davidii]
Length = 299
Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 84/157 (53%), Positives = 109/157 (69%), Gaps = 1/157 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +R+ LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPMSRLADLEALKVADSKTLSESERDRLFAKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLVQYALDQGVNVAQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQ +L QRFP I+ V KAD+LYPVVS ASI AK
Sbjct: 148 ETYQERLQQRFPGIEVTVKAKADALYPVVSAASICAK 184
>gi|328783769|ref|XP_396289.3| PREDICTED: ribonuclease H2 subunit A-like isoform 1 [Apis
mellifera]
Length = 350
Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 89/159 (55%), Positives = 112/159 (70%), Gaps = 1/159 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVN 72
PC +GIDEAGRGPVLGPMVYG Y P S +Q L L ADSK+L EEKR+ +F+ + +
Sbjct: 78 PCQLGIDEAGRGPVLGPMVYGISYAPLSEKQLLVDLGCADSKSLTEEKRDTIFDKICEQY 137
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
++GWAVD+I P +S M + K +LNE+S +SAI L V+ G +TE+Y+DT+G
Sbjct: 138 KTIGWAVDVISPNVISNSMYRRVKTSLNEVSMNSAIELAKLVIEAGARITEIYVDTIGKP 197
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRS 171
EKYQAKL Q FP IK V+KKADS YP+VS ASI AK S
Sbjct: 198 EKYQAKLEQIFPDIKITVAKKADSTYPIVSAASICAKVS 236
>gi|301771221|ref|XP_002921051.1| PREDICTED: ribonuclease H2 subunit A-like [Ailuropoda melanoleuca]
gi|281353030|gb|EFB28614.1| hypothetical protein PANDA_009861 [Ailuropoda melanoleuca]
Length = 299
Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 83/158 (52%), Positives = 109/158 (68%), Gaps = 1/158 (0%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +R+ LF ++ +
Sbjct: 27 EPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFVKMEED 86
Query: 73 -DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
D VGWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG
Sbjct: 87 GDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGP 146
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQ +L +RFP I+ V KAD+LYPVVS ASI AK
Sbjct: 147 PETYQERLQERFPGIEVTVKAKADALYPVVSAASICAK 184
>gi|312208153|pdb|3P56|A Chain A, The Structure Of The Human Rnase H2 Complex Defines Key
Interaction Interfaces Relevant To Enzyme Function And
Human Disease
gi|312208156|pdb|3P56|D Chain D, The Structure Of The Human Rnase H2 Complex Defines Key
Interaction Interfaces Relevant To Enzyme Function And
Human Disease
Length = 299
Score = 175 bits (444), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 84/156 (53%), Positives = 106/156 (67%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+ EAGRGPVLGPMVY YCP L L ADSKTL E +RE LF ++ D
Sbjct: 28 PCVLGVAEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTD 87
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E
Sbjct: 88 FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPE 147
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
YQA+L Q FP I+ V KA +LYPVVS ASI AK
Sbjct: 148 TYQARLQQSFPGIEVTVKAKAAALYPVVSAASICAK 183
>gi|126322781|ref|XP_001362490.1| PREDICTED: ribonuclease H2 subunit A-like [Monodelphis domestica]
Length = 304
Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 86/156 (55%), Positives = 109/156 (69%), Gaps = 1/156 (0%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVND 73
C +GIDEAGRGPVLGPMVYG +CP S L L ADSKTL E +RE LF L + D
Sbjct: 29 CCLGIDEAGRGPVLGPMVYGICFCPLSRLGDLEALKVADSKTLSEAERERLFGKLDQARD 88
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+DI+ P +S M + K NLN +SHD+A+ L+ L+ G+ +T+V++DTVG A+
Sbjct: 89 FVGWALDILSPNLISNSMQRRAKYNLNSLSHDTAMALVQLALDQGVKVTQVFVDTVGPAD 148
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KYQ KL +RFP ++ V KADSL+PVVS ASI AK
Sbjct: 149 KYQQKLQERFPELEVTVRPKADSLFPVVSAASICAK 184
>gi|410950548|ref|XP_003981966.1| PREDICTED: ribonuclease H2 subunit A [Felis catus]
Length = 299
Score = 175 bits (443), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 84/158 (53%), Positives = 109/158 (68%), Gaps = 1/158 (0%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
PCI+G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +R+ LF ++ +
Sbjct: 27 EPCILGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFVKMQED 86
Query: 73 -DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
D VGWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG
Sbjct: 87 GDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQFALDQGVKVAQVFVDTVGL 146
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+ YQ +L QRFP I+ V KAD+LYPVVS ASI AK
Sbjct: 147 PDTYQERLQQRFPGIEVTVKAKADALYPVVSAASICAK 184
>gi|307188511|gb|EFN73248.1| Ribonuclease H2 subunit A [Camponotus floridanus]
Length = 334
Score = 175 bits (443), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 85/159 (53%), Positives = 113/159 (71%), Gaps = 1/159 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVN 72
PC +G+DEAGRGPVLGPMVYG Y P S +Q L L ADSK+L E+KR+E+F+D+ K
Sbjct: 61 PCQLGVDEAGRGPVLGPMVYGISYAPLSRKQLLVDLGCADSKSLTEKKRDEIFDDICKHK 120
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
DS+GWA++ I P ++ M + K++LNE+S SAI LI + G+ + E+Y+DTVG
Sbjct: 121 DSIGWAIEAISPNVIANSMYRRTKVSLNEVSMVSAIKLIQGAIEAGVNVAEIYVDTVGKP 180
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRS 171
E YQA+L FP +K VV+KKAD+ YP+VS ASI AK S
Sbjct: 181 ESYQARLKGVFPGVKIVVAKKADATYPIVSAASICAKVS 219
>gi|355716672|gb|AES05686.1| ribonuclease H2, subunit A [Mustela putorius furo]
Length = 299
Score = 174 bits (442), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 84/158 (53%), Positives = 108/158 (68%), Gaps = 1/158 (0%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
PC +G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +R+ LF ++ +
Sbjct: 27 EPCALGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFVKMEED 86
Query: 73 -DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
D VGWA+D++ P +S ML + K NLN +SHD+AIGL+ L+ G+ + +V++DTVG
Sbjct: 87 GDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAIGLVQYALDQGVKVAQVFVDTVGP 146
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQ +L Q FP I+ V KAD+LYPVVS ASI AK
Sbjct: 147 PETYQEQLQQHFPGIEVTVKAKADALYPVVSAASICAK 184
>gi|343427877|emb|CBQ71403.1| related to 35 kDa ribonuclease H [Sporisorium reilianum SRZ2]
Length = 464
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/159 (49%), Positives = 112/159 (70%), Gaps = 3/159 (1%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGP+VYG YCP SYQ +LA + FADSK L E+R L L ++
Sbjct: 72 PCVLGVDEAGRGPVLGPLVYGIAYCPVSYQDSLAQIGFADSKALTPERRSTLLTALIEDE 131
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
++GWAV ++ P+++SA ML + +NLN S + + LI VL+ G+ +TE+Y+DTVGDA+
Sbjct: 132 TLGWAVRVMAPQDISAGMLRRRPVNLNAQSSSATVSLIQGVLDSGVDVTEIYVDTVGDAK 191
Query: 134 KYQAKLSQRF---PSIKFVVSKKADSLYPVVSGASIVAK 169
Y L+ F P +K+ V+ KAD++YP+V ASI AK
Sbjct: 192 SYARLLASHFPRHPHVKWTVTSKADAIYPIVGAASIAAK 230
>gi|350411556|ref|XP_003489389.1| PREDICTED: ribonuclease H2 subunit A-like [Bombus impatiens]
Length = 334
Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 113/157 (71%), Gaps = 1/157 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVN 72
PC +GIDEAGRGPVLGPMVYG Y P S +Q L L ADSK+L EE+R+ +F+++ K +
Sbjct: 62 PCQLGIDEAGRGPVLGPMVYGIAYAPLSEKQLLVDLGCADSKSLTEEQRDAIFDNICKQH 121
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
++GWAVD+I P ++ M + K +LNE+S +SAI L V+ G +TE+Y+DTVG
Sbjct: 122 KTIGWAVDVISPNIIANNMYRRVKTSLNEVSMNSAIELAKLVIEAGANITEIYVDTVGVP 181
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+KYQA+L Q FP IK V+KKADS YP+VS ASI AK
Sbjct: 182 QKYQARLEQIFPDIKITVAKKADSTYPIVSAASICAK 218
>gi|325974872|gb|ADZ47886.1| ribonuclease H2 subunit A [Capra hircus]
Length = 286
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/157 (52%), Positives = 109/157 (69%), Gaps = 1/157 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S + L L ADSKTL E +R+ LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLEDLEALKVADSKTLSESERDRLFAKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DT G
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLVQFALDQGVNVAQVFVDTGGLP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQ +L QRFP I+ V KAD+LYPVVS ASI AK
Sbjct: 148 ETYQERLQQRFPGIEVTVKAKADALYPVVSAASICAK 184
>gi|330791509|ref|XP_003283835.1| hypothetical protein DICPUDRAFT_26608 [Dictyostelium purpureum]
gi|325086221|gb|EGC39614.1| hypothetical protein DICPUDRAFT_26608 [Dictyostelium purpureum]
Length = 289
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/160 (56%), Positives = 112/160 (70%), Gaps = 2/160 (1%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-K 70
+ P IMGIDEAGRGPV+GP+VYGC + P S T++ + F DSK L E++R LF+ +
Sbjct: 14 TKPFIMGIDEAGRGPVMGPLVYGCCFAPISETATISKMKFNDSKKLTEQQRNHLFQKMCD 73
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
N +G+ VD+I P LS KML K I+LN ISH+SA+GLI VL+ GI + E+YLDTVG
Sbjct: 74 SNKILGFEVDVISPEILSEKMLLKKPISLNVISHESAMGLIRSVLSKGINVQELYLDTVG 133
Query: 131 DAEKYQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAK 169
YQA L FP I K VVSKKADSLYP+VS ASI AK
Sbjct: 134 TPATYQAMLKNHFPEISKIVVSKKADSLYPIVSAASICAK 173
>gi|302800969|ref|XP_002982241.1| hypothetical protein SELMODRAFT_233940 [Selaginella moellendorffii]
gi|300149833|gb|EFJ16486.1| hypothetical protein SELMODRAFT_233940 [Selaginella moellendorffii]
Length = 261
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/163 (55%), Positives = 112/163 (68%), Gaps = 22/163 (13%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W S PC MGIDEAGRGPVLGPMVYGC YC +Y++ LA+L FA + F+D+
Sbjct: 5 WCSTPCAMGIDEAGRGPVLGPMVYGCAYCAVAYKEELASLKFAGMR----------FQDI 54
Query: 70 ---KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL 126
K + REL ++ K +LN+IS+DSAIGLI VL+ G+LL+EVY+
Sbjct: 55 DRGKTRKAF---------RELEGGPIDGVKRSLNDISYDSAIGLIKLVLSRGVLLSEVYV 105
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
DTVGDAEKYQA+LS+ FP IKF V+KKADSL+P+VS ASI AK
Sbjct: 106 DTVGDAEKYQARLSELFPHIKFTVAKKADSLFPIVSAASIAAK 148
>gi|357625234|gb|EHJ75743.1| hypothetical protein KGM_02725 [Danaus plexippus]
Length = 276
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/158 (53%), Positives = 113/158 (71%), Gaps = 4/158 (2%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF----EDLKV 71
++G+DEAGRGPVLGPMVYG YCP + + L +L ADSK L EEKR+E+F + +
Sbjct: 1 MLGVDEAGRGPVLGPMVYGIAYCPINQNKVLESLGCADSKALTEEKRDEIFLKMLTEKEA 60
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
D+VGW ++I P +S M + K +LNE+S +SAI LI + + +G +TEVY+DTVG
Sbjct: 61 VDNVGWMAEVISPNYISNSMYKRAKHSLNEVSMNSAISLIKKTIELGGNITEVYVDTVGP 120
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
EKYQA+L + FP IK V+KKADS+YP+VS ASIVAK
Sbjct: 121 PEKYQARLKEIFPDIKITVAKKADSIYPIVSAASIVAK 158
>gi|66801163|ref|XP_629507.1| ribonuclease H2 subunit A [Dictyostelium discoideum AX4]
gi|74896782|sp|Q54D13.1|RNH2A_DICDI RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A
gi|60462898|gb|EAL61095.1| ribonuclease H2 subunit A [Dictyostelium discoideum AX4]
Length = 289
Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/177 (52%), Positives = 119/177 (67%), Gaps = 10/177 (5%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-K 70
S P +MGIDEAGRGPV+GPMVYGC Y P S TL ++ F DSK L E++R++LF+ + +
Sbjct: 18 SEPFVMGIDEAGRGPVMGPMVYGCCYAPISKSTTLKSMKFNDSKKLTEQQRDQLFDKMGE 77
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
N + + D+I LS KML K I+LN ISH+SAIGLI VL G+ + E+YLDTVG
Sbjct: 78 SNKILAYETDVITAEILSEKMLYKKPISLNVISHESAIGLIRSVLKKGVNVQELYLDTVG 137
Query: 131 DAEKYQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAK--------RSNFERMDI 178
+KYQ L + FP I K +VSKKADSLYP+VS ASI AK NF+ ++I
Sbjct: 138 PPDKYQLMLKKLFPEIGKIIVSKKADSLYPIVSAASIAAKVVRDFEITNKNFDYLNI 194
>gi|221481429|gb|EEE19819.1| ribonuclease HI large subunit, putative [Toxoplasma gondii GT1]
gi|221501972|gb|EEE27722.1| ribonuclease HI large subunit, putative [Toxoplasma gondii VEG]
Length = 366
Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 90/163 (55%), Positives = 112/163 (68%), Gaps = 2/163 (1%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCS-YQQTLATLNFADSKTLKEEKREELFE 67
K P +GIDEAGRG VLG MVY C +C ++ L LN DSK LKE +REE FE
Sbjct: 16 KCGGKPVRLGIDEAGRGCVLGAMVYACFFCAAEDEKKELKALNVDDSKKLKEWEREEAFE 75
Query: 68 DLKV-NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL 126
++ D GW++ I E+SAKML K K +LNEISHD+AI LI R + G+ +TEV++
Sbjct: 76 AIQAKRDLFGWSIHAIRSEEISAKMLRKKKYSLNEISHDTAISLILRTVKSGVNVTEVFV 135
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
DTVG+A YQAKL FPSIK V++KADSL+PVVS ASI+AK
Sbjct: 136 DTVGNANAYQAKLKAHFPSIKIKVAEKADSLFPVVSAASILAK 178
>gi|237844165|ref|XP_002371380.1| ribonuclease HI large subunit, putative [Toxoplasma gondii ME49]
gi|211969044|gb|EEB04240.1| ribonuclease HI large subunit, putative [Toxoplasma gondii ME49]
Length = 366
Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 90/163 (55%), Positives = 112/163 (68%), Gaps = 2/163 (1%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCS-YQQTLATLNFADSKTLKEEKREELFE 67
K P +GIDEAGRG VLG MVY C +C ++ L LN DSK LKE +REE FE
Sbjct: 16 KCGGKPVRLGIDEAGRGCVLGAMVYACFFCAAEDEKKELKALNVDDSKKLKEWEREEAFE 75
Query: 68 DLKV-NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL 126
++ D GW++ I E+SAKML K K +LNEISHD+AI LI R + G+ +TEV++
Sbjct: 76 AIQAKRDLFGWSIHAIRSEEISAKMLRKKKYSLNEISHDTAISLILRTVKSGVNVTEVFV 135
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
DTVG+A YQAKL FPSIK V++KADSL+PVVS ASI+AK
Sbjct: 136 DTVGNANAYQAKLKAHFPSIKIKVAEKADSLFPVVSAASILAK 178
>gi|156542709|ref|XP_001603515.1| PREDICTED: ribonuclease H2 subunit A-like [Nasonia vitripennis]
Length = 350
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 86/159 (54%), Positives = 113/159 (71%), Gaps = 1/159 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC +G+DEAGRGPVLGPMVYG Y P S ++ L + ADSK+L EEKR+ +F+ + N
Sbjct: 78 PCQLGVDEAGRGPVLGPMVYGIAYAPLSQKKLLVDMGCADSKSLTEEKRDTIFDKICDNG 137
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D +G+AVD I P ++ M + K +LNE+S +SAI LI + ++ G+ + E+Y+DTVG
Sbjct: 138 DKMGYAVDAISPNYIANCMYRRTKTSLNEVSMNSAISLIKQAIDSGVFVAEIYVDTVGKP 197
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRS 171
EKYQAKL FP IK VV+KKADS YP+VS ASI AK S
Sbjct: 198 EKYQAKLEGIFPGIKIVVAKKADSTYPIVSAASICAKVS 236
>gi|440800045|gb|ELR21088.1| ribonuclease HII, putative [Acanthamoeba castellanii str. Neff]
Length = 292
Score = 172 bits (437), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 86/154 (55%), Positives = 108/154 (70%), Gaps = 1/154 (0%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLN-FADSKTLKEEKREELFEDLKVNDSV 75
+GIDEAGRGPVLGPMVY C YCP S ++ + T + F DSK L E +RE +FE + V
Sbjct: 14 LGIDEAGRGPVLGPMVYACAYCPLSEKENIRTRDGFQDSKQLSEHQRESMFERIVGAPDV 73
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
G+ I+ +LS KML +K NLN+ISHD+A LI R L G+ L EVY+DTVGD +Y
Sbjct: 74 GFEACILSAEDLSNKMLRASKYNLNQISHDTAAELIARALTKGVPLKEVYVDTVGDPGRY 133
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
Q LS++FP + VSKKADSL+P+VS ASIVAK
Sbjct: 134 QENLSRKFPRLAITVSKKADSLFPIVSAASIVAK 167
>gi|312379086|gb|EFR25480.1| hypothetical protein AND_09149 [Anopheles darlingi]
Length = 346
Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 88/181 (48%), Positives = 114/181 (62%), Gaps = 25/181 (13%)
Query: 14 PCIMGIDEAGRGPVLG---------------------PMVYGCLYCPCSYQQTLATLNFA 52
PC++G+DEAGRGPVLG PMVYG +CP S + L +L FA
Sbjct: 47 PCMLGVDEAGRGPVLGKRDPEPYSERKMKLFCNPMLGPMVYGIAFCPLSKKDILKSLGFA 106
Query: 53 DSKTLKEEKREELFEDLKVND----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAI 108
DSK L EEKR+++F+++ D ++GWAV+ I P +S ML + K +LNE+S +SAI
Sbjct: 107 DSKQLTEEKRDQIFDEMNQKDYATEALGWAVEAISPNTISMSMLRRTKCSLNEVSMNSAI 166
Query: 109 GLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVA 168
GLI + G+ + EVY+DTVG EKYQAKL FP K V+KKADS YP+VS ASI A
Sbjct: 167 GLIHAAIEAGVNIAEVYVDTVGPPEKYQAKLKDIFPKFKITVAKKADSTYPIVSAASIAA 226
Query: 169 K 169
K
Sbjct: 227 K 227
>gi|340729627|ref|XP_003403099.1| PREDICTED: ribonuclease H2 subunit A-like [Bombus terrestris]
Length = 334
Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 111/157 (70%), Gaps = 1/157 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVN 72
PC +GIDEAGRGPVLGPMVYG Y P S +Q L L ADSK+L EE+R+ +F + K +
Sbjct: 62 PCQLGIDEAGRGPVLGPMVYGIAYAPLSEKQLLVDLGCADSKSLTEEQRDAIFNKICKQH 121
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
++GWAVD+I P ++ M + K +LNE+S +SAI L V+ G +TE+Y+DTVG
Sbjct: 122 KTIGWAVDVISPNIIANNMYRRVKTSLNEVSMNSAIELAKLVIEAGANITEIYVDTVGVP 181
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+KYQA+L Q FP IK V+KKADS YP+VS ASI AK
Sbjct: 182 QKYQARLEQIFPDIKITVAKKADSTYPIVSAASICAK 218
>gi|209877739|ref|XP_002140311.1| ribonuclease HI large subunit [Cryptosporidium muris RN66]
gi|209555917|gb|EEA05962.1| ribonuclease HI large subunit, putative [Cryptosporidium muris
RN66]
Length = 286
Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 111/163 (68%), Gaps = 3/163 (1%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
P I+GIDEAGRGPVLGPMV+ C Y P ++ L +N DSK L E RE++ +D++ N
Sbjct: 19 PVILGIDEAGRGPVLGPMVFACFYYPTENEKLLKLMNIDDSKKLTENSREKINKDIRNNK 78
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ GW + I+ P+ LS +ML K K NLNEISH +AI LI VL G+ +T +Y+DTVG
Sbjct: 79 NQFGWGIYILLPQYLSCQMLKKQKYNLNEISHTAAINLIKSVLQHGVNVTHIYIDTVGPP 138
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK--RSNF 173
E Y+ KL FPSI V+ KADSLYP VSGASI+AK R +F
Sbjct: 139 ESYKKKLKLLFPSINITVTPKADSLYPCVSGASILAKVERDHF 181
>gi|268612465|pdb|3KIO|A Chain A, Mouse Rnase H2 Complex
Length = 301
Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 84/157 (53%), Positives = 106/157 (67%), Gaps = 1/157 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGP VY YCP S L L ADSKTL E +RE LF + +
Sbjct: 28 PCVLGVDEAGRGPVLGPXVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKXEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S L + K NLN +SHD+A GLI L+ + +T+V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSXLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGXP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQA+L Q FP I+ V KADSL+PVVS ASI AK
Sbjct: 148 ETYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAK 184
>gi|71024097|ref|XP_762278.1| hypothetical protein UM06131.1 [Ustilago maydis 521]
gi|46101780|gb|EAK87013.1| hypothetical protein UM06131.1 [Ustilago maydis 521]
Length = 551
Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 82/160 (51%), Positives = 107/160 (66%), Gaps = 4/160 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVN 72
PC++G+DEAGRGPVLGP+VYG YCP SYQ L + FADSK L E+R+ L L N
Sbjct: 88 PCVLGVDEAGRGPVLGPLVYGIAYCPVSYQDDLKQIGFADSKALTAERRDSLLSALIDQN 147
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+GWAV ++ P+++SA ML + INLN S + + LI VL G+ LTE+Y+DTVGD
Sbjct: 148 SHLGWAVRVMSPQDISAGMLRRRPINLNAQSSQATVSLIAGVLESGVDLTEIYVDTVGDP 207
Query: 133 EKYQAKLSQRFP---SIKFVVSKKADSLYPVVSGASIVAK 169
+ Y LS FP IK+ V+ KAD++YP+V ASI AK
Sbjct: 208 KSYSKLLSSYFPRHSHIKWTVTSKADAIYPIVGAASIAAK 247
>gi|326431468|gb|EGD77038.1| ribonuclease [Salpingoeca sp. ATCC 50818]
Length = 421
Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 84/159 (52%), Positives = 108/159 (67%), Gaps = 3/159 (1%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK--- 70
PCI+G+DEAGRGPV GPMVYG + P ++TL + F DSK +KEE+RE LF ++K
Sbjct: 125 PCILGVDEAGRGPVCGPMVYGVAFAPKPMEKTLKNMGFTDSKVVKEEERERLFTEMKSGS 184
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
++ +GW V + P +S ML + K +LNE+SHD+ IGLI R L+ G+ L VY+DTVG
Sbjct: 185 LHGKMGWKVHSLSPNTISTGMLARQKYSLNELSHDTCIGLIRRCLDQGVNLEAVYVDTVG 244
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
YQAKL FP +K VSKKADS Y +VS ASI AK
Sbjct: 245 PDTVYQAKLQGIFPQLKITVSKKADSKYVIVSAASICAK 283
>gi|322799751|gb|EFZ20956.1| hypothetical protein SINV_11176 [Solenopsis invicta]
Length = 353
Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 117/167 (70%), Gaps = 2/167 (1%)
Query: 5 AALPKWASN-PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKRE 63
+A+PK + PC +G+DEAGRGPVLGPMVYG Y P S +Q L L ADSK+L E+KR+
Sbjct: 70 SAVPKICKDEPCQLGVDEAGRGPVLGPMVYGISYAPLSQKQLLVDLGCADSKSLTEKKRD 129
Query: 64 ELFEDL-KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLT 122
E+F+D+ + +++GWA++ I P +S M + K++LNE+S SA LI + G+ +
Sbjct: 130 EIFDDICERKENIGWAIEAISPNIISNSMYRRTKVSLNEVSMISATNLIQGAIEAGVNVA 189
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E+Y+DTVG E YQA+L FP IK VV+KKAD+ YP+VS ASI AK
Sbjct: 190 EIYVDTVGKPESYQARLKGVFPGIKIVVAKKADATYPIVSAASICAK 236
>gi|297703733|ref|XP_002828781.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease H2 subunit A [Pongo
abelii]
Length = 313
Score = 171 bits (434), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 85/170 (50%), Positives = 109/170 (64%), Gaps = 13/170 (7%)
Query: 13 NPCIMGIDEAGRGPVLGP-------------MVYGCLYCPCSYQQTLATLNFADSKTLKE 59
PC++G+DEAGRGP++GP MVY YCP S L L ADSKTL E
Sbjct: 27 EPCVLGVDEAGRGPLIGPRLPENXHPSSPGPMVYAICYCPLSRLADLEALKVADSKTLLE 86
Query: 60 EKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGI 119
+RE LF ++ D VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+
Sbjct: 87 SERERLFAKMEDRDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGV 146
Query: 120 LLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+T+V++DTVG E YQA+L Q FP I+ V KAD+LYPVVS ASI AK
Sbjct: 147 NVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAK 196
>gi|388580955|gb|EIM21266.1| ribonuclease HII [Wallemia sebi CBS 633.66]
Length = 327
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/159 (52%), Positives = 108/159 (67%), Gaps = 1/159 (0%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-K 70
+N +MG+DEAGRGPVLGP+VYG YC Y+ TL + FADSK L E R+ L + L
Sbjct: 46 NNKVMMGVDEAGRGPVLGPLVYGIAYCNLDYEDTLKDVGFADSKALTAESRQTLLDKLIS 105
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
++D + W+V ++ P+++SA ML K NLN SHD+ LI V+ G+ L VY+DTVG
Sbjct: 106 LSDQLAWSVRVMSPQDISAGMLKKVPYNLNAQSHDATFSLINDVIAKGVQLEHVYVDTVG 165
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
A+ YQAKL FPSI F V+ KADSL+P+VS ASI AK
Sbjct: 166 PAKSYQAKLEAAFPSIGFTVASKADSLFPIVSAASIAAK 204
>gi|302836379|ref|XP_002949750.1| hypothetical protein VOLCADRAFT_104408 [Volvox carteri f.
nagariensis]
gi|300265109|gb|EFJ49302.1| hypothetical protein VOLCADRAFT_104408 [Volvox carteri f.
nagariensis]
Length = 308
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/160 (48%), Positives = 108/160 (67%), Gaps = 2/160 (1%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W +PCI+G+DEAGRGPVLGPMVY +CP S ++ +ADSKTL E RE+LF +
Sbjct: 29 WIRSPCILGVDEAGRGPVLGPMVYASAFCPLS--SDISGRGYADSKTLTHEAREKLFRAI 86
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
N SVGW I+ + +S ML ++K++LN ++ D+ +I L G + +VY+DTV
Sbjct: 87 DANTSVGWVAHIMSAQHISHNMLGRDKVSLNSLAFDATCHVIRTALESGASVKQVYVDTV 146
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
GDA+++ +LS+ FP I F V KADSLYP+VS ASI+AK
Sbjct: 147 GDADRHSERLSRAFPGISFTVCPKADSLYPIVSAASIIAK 186
>gi|431898011|gb|ELK06718.1| Microtubule-associated serine/threonine-protein kinase 1 [Pteropus
alecto]
Length = 1773
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 108/157 (68%), Gaps = 1/157 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +R+ LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLKALKVADSKTLSESERDRLFAKMEEDR 87
Query: 74 S-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ VGWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG
Sbjct: 88 NFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLVQYALDQGVNVAQVFVDTVGLP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQ +L Q FP I+ V KAD+LYPVVS ASI AK
Sbjct: 148 ETYQERLQQCFPDIEVTVKAKADALYPVVSAASICAK 184
>gi|383859304|ref|XP_003705135.1| PREDICTED: ribonuclease H2 subunit A-like [Megachile rotundata]
Length = 334
Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/159 (53%), Positives = 110/159 (69%), Gaps = 1/159 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVN 72
PC +GIDEAGRGPVLGPMVYG Y P S ++ L L ADSK+L EEKR+ +F+ + K
Sbjct: 62 PCQLGIDEAGRGPVLGPMVYGISYAPLSSKELLVELGCADSKSLTEEKRDTIFDKICKEQ 121
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D +GW +D I P +S M ++K +LNE+S SAI L + G+ ++E+Y+DTVG
Sbjct: 122 DKMGWCIDAISPNIISNSMYRRSKTSLNEVSMLSAIELTKMAIEAGVWVSEIYVDTVGKP 181
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRS 171
EKYQA+L + FP IK V+KKADS YP+VS ASI AK S
Sbjct: 182 EKYQARLEEIFPGIKITVAKKADSTYPIVSAASICAKVS 220
>gi|307198751|gb|EFN79554.1| Ribonuclease H2 subunit A [Harpegnathos saltator]
Length = 337
Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 85/161 (52%), Positives = 110/161 (68%), Gaps = 1/161 (0%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-K 70
S PC +G+DEAGRGPVLGPMVYG Y P S +Q L L ADSK+L E+KR+E+F+ + +
Sbjct: 60 SEPCQLGVDEAGRGPVLGPMVYGISYAPLSRKQLLVELGCADSKSLTEKKRDEIFDGICE 119
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
D +GWAV+ I P ++ M + K++LNE S SA LI + G+ + EVY+DTVG
Sbjct: 120 HKDCIGWAVEAISPNVIANSMYRRTKVSLNETSMVSATELIKAAIEAGVNVAEVYVDTVG 179
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRS 171
E YQA+L FP +K VV+KKADS YP+VS ASI AK S
Sbjct: 180 KPETYQARLKAVFPGVKVVVAKKADSTYPIVSAASICAKVS 220
>gi|392594942|gb|EIW84266.1| ribonuclease HII [Coniophora puteana RWD-64-598 SS2]
Length = 298
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 84/160 (52%), Positives = 111/160 (69%), Gaps = 1/160 (0%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
+S P I+G+DEAGRGPVLGPMVYG +CP +Y++ L + FADSKTL +KREEL L
Sbjct: 26 SSGPYILGVDEAGRGPVLGPMVYGVAFCPKAYEEQLEGMGFADSKTLTPQKREELLRVLN 85
Query: 71 VND-SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ ++GWAV ++ P+ +SA ML INLN+ + D+ I LI VL GI L+E+Y+D +
Sbjct: 86 SDPYNLGWAVRVLSPQAISAGMLRNPPINLNKQAQDATILLIQEVLQKGIQLSEIYVDAL 145
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
GD +KY A LS FP I F V KKADSL+ +V AS+ AK
Sbjct: 146 GDCDKYTALLSSIFPGIAFTVRKKADSLFKIVGAASVGAK 185
>gi|395850804|ref|XP_003797965.1| PREDICTED: ribonuclease H2 subunit A [Otolemur garnettii]
Length = 300
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 106/156 (67%), Gaps = 1/156 (0%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-D 73
C++G+DEAGRGPVLGPMVY YCP S+ L L ADSKTL E +R LF ++ + D
Sbjct: 29 CVLGVDEAGRGPVLGPMVYAICYCPLSHLADLEALKVADSKTLSESERNRLFAKMEEDRD 88
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+D++ P +S ML + K NLN +SHD+A LI L+ G+ +++V++DTVG E
Sbjct: 89 FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATALIQYALDQGVKVSQVFVDTVGMPE 148
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
YQ +L Q FP IK V KADSLY VVS ASI AK
Sbjct: 149 TYQKRLQQCFPGIKVTVKAKADSLYSVVSAASICAK 184
>gi|291229986|ref|XP_002734939.1| PREDICTED: RNase H family member (rnh-2)-like [Saccoglossus
kowalevskii]
Length = 303
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 83/159 (52%), Positives = 109/159 (68%), Gaps = 1/159 (0%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-K 70
S PC GIDEAGRGPVLGPMVYG YCP S + LA + FADSKTL EE+REELF + +
Sbjct: 28 SEPCCFGIDEAGRGPVLGPMVYGICYCPISKNEQLAEMGFADSKTLSEEQREELFTKIYE 87
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
N +G+ ++++ P +S M + K +LN +S DSAI L+ + G + EVY+DTVG
Sbjct: 88 ANQVLGYKMEVLSPNIISNSMFRRTKCSLNTVSKDSAIKLLRLTIEEGANIKEVYVDTVG 147
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
DA KYQA L + FP ++ V+ KAD+ +P+VS ASI AK
Sbjct: 148 DASKYQAYLKELFPDLEITVTPKADAKFPIVSAASICAK 186
>gi|115896475|ref|XP_001199108.1| PREDICTED: ribonuclease H2 subunit A-like [Strongylocentrotus
purpuratus]
Length = 324
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 84/157 (53%), Positives = 108/157 (68%), Gaps = 1/157 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK-VN 72
PC GIDEAGRGPVLGPMVYG +CP S+ L L FADSKTL E +RE L + ++ +
Sbjct: 51 PCCFGIDEAGRGPVLGPMVYGTSFCPISWNTQLGELGFADSKTLNEGQREALMKSIQDAS 110
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D +G+ V+I+ P ++ ML +NK +LN +S DSAIGL+ L G+ + EVY+DTVGDA
Sbjct: 111 DYMGYKVEILSPNYIANSMLRRNKHSLNAVSMDSAIGLLRLALADGVQVKEVYVDTVGDA 170
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+KYQ KL FP + V KADS +P+VS ASI AK
Sbjct: 171 KKYQDKLKGLFPDLDITVCPKADSKFPIVSAASICAK 207
>gi|72007775|ref|XP_782683.1| PREDICTED: ribonuclease H2 subunit A-like [Strongylocentrotus
purpuratus]
Length = 324
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 84/157 (53%), Positives = 108/157 (68%), Gaps = 1/157 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK-VN 72
PC GIDEAGRGPVLGPMVYG +CP S+ L L FADSKTL E +RE L + ++ +
Sbjct: 51 PCCFGIDEAGRGPVLGPMVYGTSFCPISWNTQLGELGFADSKTLNEGQREALMKSIQDAS 110
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D +G+ V+I+ P ++ ML +NK +LN +S DSAIGL+ L G+ + EVY+DTVGDA
Sbjct: 111 DYMGYKVEILSPNYIANSMLRRNKHSLNAVSMDSAIGLLRLALADGVQVKEVYVDTVGDA 170
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+KYQ KL FP + V KADS +P+VS ASI AK
Sbjct: 171 KKYQDKLKGLFPDLDITVCPKADSKFPIVSAASICAK 207
>gi|355755510|gb|EHH59257.1| Ribonuclease H2 subunit A [Macaca fascicularis]
Length = 325
Score = 168 bits (426), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 88/183 (48%), Positives = 111/183 (60%), Gaps = 26/183 (14%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFA-------------------- 52
PC++G+DEAGRGPVLGPMVY YCP S+ L L A
Sbjct: 27 EPCVLGVDEAGRGPVLGPMVYAICYCPLSHLADLEALKVAGEPQVWVWEPEVCVWGRDSR 86
Query: 53 -----DSKTLKEEKREELFEDLKVN-DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDS 106
DSKTL E +RE LF ++ N D VGWA+D++ P +S ML + K NLN +SHD+
Sbjct: 87 VCAGADSKTLLESERERLFAKMEENRDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDT 146
Query: 107 AIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASI 166
A GLI L+ G+ +T+V++DTVG E YQA+L Q FP I+ V KAD+LYPVVS ASI
Sbjct: 147 ATGLIQYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASI 206
Query: 167 VAK 169
AK
Sbjct: 207 CAK 209
>gi|389584587|dbj|GAB67319.1| ribonuclease H1 large subunit [Plasmodium cynomolgi strain B]
Length = 279
Score = 168 bits (426), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 88/166 (53%), Positives = 112/166 (67%), Gaps = 5/166 (3%)
Query: 7 LPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF 66
L K+ +GIDEAGRGPVLGPMVY YC +++ L + DSK + E RE +F
Sbjct: 9 LYKFGDEEVRLGIDEAGRGPVLGPMVYAGFYCNKEHEKLLKEMKIDDSKKISEADREMMF 68
Query: 67 EDLKVNDSV---GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
LK+N+S GW + ++ P+++SAKML K K NLNEISHD+AI +I V+N G LTE
Sbjct: 69 --LKLNNSTLPFGWRIHVLMPQDISAKMLKKQKYNLNEISHDTAISIIDHVINRGCNLTE 126
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
V++DTVG A Y+ KL + FP IK V +KADSLYPVVS ASI AK
Sbjct: 127 VFVDTVGKASVYEEKLKKLFPHIKCTVKEKADSLYPVVSAASICAK 172
>gi|86171485|ref|XP_966221.1| ribonuclease HII, putative [Plasmodium falciparum 3D7]
gi|46361187|emb|CAG25051.1| ribonuclease HII, putative [Plasmodium falciparum 3D7]
Length = 288
Score = 168 bits (426), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 87/156 (55%), Positives = 110/156 (70%), Gaps = 5/156 (3%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS-- 74
+GIDEAGRGPVLGPMVY YC +++ L + DSK + E RE++F +K+N+S
Sbjct: 19 LGIDEAGRGPVLGPMVYSGFYCNKEHEKLLKEMKIDDSKKITEADREKMF--VKLNNSKL 76
Query: 75 -VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
GW V I+ P+++SAKML K K NLNEISHD+AI +I V+N G LTEV++DTVG A
Sbjct: 77 PFGWRVHILLPQDISAKMLKKQKYNLNEISHDTAISIIEHVINRGCNLTEVFVDTVGKAS 136
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
Y+ KL + FP IK V +KADSLYPVVS ASI AK
Sbjct: 137 VYEEKLQKMFPHIKCTVKEKADSLYPVVSAASICAK 172
>gi|443898899|dbj|GAC76232.1| ribonuclease HI [Pseudozyma antarctica T-34]
Length = 493
Score = 168 bits (425), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 79/160 (49%), Positives = 110/160 (68%), Gaps = 4/160 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC +G+DEAGRGPVLGP+VYG YCP +YQ +L + FADSK L ++R++L L +D
Sbjct: 84 PCALGVDEAGRGPVLGPLVYGIAYCPVAYQDSLKQIGFADSKALTADRRDQLLSALIDHD 143
Query: 74 S-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ +GWAV ++ P+++SA ML + INLN S + + LI VL G+ +TE+Y+DTVGD
Sbjct: 144 NHLGWAVRVMSPQDISAGMLRRRPINLNAQSSQATVSLIAGVLEQGVDVTEIYVDTVGDP 203
Query: 133 EKYQAKLSQRF---PSIKFVVSKKADSLYPVVSGASIVAK 169
+ Y LS F P IK+ V+ KAD++YP+V ASI AK
Sbjct: 204 KSYARLLSSHFPRHPHIKWTVTSKADAIYPIVGAASIAAK 243
>gi|68067767|ref|XP_675818.1| ribonuclease H1 large subunit [Plasmodium berghei strain ANKA]
gi|56495218|emb|CAH97375.1| ribonuclease H1 large subunit, putative [Plasmodium berghei]
Length = 288
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/156 (55%), Positives = 109/156 (69%), Gaps = 5/156 (3%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS-- 74
+GIDEAGRGPVLGPMVY YC ++ L + DSK + E RE++F K+N+S
Sbjct: 19 LGIDEAGRGPVLGPMVYSGFYCKKEDEKLLKEMKIDDSKKITEHDREKMF--YKLNNSKL 76
Query: 75 -VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
W V I+ P+++SAKML + K NLNEISHD+AI +I VLN G LTEV++DTVG A
Sbjct: 77 PFAWRVHILMPQDISAKMLKRQKYNLNEISHDTAISIIQHVLNRGCNLTEVFVDTVGKAS 136
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
Y+ KL + FP+IK VV +KADSLYPVVS ASI AK
Sbjct: 137 VYEEKLQKLFPNIKCVVKEKADSLYPVVSAASICAK 172
>gi|395513066|ref|XP_003760751.1| PREDICTED: ribonuclease H2 subunit A [Sarcophilus harrisii]
Length = 307
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/156 (52%), Positives = 105/156 (67%), Gaps = 1/156 (0%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVND 73
C +GIDE GR V GPMVYG +CP S L L ADSKTL E +RE LF L + D
Sbjct: 29 CCLGIDEIGRAHVSGPMVYGICFCPLSRLGDLEALKVADSKTLSEAERERLFGKLEQARD 88
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+DI+ P +S M + K NLN +SHD+A+ L+ L+ G+ +T+V++DTVG A+
Sbjct: 89 FVGWALDILSPNLISTSMQRRAKYNLNSLSHDTAMALVQLALDQGVRVTQVFVDTVGPAD 148
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KYQ KL +RFP ++ V KADSL+PVVS ASI AK
Sbjct: 149 KYQQKLKERFPEVEVTVRPKADSLFPVVSAASICAK 184
>gi|91091718|ref|XP_966789.1| PREDICTED: similar to ribonuclease hi large subunit [Tribolium
castaneum]
gi|270001067|gb|EEZ97514.1| hypothetical protein TcasGA2_TC011359 [Tribolium castaneum]
Length = 306
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 80/156 (51%), Positives = 105/156 (67%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PCI+GIDEAGRGPVLGPMVYG +CP + +L ADSK L EE R+ +F + N
Sbjct: 37 PCILGIDEAGRGPVLGPMVYGTAFCPLNEATLPDSLGCADSKALNEESRDVIFSKICANR 96
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
+GW V++I P + ML++ K +LN++S D+AI LI L G+ L+ VY+DTVG E
Sbjct: 97 KMGWGVEVIAPNSICNSMLSRQKYSLNQVSMDAAINLIKMALKGGVNLSHVYVDTVGPPE 156
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KYQA L FP++ V+KKADS +P+VS ASI AK
Sbjct: 157 KYQAYLKSLFPNVGVTVAKKADSTFPIVSAASICAK 192
>gi|169859580|ref|XP_001836428.1| ribonuclease H2 subunit A [Coprinopsis cinerea okayama7#130]
gi|116502486|gb|EAU85381.1| ribonuclease H2 subunit A [Coprinopsis cinerea okayama7#130]
Length = 308
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 81/160 (50%), Positives = 109/160 (68%), Gaps = 1/160 (0%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
A P I+G+DEAGRGPVLGP+VYG YCP +Y++TL L FADSKTL + R L L
Sbjct: 37 APGPYILGVDEAGRGPVLGPLVYGVAYCPVAYKETLEELGFADSKTLTADTRSSLISTLC 96
Query: 71 VNDS-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ S +GW+V +I P+ +S+ ML K NLN+ S D+ IGLI +V++ GI +TEVY+D +
Sbjct: 97 SDPSNLGWSVRVIAPQAISSGMLKKPPTNLNKQSQDATIGLIRQVIDKGINVTEVYVDAL 156
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G+ Y+A LS FP I F V+ KADS + +V AS+ AK
Sbjct: 157 GNTSTYEAYLSSLFPGIDFTVANKADSKFKIVGAASVAAK 196
>gi|294654510|ref|XP_456567.2| DEHA2A05632p [Debaryomyces hansenii CBS767]
gi|199428939|emb|CAG84523.2| DEHA2A05632p [Debaryomyces hansenii CBS767]
Length = 375
Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 85/166 (51%), Positives = 115/166 (69%), Gaps = 10/166 (6%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT-LNFADSKTLKEEKREELF-----E 67
P ++G+DEAGRGPVLGPMVYG Y SY + L T FADSKTLK++KR +LF E
Sbjct: 87 PVVLGVDEAGRGPVLGPMVYGIAYSLESYSKDLQTKYGFADSKTLKDDKRRQLFQMIENE 146
Query: 68 DLKVNDSVGWAVDIIDPRELSAKMLN----KNKINLNEISHDSAIGLITRVLNIGILLTE 123
D +++ VGWA + +++S+ ML K NLNE +HD+ I LI +VL G+ +T+
Sbjct: 147 DHELHGHVGWATTTMTAKDISSGMLQTVLGKGSYNLNEQAHDTTIQLIKQVLAKGVNVTK 206
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
V++DTVG YQAKLS+ FP++ V+KKADS+YP+VS AS+VAK
Sbjct: 207 VFVDTVGPPASYQAKLSKIFPTVAITVAKKADSIYPIVSTASVVAK 252
>gi|221057860|ref|XP_002261438.1| ribonuclease H1 large subunit [Plasmodium knowlesi strain H]
gi|194247443|emb|CAQ40843.1| ribonuclease H1 large subunit, putative [Plasmodium knowlesi strain
H]
Length = 288
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 86/166 (51%), Positives = 112/166 (67%), Gaps = 5/166 (3%)
Query: 7 LPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF 66
L K+ +GIDEAGRGPVLGPMVY YC +++ L + DSK + E RE +F
Sbjct: 9 LYKFGDEEVRLGIDEAGRGPVLGPMVYAGFYCNKEHEKLLKEMKIDDSKKISEADREMMF 68
Query: 67 EDLKVNDS---VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
K+N+S GW + ++ P+++SAKML K K NLNEISHD+AI +I V++ G LTE
Sbjct: 69 H--KLNNSKLPFGWRIHVLMPQDISAKMLKKQKYNLNEISHDTAISIINHVISRGCNLTE 126
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
V++DTVG A Y+ KL++ FP IK V +KADSLYPVVS ASI AK
Sbjct: 127 VFVDTVGKANVYEEKLTKLFPHIKCTVREKADSLYPVVSAASICAK 172
>gi|321262130|ref|XP_003195784.1| ribonuclease HI large subunit [Cryptococcus gattii WM276]
gi|317462258|gb|ADV23997.1| Ribonuclease HI large subunit, putative [Cryptococcus gattii WM276]
Length = 260
Score = 165 bits (418), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 79/154 (51%), Positives = 107/154 (69%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
IMGIDEAGRGPVLGPMVY YCP S++ TL ++ F DSK L E R+ L+E +V+ +
Sbjct: 38 IMGIDEAGRGPVLGPMVYAAAYCPLSFKPTLESIGFDDSKALSAETRQRLWETFEVHSPL 97
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
++ + P+++S+ ML K INLN + DS +GLI LN GI +TE Y+D +G A ++
Sbjct: 98 CYSSSTLSPQDISSSMLRKVPINLNRQAEDSTVGLIQAALNRGINVTECYVDALGPAPQW 157
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
QA+L+ FP+IKF V KADSL+ +V ASIVAK
Sbjct: 158 QARLTAIFPTIKFTVCPKADSLFKIVGAASIVAK 191
>gi|82706071|ref|XP_727229.1| ribonuclease HII [Plasmodium yoelii yoelii 17XNL]
gi|23482972|gb|EAA18794.1| ribonuclease HII, putative [Plasmodium yoelii yoelii]
Length = 307
Score = 165 bits (417), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 87/156 (55%), Positives = 109/156 (69%), Gaps = 5/156 (3%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS-- 74
+GIDEAGRGPVLGPMVY YC ++ L + DSK + E RE++F K+N+S
Sbjct: 19 LGIDEAGRGPVLGPMVYSGFYCKKEDEKLLKEMKIDDSKKITEHDREKMF--YKLNNSKL 76
Query: 75 -VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
W V I+ P+++SAKML K K NLNEISHD+AI +I VL+ G LTEV++DTVG A
Sbjct: 77 PFAWRVHILMPQDISAKMLKKEKYNLNEISHDTAISIIQHVLSRGCNLTEVFVDTVGKAS 136
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
Y+ KL + FP+IK VV +KADSLYPVVS ASI AK
Sbjct: 137 VYEEKLQKLFPNIKCVVKEKADSLYPVVSAASICAK 172
>gi|413916151|gb|AFW56083.1| hypothetical protein ZEAMMB73_828983 [Zea mays]
Length = 277
Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 81/125 (64%), Positives = 102/125 (81%), Gaps = 5/125 (4%)
Query: 53 DSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKN-----KINLNEISHDSA 107
DSKTLKEE+REELFE LKVN S+ W VD+I P++LSAKML K+ K+NLNEISH+SA
Sbjct: 2 DSKTLKEEQREELFESLKVNSSIRWEVDVIRPKDLSAKMLKKSHCFRSKVNLNEISHNSA 61
Query: 108 IGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIV 167
+GL+ +VL++G+LL E Y+DTVGD +KY+ KL+++F KFVV+KK DSLY VVSGASIV
Sbjct: 62 MGLVRKVLDMGVLLAEAYIDTVGDLKKYRIKLTEKFTGFKFVVAKKVDSLYTVVSGASIV 121
Query: 168 AKRSN 172
AK N
Sbjct: 122 AKNIN 126
>gi|302765497|ref|XP_002966169.1| hypothetical protein SELMODRAFT_439531 [Selaginella moellendorffii]
gi|300165589|gb|EFJ32196.1| hypothetical protein SELMODRAFT_439531 [Selaginella moellendorffii]
Length = 361
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/153 (56%), Positives = 106/153 (69%), Gaps = 21/153 (13%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
MGIDEAGRGPVLGPMVYGC YC +Y++ LA+L FAD + K + F
Sbjct: 1 MGIDEAGRGPVLGPMVYGCAYCAVAYKEELASLKFAD---IDRGKTRKAF---------- 47
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
REL ++ K +LN+IS+DSAIGLI VL+ G+LL+EVY+DTVGDAEKYQ
Sbjct: 48 --------RELEGGPIDGVKRSLNDISYDSAIGLIKLVLSRGVLLSEVYVDTVGDAEKYQ 99
Query: 137 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
A+LS+ FP IKF V+KKADSL+P+VS ASI AK
Sbjct: 100 ARLSELFPHIKFTVAKKADSLFPIVSAASIAAK 132
>gi|388857401|emb|CCF49075.1| related to 35 kDa ribonuclease H [Ustilago hordei]
Length = 548
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/160 (48%), Positives = 107/160 (66%), Gaps = 4/160 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGP+VYG YCP SYQ + + FADSK L E+R+ L L +
Sbjct: 80 PCVLGVDEAGRGPVLGPLVYGIAYCPISYQDDMKQIGFADSKALTAERRDNLLSALVDHK 139
Query: 74 S-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+GW+V ++ P+++SA ML + INLN S + + LI VL G+ +TE+Y+DTVGD
Sbjct: 140 QYLGWSVRVMSPQDISAGMLRRRPINLNAQSSQATVLLIAGVLEEGVDVTEIYVDTVGDP 199
Query: 133 EKYQAKLSQRF---PSIKFVVSKKADSLYPVVSGASIVAK 169
Y+ LS F P IK+ V+ KAD++YP+V ASI AK
Sbjct: 200 NSYKKLLSSHFPRHPHIKWTVTSKADAIYPIVGAASIAAK 239
>gi|358053836|dbj|GAA99968.1| hypothetical protein E5Q_06671 [Mixia osmundae IAM 14324]
Length = 367
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/173 (48%), Positives = 106/173 (61%), Gaps = 16/173 (9%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL--- 69
P ++GIDEAGRGPVLGPMVYG YCP +Y+ L L FADSKTL +R EL L
Sbjct: 84 TPYMLGIDEAGRGPVLGPMVYGAAYCPIAYEGQLERLGFADSKTLTAARRSELLRVLCKP 143
Query: 70 -------------KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN 116
+D++ WAV ++ P ++S ML K NLN SHD+ I LI V+
Sbjct: 144 ARGAHMSGAALSDPSSDNLEWAVRVMSPFDISRGMLRKTPYNLNAQSHDATIMLIRDVIQ 203
Query: 117 IGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+G + E Y+DTVG A +YQ LS FP+IKF V+ KADS+YP+V ASI AK
Sbjct: 204 MGYNIAEAYIDTVGIASQYQDFLSGVFPTIKFTVTSKADSIYPIVGAASIAAK 256
>gi|389749729|gb|EIM90900.1| ribonuclease H2 subunit A [Stereum hirsutum FP-91666 SS1]
Length = 317
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/160 (49%), Positives = 106/160 (66%), Gaps = 1/160 (0%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
AS P I+G+DEAGRGPVLGP+VYG YCP SYQ+ L L FADSKTL R L + L
Sbjct: 34 ASGPYILGVDEAGRGPVLGPLVYGIAYCPASYQEELEGLGFADSKTLTATTRSALLKSLS 93
Query: 71 VNDS-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ S +GW+V ++ P+ +S+ ML + NLN S D+ + LI VL G+ L+EVY+D +
Sbjct: 94 DDPSNLGWSVRVVSPQAISSGMLRRPPTNLNRQSEDATVLLIREVLQRGLELSEVYVDAL 153
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G + Y+A LS +FP I F V+ KADS + +V AS+ AK
Sbjct: 154 GPTKTYEAYLSSQFPGINFTVTAKADSKFKIVGAASVAAK 193
>gi|342319084|gb|EGU11035.1| Ribonuclease [Rhodotorula glutinis ATCC 204091]
Length = 346
Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 106/155 (68%), Gaps = 1/155 (0%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED-LKVNDS 74
++G+DEAGRGP LGP VYG +C SY+ TL + FADSKTL + REELF+D L+ D
Sbjct: 77 MLGVDEAGRGPALGPQVYGIAFCQLSYESTLKEMGFADSKTLTDPLREELFKDILEHKDD 136
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
V +AV ++ P ++S ML K NLN SHD I LI V+ G + + ++DTVG A
Sbjct: 137 VKYAVTVMSPNDISMGMLRKVPYNLNAQSHDVTINLIREVVERGYKIKQCFVDTVGPAAD 196
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
YQ+KLS FP+I F V+ KAD+L+P+VS ASIVAK
Sbjct: 197 YQSKLSSFFPTINFTVTSKADALFPIVSAASIVAK 231
>gi|156101113|ref|XP_001616250.1| ribonuclease H1 large subunit [Plasmodium vivax Sal-1]
gi|148805124|gb|EDL46523.1| ribonuclease H1 large subunit , putative [Plasmodium vivax]
Length = 288
Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 85/166 (51%), Positives = 110/166 (66%), Gaps = 5/166 (3%)
Query: 7 LPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF 66
L K+ +GIDEAGRGPVLGPMVY YC +++ L + DSK + E RE +F
Sbjct: 9 LYKFGDEEVRLGIDEAGRGPVLGPMVYAGFYCNKEHEKLLKEMKIDDSKKISEADREMMF 68
Query: 67 EDLKVNDS---VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
K+N+S GW + ++ P+++SAKML K K NLNEISHD+AI +I V++ G LTE
Sbjct: 69 H--KLNNSSLPFGWRIHVLMPQDISAKMLKKQKYNLNEISHDTAISIIDHVISRGCNLTE 126
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
V++DTVG Y+ KL + FP IK V +KADSLYPVVS ASI AK
Sbjct: 127 VFVDTVGKPSVYEEKLKRLFPHIKCTVKEKADSLYPVVSAASICAK 172
>gi|324509653|gb|ADY44053.1| Ribonuclease H2 subunit A [Ascaris suum]
Length = 298
Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 82/163 (50%), Positives = 107/163 (65%), Gaps = 4/163 (2%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
+ PC++GIDEAGRGPVLGPMVY C P + L L DSK L EEKR ++FE++
Sbjct: 25 SGKPCVLGIDEAGRGPVLGPMVYACAISPLDAAEQLKELGVDDSKALTEEKRTQIFENMN 84
Query: 71 VNDS----VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL 126
++ V +A ++ R +SA+ML + K +LNE+SH SAI LI L GI +TE+Y+
Sbjct: 85 NEENTTKVVAYAYRVLSARLISAEMLRRCKYSLNELSHTSAINLIKFALENGINVTEIYV 144
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
DTVG YQAKL FP+I V++KADSL+PVV ASI AK
Sbjct: 145 DTVGPKSTYQAKLQAHFPNISITVTEKADSLFPVVGAASIAAK 187
>gi|242010277|ref|XP_002425895.1| ribonuclease hi large subunit, putative [Pediculus humanus
corporis]
gi|212509871|gb|EEB13157.1| ribonuclease hi large subunit, putative [Pediculus humanus
corporis]
Length = 271
Score = 162 bits (410), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 108/157 (68%), Gaps = 1/157 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVN 72
PCI+G+DEAGRGPVLGPMVY +C + L + DSK L E+KRE++F+ + + N
Sbjct: 46 PCILGVDEAGRGPVLGPMVYSVFFCSINDADILKDIGCTDSKVLTEKKREDIFDLINQNN 105
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D +GWAVD++ P +S +ML + K +LNEI+ +S I LI +L I L ++++DT+G A
Sbjct: 106 DKLGWAVDLLSPNLISNRMLQRKKYSLNEIAQNSTIKLIESLLEKNITLKDIFVDTIGPA 165
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+KYQ KLS+ FP+ K V KAD LYPVV ASI AK
Sbjct: 166 DKYQEKLSKLFPNSKVTVKSKADLLYPVVGAASICAK 202
>gi|159467162|ref|XP_001691767.1| predicted protein [Chlamydomonas reinhardtii]
gi|158279113|gb|EDP04875.1| predicted protein [Chlamydomonas reinhardtii]
Length = 266
Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 76/161 (47%), Positives = 107/161 (66%), Gaps = 5/161 (3%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
+W PCI+G+DEAGRGPVLGPMVY C + S +++ +ADSKTL E RE+LF+
Sbjct: 30 EWTKAPCILGVDEAGRGPVLGPMVYACAFT--SVSTDISSRGYADSKTLTHETREKLFKA 87
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
+ + VGW I+ + +S ML ++K +LN ++ D+ +I R L G VY+DT
Sbjct: 88 IDADSGVGWVAHIMSAQFISGHMLGRDKTSLNALAFDATCAIIRRALESG---ANVYVDT 144
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
VGDA++++ +LS+ FP + F V KADSLYP+VS ASIVAK
Sbjct: 145 VGDADRHRDRLSRAFPGLDFTVCPKADSLYPIVSAASIVAK 185
>gi|320582951|gb|EFW97168.1| ribonuclease HI large subunit [Ogataea parapolymorpha DL-1]
Length = 303
Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/165 (52%), Positives = 111/165 (67%), Gaps = 9/165 (5%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATL-NFADSKTLKEEKREELFEDLKVN 72
P I+G+DEAGRGPVLGPMVYG YC Y L ++ FADSKTL E+R++L + +
Sbjct: 40 PVILGVDEAGRGPVLGPMVYGIAYCLKDYSSDLKSVYGFADSKTLTVERRDQLMKSIIEP 99
Query: 73 D-----SVGWAVDIIDPRELSAKMLNK---NKINLNEISHDSAIGLITRVLNIGILLTEV 124
D +VGWA + R++S++ML INLNE +HD+ I LI VL+ + L EV
Sbjct: 100 DGDLCQNVGWATTTMTARDISSEMLKPRLIGNINLNEQAHDATIKLIQGVLDQKVNLKEV 159
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
Y+DTVG + YQ KLS RFP IK V+KKADSL+P+VS ASIVAK
Sbjct: 160 YVDTVGPPDSYQRKLSSRFPGIKVTVTKKADSLFPIVSTASIVAK 204
>gi|56754417|gb|AAW25396.1| SJCHGC03278 protein [Schistosoma japonicum]
Length = 289
Score = 161 bits (408), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 85/155 (54%), Positives = 105/155 (67%), Gaps = 1/155 (0%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED-LKVNDS 74
++GIDEAGRGPVLGPMVY C P + L T+ ADSKTL E +RE+L +D L D
Sbjct: 1 MLGIDEAGRGPVLGPMVYACALSPINRLNELTTIGLADSKTLSEIQREKLLQDMLNKCDW 60
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ V +I P ++ KML+++K +LN ISHDSAI LI VL+ GI L EVY+DTVG AE
Sbjct: 61 MSAVVHVISPVYITEKMLDRSKTSLNVISHDSAIQLIQTVLDSGINLVEVYVDTVGKAEH 120
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
Y+AKL FP +K V KAD YP+VS ASI AK
Sbjct: 121 YEAKLQNLFPQLKIRVESKADDTYPIVSAASIFAK 155
>gi|254565155|ref|XP_002489688.1| Ribonuclease H2 catalytic subunit, removes RNA primers during
Okazaki fragment synthesis [Komagataella pastoris GS115]
gi|238029484|emb|CAY67407.1| Ribonuclease H2 catalytic subunit, removes RNA primers during
Okazaki fragment synthesis [Komagataella pastoris GS115]
gi|328350107|emb|CCA36507.1| ribonuclease H2 subunit A [Komagataella pastoris CBS 7435]
Length = 314
Score = 161 bits (408), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 83/164 (50%), Positives = 106/164 (64%), Gaps = 8/164 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE-----D 68
PC +G+DEAGRGPV+GPMVYG YC Y+ L FADSKTL E+KR EL E D
Sbjct: 49 PCCLGVDEAGRGPVVGPMVYGVSYCLEEYEPRLKDFGFADSKTLTEQKRSELLESLCNGD 108
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKI---NLNEISHDSAIGLITRVLNIGILLTEVY 125
++ +VGWA I ++S+ ML + I NLNE +HD + LI +V+ G+ L VY
Sbjct: 109 HELRKNVGWATTSISACDISSAMLKPHNIGNYNLNEQAHDVTMELIDKVIQKGVNLRHVY 168
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+DTVG YQ KL QRFP++ VSKKAD++YP VS AS+ AK
Sbjct: 169 VDTVGPPASYQKKLQQRFPALLITVSKKADAIYPCVSSASVCAK 212
>gi|339242469|ref|XP_003377160.1| ribonuclease H2 subunit A [Trichinella spiralis]
gi|316974057|gb|EFV57595.1| ribonuclease H2 subunit A [Trichinella spiralis]
Length = 418
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 111/166 (66%), Gaps = 3/166 (1%)
Query: 7 LPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF 66
LP + C +G+DEAGRGPVLGPMVY C C + L+TL DSKTL E++R +F
Sbjct: 172 LPNFVGKHCTLGVDEAGRGPVLGPMVYACGVCVTDNLEQLSTLKAKDSKTLTEDERSTIF 231
Query: 67 EDLKVNDS---VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
++++ + + + ++ P +S ML ++K NLNEISHD+A+ LI V + G+++ +
Sbjct: 232 KNMQSEKNSHLFAYTMKLLSPVYISKSMLGRSKYNLNEISHDTAMELIQIVCDAGVVVDK 291
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
V LDTVG EKY+AKL RFP I +VSKKADSL+ +VS ASI AK
Sbjct: 292 VILDTVGPTEKYEAKLRSRFPKIDILVSKKADSLHTIVSAASICAK 337
>gi|58271424|ref|XP_572868.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57229127|gb|AAW45561.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 260
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 105/154 (68%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
IMGIDEAGRGPVLGPMVY YCP S++ L ++ F DSK L E R+ L+E V+ +
Sbjct: 38 IMGIDEAGRGPVLGPMVYAAAYCPLSFKPILESIGFDDSKALSAETRQTLWESFGVHPPL 97
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
++ + P+++S+ ML K INLN + D+ +GLI LN GI +TE Y+D +G A ++
Sbjct: 98 CYSSSTLSPQDISSNMLRKVPINLNRQAEDATVGLIQAALNRGINVTECYVDALGPAPQW 157
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
QA+L+ FP+IKF V KADSL+ +V ASIVAK
Sbjct: 158 QARLTAIFPTIKFTVCPKADSLFKIVGAASIVAK 191
>gi|256078514|ref|XP_002575540.1| ribonuclease hi large subunit [Schistosoma mansoni]
gi|353232311|emb|CCD79666.1| putative ribonuclease hi large subunit [Schistosoma mansoni]
Length = 290
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/155 (54%), Positives = 104/155 (67%), Gaps = 1/155 (0%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED-LKVNDS 74
++GIDEAGRGPVLGPMVY C P S L T+ ADSKTL E +RE+L ++ L D
Sbjct: 1 MLGIDEAGRGPVLGPMVYACALSPISQLNELETIGLADSKTLNENQREKLLKEMLNKCDW 60
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ V +I P ++ KML+K+K +LN ISHDSAI LI VL+ G+ L EVY+DTVG AE
Sbjct: 61 ISAVVHVISPVYITEKMLDKSKTSLNVISHDSAIQLIQSVLDSGVNLVEVYVDTVGKAEH 120
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
Y+ KL FP +K V KAD YP+VS ASI AK
Sbjct: 121 YETKLQNLFPQLKIRVESKADDTYPIVSAASIFAK 155
>gi|409048828|gb|EKM58306.1| hypothetical protein PHACADRAFT_182662 [Phanerochaete carnosa
HHB-10118-sp]
Length = 294
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/160 (48%), Positives = 104/160 (65%), Gaps = 1/160 (0%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
A P I+G+DEAGRGPVLGP+VYG YCP SY++ L L FADSKTL R L + L
Sbjct: 29 AEGPYILGVDEAGRGPVLGPLVYGVAYCPASYKEDLDKLGFADSKTLNASTRSSLLDTLS 88
Query: 71 VNDS-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ + +GW+V ++ P+ +SA ML INLN S D+ I LI VL G+ L+EVY+D +
Sbjct: 89 SDPANIGWSVRVLAPQAISAGMLRHPPINLNRQSEDATILLIREVLESGVKLSEVYVDAL 148
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G + ++ LS FP I F V+ KADS + +VS AS+ AK
Sbjct: 149 GPPQAWEKALSTMFPGISFTVTAKADSKFKIVSAASVAAK 188
>gi|50551451|ref|XP_503199.1| YALI0D23661p [Yarrowia lipolytica]
gi|49649067|emb|CAG81399.1| YALI0D23661p [Yarrowia lipolytica CLIB122]
Length = 315
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/165 (49%), Positives = 111/165 (67%), Gaps = 8/165 (4%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSY-QQTLATLNFADSKTLKEEKREELFEDLKV 71
PCI+G+DEAGRGPVLG MVYG YC + + L+ FADSKTL EKR L ++
Sbjct: 40 KPCILGVDEAGRGPVLGSMVYGLAYCTKEFADEELSKTGFADSKTLTAEKRSALMREICC 99
Query: 72 NDSV----GWAVDIIDPRELSAKML---NKNKINLNEISHDSAIGLITRVLNIGILLTEV 124
++++ GW + +++S+ ML ++ NLN+ +HD+ + LI VL+ G+LLTE
Sbjct: 100 DETLVEHLGWCTTSMTAQDISSAMLRPMSRGVYNLNDQAHDTTMALIQGVLDRGVLLTEA 159
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
Y+DTVG Y AKLS++FP IKF V+KKADSL+P+VS ASI AK
Sbjct: 160 YIDTVGPPASYTAKLSKQFPHIKFTVTKKADSLFPIVSAASICAK 204
>gi|344299617|gb|EGW29970.1| hypothetical protein SPAPADRAFT_63592 [Spathaspora passalidarum
NRRL Y-27907]
Length = 355
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/162 (52%), Positives = 109/162 (67%), Gaps = 9/162 (5%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF---EDL--KV 71
+G+DEAGRGPVLGPMVYG YC YQ L FADSK LK+EKR+ LF EDL ++
Sbjct: 82 LGVDEAGRGPVLGPMVYGIAYCLKEYQPKLKEYGFADSKVLKDEKRQSLFKQMEDLSHEL 141
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNK----INLNEISHDSAIGLITRVLNIGILLTEVYLD 127
++VGWA + +++S+ ML NLNE +HD+ I LI +VL G+ +TEV++D
Sbjct: 142 YENVGWATTTMTAKDISSGMLQSTAGTGAYNLNEQAHDTTIELIKQVLAKGVNVTEVFVD 201
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
TVG YQ KL FP I VV+KKADS+YP+VS AS+VAK
Sbjct: 202 TVGPPITYQNKLKSLFPGIDIVVTKKADSIYPIVSTASVVAK 243
>gi|393221211|gb|EJD06696.1| hypothetical protein FOMMEDRAFT_165421 [Fomitiporia mediterranea
MF3/22]
Length = 336
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 77/160 (48%), Positives = 106/160 (66%), Gaps = 1/160 (0%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
A P I+G+DEAGRGP LGPMVYG YCP SY+ L L FADSK L + R L E L
Sbjct: 65 AKGPYILGVDEAGRGPALGPMVYGVAYCPVSYKGQLEELGFADSKALTHDNRAGLLEILS 124
Query: 71 VN-DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ +++GW+V +I P+ +S+ ML + NLN+ + ++ I LI VL+ GI+L+EVY+D +
Sbjct: 125 SDPENLGWSVRVISPQAISSGMLRRPPTNLNKQAENATITLIQEVLDRGIVLSEVYVDAL 184
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G+ Y+ LS FP+I F V+ KADS + +V ASI AK
Sbjct: 185 GNTTTYEKHLSNLFPNISFTVTAKADSKFKIVGAASIAAK 224
>gi|336383681|gb|EGO24830.1| hypothetical protein SERLADRAFT_361719 [Serpula lacrymans var.
lacrymans S7.9]
Length = 329
Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 81/160 (50%), Positives = 102/160 (63%), Gaps = 1/160 (0%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
A P I+G+DEAGRGPVLGP+VYG YCP SYQ L L FADSKTL EKR L L
Sbjct: 36 APGPYILGVDEAGRGPVLGPLVYGVAYCPASYQADLEELGFADSKTLTAEKRSLLLSILG 95
Query: 71 VN-DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ ++GW+V +I P+ +S+ ML NLN S D+ I LI V+ GI L+EVY+D +
Sbjct: 96 SDPKNLGWSVRVISPQAISSGMLRVPPTNLNRQSQDATILLIREVIQRGIQLSEVYVDAL 155
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G Y+A LS FP I F V+ KADS + +V AS+ AK
Sbjct: 156 GTTTTYEAYLSSVFPGINFTVTTKADSKFKIVGAASVAAK 195
>gi|294891483|ref|XP_002773596.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC
50983]
gi|239878780|gb|EER05412.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC
50983]
Length = 339
Score = 158 bits (399), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 85/161 (52%), Positives = 104/161 (64%), Gaps = 8/161 (4%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED-----LKV 71
+GIDEAGRGPV GPMVYG L + F DSK L E KR ELFED LK
Sbjct: 56 LGIDEAGRGPVFGPMVYGAAISDIRKSDALGKMGFNDSKQLTEAKRSELFEDIHNEALKD 115
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
+ +G+AV ++ E+S KML +NK+NLN ISH++AIGLI L+ GI + EVY+DTVGD
Sbjct: 116 DGVLGFAVHVLTAHEISTKMLRRNKVNLNRISHETAIGLIEHALSEGINVKEVYVDTVGD 175
Query: 132 AEKYQAKLSQRFPSI---KFVVSKKADSLYPVVSGASIVAK 169
E+YQ KLS F VV KKAD++YP+ S ASI AK
Sbjct: 176 PERYQNKLSSIFKRRGVDTIVVCKKADAIYPICSAASICAK 216
>gi|341896396|gb|EGT52331.1| hypothetical protein CAEBREN_16035 [Caenorhabditis brenneri]
gi|341900120|gb|EGT56055.1| CBN-RNH-2 protein [Caenorhabditis brenneri]
Length = 297
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/167 (47%), Positives = 105/167 (62%), Gaps = 4/167 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE----DL 69
PC++GIDEAGRGPVLGPMVY P L L DSK L E KREE+FE D
Sbjct: 21 PCVLGIDEAGRGPVLGPMVYAAAISPLDQNDELKALGVDDSKALNEAKREEIFEKMNNDE 80
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
++ V +A+ + P +S+ ML + K +LNE+SHD+AI LI LN + + E+ +DTV
Sbjct: 81 EIQQLVAYALRALSPELISSSMLKRQKYSLNEVSHDAAIALIRDALNCNVNVVEIKVDTV 140
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
G YQAKL + FP I V++KADSL+P+VS ASI AK + R+
Sbjct: 141 GPKATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDHRL 187
>gi|406606142|emb|CCH42502.1| Ribonuclease H2 subunit A [Wickerhamomyces ciferrii]
Length = 343
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 113/165 (68%), Gaps = 9/165 (5%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT-LNFADSKTLKEEKREELFEDL--- 69
PC++G+DEAGRGPVLGPMVYG YC +Y+ L + FADSKTL E KR L + +
Sbjct: 66 PCVLGVDEAGRGPVLGPMVYGISYCLKNYESILKSKYGFADSKTLNELKRTNLLKQICDQ 125
Query: 70 --KVNDSVGWAVDIIDPRELSAKMLNKNKI---NLNEISHDSAIGLITRVLNIGILLTEV 124
++ + +GW+ + ++S+ ML + NLNE +HD+ + LI VL+ G+ LTE+
Sbjct: 126 EGELFEQIGWSTRTMTAMDISSGMLRPPSVGNYNLNEQAHDATMDLIQGVLDQGVNLTEI 185
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
++DTVG YQAKL +RFP++K +V+KKADS+YP+VS ASI AK
Sbjct: 186 FVDTVGPPVTYQAKLQKRFPNLKIIVAKKADSIYPIVSAASICAK 230
>gi|146421659|ref|XP_001486774.1| hypothetical protein PGUG_00151 [Meyerozyma guilliermondii ATCC
6260]
Length = 343
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/164 (49%), Positives = 112/164 (68%), Gaps = 10/164 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL-ATLNFADSKTLKEEKREELFE-----DL 69
++G+DEAGRGPVLGPMVYG YC SYQ+ L FADSK LKE+KR ELF D
Sbjct: 73 VLGVDEAGRGPVLGPMVYGISYCLESYQEDLKHKYGFADSKVLKEDKRRELFYMVELMDH 132
Query: 70 KVNDSVGWAVDIIDPRELSAKMLN----KNKINLNEISHDSAIGLITRVLNIGILLTEVY 125
++N++VGWA + R++S+ ML NLNE +H++ I LI VL++G+ + +V+
Sbjct: 133 ELNENVGWATRTMTARDISSAMLQGRGAAGGANLNEQAHNTTIQLIREVLDLGVNVKKVF 192
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+DTVG YQ KL FP+++ V+KKADS++P+VS AS+VAK
Sbjct: 193 VDTVGPPATYQKKLQGIFPTLEITVTKKADSIFPIVSTASVVAK 236
>gi|448119560|ref|XP_004203761.1| Piso0_000780 [Millerozyma farinosa CBS 7064]
gi|359384629|emb|CCE78164.1| Piso0_000780 [Millerozyma farinosa CBS 7064]
Length = 368
Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 114/174 (65%), Gaps = 9/174 (5%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREE 64
+A+ P ++G+DEAGRGPVLGPMVYG Y YQ L F+DSKTLKE R +
Sbjct: 80 SAIASQPDEPLVLGVDEAGRGPVLGPMVYGIAYTLEKYQPELKKFGFSDSKTLKEGVRTD 139
Query: 65 LF-----EDLKVNDSVGWAVDIIDPRELSAKML----NKNKINLNEISHDSAIGLITRVL 115
L E+ +++++VGWA I +++S+ ML K NLN+ +HD+ I LI +++
Sbjct: 140 LLQKIEDEEHELHNNVGWATTQISAKDISSGMLRSSLGKGAYNLNDQAHDTTIELIQQII 199
Query: 116 NIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
N + + ++++DTVG YQAKL +RFP I+ V+KKADSL+PVVS ASIVAK
Sbjct: 200 NRKLNIAKIFVDTVGPPASYQAKLQKRFPGIEVTVTKKADSLFPVVSTASIVAK 253
>gi|213404976|ref|XP_002173260.1| ribonuclease H2 subunit A [Schizosaccharomyces japonicus yFS275]
gi|212001307|gb|EEB06967.1| ribonuclease H2 subunit A [Schizosaccharomyces japonicus yFS275]
Length = 321
Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 106/164 (64%), Gaps = 8/164 (4%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-- 69
+ P ++G+DEAGRGPVLGPMVY +CP + L+ FADSK L EKR +L + +
Sbjct: 57 TQPFVLGVDEAGRGPVLGPMVYAVAFCPTELK--LSEYGFADSKQLTAEKRTQLLQAVCD 114
Query: 70 ---KVNDSVGWAVDIIDPRELSAKMLNK-NKINLNEISHDSAIGLITRVLNIGILLTEVY 125
+ S+GWA ++ R++S ML + +K NLN +HDS I LI VL G ++E+Y
Sbjct: 115 RNNPASTSIGWATTVMTARDISRGMLRRVDKYNLNAQAHDSTIALIQSVLKAGYNISEIY 174
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+DTVG YQAKL RFP K V+KKADSL+P+VS ASI AK
Sbjct: 175 VDTVGPPAVYQAKLQNRFPQAKVTVTKKADSLFPIVSLASICAK 218
>gi|403220433|dbj|BAM38566.1| ribonuclease [Theileria orientalis strain Shintoku]
Length = 284
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/167 (52%), Positives = 106/167 (63%), Gaps = 6/167 (3%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLN---FADSKTLKEEKREELFEDL-K 70
I+GIDEAGRGPVLGPMVYG +CP T N DSK L E RE F L K
Sbjct: 23 VILGIDEAGRGPVLGPMVYGGFFCPKGPDSTSILKNKIRVDDSKKLTEAYRENKFHLLNK 82
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
G ++I P+ +S KML +NK NLNEISH++AI +I V+++G L EVY+D VG
Sbjct: 83 PEYPFGMIAEVITPQYISYKMLQRNKYNLNEISHETAISIIRHVISLGYNLKEVYIDAVG 142
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK--RSNFER 175
KYQ+KLS+ FP I F V +KADS+YP VS ASI+AK R N R
Sbjct: 143 TVSKYQSKLSKLFPKISFSVREKADSIYPTVSAASIIAKVIRDNMIR 189
>gi|354545252|emb|CCE41979.1| hypothetical protein CPAR2_805280 [Candida parapsilosis]
Length = 381
Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 81/169 (47%), Positives = 111/169 (65%), Gaps = 11/169 (6%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA-TLNFADSKTLKEEKREELFEDLK 70
+ P ++GIDEA RGPVLGPMVYG Y + L T FADSK L ++KR++LF+ ++
Sbjct: 101 TKPVVIGIDEARRGPVLGPMVYGLAYSLKDFSSKLQKTYGFADSKQLTDDKRQQLFQMIE 160
Query: 71 ------VNDSVGWAVDIIDPRELSAKMLNK----NKINLNEISHDSAIGLITRVLNIGIL 120
+N +GWA + +++S+ ML NLNE +HD+ I LI +V+N GI
Sbjct: 161 DADQHELNKHIGWATTTMTAKDISSGMLRSVHGIGAYNLNEQAHDATINLIKQVINQGIN 220
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+TE+Y+DTVG YQAKL + FP+I VSKKADS+YP+VS AS+VAK
Sbjct: 221 VTEIYVDTVGPPVSYQAKLKKLFPTIDITVSKKADSVYPIVSTASVVAK 269
>gi|448537761|ref|XP_003871401.1| Rnh35 ribonuclease H2 catalytic subunit [Candida orthopsilosis Co
90-125]
gi|380355758|emb|CCG25276.1| Rnh35 ribonuclease H2 catalytic subunit [Candida orthopsilosis]
Length = 375
Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/169 (47%), Positives = 109/169 (64%), Gaps = 11/169 (6%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA-TLNFADSKTLKEEKREELF---- 66
+ P ++GIDEAGRGPVLGPMVYG Y + L T FADSK L ++KR++LF
Sbjct: 94 TKPVVIGIDEAGRGPVLGPMVYGLAYSLKEFSGKLQKTYGFADSKQLTDDKRQQLFQMIE 153
Query: 67 --EDLKVNDSVGWAVDIIDPRELSAKMLNK----NKINLNEISHDSAIGLITRVLNIGIL 120
E ++N +GWA + +++S+ ML NLNE +HD+ I LI V+ G+
Sbjct: 154 DVEQHELNKHIGWATTTMTAKDISSGMLRSVHGIGAYNLNEQAHDATINLIKSVIEQGVN 213
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+TE+Y+DTVG YQAKL + FP+I V+KKADS+YP+VS AS+VAK
Sbjct: 214 VTEIYVDTVGPPISYQAKLKKHFPTIDITVAKKADSIYPIVSTASVVAK 262
>gi|391332532|ref|XP_003740688.1| PREDICTED: ribonuclease H2 subunit A-like [Metaseiulus
occidentalis]
Length = 295
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 83/158 (52%), Positives = 104/158 (65%), Gaps = 3/158 (1%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
C++GIDEAGRGPVLGPMVYG Y P S + + DSK L E RE+LFE ++
Sbjct: 30 CVLGIDEAGRGPVLGPMVYGTAYWPLSKSKHFGEMGLDDSKVLSEADREKLFELYNKENA 89
Query: 75 V-GWAVDIIDPRELSAKMLNKN--KINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
+ GW + I P +S ML K+ + +LNE+SH++AI LI L G+ +TEVY+DTVG
Sbjct: 90 ISGWHLVCISPVTISKSMLAKDNQRESLNELSHNAAIHLIRVTLRRGVRVTEVYVDTVGP 149
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
EKY+AKL FP IK VSKKADSL+ VS ASI AK
Sbjct: 150 PEKYEAKLQALFPEIKITVSKKADSLFKCVSAASICAK 187
>gi|426199388|gb|EKV49313.1| hypothetical protein AGABI2DRAFT_149543 [Agaricus bisporus var.
bisporus H97]
Length = 300
Score = 155 bits (393), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 77/160 (48%), Positives = 103/160 (64%), Gaps = 1/160 (0%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
A P I+G+DEAGRGPVLGP+VYG YCP S++ L L FADSKTL E R LF+ L
Sbjct: 29 AEGPYILGVDEAGRGPVLGPLVYGVAYCPVSFKGKLEGLGFADSKTLAAEARSSLFDTLS 88
Query: 71 VNDS-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
S +GW+V +I P+ +S+ M+ + INLN S ++ LI L G+ LTEVY+D +
Sbjct: 89 SEPSNLGWSVRVICPQAISSGMMKRPPINLNVQSREATFLLIRETLAKGVQLTEVYVDAL 148
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G+ Y+ LS+ FP I F V+ KADS + +V AS+ AK
Sbjct: 149 GNTTTYEKDLSELFPGITFTVTTKADSKFKIVGAASVAAK 188
>gi|260946247|ref|XP_002617421.1| hypothetical protein CLUG_02865 [Clavispora lusitaniae ATCC 42720]
gi|238849275|gb|EEQ38739.1| hypothetical protein CLUG_02865 [Clavispora lusitaniae ATCC 42720]
Length = 345
Score = 155 bits (393), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 108/166 (65%), Gaps = 10/166 (6%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT-LNFADSKTLKEEKREELF-----E 67
P ++G+DEAGRGPVLGPMVYG YC YQ L FADSKTLK+ R+ELF E
Sbjct: 71 PVVLGVDEAGRGPVLGPMVYGISYCLRDYQDHLKKKYGFADSKTLKDSTRQELFQLIDNE 130
Query: 68 DLKVNDSVGWAVDIIDPRELSAKMLNK----NKINLNEISHDSAIGLITRVLNIGILLTE 123
+++ +VGWA + +++S ML NLNE +HD+ I LI VL G+ + E
Sbjct: 131 KHELHKNVGWATCTMTAKDISNGMLRSALGAGSYNLNEQAHDTTIQLIKDVLLSGVNVRE 190
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+++DTVG YQAKL + FPSI V+KKADS+YP+VS AS+VAK
Sbjct: 191 IFVDTVGPPVSYQAKLKKHFPSIDITVTKKADSIYPIVSTASVVAK 236
>gi|190344386|gb|EDK36053.2| hypothetical protein PGUG_00151 [Meyerozyma guilliermondii ATCC
6260]
Length = 343
Score = 155 bits (393), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 81/164 (49%), Positives = 111/164 (67%), Gaps = 10/164 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL-ATLNFADSKTLKEEKREELFE-----DL 69
++G+DEAGRGPVLGPMVYG YC SYQ+ L FADSK LKE+KR ELF D
Sbjct: 73 VLGVDEAGRGPVLGPMVYGISYCLESYQEDLKHKYGFADSKVLKEDKRRELFYMVESMDH 132
Query: 70 KVNDSVGWAVDIIDPRELSAKMLN----KNKINLNEISHDSAIGLITRVLNIGILLTEVY 125
++N++VGWA + R++S+ ML NLNE +H++ I LI VL+ G+ + +V+
Sbjct: 133 ELNENVGWATRTMTARDISSAMLQGRGAAGGANLNEQAHNTTIQLIREVLDSGVNVKKVF 192
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+DTVG YQ KL FP+++ V+KKADS++P+VS AS+VAK
Sbjct: 193 VDTVGPPATYQKKLQGIFPTLEITVTKKADSIFPIVSTASVVAK 236
>gi|290991286|ref|XP_002678266.1| predicted protein [Naegleria gruberi]
gi|284091878|gb|EFC45522.1| predicted protein [Naegleria gruberi]
Length = 245
Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 87/166 (52%), Positives = 106/166 (63%), Gaps = 9/166 (5%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQT---LATLNFADSKTLKEEKREELFEDL 69
N +MGIDEAGRGPVLGP+VY C++C Y T + DSK L + RE++F+ L
Sbjct: 11 NAYVMGIDEAGRGPVLGPLVYACMFCKSKYNTDNFLKKTFHVNDSKKLTAKMREKIFKTL 70
Query: 70 KVNDS-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI----GILLTEV 124
K N V + I+ E+S KML++ K NLN ISHD AI LI G L EV
Sbjct: 71 KENSKIVHYITCIVQSDEISHKMLSRKKYNLNLISHDCAIHLIKTASETLSKKGKYLKEV 130
Query: 125 YLDTVGDAEKYQAKLSQRFPSIK-FVVSKKADSLYPVVSGASIVAK 169
Y+DTVGD +KYQAKL ++FP I+ VV KKADS YPVV GASIVAK
Sbjct: 131 YIDTVGDPKKYQAKLQEKFPEIESIVVDKKADSKYPVVGGASIVAK 176
>gi|294890217|ref|XP_002773106.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC
50983]
gi|239878004|gb|EER04922.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC
50983]
Length = 350
Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 86/170 (50%), Positives = 106/170 (62%), Gaps = 8/170 (4%)
Query: 8 PKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE 67
P A+ +GIDEAGRGPV GPMVYG L + F DSK L E KR ELFE
Sbjct: 46 PDDAARYYQLGIDEAGRGPVFGPMVYGAAISDIRKSDALGKMGFNDSKQLTEAKRSELFE 105
Query: 68 D-----LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLT 122
LK + +G+AV ++ E+S KML +NK+NLN ISH++AIGLI L+ GI +
Sbjct: 106 GIHNEALKDDGVLGFAVHVLTAHEISTKMLRRNKVNLNRISHETAIGLIEHALSEGINVK 165
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSI---KFVVSKKADSLYPVVSGASIVAK 169
EVY+DTVGD E+YQ KLS F VV KKAD++YP+ S ASI AK
Sbjct: 166 EVYVDTVGDPERYQNKLSSIFKRRGVDTIVVCKKADAIYPICSAASICAK 215
>gi|363753492|ref|XP_003646962.1| hypothetical protein Ecym_5390 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890598|gb|AET40145.1| hypothetical protein Ecym_5390 [Eremothecium cymbalariae
DBVPG#7215]
Length = 306
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 82/160 (51%), Positives = 106/160 (66%), Gaps = 6/160 (3%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA-TLNFADSKTLKEEKREELFEDLKVND- 73
I+G+DEAGRGPVLGPMVYG YC SYQ ++ + F DSK L + R LFE + D
Sbjct: 37 ILGVDEAGRGPVLGPMVYGVAYCTKSYQDSVVKSYGFDDSKKLTDPIRRRLFEKIYNGDI 96
Query: 74 -SVGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+G+A I P ++S ML + NLNE +HD IGLI +VL+ G+ ++ +Y+DTV
Sbjct: 97 DGIGYATTSITPFDISTGMLRYPPEQNYNLNEQAHDVTIGLIQKVLDAGVNISHIYVDTV 156
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G YQ KL +RFP KF V+KKADSLYPVVS AS++AK
Sbjct: 157 GPPITYQDKLEKRFPVCKFTVAKKADSLYPVVSVASVIAK 196
>gi|19114596|ref|NP_593684.1| ribonuclease H2 complex subunit Rnh201 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|1723422|sp|Q10236.1|RNH2A_SCHPO RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|1204203|emb|CAA93552.1| ribonuclease H2 complex subunit Rnh201 (predicted)
[Schizosaccharomyces pombe]
Length = 326
Score = 155 bits (391), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 85/164 (51%), Positives = 105/164 (64%), Gaps = 8/164 (4%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-- 69
S P +G+DEAGRGPVLGPMVY YCP + L FADSKTL KREEL + +
Sbjct: 61 SQPYRLGVDEAGRGPVLGPMVYAVAYCPVDFD--LTNYGFADSKTLASLKREELLKLICN 118
Query: 70 ---KVNDSVGWAVDIIDPRELSAKMLN-KNKINLNEISHDSAIGLITRVLNIGILLTEVY 125
++ +VGW+ I REL+A ML +NK NLN +HD+ I LI +V GI +TE+Y
Sbjct: 119 KSNELGKNVGWSTMSISARELAAGMLRYRNKYNLNLQAHDTTIDLIKKVYESGINVTEIY 178
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+DTVG YQ KL FP K V+KKADSL+P+VS ASI AK
Sbjct: 179 VDTVGPPISYQEKLQAHFPQAKVTVTKKADSLFPIVSLASICAK 222
>gi|345568395|gb|EGX51289.1| hypothetical protein AOL_s00054g359 [Arthrobotrys oligospora ATCC
24927]
Length = 353
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 77/161 (47%), Positives = 108/161 (67%), Gaps = 8/161 (4%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS-- 74
+G+DEAGRGPVLGPMVYG YC Y+++L+ F DSK L E R +L +++ +D+
Sbjct: 85 LGVDEAGRGPVLGPMVYGIAYCVSDYEKSLSKKGFDDSKKLTAEVRSDLLQEICTSDTEL 144
Query: 75 ---VGWAVDIIDPRELSAKMLNKNKI---NLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
VGWAV ++ R++++ ML + N+N +HD+ + LI VL G+ + E+++DT
Sbjct: 145 HANVGWAVRVMSARDITSGMLRPAGVGTYNINAQAHDTTMNLIDEVLKKGVNVKEIFVDT 204
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
VG A YQAKL +RFP+ K VSKKADSLYP VS AS+ AK
Sbjct: 205 VGPAVTYQAKLQRRFPTTKVTVSKKADSLYPSVSVASVCAK 245
>gi|328872786|gb|EGG21153.1| ribonuclease H2 subunit A [Dictyostelium fasciculatum]
Length = 303
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 105/156 (67%), Gaps = 2/156 (1%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF-EDLKVNDS 74
IMGIDEAGRGPVLGP+VYG + P +T+ + F DSK L E++RE+LF + +K D
Sbjct: 44 IMGIDEAGRGPVLGPLVYGACFAPLKEIETIKKMKFNDSKKLTEQQREQLFIKIIKSPDV 103
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+G+ DI P LS KM K +L+ ISH SA +I VL+ G + E+YLDTVG A K
Sbjct: 104 IGFVSDINTPEYLSEKMCAKMPTSLDVISHGSAFKMIRTVLDRGYNVQELYLDTVGPALK 163
Query: 135 YQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAK 169
YQ KL FPSI K VVS KADS+YP+VS SIVAK
Sbjct: 164 YQTKLQIAFPSIGKIVVSSKADSIYPIVSAGSIVAK 199
>gi|336370925|gb|EGN99265.1| hypothetical protein SERLA73DRAFT_160724 [Serpula lacrymans var.
lacrymans S7.3]
Length = 313
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/162 (50%), Positives = 102/162 (62%), Gaps = 3/162 (1%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
A P I+G+DEAGRGPVLGP+VYG YCP SYQ L L FADSKTL EKR L L
Sbjct: 36 APGPYILGVDEAGRGPVLGPLVYGVAYCPASYQADLEELGFADSKTLTAEKRSLLLSILG 95
Query: 71 VN-DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE--VYLD 127
+ ++GW+V +I P+ +S+ ML NLN S D+ I LI V+ GI L+E VY+D
Sbjct: 96 SDPKNLGWSVRVISPQAISSGMLRVPPTNLNRQSQDATILLIREVIQRGIQLSEVGVYVD 155
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+G Y+A LS FP I F V+ KADS + +V AS+ AK
Sbjct: 156 ALGTTTTYEAYLSSVFPGINFTVTTKADSKFKIVGAASVAAK 197
>gi|449540326|gb|EMD31319.1| hypothetical protein CERSUDRAFT_163191 [Ceriporiopsis subvermispora
B]
Length = 318
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 102/157 (64%), Gaps = 1/157 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVN 72
P I+G+DEAGRGPVLGPMVYG YCP SY+ L + F DSK LK E R L + L +
Sbjct: 38 PYILGVDEAGRGPVLGPMVYGVAYCPASYKDRLEDMGFDDSKALKPETRASLLKTLCSDS 97
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+++ W+V ++ P+ +S ML + +NLN + + I LI VL GI L+E+Y+D +G+
Sbjct: 98 ENLAWSVRVLSPQGISNGMLRRPPVNLNRQAEQATILLIREVLQSGIQLSEIYVDALGNT 157
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQ LS++FP I V KADSL+ +V AS+ AK
Sbjct: 158 ETYQTYLSKQFPGINITVKAKADSLFKIVGAASVAAK 194
>gi|268559996|ref|XP_002637939.1| C. briggsae CBR-RNH-2 protein [Caenorhabditis briggsae]
Length = 297
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 104/167 (62%), Gaps = 4/167 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE----DL 69
PC++GIDEAGRGPVLGPMVY P L L DSK L E KREE+FE D
Sbjct: 21 PCVLGIDEAGRGPVLGPMVYAAAISPMDQNAELKALGVDDSKALNEAKREEIFEKINNDE 80
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
++ V +A+ + P +S+ ML ++K +LNE+SHD+AI LI + + E+ +DTV
Sbjct: 81 EIQQIVAYAIRSLSPELISSSMLKRHKYSLNEVSHDAAIALIRDAFACNVNVVEIKVDTV 140
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
G YQAKL + FP I V++KADSL+P+VS ASI AK + R+
Sbjct: 141 GPKATYQAKLERLFPGISICVTEKADSLFPIVSAASIAAKVTRDTRL 187
>gi|238883322|gb|EEQ46960.1| ribonuclease HI large subunit [Candida albicans WO-1]
Length = 427
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/168 (47%), Positives = 110/168 (65%), Gaps = 10/168 (5%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT-LNFADSKTLKEEKREELFE--- 67
+ P ++G+DEAGRGPVLGPMVYG Y S+ L FADSK L + KREELF+
Sbjct: 148 TEPIVLGVDEAGRGPVLGPMVYGIAYSLESFSSKLQKEYGFADSKVLTDVKREELFKQIE 207
Query: 68 --DLKVNDSVGWAVDIIDPRELSAKMLN----KNKINLNEISHDSAIGLITRVLNIGILL 121
D +++ +GWA + R++S+ ML K NLNE +HD+ I LI +VL G+ +
Sbjct: 208 DPDHELHKHIGWATTTMTARDISSGMLQSVNGKGAYNLNEQAHDTTINLIKQVLAKGVKI 267
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+++++DTVG YQAKL + FP I V+KKADS+YP+VS AS+VAK
Sbjct: 268 SKIFVDTVGPPVTYQAKLKRFFPEIDVTVTKKADSIYPIVSTASVVAK 315
>gi|302683973|ref|XP_003031667.1| hypothetical protein SCHCODRAFT_55770 [Schizophyllum commune H4-8]
gi|300105360|gb|EFI96764.1| hypothetical protein SCHCODRAFT_55770 [Schizophyllum commune H4-8]
Length = 286
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/160 (48%), Positives = 103/160 (64%), Gaps = 1/160 (0%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL- 69
AS I+G+DEAGRGPVLGP+VYG Y + ++ + + FADSKTL +RE L E L
Sbjct: 26 ASGKYILGVDEAGRGPVLGPLVYGVAYVAETGKERMEAMGFADSKTLDAARREALLETLC 85
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
D +GWAV +I P+ LS+ ML + NLNE S D+ + LI VL GI L+ V++D +
Sbjct: 86 SAPDVLGWAVRVISPQALSSGMLRRPPTNLNEQSRDATVMLIRGVLARGIQLSAVFVDAL 145
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G Y+ LSQRFP IKF V+ KADS + +V AS+ AK
Sbjct: 146 GPTVAYEQWLSQRFPEIKFTVANKADSKFKIVGAASVAAK 185
>gi|68469222|ref|XP_721398.1| likely Ribonuclease HII [Candida albicans SC5314]
gi|68470247|ref|XP_720885.1| likely Ribonuclease HII [Candida albicans SC5314]
gi|77022682|ref|XP_888785.1| hypothetical protein CaO19_6562 [Candida albicans SC5314]
gi|46442777|gb|EAL02064.1| likely Ribonuclease HII [Candida albicans SC5314]
gi|46443315|gb|EAL02598.1| likely Ribonuclease HII [Candida albicans SC5314]
gi|76573598|dbj|BAE44682.1| hypothetical protein [Candida albicans]
Length = 431
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/168 (47%), Positives = 110/168 (65%), Gaps = 10/168 (5%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT-LNFADSKTLKEEKREELFE--- 67
+ P ++G+DEAGRGPVLGPMVYG Y S+ L FADSK L + KREELF+
Sbjct: 151 TEPIVLGVDEAGRGPVLGPMVYGIAYSLESFSSKLQKEYGFADSKVLTDVKREELFKQIE 210
Query: 68 --DLKVNDSVGWAVDIIDPRELSAKMLN----KNKINLNEISHDSAIGLITRVLNIGILL 121
D +++ +GWA + R++S+ ML K NLNE +HD+ I LI +VL G+ +
Sbjct: 211 DPDHELHKHIGWATTTMTARDISSGMLQSVNGKGAYNLNEQAHDTTINLIKQVLAKGVKI 270
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+++++DTVG YQAKL + FP I V+KKADS+YP+VS AS+VAK
Sbjct: 271 SKIFVDTVGPPVTYQAKLKRFFPEIDVTVTKKADSIYPIVSTASVVAK 318
>gi|403414687|emb|CCM01387.1| predicted protein [Fibroporia radiculosa]
Length = 317
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/160 (46%), Positives = 105/160 (65%), Gaps = 1/160 (0%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
A P I+G+DEAGRGPVLGP+VYG YCP +YQ+ L +L FADSKTL R L + L
Sbjct: 37 AIGPYILGVDEAGRGPVLGPLVYGVAYCPTAYQEDLDSLGFADSKTLTAGTRSSLLQTLC 96
Query: 71 VNDS-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ + +GW+V ++ P+ +S+ ML + NLN S + + LI VL GI L++VY+D +
Sbjct: 97 SDPANLGWSVRVLCPQAISSGMLRRPPTNLNRQSEQATVLLIREVLQHGIKLSDVYVDAL 156
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G + Y+A LS +FP I F V+ KADS + +V AS+ AK
Sbjct: 157 GPTKTYEAYLSSQFPGINFTVTAKADSKFKIVGAASVAAK 196
>gi|308509890|ref|XP_003117128.1| CRE-RNH-2 protein [Caenorhabditis remanei]
gi|308242042|gb|EFO85994.1| CRE-RNH-2 protein [Caenorhabditis remanei]
Length = 323
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 104/167 (62%), Gaps = 4/167 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE----DL 69
PC++GIDEAGRGPVLGPMVY P L L DSK L E KREE+F+ D
Sbjct: 47 PCVLGIDEAGRGPVLGPMVYAAAISPLDQNTELKNLGVDDSKALNEAKREEIFDKMNNDE 106
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
++ V +A+ + P +SA ML ++K +LNE+SHD+AI LI + + E+ +DTV
Sbjct: 107 EIQQVVAYAIRSLSPELISASMLKRHKYSLNEVSHDAAIALIKDAFACNVNVVEIKVDTV 166
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
G YQAKL + FP I V++KADSL+P+VS ASI AK + R+
Sbjct: 167 GPKATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDTRL 213
>gi|299473412|emb|CBN77810.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 320
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 101/155 (65%), Gaps = 1/155 (0%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRGPVLGPM YG Y C+ + ++ F DSK L ++R LF+ + V
Sbjct: 51 ILGIDEAGRGPVLGPMTYGAAYWSCADDKEMSAKGFDDSKALTSDQRTSLFDRIDRTPEV 110
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
GW + +I RELS KM K +LN ISHD+A LI V G+ +T+VY+DTVGD Y
Sbjct: 111 GWVLRLISARELSDKMCRKVPYSLNVISHDAAAELIRAVQARGVKVTQVYVDTVGDPAFY 170
Query: 136 QAKLSQRF-PSIKFVVSKKADSLYPVVSGASIVAK 169
Q+KL + F IKFVV+KKADSLY S ASIVAK
Sbjct: 171 QSKLEKEFGKGIKFVVAKKADSLYKTASAASIVAK 205
>gi|170099025|ref|XP_001880731.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644256|gb|EDR08506.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 302
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/160 (46%), Positives = 103/160 (64%), Gaps = 1/160 (0%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
A P I+G+DEAGRGPVLGP+VYG YCP SY++ + L FADSKTL + R L L
Sbjct: 30 APGPYIVGVDEAGRGPVLGPLVYGIAYCPASYKEDMEELGFADSKTLNSDTRLSLLNTLS 89
Query: 71 VN-DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+++GW+V ++ P+ +S+ ML + NLN S D+ I L+ VL GI ++EVY+D +
Sbjct: 90 SQPENLGWSVRVVSPQAISSGMLCRPPTNLNRQSQDATILLLREVLAKGIQVSEVYVDAL 149
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G Y+A LS FP I F V+ KADS + +V AS+ AK
Sbjct: 150 GTTTTYEAYLSSLFPGIDFTVTTKADSKFKIVGAASVAAK 189
>gi|150864655|ref|XP_001383577.2| hypothetical protein PICST_31007 [Scheffersomyces stipitis CBS
6054]
gi|149385911|gb|ABN65548.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 347
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 108/166 (65%), Gaps = 10/166 (6%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT-LNFADSKTLKEEKREELF-----E 67
P ++G+DEAGRGPVLGPMVYG + Y L FADSKTLKEEKR+ELF E
Sbjct: 70 PVVLGVDEAGRGPVLGPMVYGIAFALEKYSTRLQKEYGFADSKTLKEEKRDELFYSIEDE 129
Query: 68 DLKVNDSVGWAVDIIDPRELSAKMLNK----NKINLNEISHDSAIGLITRVLNIGILLTE 123
++N +VGWA + R++S+ ML NLNE +HD+ I LI V+ G+ + +
Sbjct: 130 ANELNRNVGWATTTMTARDISSGMLRSVLGIGNYNLNEQAHDTTIQLIKEVIAKGVNVKK 189
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+Y+DTVG YQAKL + FP + V+KKADS+YP+VS AS++AK
Sbjct: 190 IYVDTVGPPVTYQAKLQKIFPETEVTVAKKADSIYPIVSTASVMAK 235
>gi|390595476|gb|EIN04881.1| ribonuclease H2 subunit A [Punctularia strigosozonata HHB-11173
SS5]
Length = 341
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/169 (49%), Positives = 106/169 (62%), Gaps = 2/169 (1%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQT-LATLNFADSKTLKEEKREELFEDL 69
A P IMG+DEAGRGPVLGP+VYG YC ++ + L L FADSKTL E R +L E L
Sbjct: 33 APGPYIMGVDEAGRGPVLGPLVYGVAYCTAEFRDSGLQELGFADSKTLTPEVRSQLLETL 92
Query: 70 KVN-DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
N + + W+V ++ P+ LSA ML INLN S ++ I LI VL GI LTEVY+D
Sbjct: 93 SSNPEKLSWSVRVLCPQALSAGMLRIPPINLNRQSEEATILLIREVLQKGIELTEVYVDA 152
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
+G EKY+ LS FP I V KADSL+ +V AS+ AK + E ++
Sbjct: 153 LGPPEKYEKYLSSVFPGISITVRNKADSLFKIVGAASVAAKVTRDECLE 201
>gi|118355616|ref|XP_001011067.1| ribonuclease HII family protein [Tetrahymena thermophila]
gi|89292834|gb|EAR90822.1| ribonuclease HII family protein [Tetrahymena thermophila SB210]
Length = 284
Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/161 (51%), Positives = 108/161 (67%), Gaps = 8/161 (4%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF---EDLKVN 72
+MGIDEAGRGPVLGPMVYGC P Y+ L F DSK L E+KR++L+ E+LK N
Sbjct: 14 VMGIDEAGRGPVLGPMVYGCCVWPIQYEPELKLEGFNDSKQLTEQKRDQLYARMEELK-N 72
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D + + V I+ LS +ML KN+ +LNE+S ++A LI V++ G +T+V+LDTVG
Sbjct: 73 DKLYFEVRILSAEFLSNRMLAKNRDSLNELSFNAAYSLIDSVMSQGFNVTQVFLDTVGKE 132
Query: 133 EKYQAKLSQ----RFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQAKL Q +P +KF VS KAD+ +PVV ASI AK
Sbjct: 133 ETYQAKLYQDYKYTYPQLKFTVSSKADAKFPVVGAASICAK 173
>gi|301100786|ref|XP_002899482.1| ribonuclease H2 subunit A, putative [Phytophthora infestans T30-4]
gi|262103790|gb|EEY61842.1| ribonuclease H2 subunit A, putative [Phytophthora infestans T30-4]
Length = 791
Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 78/157 (49%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
P ++GIDEAGRGPV+GPMVYG Y P + + L F DSK L E R +LFE ++ +
Sbjct: 26 PVMLGIDEAGRGPVMGPMVYGAAYWPVAVNDAMCALGFDDSKALSAESRAQLFEKMQSTE 85
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
+GW V +I E+S KM + NLNE+S D+AI LI V N G ++ +V++DTVGD
Sbjct: 86 GLGWIVRLISAAEISDKM-QRQTSNLNEMSRDAAIQLINEVQNKGAVVKKVFVDTVGDPR 144
Query: 134 KYQAKLSQRF-PSIKFVVSKKADSLYPVVSGASIVAK 169
YQ+ L++ F +I+F V KKADSL+ VVS ASI AK
Sbjct: 145 WYQSFLTKHFNGTIEFRVEKKADSLFKVVSAASIAAK 181
>gi|395332583|gb|EJF64962.1| ribonuclease H2 subunit A [Dichomitus squalens LYAD-421 SS1]
Length = 304
Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 102/160 (63%), Gaps = 1/160 (0%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
A P +G+DEAGRGPVLGP+VYG YCP +Y++ L L F DSKTL + R L E L
Sbjct: 36 APGPYFLGVDEAGRGPVLGPLVYGVAYCPLAYKEQLEQLGFTDSKTLTAQVRSSLLETLG 95
Query: 71 VND-SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ ++GW+V ++ P+++SA ML + NLN+ S ++ + LI VL G+ L+EVY+D +
Sbjct: 96 SDPVNLGWSVRVLSPKDISAGMLKRPPTNLNQQSQNATVLLIREVLARGVQLSEVYVDAL 155
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G Y+A LS FP I F V KAD + +V AS+ AK
Sbjct: 156 GRTTSYEAYLSSLFPDIAFTVQAKADLTFKIVGAASVAAK 195
>gi|344234362|gb|EGV66232.1| ribonuclease HII [Candida tenuis ATCC 10573]
gi|344234363|gb|EGV66233.1| hypothetical protein CANTEDRAFT_112777 [Candida tenuis ATCC 10573]
Length = 337
Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 82/174 (47%), Positives = 111/174 (63%), Gaps = 9/174 (5%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREE 64
+ +PK P I+G+DEAGRGP+LGPMVY YC Y+ L F DSK LK E R
Sbjct: 70 SHIPKVGDTPLILGVDEAGRGPILGPMVYTVAYCKEDYESDLKRYGFDDSKVLKHEFRLG 129
Query: 65 LF-----EDLKVNDSVGWAVDIIDPRELSAKML--NKNKINLNEISHDSAIGLITRVLNI 117
L+ +D ++N +G+ I+ +++S+ ML ++ NLNE +HD+ I LI ++
Sbjct: 130 LYKLIDQKDHELNQKIGYLSSILSAKDISSGMLRVHQGNYNLNEQAHDATINLIKALVEK 189
Query: 118 GILLTEVYLDTVGDAEKYQAKLSQRFPS--IKFVVSKKADSLYPVVSGASIVAK 169
+ + VY+DTVG EKYQAKLS F S IKF V+KKADSLYP+VS ASI+AK
Sbjct: 190 KVNIKRVYVDTVGPPEKYQAKLSNIFSSYNIKFTVTKKADSLYPIVSCASIIAK 243
>gi|71031853|ref|XP_765568.1| ribonuclease H1 large subunit [Theileria parva strain Muguga]
gi|68352525|gb|EAN33285.1| ribonuclease H1 large subunit, putative [Theileria parva]
Length = 277
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/164 (52%), Positives = 105/164 (64%), Gaps = 8/164 (4%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYC----PCSYQQTLAT-LNFADSKTLKEEKREELF 66
S+ I+GIDEAGRGPVLGPMVYG +C C + L + DSK L E RE F
Sbjct: 21 SDEVILGIDEAGRGPVLGPMVYGGFFCIKGDDC--KSILKNKIRVDDSKKLTETMRENKF 78
Query: 67 EDLK-VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVY 125
L N G ++I P+ +S KML ++K NLNEISHD+AI +I VL+ G L EVY
Sbjct: 79 YQLNDPNYPFGVVAEVITPQYISYKMLQRDKYNLNEISHDTAISIIRHVLDHGYNLKEVY 138
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+D VG KY+AKLS+ FP I F V +KADS+YP VS ASIVAK
Sbjct: 139 IDAVGTVNKYEAKLSKLFPKIHFSVREKADSIYPTVSAASIVAK 182
>gi|84999888|ref|XP_954665.1| ribonuclease h1 large subunit [Theileria annulata]
gi|65305660|emb|CAI73985.1| ribonuclease h1 large subunit, putative [Theileria annulata]
Length = 277
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/163 (51%), Positives = 104/163 (63%), Gaps = 6/163 (3%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCP----CSYQQTLATLNFADSKTLKEEKREELFE 67
S+ I+GIDEAGRGPVLGPMVYG +C C+ + DSK L E RE F
Sbjct: 21 SDYVILGIDEAGRGPVLGPMVYGGFFCTKGDNCN-SILKNKIKVDDSKKLSESMRENKFY 79
Query: 68 DLKVNDS-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL 126
L D G ++I P+ +S KML + K NLNEISHD+AI +I VL+ G L EVY+
Sbjct: 80 QLNDPDHPFGVVAEVITPQYISYKMLQREKYNLNEISHDTAISIIRHVLSHGYNLKEVYI 139
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
D VG KY++KLS+ FP I+F V +KADS+YP VS ASIVAK
Sbjct: 140 DAVGTVNKYESKLSKMFPKIQFSVREKADSIYPTVSAASIVAK 182
>gi|255731726|ref|XP_002550787.1| ribonuclease HI 35 large subunit [Candida tropicalis MYA-3404]
gi|240131796|gb|EER31355.1| ribonuclease HI 35 large subunit [Candida tropicalis MYA-3404]
Length = 356
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 107/170 (62%), Gaps = 12/170 (7%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT-LNFADSKTLKEEKREELF---E 67
S P ++G+DEAGRGPVLGPMVYG Y S+ L FADSK L E KREELF E
Sbjct: 75 SEPIVLGVDEAGRGPVLGPMVYGVAYALESFSDGLQKKYGFADSKVLTESKREELFRLIE 134
Query: 68 DLKVNDS-----VGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGI 119
+ N+ +GWA + R++S+ ML K NLN +HD I LI +VL G+
Sbjct: 135 ESSDNEKGLSKVIGWATTSMTARDISSGMLQSSGKGAYNLNSQAHDVTINLIKQVLKKGV 194
Query: 120 LLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
++++++DTVG YQAKL FP I+ V+KKADS+YP+VS AS+VAK
Sbjct: 195 KISKIFVDTVGPPATYQAKLKGIFPDIEITVAKKADSIYPIVSAASVVAK 244
>gi|134114978|ref|XP_773787.1| hypothetical protein CNBH2390 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256415|gb|EAL19140.1| hypothetical protein CNBH2390 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 326
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 105/172 (61%), Gaps = 18/172 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
IMGIDEAGRGPVLGPMVY YCP S++ L ++ F DSK L E R+ L+E V+ +
Sbjct: 38 IMGIDEAGRGPVLGPMVYAAAYCPLSFKPILESIGFDDSKALSAETRQTLWESFDVHPPL 97
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV----------- 124
++ + P+++S+ ML K INLN + D+ +GLI LN GI +TE
Sbjct: 98 CYSSSTLSPQDISSNMLRKVPINLNRQAEDATVGLIQAALNRGINVTEASFSCSLAASCW 157
Query: 125 -------YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
Y+D +G A ++QA+L+ FP+IKF V KADSL+ +V ASIVAK
Sbjct: 158 LTICLKCYVDALGPAPQWQARLTAIFPTIKFTVCPKADSLFKIVGAASIVAK 209
>gi|281202692|gb|EFA76894.1| hypothetical protein PPL_09646 [Polysphondylium pallidum PN500]
Length = 1257
Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 106/155 (68%), Gaps = 2/155 (1%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-DSV 75
MGIDEAGRGPVLGP+VY Y P + + L F DSK L E +RE LF+ + N + +
Sbjct: 995 MGIDEAGRGPVLGPLVYAACYVPDCNLERMRKLRFDDSKKLTEAQRETLFKTILGNYELL 1054
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
G+ D+ +P LS KML+K +++L+ ISH SA LI +VL+ G + +Y+DTVG KY
Sbjct: 1055 GFVSDVNEPSMLSEKMLSKQQVSLDSISHGSAFNLIQQVLDKGYNIESLYVDTVGPPAKY 1114
Query: 136 QAKLSQRFPSIK-FVVSKKADSLYPVVSGASIVAK 169
+AK+ FPSIK VVSKKADSLYP+VS ASI AK
Sbjct: 1115 EAKIRVAFPSIKNVVVSKKADSLYPIVSAASICAK 1149
>gi|17536263|ref|NP_495796.1| Protein RNH-2 [Caenorhabditis elegans]
gi|11387113|sp|Q9U6P6.1|RNH2A_CAEEL RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=RNase H(35); AltName: Full=Ribonuclease HI
large subunit; Short=RNase HI large subunit; AltName:
Full=Ribonuclease HI subunit A
gi|6010657|gb|AAF01208.1|AF181619_1 putative ribonuclease H2 large subunit [Caenorhabditis elegans]
gi|15718212|emb|CAC70103.1| Protein RNH-2 [Caenorhabditis elegans]
Length = 297
Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 102/167 (61%), Gaps = 4/167 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF----EDL 69
PC++GIDEAGRGPVLGPMVY P L L DSK L E KREE+F ED
Sbjct: 21 PCVLGIDEAGRGPVLGPMVYAAAISPLDQNVELKNLGVDDSKALNEAKREEIFNKMNEDE 80
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ + +A+ + P +S ML + K +LNE+SH++AI LI L + + E+ +DTV
Sbjct: 81 DIQQIIAYALRCLSPELISCSMLKRQKYSLNEVSHEAAITLIRDALACNVNVVEIKVDTV 140
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
G YQAKL + FP I V++KADSL+P+VS ASI AK + R+
Sbjct: 141 GPKATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDSRL 187
>gi|241957291|ref|XP_002421365.1| ribonuclease large subunit, putative [Candida dubliniensis CD36]
gi|223644709|emb|CAX40699.1| ribonuclease large subunit, putative [Candida dubliniensis CD36]
Length = 366
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 109/168 (64%), Gaps = 10/168 (5%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT-LNFADSKTLKEEKREELFEDLK 70
+ P ++G+DEAGRGPVLG MVYG Y S+ L FADSK L + KREELF+ ++
Sbjct: 87 TEPIVLGVDEAGRGPVLGAMVYGIAYSLESFSSKLQKEYGFADSKVLTDVKREELFKQIE 146
Query: 71 -----VNDSVGWAVDIIDPRELSAKMLN----KNKINLNEISHDSAIGLITRVLNIGILL 121
++ +GWA + R++S+ ML K NLNE +HD+ I LI +VL G+ +
Sbjct: 147 DPEHELHKHIGWATTTMTARDISSGMLQSVNGKGAYNLNEQAHDTTIDLIKQVLAKGVKI 206
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+++++DTVG YQAKL + FP I V+KKADS+YP+VS AS+VAK
Sbjct: 207 SKIFVDTVGPPVTYQAKLKRFFPEIDVTVTKKADSIYPIVSTASVVAK 254
>gi|402591687|gb|EJW85616.1| ribonuclease HII [Wuchereria bancrofti]
Length = 304
Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 106/162 (65%), Gaps = 3/162 (1%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
+S PC +GIDEAGRGPVLGPMVY C + + L + DSK L E KREE+FE +K
Sbjct: 26 SSMPCTIGIDEAGRGPVLGPMVYACAVTLVNNENMLTRMGIDDSKVLTEAKREEIFERMK 85
Query: 71 ---VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD 127
+++ G+A I + +SA ML + K +LN++SHD A L+ + I + EVY+D
Sbjct: 86 GSNMSEVFGYACRSISAQMISAAMLRRTKYSLNKLSHDCATELLKLAVENNINVVEVYVD 145
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
TVG YQA L ++FP ++ +VS+KAD+ +P+VS ASI+AK
Sbjct: 146 TVGPKGPYQAMLHKKFPDMQIIVSEKADAKFPIVSAASIIAK 187
>gi|403176171|ref|XP_003888919.1| hypothetical protein, variant, partial [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375172134|gb|EHS64560.1| hypothetical protein, variant, partial [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 320
Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 101/162 (62%), Gaps = 8/162 (4%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSY-QQTLATLNFADSKTLKEEKREELFE------- 67
IMGIDEAGRGPVLGPMVYG +C ++ + L L FADSKTL +REEL E
Sbjct: 69 IMGIDEAGRGPVLGPMVYGAAFCTQAFAEDKLLDLGFADSKTLTHRRREELLEMIVHPPA 128
Query: 68 DLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD 127
D +N+ V W V ++ P ++S M ++ NLN + D+ +I L++ L +Y+D
Sbjct: 129 DQPLNERVEWNVKVLTPADISQGMNRRSPYNLNAQAFDATCEIIQHALDLQYNLQHIYVD 188
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
T+G + +Q KL Q FP IKF V KADS+YP+V AS+VAK
Sbjct: 189 TLGPPKTHQMKLEQSFPGIKFTVCSKADSIYPIVGAASVVAK 230
>gi|331234733|ref|XP_003330025.1| hypothetical protein PGTG_10935 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309309015|gb|EFP85606.1| hypothetical protein PGTG_10935 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 349
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 101/162 (62%), Gaps = 8/162 (4%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSY-QQTLATLNFADSKTLKEEKREELFE------- 67
IMGIDEAGRGPVLGPMVYG +C ++ + L L FADSKTL +REEL E
Sbjct: 69 IMGIDEAGRGPVLGPMVYGAAFCTQAFAEDKLLDLGFADSKTLTHRRREELLEMIVHPPA 128
Query: 68 DLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD 127
D +N+ V W V ++ P ++S M ++ NLN + D+ +I L++ L +Y+D
Sbjct: 129 DQPLNERVEWNVKVLTPADISQGMNRRSPYNLNAQAFDATCEIIQHALDLQYNLQHIYVD 188
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
T+G + +Q KL Q FP IKF V KADS+YP+V AS+VAK
Sbjct: 189 TLGPPKTHQMKLEQSFPGIKFTVCSKADSIYPIVGAASVVAK 230
>gi|403176173|ref|XP_003334882.2| hypothetical protein PGTG_16050 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375172135|gb|EFP90463.2| hypothetical protein PGTG_16050 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 349
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 101/162 (62%), Gaps = 8/162 (4%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSY-QQTLATLNFADSKTLKEEKREELFE------- 67
IMGIDEAGRGPVLGPMVYG +C ++ + L L FADSKTL +REEL E
Sbjct: 69 IMGIDEAGRGPVLGPMVYGAAFCTQAFAEDKLLDLGFADSKTLTHRRREELLEMIVHPPA 128
Query: 68 DLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD 127
D +N+ V W V ++ P ++S M ++ NLN + D+ +I L++ L +Y+D
Sbjct: 129 DQPLNERVEWNVKVLTPADISQGMNRRSPYNLNAQAFDATCEIIQHALDLQYNLQHIYVD 188
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
T+G + +Q KL Q FP IKF V KADS+YP+V AS+VAK
Sbjct: 189 TLGPPKTHQMKLEQSFPGIKFTVCSKADSIYPIVGAASVVAK 230
>gi|399218230|emb|CCF75117.1| unnamed protein product [Babesia microti strain RI]
Length = 277
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 102/155 (65%), Gaps = 2/155 (1%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT-LNFADSKTLKEEKREELFEDL-KVNDS 74
+GIDEAGRGPVLGP+VYG +C + L + DSK L EE RE F+ L VN
Sbjct: 31 IGIDEAGRGPVLGPLVYGGFFCSNDVENELKMDIKVDDSKKLSEESREAKFKLLTNVNKP 90
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
G+ +I P+ +S ML + K NLN+ISHDSA+ +I V++IG L VY+D VG E
Sbjct: 91 FGFVAQLITPQHISTAMLREQKYNLNQISHDSALNIIRHVISIGYKLKSVYIDAVGPTEA 150
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
Y+ K+ FP++K +++++ADS YP+VS ASI+AK
Sbjct: 151 YKMKVKANFPNLKVIIAERADSTYPLVSAASIIAK 185
>gi|328849346|gb|EGF98528.1| hypothetical protein MELLADRAFT_46031 [Melampsora larici-populina
98AG31]
Length = 279
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 100/154 (64%), Gaps = 1/154 (0%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVNDSV 75
MGIDEAGRGPVLGPMVY +CP + + L +L FADSKTL +KR LFE + + + +
Sbjct: 1 MGIDEAGRGPVLGPMVYAASFCPVDFSEELKSLGFADSKTLTHQKRCNLFESIVQSSGKI 60
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W V ++ P ++S M ++ NLN + D+ + +I L+ +L +Y+DT+G + +
Sbjct: 61 QWNVKVMSPSDISMGMSRRSPYNLNAQAFDATVQIIQAALDHQYILQHIYVDTLGPPKTH 120
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
Q L + FP++ F V KADS+YP+VS ASIVAK
Sbjct: 121 QLNLQKAFPNLHFTVCSKADSIYPIVSAASIVAK 154
>gi|348677951|gb|EGZ17768.1| hypothetical protein PHYSODRAFT_545238 [Phytophthora sojae]
Length = 809
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 103/155 (66%), Gaps = 2/155 (1%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++GIDEAGRGPV+GPMVYG Y P + ++ L F DSK L E R +LFE ++ + +
Sbjct: 1 MLGIDEAGRGPVMGPMVYGAAYWPVADNDAMSALGFDDSKALSAESRAQLFEKMQSTEGL 60
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
GW V +I E+S KM + NLNE+S D+AI LI V G ++ +V++DTVGD Y
Sbjct: 61 GWIVRLISAAEISDKM-QRQTSNLNEMSRDAAIQLINEVQKKGAVVKKVFVDTVGDPRWY 119
Query: 136 QAKLSQRF-PSIKFVVSKKADSLYPVVSGASIVAK 169
Q+ L++ F +I+F V KKADSL+ VVS ASI AK
Sbjct: 120 QSFLTKHFNGTIEFRVEKKADSLFKVVSAASIAAK 154
>gi|170590300|ref|XP_001899910.1| ribonuclease HI large subunit [Brugia malayi]
gi|158592542|gb|EDP31140.1| ribonuclease HI large subunit, putative [Brugia malayi]
Length = 282
Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 109/162 (67%), Gaps = 3/162 (1%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
+S PC +GIDEAGRGPVLGPMVY C + + L + DSK L E KREE+FE +K
Sbjct: 26 SSMPCAIGIDEAGRGPVLGPMVYTCAVTLVNNENMLTKIGVDDSKVLTEAKREEIFERMK 85
Query: 71 ---VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD 127
+++ G+A + + +SA ML + K +LN++SHD AI L+ ++ I + +VY+D
Sbjct: 86 GSNMSEIFGYACRSVSAQMISAAMLGRTKYSLNKLSHDCAIELLKLAVDNNINVVDVYVD 145
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
TVG + YQA L ++FP ++ +VS+KAD+ +P+VS AS++AK
Sbjct: 146 TVGPKDPYQAMLHKKFPDMQIIVSEKADAKFPIVSAASVIAK 187
>gi|429328791|gb|AFZ80551.1| ribonuclease H1 large subunit, putative [Babesia equi]
Length = 288
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/170 (47%), Positives = 104/170 (61%), Gaps = 5/170 (2%)
Query: 4 EAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL---ATLNFADSKTLKEE 60
+++LP P +GIDEAGRGPVLG MV+G +CP + + DSK L E
Sbjct: 14 KSSLPS-KETPVALGIDEAGRGPVLGAMVFGGFFCPIGAESEAILKGDIKVDDSKKLNEL 72
Query: 61 KREELFEDLKVND-SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGI 119
RE F L G D++ P+ +S KML + K NLNE+SHD+ I +I V++ G
Sbjct: 73 AREYKFRQLHDETLPFGLIADVVTPQYISYKMLQRTKYNLNEMSHDTEISIIRHVISAGY 132
Query: 120 LLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
L E+Y+DTVG KY+AKL FP+I V+KKADSL+PVVS ASIVAK
Sbjct: 133 NLKEIYVDTVGVESKYEAKLKNLFPNIHIKVAKKADSLFPVVSAASIVAK 182
>gi|156082533|ref|XP_001608751.1| ribonuclease H [Babesia bovis T2Bo]
gi|154796000|gb|EDO05183.1| ribonuclease H, putative [Babesia bovis]
Length = 264
Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/157 (51%), Positives = 101/157 (64%), Gaps = 4/157 (2%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCS--YQQTLA-TLNFADSKTLKEEKREELFEDLKVND 73
+GIDEAGRGPVLGPMVYG CP Y++ L + DSK L R+ F L +
Sbjct: 5 LGIDEAGRGPVLGPMVYGSFVCPIGDEYRRMLKDNIGVDDSKKLTASLRDSKFRALNGPE 64
Query: 74 S-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ ++I PR +S KML + NLN ISHDSAI LI ++ G +TEVY+D VG A
Sbjct: 65 TPFAMCAEVITPRYISYKMLQREAYNLNNISHDSAIALIRYYISQGFNITEVYVDAVGPA 124
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KY+A L+Q FP IK VV+ KADS++PVVS ASIVAK
Sbjct: 125 AKYEAMLTQLFPKIKCVVANKADSIFPVVSAASIVAK 161
>gi|408388455|gb|EKJ68139.1| hypothetical protein FPSE_11606 [Fusarium pseudograminearum CS3096]
Length = 338
Score = 146 bits (368), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 103/166 (62%), Gaps = 7/166 (4%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFED 68
++ PC +G+DEAGRGPVLGPMVYG ++ P S +L T +F DSK LK R +L
Sbjct: 56 SATPCCLGVDEAGRGPVLGPMVYGVVFLPISLSDSLLRETHHFDDSKVLKPAVRSDLMRT 115
Query: 69 L-----KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
L + +S GWA + R++ A M N NLN + D+ + LI V G+ + E
Sbjct: 116 LCTPGSDLYESCGWATASLSARDIGANMYRPNAYNLNAQAMDATVDLIKAVYAAGVNVQE 175
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+++DT+G YQAKL + FP++K +V+KKADSLYP VS AS+ AK
Sbjct: 176 IFVDTIGQPAAYQAKLQRIFPTVKIIVAKKADSLYPCVSAASVCAK 221
>gi|405122261|gb|AFR97028.1| ribonuclease HI large subunit [Cryptococcus neoformans var. grubii
H99]
Length = 326
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 104/172 (60%), Gaps = 18/172 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
IMGIDEAGRGPVLGPMVY YCP S++ L ++ F DSK L E R+ L++ V+ +
Sbjct: 38 IMGIDEAGRGPVLGPMVYAAAYCPLSFKSILESIGFDDSKALSAETRQTLWKSFDVHPPL 97
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV----------- 124
++ + P+++S+ ML K INLN + D+ + LI LN GI +TE
Sbjct: 98 CYSSSTLSPQDISSNMLRKVPINLNRQAEDATVDLIQTALNRGINVTEASFSCSLEASCW 157
Query: 125 -------YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
Y+D +G A ++QA+L+ FP+IKF V KADSL+ +V ASIVAK
Sbjct: 158 LTISLKCYVDALGPAPQWQARLTAIFPTIKFTVCPKADSLFKIVGAASIVAK 209
>gi|378734851|gb|EHY61310.1| ribonuclease H2 subunit A [Exophiala dermatitidis NIH/UT8656]
Length = 340
Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 105/167 (62%), Gaps = 8/167 (4%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFE- 67
+ PC++G+DEAGRGPV+GPMVYG Y P QQ+L +F DSK L R L +
Sbjct: 50 SGTPCVLGVDEAGRGPVIGPMVYGVYYLPVELQQSLLATAYHFDDSKVLTPAFRANLMKA 109
Query: 68 ----DLKVNDSVGWAVDIIDPRELSAKML-NKNKINLNEISHDSAIGLITRVLNIGILLT 122
+ + S GWA+ + +++ A ML N NLN + D+ + LI VL+ G+ +T
Sbjct: 110 VCTAETDLFKSSGWAIKSLSAQDIGAGMLKNGGCYNLNAQAMDATVELIRGVLDRGVNVT 169
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E+Y+DT+G E YQ +LSQ FP+IK V KKADSL+P VS AS+VAK
Sbjct: 170 EIYVDTIGKPEVYQRRLSQIFPTIKITVEKKADSLFPCVSAASVVAK 216
>gi|353241100|emb|CCA72936.1| related to 35 kDa ribonuclease H [Piriformospora indica DSM 11827]
Length = 379
Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 106/163 (65%), Gaps = 4/163 (2%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSY-QQTLATLNFADSKTLKEEKREELFEDL 69
A P +G+DEAGRGP LGP+VYG +CP ++ +LA + F DSKTL E R EL + L
Sbjct: 93 AVGPYAVGVDEAGRGPALGPLVYGMAFCPVAFVDGSLAEMGFDDSKTLTHETRVELLKAL 152
Query: 70 KVNDS-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN--IGILLTEVYL 126
+ + +GWAV +I P+ +S+ ML + +NLN S ++ I L+ +L+ + ++EVY+
Sbjct: 153 SEDTTNMGWAVSVISPQAVSSGMLRRPPVNLNTQSQNATIALLQSLLSEPYALDISEVYV 212
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
D +G AEKYQA L RF ++K V KADSLY +V AS+ AK
Sbjct: 213 DALGPAEKYQAYLQSRFRTLKITVRNKADSLYKIVGAASVAAK 255
>gi|254576869|ref|XP_002494421.1| ZYRO0A01100p [Zygosaccharomyces rouxii]
gi|238937310|emb|CAR25488.1| ZYRO0A01100p [Zygosaccharomyces rouxii]
Length = 309
Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 86/167 (51%), Positives = 104/167 (62%), Gaps = 14/167 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLN--FADSKTLKEEKREELFEDLKVND 73
I+G+DEAGRGPVLGPMVYG YC +Q + N F DSK L + +R LF + +
Sbjct: 43 ILGVDEAGRGPVLGPMVYGISYCTKQFQDEILKPNYGFDDSKKLSDLERRRLFSKIYGEN 102
Query: 74 -------SVGWAVDIIDPRELSAKML----NKNKINLNEISHDSAIGLITRVLNIGILLT 122
+VG+AV I P ++S+ ML N N NLNE +HD I LI VL G+ L
Sbjct: 103 GEVAEIANVGYAVTAITPADISSGMLRYPANAN-YNLNEQAHDVTIALIEGVLQRGVKLH 161
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
VY+DTVG YQ KL Q+FP IKF V+KKADSLY VVS ASIVAK
Sbjct: 162 HVYVDTVGPPASYQKKLEQKFPHIKFTVAKKADSLYCVVSVASIVAK 208
>gi|46107902|ref|XP_381010.1| hypothetical protein FG00834.1 [Gibberella zeae PH-1]
Length = 338
Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 102/166 (61%), Gaps = 7/166 (4%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFED 68
++ PC +G+DEAGRGPVLGPMVYG + P S +L T +F DSK LK R +L
Sbjct: 56 SATPCCLGVDEAGRGPVLGPMVYGVFFLPISLSDSLLRETHHFDDSKVLKPAVRSDLMRI 115
Query: 69 L-----KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
L + +S GWA + R++ A M N NLN + D+ + LI V G+ + E
Sbjct: 116 LCTPGSDLYESCGWATASLSARDIGANMYRPNAYNLNAQAMDATVDLIKAVYAAGVNVQE 175
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+++DT+G YQAKL + FP++K +V+KKADSLYP VS AS+ AK
Sbjct: 176 IFVDTIGQPAAYQAKLQRIFPTVKIIVAKKADSLYPCVSAASVCAK 221
>gi|330925767|ref|XP_003301184.1| hypothetical protein PTT_12627 [Pyrenophora teres f. teres 0-1]
gi|311324289|gb|EFQ90711.1| hypothetical protein PTT_12627 [Pyrenophora teres f. teres 0-1]
Length = 332
Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 107/174 (61%), Gaps = 7/174 (4%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFEDL 69
S ++G+DEAGRGPVLGPMVY Y P +L T +F DSK L E R L L
Sbjct: 47 SGEVVLGVDEAGRGPVLGPMVYALFYLPTELHHSLLADTHHFDDSKVLTPEVRSNLMRKL 106
Query: 70 -----KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV 124
+ D+ GWA ++ +++SA ML+ + NLN + D+ I LI VL G+ +TE+
Sbjct: 107 CTKGSDLYDAGGWATRLLSAQDISAHMLSPSVYNLNAQAMDATIDLIKGVLAQGVNVTEI 166
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMDI 178
Y+DT+G E YQ KL + +P+I+ V+KKADSLYPVVS AS+ AK + +D+
Sbjct: 167 YIDTIGKPEIYQRKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRDAALDV 220
>gi|149235450|ref|XP_001523603.1| ribonuclease HI large subunit [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452582|gb|EDK46838.1| ribonuclease HI large subunit [Lodderomyces elongisporus NRRL
YB-4239]
Length = 414
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/169 (47%), Positives = 106/169 (62%), Gaps = 13/169 (7%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA-TLNFADSKTLKEEKREELF---EDL 69
P +G+DEAGRGPVLGPMVYG Y S+ + L FADSK L +KRE LF ED
Sbjct: 133 PVELGVDEAGRGPVLGPMVYGIAYSLLSFLKCLQKQYGFADSKQLTGDKRELLFKMMEDT 192
Query: 70 KVND----SVGWAVDIIDPRELSAKML-----NKNKINLNEISHDSAIGLITRVLNIGIL 120
+ + VGWA + +++S ML K NLNE +HD+ I LI +L+ G+
Sbjct: 193 HIENGLSKHVGWATTTMTAKDISLGMLRLVSNGKGVYNLNEQAHDATIELIRLILSKGVN 252
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+T +Y+DTVG YQAKL + FP+I V+KKADS+YP+VS AS+VAK
Sbjct: 253 ITAIYVDTVGPPATYQAKLKKLFPTIDITVTKKADSIYPIVSTASVVAK 301
>gi|407917906|gb|EKG11206.1| Ribonuclease HII/HIII [Macrophomina phaseolina MS6]
Length = 332
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 107/175 (61%), Gaps = 8/175 (4%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFEDL 69
+ C++G+DEAGRGPVLGPMVY LY P S ++L T +F DSK L R +L E L
Sbjct: 52 TTECVLGVDEAGRGPVLGPMVYALLYLPLSAHRSLLAETHHFDDSKVLTPAVRSDLMEKL 111
Query: 70 -----KVNDSVGWAVDIIDPRELSAKMLNKN-KINLNEISHDSAIGLITRVLNIGILLTE 123
+ S GWA ++ ++SA ML N NLN + D+ I LI RV +G+ + E
Sbjct: 112 CTPGTDLYKSCGWATKVMSALDISAGMLKANGTYNLNAQAMDATIELIKRVFAMGVNVKE 171
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMDI 178
+Y+DT+G YQ KL + FP+++ V+KKADSLYP VS AS+ AK + +D+
Sbjct: 172 IYIDTIGSPAVYQKKLERIFPTVQITVAKKADSLYPCVSAASVCAKVTRDAALDV 226
>gi|189195170|ref|XP_001933923.1| ribonuclease HI large subunit [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187979802|gb|EDU46428.1| ribonuclease HI large subunit [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 342
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 107/174 (61%), Gaps = 7/174 (4%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFEDL 69
S ++G+DEAGRGPVLGPMVY Y P +L T +F DSK L E R L L
Sbjct: 56 SGEVVLGVDEAGRGPVLGPMVYALFYLPIELHHSLLADTHHFDDSKVLTPEVRSNLMRKL 115
Query: 70 -----KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV 124
+ D+ GWA ++ +++SA ML+ + NLN + D+ I LI VL G+ +TE+
Sbjct: 116 CTKGSDLYDAGGWATRLLSAQDISAHMLSPSVYNLNAQAMDATIDLIKGVLAQGVNVTEI 175
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMDI 178
Y+DT+G E YQ KL + +P+I+ V+KKADSLYPVVS AS+ AK + +D+
Sbjct: 176 YIDTIGKPEIYQRKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRDAALDV 229
>gi|312067297|ref|XP_003136676.1| ribonuclease HI large subunit [Loa loa]
Length = 303
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 108/162 (66%), Gaps = 3/162 (1%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
+S PC++GIDEAGRGPVLGPMVY C + + L + DSK L E KRE++FE ++
Sbjct: 26 SSMPCVVGIDEAGRGPVLGPMVYACAVTLVNNENILLEMGVDDSKVLTEAKREKIFERME 85
Query: 71 ---VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD 127
+++ G+A I + +SA ML + K +LN++SHD A L+ ++ I + EVY+D
Sbjct: 86 GDNMSELFGYAHCSISAQMISAAMLGRTKCSLNKLSHDCATELLKLAIDNNINVVEVYVD 145
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
TVG YQA L ++FP ++ +VS+KAD+ +P+VS ASIVAK
Sbjct: 146 TVGPKGPYQAMLHKKFPDMQIIVSEKADAKFPIVSAASIVAK 187
>gi|393910380|gb|EFO27394.2| ribonuclease HI large subunit [Loa loa]
Length = 305
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 108/162 (66%), Gaps = 3/162 (1%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
+S PC++GIDEAGRGPVLGPMVY C + + L + DSK L E KRE++FE ++
Sbjct: 26 SSMPCVVGIDEAGRGPVLGPMVYACAVTLVNNENILLEMGVDDSKVLTEAKREKIFERME 85
Query: 71 ---VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD 127
+++ G+A I + +SA ML + K +LN++SHD A L+ ++ I + EVY+D
Sbjct: 86 GDNMSELFGYAHCSISAQMISAAMLGRTKCSLNKLSHDCATELLKLAIDNNINVVEVYVD 145
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
TVG YQA L ++FP ++ +VS+KAD+ +P+VS ASIVAK
Sbjct: 146 TVGPKGPYQAMLHKKFPDMQIIVSEKADAKFPIVSAASIVAK 187
>gi|406695841|gb|EKC99140.1| hypothetical protein A1Q2_06544 [Trichosporon asahii var. asahii
CBS 8904]
Length = 300
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 106/168 (63%), Gaps = 13/168 (7%)
Query: 2 GSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEK 61
GS+A W IMGIDEAGRGPVLGPMVY C +CP S++ TL L F +
Sbjct: 30 GSDANKGGW-----IMGIDEAGRGPVLGPMVYACAFCPMSFKPTLEGLGF--------DV 76
Query: 62 REELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILL 121
R+ L+E V+ + ++ + P+ +SA ML K INLN+ + D+ +GLI L+ GI +
Sbjct: 77 RQSLWEAFDVHPELCYSSSTLAPQAISAAMLRKVPINLNQQAQDATMGLIRAALDRGINV 136
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E ++D +G ++ +Q KLS FP+IKF+V KADSL+ +V ASIVAK
Sbjct: 137 QECFVDALGPSQVWQDKLSAEFPTIKFLVCPKADSLFKIVGAASIVAK 184
>gi|398406781|ref|XP_003854856.1| hypothetical protein MYCGRDRAFT_68089 [Zymoseptoria tritici IPO323]
gi|339474740|gb|EGP89832.1| hypothetical protein MYCGRDRAFT_68089 [Zymoseptoria tritici IPO323]
Length = 331
Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 107/172 (62%), Gaps = 8/172 (4%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFE----- 67
C++G+DEAGRGPVLGPMVYG Y P + ++L T F DSK L R EL E
Sbjct: 54 CVLGVDEAGRGPVLGPMVYGLYYLPLAIHRSLLADTHRFDDSKVLTPAFRSELMERICTP 113
Query: 68 DLKVNDSVGWAVDIIDPRELSAKMLNKN-KINLNEISHDSAIGLITRVLNIGILLTEVYL 126
D ++++ GWA ++ +++S+ M+ N NLN + D+ I LI VL+ G+ + EVY+
Sbjct: 114 DTDLHENSGWATRLMSAQDISSAMMRPNGTYNLNAQAMDATIDLIQEVLDSGVNIREVYI 173
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMDI 178
DT+G YQ KL + FP++ V+KKADSLYP VS AS+ AK + +D+
Sbjct: 174 DTIGQPAAYQKKLERIFPALDITVAKKADSLYPCVSAASVCAKVTRDAALDV 225
>gi|169596915|ref|XP_001791881.1| hypothetical protein SNOG_01231 [Phaeosphaeria nodorum SN15]
gi|111069760|gb|EAT90880.1| hypothetical protein SNOG_01231 [Phaeosphaeria nodorum SN15]
Length = 345
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 102/161 (63%), Gaps = 7/161 (4%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFEDL---- 69
++G+DEAGRGPVLGPMVY Y P +L T +F DSK L E R +L +
Sbjct: 60 VLGVDEAGRGPVLGPMVYALFYLPVELHHSLLADTHHFDDSKKLTPEVRSDLMRRICTPG 119
Query: 70 -KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
+ ++ GWA + +++SA ML+ N NLN + D+ I LI VL G+ +TE+Y+DT
Sbjct: 120 TDLYEAGGWATRSLSAQDISAHMLSPNVYNLNAQAMDATIDLIKEVLAKGVNVTEIYIDT 179
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+G E YQ KL + +P+I+ V+KKADSLYPVVS AS+ AK
Sbjct: 180 IGRPETYQRKLERIWPTIRITVAKKADSLYPVVSAASVCAK 220
>gi|365987942|ref|XP_003670802.1| hypothetical protein NDAI_0F02410 [Naumovozyma dairenensis CBS 421]
gi|343769573|emb|CCD25559.1| hypothetical protein NDAI_0F02410 [Naumovozyma dairenensis CBS 421]
Length = 299
Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 77/164 (46%), Positives = 103/164 (62%), Gaps = 17/164 (10%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQ--TLATLNFADSKTLKEEKREELF--- 66
++P IMG+DEAGRGPVLGPMVYG YC YQ + F DSK L + R +LF
Sbjct: 43 ASPIIMGVDEAGRGPVLGPMVYGVSYCTEEYQNETIIPNYEFDDSKKLTDPIRRKLFSKM 102
Query: 67 -----EDLKVN----DSVGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRV 114
DL+ + DS+G+A I P ++S+ ML + NLNE +HD + LI V
Sbjct: 103 YRHNSHDLQKDEIELDSIGYATTSITPLDISSGMLKYPPEKVYNLNEQAHDVTMALIQGV 162
Query: 115 LNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLY 158
LN+G+ L+ VY+DTVG ++ YQ KL RFPS++F V+KKADSL+
Sbjct: 163 LNLGVNLSHVYVDTVGPSQTYQKKLQDRFPSVEFTVTKKADSLF 206
>gi|367034558|ref|XP_003666561.1| hypothetical protein MYCTH_2311349 [Myceliophthora thermophila ATCC
42464]
gi|347013834|gb|AEO61316.1| hypothetical protein MYCTH_2311349 [Myceliophthora thermophila ATCC
42464]
Length = 381
Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 98/165 (59%), Gaps = 9/165 (5%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFEDL-- 69
PC +G+DEAGRGPVLGPMVYG Y P L AT +F DSK L R L L
Sbjct: 60 PCALGVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRATHHFDDSKVLTPAVRASLLRTLCT 119
Query: 70 ---KVNDSVGWAVDIIDPRELSAKMLNKN--KINLNEISHDSAIGLITRVLNIGILLTEV 124
++ S GWAV + R++SA ML NLN + D+ + LI +V G+ + E+
Sbjct: 120 PSTDLHASCGWAVTALSARDISAGMLRPGLAAYNLNAQAMDATVELIRQVYARGVNVREI 179
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
Y+DT+G YQAKL + FP+ K V+KKADSLYP VS AS+ AK
Sbjct: 180 YVDTIGQPAAYQAKLERVFPTAKITVAKKADSLYPCVSAASVCAK 224
>gi|452846013|gb|EME47946.1| hypothetical protein DOTSEDRAFT_167397 [Dothistroma septosporum
NZE10]
Length = 332
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 104/172 (60%), Gaps = 8/172 (4%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFEDLKVN 72
C++G+DEAGRGPVLGPMVY Y P + + L T F DSK L R EL E +
Sbjct: 55 CVLGVDEAGRGPVLGPMVYALYYLPLTMHRKLLADTHKFDDSKVLTPAVRSELMEKISTP 114
Query: 73 DS-----VGWAVDIIDPRELSAKMLNKNKI-NLNEISHDSAIGLITRVLNIGILLTEVYL 126
+ GWA + R++S+ M+ + + NLNE + D+ I LI VLN G+ + EVY+
Sbjct: 115 GTDLYTHGGWAARHMSARDISSAMMRPHGMYNLNEQAMDATIDLIQEVLNSGVNIREVYI 174
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMDI 178
DT+G E YQ KL + FP++ V+KKADSLYP VS AS+ AK + +D+
Sbjct: 175 DTIGRPETYQRKLERIFPALSITVAKKADSLYPCVSAASVCAKVTRDAALDV 226
>gi|402076046|gb|EJT71469.1| ribonuclease H2 subunit A [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 373
Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 99/166 (59%), Gaps = 10/166 (6%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFEDL-- 69
PC +G+DEAGRGPVLGPMVYG Y P L T +F DSK LK E R L E L
Sbjct: 74 PCFLGVDEAGRGPVLGPMVYGVFYLPAPLSDPLLRETHHFDDSKVLKPEVRSALMEALCS 133
Query: 70 ---KVNDSVGWAVDIIDPRELSAKML---NKNKINLNEISHDSAIGLITRVLNIGILLTE 123
+ S GWAV + R++ A M+ + NLN + D+ + LI V++ G+ + E
Sbjct: 134 AGSDLYSSCGWAVSALSARDIGANMMRPASAAAYNLNAQAFDATVALIRGVMDRGVNVAE 193
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+Y+DTVG YQ +L + FP+ + V+KKADSLYP VS AS+ AK
Sbjct: 194 IYVDTVGPPATYQKRLERVFPTARVTVAKKADSLYPCVSAASVCAK 239
>gi|452986900|gb|EME86656.1| hypothetical protein MYCFIDRAFT_30484 [Pseudocercospora fijiensis
CIRAD86]
Length = 336
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 103/163 (63%), Gaps = 8/163 (4%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFEDLKVN 72
C++G+DEAGRGPVLGPMVY Y P + ++L T F DSK L R EL E + +
Sbjct: 58 CVLGVDEAGRGPVLGPMVYALYYLPTTLHRSLLADTHKFDDSKVLTPAVRSELMEKICTS 117
Query: 73 DS-----VGWAVDIIDPRELSAKMLNKNKI-NLNEISHDSAIGLITRVLNIGILLTEVYL 126
D+ GWA + +++S+ ML + + NLN + D+ I LI +VL+ G+ + EVY+
Sbjct: 118 DTDLYRNCGWATRSLSAKDISSAMLRPHGVYNLNNQAMDATIDLIQQVLDSGVNIREVYI 177
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
DT+G E YQ KL + FP++ V+KKADSLYP VS AS+ AK
Sbjct: 178 DTIGKPEVYQKKLEKIFPALNITVAKKADSLYPCVSAASVCAK 220
>gi|242807713|ref|XP_002485012.1| ribonuclease HI large subunit [Talaromyces stipitatus ATCC 10500]
gi|218715637|gb|EED15059.1| ribonuclease HI large subunit [Talaromyces stipitatus ATCC 10500]
Length = 386
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 106/165 (64%), Gaps = 10/165 (6%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATL--NFADSKTLKEEKREELFEDL--- 69
C++G+DEAGRGPVLGPMVY Y P +Q+L T +F DSK L R +L + +
Sbjct: 85 CVLGVDEAGRGPVLGPMVYSAFYLPKDLEQSLLTQEHSFDDSKVLTPVVRAQLMQSICTP 144
Query: 70 --KVNDSVGWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVLN-IGILLTEV 124
++DS GWAV ++ R++SA M+ NLN + D+ + +I VLN I +TE+
Sbjct: 145 GQSLHDSCGWAVKLLSARDISAGMMRPGMGIYNLNAQAMDATVEIIRGVLNDKHINVTEI 204
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
Y+DT+G+ YQAKL + FP++ V+KKADSLYP VS AS+VAK
Sbjct: 205 YIDTIGNPATYQAKLQRLFPTLSITVAKKADSLYPCVSAASVVAK 249
>gi|116200221|ref|XP_001225922.1| hypothetical protein CHGG_08266 [Chaetomium globosum CBS 148.51]
gi|88179545|gb|EAQ87013.1| hypothetical protein CHGG_08266 [Chaetomium globosum CBS 148.51]
Length = 344
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 98/165 (59%), Gaps = 9/165 (5%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFEDL-- 69
PC +G+DEAGRGPVLGPMVYG Y P L T +F DSK L R L E L
Sbjct: 59 PCALGVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRTTHHFDDSKVLTPAVRASLMETLCT 118
Query: 70 ---KVNDSVGWAVDIIDPRELSAKMLNKN--KINLNEISHDSAIGLITRVLNIGILLTEV 124
+ +S GWAVD + R++ A ML NLN + D+ + LI V G+ + E+
Sbjct: 119 PTSDLYESCGWAVDALSARDIGAGMLRPGLGAYNLNAQAMDATVELIKGVYARGVNVREI 178
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
Y+DT+G YQAKL++ FP+ K V+KKADSLYP VS AS+ AK
Sbjct: 179 YVDTIGQPAAYQAKLARVFPAAKVTVAKKADSLYPSVSAASVCAK 223
>gi|410083421|ref|XP_003959288.1| hypothetical protein KAFR_0J00850 [Kazachstania africana CBS 2517]
gi|372465879|emb|CCF60153.1| hypothetical protein KAFR_0J00850 [Kazachstania africana CBS 2517]
Length = 312
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 100/159 (62%), Gaps = 10/159 (6%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQT--LATLNFADSKTLKEEKREELF 66
K +++P I+G+DEAGRGPV+GPMVYG YC +Q+ + +F DSK L +E R +LF
Sbjct: 27 KSSNSPVILGVDEAGRGPVVGPMVYGIAYCTRDFQEQVLIPDYDFDDSKKLTDEVRRKLF 86
Query: 67 ----EDLKVNDSVGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGI 119
ED ++ND VG+A I P ++S M NLNE +HD + LI V+N G+
Sbjct: 87 RLIYEDRQIND-VGYATTCISPCDISNGMFRFPPSKNYNLNEQAHDVTMDLIQGVINQGV 145
Query: 120 LLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLY 158
+ VY+DTVG YQ KL RFP IKF V+KKADSLY
Sbjct: 146 TIEHVYVDTVGPPNTYQKKLETRFPGIKFTVAKKADSLY 184
>gi|444320573|ref|XP_004180943.1| hypothetical protein TBLA_0E03700 [Tetrapisispora blattae CBS 6284]
gi|387513986|emb|CCH61424.1| hypothetical protein TBLA_0E03700 [Tetrapisispora blattae CBS 6284]
Length = 312
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 97/160 (60%), Gaps = 13/160 (8%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLN--FADSKTLKEEKREELFEDL 69
++P I+G+DEAGRGPVLGPMVYG YC +Y N F DSK L + R++LF +
Sbjct: 36 TSPIILGVDEAGRGPVLGPMVYGIAYCTTNYMNEFIIPNYEFDDSKKLTDTIRKKLFSKM 95
Query: 70 KVND--------SVGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIG 118
ND +G+A I P ++S+ ML NLNE +HD I LI VL+
Sbjct: 96 YSNDPSIDPEINQIGYATTAITPNDISSGMLRFPPSKNYNLNEQAHDVTIALIQGVLDQN 155
Query: 119 ILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLY 158
+ L+ VY+DTVG + YQ KL RFP++KF V+KKADSLY
Sbjct: 156 VQLSHVYVDTVGPPQSYQKKLETRFPNVKFTVTKKADSLY 195
>gi|392578857|gb|EIW71984.1| hypothetical protein TREMEDRAFT_26073 [Tremella mesenterica DSM
1558]
Length = 272
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 100/154 (64%), Gaps = 1/154 (0%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
IMGIDEAGRG + GPMVY CP ++ TL + F DSK L E R+ L++ + + +
Sbjct: 34 IMGIDEAGRGHI-GPMVYAAALCPIKFKSTLEEMGFDDSKALSPETRQNLWDKFEDHPEL 92
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
++ + P+ +SA ML + +NLN + D+ +GL+ L+ GI +TE Y+D +G A ++
Sbjct: 93 CYSSATLSPQAISANMLRRIPVNLNRQAEDATVGLVQAALDRGIKVTECYVDALGPAPQW 152
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
QA+LS FP+I F V KADSL+ +VS ASI+AK
Sbjct: 153 QARLSSLFPTISFTVCPKADSLFKIVSAASIIAK 186
>gi|358396936|gb|EHK46311.1| hypothetical protein TRIATDRAFT_6664, partial [Trichoderma
atroviride IMI 206040]
Length = 334
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 98/165 (59%), Gaps = 7/165 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFEDL-- 69
PC++G+DEAGRGPVLGPMVYG + P L T +F DSK L R +L E L
Sbjct: 47 PCVLGVDEAGRGPVLGPMVYGIFFLPADISDPLLRDTHHFDDSKVLSAAVRSQLMETLCT 106
Query: 70 ---KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL 126
+++S GWA + R++ A ML NLN + D+ + LI V G+ + E+Y+
Sbjct: 107 PGSDLHESCGWATTALSARDIGANMLRPVPYNLNAQAMDATMDLIRAVYAKGVNIKEIYV 166
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRS 171
DT+G YQAKL + FP+ K V+KKADSLY VS AS+ AK S
Sbjct: 167 DTIGPPASYQAKLQRVFPTAKVTVAKKADSLYACVSAASVCAKVS 211
>gi|449300186|gb|EMC96198.1| hypothetical protein BAUCODRAFT_122230 [Baudoinia compniacensis
UAMH 10762]
Length = 335
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/182 (42%), Positives = 106/182 (58%), Gaps = 8/182 (4%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKR 62
AAL S C++G+DEAGRGPVLGPMVY Y P + L T +F DSK L R
Sbjct: 48 AALRADMSTACVLGVDEAGRGPVLGPMVYALYYLPLPMHRLLLAETHHFDDSKALTPAVR 107
Query: 63 EELFEDL-----KVNDSVGWAVDIIDPRELSAKMLNKN-KINLNEISHDSAIGLITRVLN 116
EL E + + GWA + R++SA L N NLN + D+ + LI +VL+
Sbjct: 108 SELMEKVCSPQTDLFQHCGWATRSMSARDISAAQLKANGAYNLNAQAMDATVDLIQQVLD 167
Query: 117 IGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
+G+ + EVY+DT+G YQ +L + FPS+ V+KKADSLYP VS AS+ AK + +
Sbjct: 168 LGVNVCEVYIDTIGPPATYQKRLERIFPSLSITVAKKADSLYPCVSAASVCAKVTRDASL 227
Query: 177 DI 178
D+
Sbjct: 228 DV 229
>gi|296422347|ref|XP_002840722.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636945|emb|CAZ84913.1| unnamed protein product [Tuber melanosporum]
Length = 336
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 99/164 (60%), Gaps = 9/164 (5%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+G+DEAGRGPVLGPMVY YC S L F DSK L R L + L D+
Sbjct: 63 VILGVDEAGRGPVLGPMVYAVAYCLKSDNPMLREHKFDDSKKLTHSLRTHLLQTLTTPDT 122
Query: 75 -----VGWAVDIIDPRELSAKML----NKNKINLNEISHDSAIGLITRVLNIGILLTEVY 125
+GW+ + PR++S+ ML + + NLN + D+ LIT VL+ G+ + E+Y
Sbjct: 123 TLHRNLGWSTISLSPRDISSGMLRSTTSSSTYNLNAQAFDATTTLITAVLSSGVNIREIY 182
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+DTVG A YQ++L + FP I VSKKADS+YP+VS AS+ AK
Sbjct: 183 VDTVGTASTYQSRLQKLFPHIAVTVSKKADSIYPIVSAASVCAK 226
>gi|241154557|ref|XP_002407329.1| ribonuclease HI large subunit, putative [Ixodes scapularis]
gi|215494090|gb|EEC03731.1| ribonuclease HI large subunit, putative [Ixodes scapularis]
Length = 306
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 93/126 (73%), Gaps = 2/126 (1%)
Query: 4 EAALPKWA-SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKR 62
++A+P A S PC++G+DEAGRGPVLGPMVYG YCP +++ L L FADSKTL EEKR
Sbjct: 17 KSAVPDVAKSYPCMLGVDEAGRGPVLGPMVYGIAYCPVEFEEDLKRLGFADSKTLTEEKR 76
Query: 63 EELFEDL-KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILL 121
EEL + + ++S+GW V++I P + MLN +K +LN ISHDSAIGLI + L+ G+ +
Sbjct: 77 EELVGVMEQRSESLGWMVEVISPTVICNHMLNMSKYSLNAISHDSAIGLIKQALDDGVCV 136
Query: 122 TEVYLD 127
TEV L+
Sbjct: 137 TEVKLE 142
>gi|212538023|ref|XP_002149167.1| ribonuclease HI large subunit [Talaromyces marneffei ATCC 18224]
gi|210068909|gb|EEA23000.1| ribonuclease HI large subunit [Talaromyces marneffei ATCC 18224]
Length = 368
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 105/165 (63%), Gaps = 10/165 (6%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL--- 69
C++G+DEAGRGPVLGPMVY Y P ++ L T +F DSK L R L + +
Sbjct: 71 CVLGVDEAGRGPVLGPMVYSAFYLPKHLERPLLTEEYSFDDSKVLTPVVRARLMQSICTP 130
Query: 70 --KVNDSVGWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVLN-IGILLTEV 124
++DS GWAV ++ R++SA M+ + NLN + D+ I +I VLN I +TEV
Sbjct: 131 GASLHDSCGWAVKLLSARDISAGMMRPSTGVYNLNAQAMDATIEIIRGVLNEKHINVTEV 190
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
Y+DT+G+ YQAKL + FP++ V+KKADSLYP VS AS+VAK
Sbjct: 191 YIDTIGNPATYQAKLQRLFPTLSITVAKKADSLYPCVSAASVVAK 235
>gi|393241381|gb|EJD48903.1| ribonuclease H-like protein [Auricularia delicata TFB-10046 SS5]
Length = 318
Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 98/160 (61%), Gaps = 1/160 (0%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
++ P +G+DEAGRGPV+GP+VYG +CP Y + L L F DSK L E R L L
Sbjct: 31 SAGPYHLGVDEAGRGPVMGPLVYGVAFCPAPYIEKLNELGFDDSKALSAETRTHLLGSLC 90
Query: 71 VNDS-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ + +GWAV ++ P+ +S ML + INLN S ++ I LI VL GI L+ VY+D +
Sbjct: 91 GDPANLGWAVRVVSPQAISRGMLRRPPINLNIQSQEATILLIREVLAKGIQLSHVYVDAL 150
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G ++ YQ LS FP I F V KAD+ + +V AS+ AK
Sbjct: 151 GSSKTYQDYLSSVFPGIAFDVRPKADATFKIVGAASVAAK 190
>gi|358378191|gb|EHK15873.1| hypothetical protein TRIVIDRAFT_39184 [Trichoderma virens Gv29-8]
Length = 335
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 97/163 (59%), Gaps = 7/163 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFEDL-- 69
PC++G+DEAGRGPVLGPMVYG + P L T +F DSK L R +L E L
Sbjct: 48 PCVLGVDEAGRGPVLGPMVYGIFFLPADISDPLLRETHHFDDSKVLSATVRSQLMETLCT 107
Query: 70 ---KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL 126
+++S GWA + R++ A M+ NLN + D+ + LI V G+ + E+Y+
Sbjct: 108 PGSDLHESCGWATTALSARDIGANMMKPVSYNLNAQAMDATMDLIRAVYAKGVNIKEIYV 167
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
DT+G YQAKL + FP+ K V+KKADSLY VS AS+ AK
Sbjct: 168 DTIGPPATYQAKLQRVFPTAKVTVAKKADSLYACVSAASVCAK 210
>gi|440638129|gb|ELR08048.1| hypothetical protein GMDG_02886 [Geomyces destructans 20631-21]
Length = 397
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 97/173 (56%), Gaps = 18/173 (10%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFEDL--- 69
C +G+DEAGRGPVLGPMVYG Y P L T +F DSK L R +L E L
Sbjct: 90 CALGVDEAGRGPVLGPMVYGAFYLPVPLSTPLLSKTHHFDDSKVLTAGFRAQLMETLCTP 149
Query: 70 -------------KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN 116
+ D+ GWAV ++ R +SA M+ NLNE + D+ I LI V
Sbjct: 150 TVPPAPETSPDPSSLYDNCGWAVSVLSARAISANMMRPAMYNLNEQAMDATIHLIKTVYE 209
Query: 117 IGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+G+ + E+Y+DT+G YQ KL + FP+ V+KKADSLYP VS AS+ AK
Sbjct: 210 MGVNVREIYIDTIGQPGPYQKKLERIFPTASITVAKKADSLYPCVSAASVCAK 262
>gi|389624103|ref|XP_003709705.1| ribonuclease H2 subunit A [Magnaporthe oryzae 70-15]
gi|351649234|gb|EHA57093.1| ribonuclease H2 subunit A [Magnaporthe oryzae 70-15]
gi|440466622|gb|ELQ35881.1| ribonuclease H2 subunit A [Magnaporthe oryzae Y34]
gi|440489318|gb|ELQ68978.1| ribonuclease H2 subunit A [Magnaporthe oryzae P131]
Length = 355
Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/171 (43%), Positives = 98/171 (57%), Gaps = 15/171 (8%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFEDL-- 69
PC++G+DEAGRGPVLGPMVYG Y P L T +F DSK L R L E L
Sbjct: 55 PCVLGVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRETHHFDDSKVLTPAVRSSLMESLCT 114
Query: 70 --------KVNDSVGWAVDIIDPRELSAKML---NKNKINLNEISHDSAIGLITRVLNIG 118
+N + GWA+ + R++ A M+ NLN + D+ + LI V++ G
Sbjct: 115 PTLSQSAGSLNSTCGWAISSLSARDIGAGMMRPATSAAYNLNAQALDATVSLIQGVMDRG 174
Query: 119 ILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+ + E+Y+DTVG YQ KL + FP+ K VSKKADSLYP VS AS+ AK
Sbjct: 175 VNVAEIYVDTVGPPAAYQKKLERFFPTAKVTVSKKADSLYPCVSAASVCAK 225
>gi|451994868|gb|EMD87337.1| hypothetical protein COCHEDRAFT_1197453 [Cochliobolus
heterostrophus C5]
Length = 343
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 104/171 (60%), Gaps = 7/171 (4%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFEDL--- 69
++G+DEAGRGPVLGPMVY Y P +L T +F DSK LK + R +L L
Sbjct: 59 VVLGVDEAGRGPVLGPMVYALFYLPIELHHSLLADTHHFDDSKVLKADVRSDLMRTLCTQ 118
Query: 70 --KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD 127
+ + GWA ++ +++SA ML + NLN + D+ I LI VL G+ + E+Y+D
Sbjct: 119 GTDLYKAGGWATRLLSAQDISAHMLQPSVYNLNAQAMDATIDLIKEVLVKGVNVKEIYID 178
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMDI 178
T+G E YQ KL + +P+I V+KKADSLYPVVS AS+ AK + +D+
Sbjct: 179 TIGKPEIYQKKLERIWPTISITVAKKADSLYPVVSAASVCAKVTRDAALDV 229
>gi|401884266|gb|EJT48435.1| hypothetical protein A1Q1_02567 [Trichosporon asahii var. asahii
CBS 2479]
Length = 301
Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 106/169 (62%), Gaps = 14/169 (8%)
Query: 2 GSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEK 61
GS+A W IMGIDEAGRGPVLGPMVY C +CP S++ TL L F +
Sbjct: 30 GSDANKGGW-----IMGIDEAGRGPVLGPMVYACAFCPMSFKPTLEGLGF--------DV 76
Query: 62 REELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILL 121
R+ L+E V+ + ++ + P+ +SA ML K INLN+ + D+ +GLI L+ GI +
Sbjct: 77 RQSLWEAFDVHPELCYSSSTLAPQAISAAMLRKVPINLNQQAQDATMGLIRAALDRGINV 136
Query: 122 TE-VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E ++D +G ++ +Q KLS FP+IKF+V KADSL+ +V ASIVAK
Sbjct: 137 QEQCFVDALGPSQVWQDKLSAEFPTIKFLVCPKADSLFKIVGAASIVAK 185
>gi|327297598|ref|XP_003233493.1| ribonuclease HI large subunit [Trichophyton rubrum CBS 118892]
gi|326464799|gb|EGD90252.1| ribonuclease HI large subunit [Trichophyton rubrum CBS 118892]
Length = 361
Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 103/168 (61%), Gaps = 11/168 (6%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL- 69
PC++GIDEAGRGPVLGPMVY Y P ++L +F DSK L E R L L
Sbjct: 65 TPCVLGIDEAGRGPVLGPMVYSAFYLPVHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLC 124
Query: 70 ----KVNDSVGWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNI-GILL 121
++DS GWAV ++ R++S+ ML + NLN + D+ I +I V+ GI +
Sbjct: 125 TQGHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETHGIDV 184
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
EVY+DT+G E +QA+L + FP +K V+KKADSLYP VS AS+ AK
Sbjct: 185 KEVYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAK 232
>gi|341039044|gb|EGS24036.1| hypothetical protein CTHT_0007470 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 363
Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 102/165 (61%), Gaps = 9/165 (5%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFEDL-- 69
PC++G+DEAGRGPVLGPMVYG + P +L T +F DSK L R L + L
Sbjct: 62 PCVLGVDEAGRGPVLGPMVYGIFFLPLDLSDSLLRDTHHFDDSKVLTPATRSALMQTLCT 121
Query: 70 ---KVNDSVGWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVLNIGILLTEV 124
++ S GWA+ + R++S+ ML + NLN + D+ + LI +V G+ +TE+
Sbjct: 122 EGSDLHTSCGWAITALSARDISSGMLRPSTAGYNLNAQAQDATVALIKKVYASGVNVTEI 181
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
Y+DT+G YQAKL + FP +K V+KKADSLYP VS AS+ AK
Sbjct: 182 YVDTIGHPATYQAKLERVFPGVKITVAKKADSLYPCVSAASVCAK 226
>gi|302510819|ref|XP_003017361.1| hypothetical protein ARB_04241 [Arthroderma benhamiae CBS 112371]
gi|291180932|gb|EFE36716.1| hypothetical protein ARB_04241 [Arthroderma benhamiae CBS 112371]
Length = 361
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 103/168 (61%), Gaps = 11/168 (6%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL- 69
PC++GIDEAGRGPVLGPMVY Y P ++L +F DSK L E R L L
Sbjct: 65 TPCVLGIDEAGRGPVLGPMVYSAFYLPIHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLC 124
Query: 70 ----KVNDSVGWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNI-GILL 121
++DS GWAV ++ R++S+ ML + NLN + D+ I +I V+ GI +
Sbjct: 125 TQSHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQGINV 184
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
EVY+DT+G E +QA+L + FP +K V+KKADSLYP VS AS+ AK
Sbjct: 185 KEVYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAK 232
>gi|156063040|ref|XP_001597442.1| hypothetical protein SS1G_01636 [Sclerotinia sclerotiorum 1980]
gi|154696972|gb|EDN96710.1| hypothetical protein SS1G_01636 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 361
Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 105/177 (59%), Gaps = 10/177 (5%)
Query: 3 SEAALPKWASNP---CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTL 57
++A+ P S P C +GIDEAGRGPVLGPMVYG Y P L T +F DSK L
Sbjct: 52 TDASKPDAPSIPGPACALGIDEAGRGPVLGPMVYGLFYLPLPLSDPLLRNTHHFDDSKVL 111
Query: 58 KEEKREELFEDLKVNDS-----VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLIT 112
R EL + L DS GWAVD++ R++ A M+ NLN + DS I LI
Sbjct: 112 TPTVRSELMKKLCTPDSDLYTQCGWAVDVLSARDIGANMMKPATYNLNAQAMDSTIALIQ 171
Query: 113 RVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
V++ G+ + E+Y+D +G+ YQ KL + FP+ + V+KKADSLYP VS AS+ AK
Sbjct: 172 GVMDKGVNVKEIYIDALGNTVTYQKKLERIFPTAQITVAKKADSLYPCVSAASVCAK 228
>gi|302657829|ref|XP_003020627.1| hypothetical protein TRV_05276 [Trichophyton verrucosum HKI 0517]
gi|291184480|gb|EFE40009.1| hypothetical protein TRV_05276 [Trichophyton verrucosum HKI 0517]
Length = 361
Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 103/168 (61%), Gaps = 11/168 (6%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL- 69
PC++GIDEAGRGPVLGPMVY Y P ++L +F DSK L E R L L
Sbjct: 65 TPCVLGIDEAGRGPVLGPMVYSAFYLPIHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLC 124
Query: 70 ----KVNDSVGWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNI-GILL 121
++DS GWAV ++ R++S+ ML + NLN + D+ I +I V+ GI +
Sbjct: 125 TQGHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQGIDV 184
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
EVY+DT+G E +QA+L + FP +K V+KKADSLYP VS AS+ AK
Sbjct: 185 KEVYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAK 232
>gi|340521578|gb|EGR51812.1| predicted protein [Trichoderma reesei QM6a]
Length = 347
Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 95/163 (58%), Gaps = 7/163 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFEDL-- 69
PC++G+DEAGRGPVLGPMVYG + P L T +F DSK L R +L L
Sbjct: 62 PCVLGVDEAGRGPVLGPMVYGIFFLPADVSDALLRDTHHFDDSKVLSASVRSQLMHTLCT 121
Query: 70 ---KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL 126
++ S GWA + R++ A M+ NLN + D+ I LI V G+ + E+Y+
Sbjct: 122 PGSDLHSSCGWATTALSARDIGANMMRPVSYNLNAQAMDATIDLIRAVYAKGVNVKEIYV 181
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
DT+G YQAKL + FP+ K V+KKADSLY VS AS+ AK
Sbjct: 182 DTIGPPATYQAKLQRVFPTAKVTVAKKADSLYACVSAASVCAK 224
>gi|425774265|gb|EKV12578.1| Ribonuclease [Penicillium digitatum PHI26]
Length = 333
Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 104/168 (61%), Gaps = 10/168 (5%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL 69
S PC++G+DEAGRGPVLGPMVYG Y P +L T +F DSK L RE L L
Sbjct: 49 STPCVLGVDEAGRGPVLGPMVYGAFYLPLDLHHSLLTEKHSFDDSKVLTPAVRENLMHLL 108
Query: 70 KVN-----DSVGWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVL-NIGILL 121
+S G+AV ++ R++S+ M+ NLN + D+ + +I V+ + G+ +
Sbjct: 109 NTPGYPLFESCGYAVKVLSARDISSGMMRSPTAVYNLNAQAMDATVEIIRGVVEDRGVDV 168
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
EVY+DT+G+ YQ KL + FPS+K V+KKADSLYP VS AS+VAK
Sbjct: 169 REVYIDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVVAK 216
>gi|425778544|gb|EKV16668.1| Ribonuclease [Penicillium digitatum Pd1]
Length = 333
Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 104/168 (61%), Gaps = 10/168 (5%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL 69
S PC++G+DEAGRGPVLGPMVYG Y P +L T +F DSK L RE L L
Sbjct: 49 STPCVLGVDEAGRGPVLGPMVYGAFYLPLDLHHSLLTEKHSFDDSKVLTPAVRENLMHLL 108
Query: 70 KVN-----DSVGWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVL-NIGILL 121
+S G+AV ++ R++S+ M+ NLN + D+ + +I V+ + G+ +
Sbjct: 109 NTPGYPLFESCGYAVKVLSARDISSGMMRSPTAVYNLNAQAMDATVEIIRGVVEDRGVDV 168
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
EVY+DT+G+ YQ KL + FPS+K V+KKADSLYP VS AS+VAK
Sbjct: 169 REVYIDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVVAK 216
>gi|451846155|gb|EMD59466.1| hypothetical protein COCSADRAFT_30912 [Cochliobolus sativus ND90Pr]
Length = 343
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 104/171 (60%), Gaps = 7/171 (4%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL--- 69
++G+DEAGRGPVLGPMVY Y P ++L +F DSK LK R +L L
Sbjct: 59 VVLGVDEAGRGPVLGPMVYALFYLPIELHRSLLAEIHHFDDSKVLKANVRSDLMRTLCTQ 118
Query: 70 --KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD 127
+ ++ GWA ++ +++SA ML + NLN + D+ I LI VL G+ + E+Y+D
Sbjct: 119 GTDLYEAGGWATRLLSAQDISAHMLQPSVYNLNAQAMDATIDLIKEVLAKGVNVKEIYID 178
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMDI 178
T+G E YQ KL + +P+I V+KKADSLYPVVS AS+ AK + +D+
Sbjct: 179 TIGKPEIYQKKLERIWPTISITVAKKADSLYPVVSAASVCAKVTRDAALDV 229
>gi|367012081|ref|XP_003680541.1| hypothetical protein TDEL_0C04410 [Torulaspora delbrueckii]
gi|359748200|emb|CCE91330.1| hypothetical protein TDEL_0C04410 [Torulaspora delbrueckii]
Length = 299
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/154 (48%), Positives = 95/154 (61%), Gaps = 7/154 (4%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFA--DSKTLKEEKREELFEDL 69
S+ I+G+DEAGRGPV+GPMVYG +C YQ T+ +A DSK L + R +LF +
Sbjct: 31 SSSVILGVDEAGRGPVMGPMVYGISFCTREYQDTVLIPKYAFDDSKKLTDPVRRDLFSKI 90
Query: 70 KVND--SVGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGILLTEV 124
N+ VG+A I P ++S M NLNE +HD + LI VL+ G+ L V
Sbjct: 91 YNNEITGVGYATTCITPVDISGGMFRFPPSKNYNLNEQAHDVTMKLIQGVLDRGVKLDHV 150
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLY 158
Y+DTVG YQ KL QRFPS+KF V+KKADSLY
Sbjct: 151 YVDTVGQPASYQKKLEQRFPSVKFTVAKKADSLY 184
>gi|406864455|gb|EKD17500.1| ribonuclease HII [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 359
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 101/172 (58%), Gaps = 8/172 (4%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFE----- 67
C +G+DEAGRGPVLGPMVYG Y P L T +F DSK L R L E
Sbjct: 67 CALGVDEAGRGPVLGPMVYGLFYLPIPLSDPLLRDTHHFDDSKVLTPTVRSNLMEKLCSP 126
Query: 68 DLKVNDSVGWAVDIIDPRELSAKMLNKNKI-NLNEISHDSAIGLITRVLNIGILLTEVYL 126
D ++ GWAV+++ R++ A M+ NLN + D+ I LI V G+ + E+++
Sbjct: 127 DTDLHSQCGWAVEVMSARDIGANMMKPAATYNLNAQAMDATIMLIKGVYERGVNVKEIFI 186
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMDI 178
DT+G+ E YQ KL + FP+ K V+KKADSLYP VS AS+ AK + M++
Sbjct: 187 DTIGNPETYQRKLQRIFPTAKVTVAKKADSLYPCVSAASVCAKVTRDAAMEV 238
>gi|397640214|gb|EJK73996.1| hypothetical protein THAOC_04357 [Thalassiosira oceanica]
Length = 391
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 104/163 (63%), Gaps = 5/163 (3%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++GIDEAGRGPVLGPM YGC + S + +F DSK L EKR LF+ ++ + ++
Sbjct: 93 VLGIDEAGRGPVLGPMTYGCAFWHPSSSDIPS--DFNDSKQLSAEKRASLFQTIRTSKNI 150
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
G+ + ++ E+S ML ++ NLN +SHD+A+ +I VLN G+ + Y+DTVG E Y
Sbjct: 151 GFVLRVLHASEISRNMLRRSPYNLNAMSHDAAMEMIRAVLNAGVRIDTAYVDTVGIPEAY 210
Query: 136 QAKLSQRFP--SIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
Q KL + F +I FVV KKAD+ Y S AS+VAK + +RM
Sbjct: 211 QRKLERAFEGHNINFVVEKKADAKYAPCSAASVVAKEAR-DRM 252
>gi|315044861|ref|XP_003171806.1| ribonuclease H2 subunit A [Arthroderma gypseum CBS 118893]
gi|311344149|gb|EFR03352.1| ribonuclease H2 subunit A [Arthroderma gypseum CBS 118893]
Length = 362
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 102/168 (60%), Gaps = 11/168 (6%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL- 69
PC++GIDEAGRGPVLGPMVY Y P +L +F DSK L E R L L
Sbjct: 65 TPCVLGIDEAGRGPVLGPMVYSAFYLPIHLHNSLLADEHHFDDSKVLTPEVRSNLMRSLC 124
Query: 70 ----KVNDSVGWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNI-GILL 121
+++S GWAV ++ R++S+ ML + NLN + D+ I +I V+ GI +
Sbjct: 125 TQGHSLHNSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQGIDV 184
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
EVY+DT+G E +QA+L + FP +K V+KKADSLYP VS AS+ AK
Sbjct: 185 KEVYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAK 232
>gi|400597529|gb|EJP65259.1| ribonuclease HII [Beauveria bassiana ARSEF 2860]
Length = 340
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 99/167 (59%), Gaps = 8/167 (4%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFED 68
++ PC +G+DEAGRGPVLGPMVYG Y P + L + +F DSK L R L E
Sbjct: 53 SATPCCLGVDEAGRGPVLGPMVYGVFYLPIAQSDPLLRSAHHFDDSKVLTAAVRASLMEA 112
Query: 69 L-----KVNDSVGWAVDIIDPRELSAKMLNKNKI-NLNEISHDSAIGLITRVLNIGILLT 122
L ++DS GWA + R++ A ML + NLN + D+ + LI V G+ +
Sbjct: 113 LCRPGSDLHDSCGWATTALSARDIGANMLKPVGVYNLNAQAMDATVDLIKGVYARGVNVQ 172
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E+Y+DT+G YQAKL + FP+ K V+KKADSLY VS AS+ AK
Sbjct: 173 EIYVDTIGPPATYQAKLQRIFPTAKVTVAKKADSLYACVSAASVCAK 219
>gi|326483287|gb|EGE07297.1| ribonuclease HI large subunit [Trichophyton equinum CBS 127.97]
Length = 323
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 102/168 (60%), Gaps = 11/168 (6%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL- 69
PC++GIDEAGRGPVLGPMVY Y P ++L +F DSK L E R L L
Sbjct: 65 TPCVLGIDEAGRGPVLGPMVYSAFYLPIHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLC 124
Query: 70 ----KVNDSVGWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNIG-ILL 121
++DS GWAV ++ R++S+ ML + NLN + D+ I +I V+ I +
Sbjct: 125 TKGHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNSQALDATIEIIRGVVETQRIDV 184
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
EVY+DT+G E +QA+L + FP +K V+KKADSLYP VS AS+ AK
Sbjct: 185 KEVYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAK 232
>gi|409078396|gb|EKM78759.1| hypothetical protein AGABI1DRAFT_92329 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 237
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 99/172 (57%), Gaps = 20/172 (11%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
A P I+G+DEAGRGPVLGP+VYG YCP S++ L L FADSKTL E R LF+ L
Sbjct: 29 AEGPYILGVDEAGRGPVLGPLVYGVAYCPVSFKGKLEGLGFADSKTLAAEARSSLFDTLS 88
Query: 71 VNDS-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE------ 123
S +GW+ +S+ M+ + INLN S ++ LI L GI LTE
Sbjct: 89 SEPSNLGWSA-------ISSGMMKRPPINLNVQSEEATFLLIRETLAKGIQLTEVLISSN 141
Query: 124 ------VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
VY+D +G+ Y+ +LS+ FP I F V+ KADS + +V AS+ AK
Sbjct: 142 QEALTDVYVDALGNTTTYEKRLSELFPGITFTVTTKADSKFKIVGAASVAAK 193
>gi|326472233|gb|EGD96242.1| ribonuclease H2 subunit A [Trichophyton tonsurans CBS 112818]
Length = 361
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 102/168 (60%), Gaps = 11/168 (6%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL- 69
PC++GIDEAGRGPVLGPMVY Y P ++L +F DSK L E R L L
Sbjct: 65 TPCVLGIDEAGRGPVLGPMVYSAFYLPIHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLC 124
Query: 70 ----KVNDSVGWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNIG-ILL 121
++DS GWAV ++ R++S+ ML + NLN + D+ I +I V+ I +
Sbjct: 125 TKGHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNSQALDATIEIIRGVVETQRIDV 184
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
EVY+DT+G E +QA+L + FP +K V+KKADSLYP VS AS+ AK
Sbjct: 185 KEVYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAK 232
>gi|342879882|gb|EGU81115.1| hypothetical protein FOXB_08389 [Fusarium oxysporum Fo5176]
Length = 339
Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 98/167 (58%), Gaps = 8/167 (4%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFED 68
++ PC +G+DEAGRGPVLGPMVYG + P +L +F DSK L R +L
Sbjct: 56 SATPCCLGVDEAGRGPVLGPMVYGVFFLPIDLSDSLLREKHHFDDSKVLTPAVRSDLMRT 115
Query: 69 L-----KVNDSVGWAVDIIDPRELSAKMLN-KNKINLNEISHDSAIGLITRVLNIGILLT 122
L ++DS GWA + R++ A M N NLN + D+ + LI V +G+ +
Sbjct: 116 LCTPGSDLHDSCGWATASLSARDIGANMYRPTNAYNLNAQAMDATVDLIKAVYALGVNIQ 175
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E+Y+DT+G YQAKL + FP+ K V+KKADSLY VS AS+ AK
Sbjct: 176 EIYVDTIGQPAAYQAKLQRVFPTAKITVAKKADSLYACVSAASVCAK 222
>gi|167524000|ref|XP_001746336.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775098|gb|EDQ88723.1| predicted protein [Monosiga brevicollis MX1]
Length = 596
Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 105/192 (54%), Gaps = 36/192 (18%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY + P S + L FADSK L E KR+ELF+ +K N
Sbjct: 299 PCVLGVDEAGRGPVLGPMVYAVAFAPLSENARMKKLGFADSKQLSEAKRDELFKVIKENA 358
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE--------- 123
D +GW V ++ ++SA ML++ K NLN +H+S + L+ R+ G+ + E
Sbjct: 359 DWMGWKVHMLAASDISAGMLSRTKHNLNAQAHESTVDLVKRLHAQGVQIKEDLTYRLRLN 418
Query: 124 ---VYLDTVGDAEKYQAKLSQ----RFPSIKFVVSKK-------------------ADSL 157
+Y+DTVG A YQ +L P+IK VV K AD
Sbjct: 419 HRQLYVDTVGKAHIYQQQLENWLRPTIPNIKIVVESKLCVTHRVSDLCVLILDIANADVT 478
Query: 158 YPVVSGASIVAK 169
YP+VS ASI AK
Sbjct: 479 YPIVSAASICAK 490
>gi|255931627|ref|XP_002557370.1| Pc12g05230 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581989|emb|CAP80150.1| Pc12g05230 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 343
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 102/168 (60%), Gaps = 10/168 (5%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL 69
S PC++GIDEAGRGPVLGPMVYG Y P +L T +F DSK L R L L
Sbjct: 58 STPCVLGIDEAGRGPVLGPMVYGAFYLPLDLHHSLLTEKHSFDDSKVLTPAVRANLMHLL 117
Query: 70 KVN-----DSVGWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVL-NIGILL 121
+S G+A+ ++ R++S+ M+ NLN + D+ + +I V+ + G+ +
Sbjct: 118 NTPGDSLFESCGYAIKVLSARDISSGMMRSPTAVYNLNAQAMDATVEIIRGVVEDRGVDV 177
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
EVY+DT+G+ YQ KL + FPS+K V+KKADSLYP VS AS+ AK
Sbjct: 178 REVYIDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAK 225
>gi|50291445|ref|XP_448155.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527466|emb|CAG61106.1| unnamed protein product [Candida glabrata]
Length = 307
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/153 (47%), Positives = 90/153 (58%), Gaps = 7/153 (4%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQT--LATLNFADSKTLKEEKREELFEDLK 70
+P I+G+DEAGRGPV+GPMVYG YC YQ + F DSK L + R LF +
Sbjct: 39 SPVILGVDEAGRGPVMGPMVYGISYCTKEYQDKVLIPKYTFDDSKKLTDPVRRMLFSKMY 98
Query: 71 VN--DSVGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGILLTEVY 125
D VG+A I P ++S M NLNE +HD + LI V++ G+ + VY
Sbjct: 99 AGEIDQVGYATTAITPYDISTGMSRYPPSRNYNLNEQAHDVTMALIQGVIDRGVSIDHVY 158
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLY 158
+DTVG YQ KL RFPSIKF V+KKADSLY
Sbjct: 159 VDTVGPPASYQRKLEDRFPSIKFTVAKKADSLY 191
>gi|154318955|ref|XP_001558795.1| hypothetical protein BC1G_02429 [Botryotinia fuckeliana B05.10]
Length = 1493
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/160 (46%), Positives = 96/160 (60%), Gaps = 7/160 (4%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFEDLKVNDS 74
+GIDEAGRGPVLGPMVYG Y P L T +F DSK L R EL E L S
Sbjct: 69 LGIDEAGRGPVLGPMVYGLFYLPLPLSDPLLRNTHHFDDSKVLTPTVRSELMEKLCTPGS 128
Query: 75 -----VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
GWAVD++ R++ A M+ NLN + DS I LI V++ G+ + E+Y+D +
Sbjct: 129 DLYTQCGWAVDVMSARDIGANMMKPATYNLNAQAMDSTIALIQGVMDKGVNVKEIYIDAL 188
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G+ YQ KL + FP+ + V+KKADSLYP VS AS+ AK
Sbjct: 189 GNTVTYQKKLERIFPTAQITVAKKADSLYPCVSAASVCAK 228
>gi|384483740|gb|EIE75920.1| ribonuclease HII [Rhizopus delemar RA 99-880]
Length = 212
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 90/140 (64%), Gaps = 1/140 (0%)
Query: 31 MVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-DSVGWAVDIIDPRELSA 89
MVY YCP S Q L L F DSK L EEKR++L + ++ N D +GWAV +I PR++S
Sbjct: 1 MVYAVSYCPLSRHQELRDLGFDDSKKLTEEKRDQLAKLIETNKDWIGWAVYVISPRDIST 60
Query: 90 KMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFV 149
ML + NLNE++HD+ I LI V+ + L E+Y+D VG + Y+ KLS FP I
Sbjct: 61 NMLRRPVYNLNEMAHDATIKLIKEVVEKKLNLEEIYVDPVGPSASYKKKLSSFFPGIAIT 120
Query: 150 VSKKADSLYPVVSGASIVAK 169
V KAD+LYP+VS ASI AK
Sbjct: 121 VEPKADALYPIVSAASICAK 140
>gi|156842375|ref|XP_001644555.1| hypothetical protein Kpol_1003p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156115201|gb|EDO16697.1| hypothetical protein Kpol_1003p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 312
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 95/163 (58%), Gaps = 15/163 (9%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFA--DSKTLKEEKREELFED 68
+S+P I+G+DEAGRGPV+GPMVYG YC YQ T+ +A DSK L + R LF
Sbjct: 33 SSSPVILGVDEAGRGPVMGPMVYGISYCTKEYQDTVLIPKYAFDDSKKLTDNIRRNLFSK 92
Query: 69 LKVN----------DSVGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVL 115
+ D VG+A I P ++S+ ML NLNE +HD + LI ++
Sbjct: 93 MYDQNGDGTGEIEIDGVGYATTAITPVDISSGMLRYPPSQNYNLNEQAHDVTMNLIQGLV 152
Query: 116 NIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLY 158
G+ + VY+DTVG YQ KL RFP+IKF V+KKADSLY
Sbjct: 153 EKGVTIDHVYVDTVGPPVSYQKKLETRFPNIKFTVAKKADSLY 195
>gi|367000307|ref|XP_003684889.1| hypothetical protein TPHA_0C03020 [Tetrapisispora phaffii CBS 4417]
gi|357523186|emb|CCE62455.1| hypothetical protein TPHA_0C03020 [Tetrapisispora phaffii CBS 4417]
Length = 308
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 93/159 (58%), Gaps = 15/159 (9%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLN--FADSKTLKEEKREELF------ 66
I+G+DEAGRGPV+GPMVYG YC YQ + N F DSK L + R +LF
Sbjct: 36 VILGVDEAGRGPVMGPMVYGISYCTQRYQDEVLIPNYEFDDSKKLTDVVRRKLFAKMYEP 95
Query: 67 ----EDLKVNDSVGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGI 119
D D VG+A I P ++S+ ML NLNE +HD + LI V+ G+
Sbjct: 96 ITEGSDQVEIDGVGYATTAITPVDISSGMLRFPPSKNYNLNEQAHDVTMALIEGVVQRGV 155
Query: 120 LLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLY 158
+L VY+DTVG YQ KL +RFPSIKF V+KKADSLY
Sbjct: 156 VLDHVYVDTVGPPNSYQKKLEERFPSIKFTVAKKADSLY 194
>gi|224001680|ref|XP_002290512.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973934|gb|EED92264.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 249
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 100/158 (63%), Gaps = 4/158 (2%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRGPVLGPM Y Y S T F DSK L EKR LF+++K +DS+
Sbjct: 1 ILGIDEAGRGPVLGPMTYAAAYW--SPTATDIPEGFNDSKQLSAEKRASLFDEIKRSDSI 58
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
G+ + ++ E+S ML NLN +SHD+A+ +I VL+ G+ + Y+DTVG + Y
Sbjct: 59 GFVLRVLHASEISRNMLRSEPYNLNAMSHDAAMEMIWAVLDSGVKIETAYIDTVGMPDAY 118
Query: 136 QAKLSQRFP--SIKFVVSKKADSLYPVVSGASIVAKRS 171
++KL + F +I+F+V KKAD+ Y S AS+VAK S
Sbjct: 119 RSKLERVFQGHNIEFIVEKKADAKYAPCSAASVVAKES 156
>gi|366995529|ref|XP_003677528.1| hypothetical protein NCAS_0G02890 [Naumovozyma castellii CBS 4309]
gi|342303397|emb|CCC71176.1| hypothetical protein NCAS_0G02890 [Naumovozyma castellii CBS 4309]
Length = 299
Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 94/157 (59%), Gaps = 9/157 (5%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQT--LATLNFADSKTLKEEKREELFED 68
+P I+G+DEAGRGPVLGPMVYG YC YQ + +F DSK L + R +LF
Sbjct: 29 GDSPVILGVDEAGRGPVLGPMVYGISYCTSQYQDEVLIPHYDFDDSKKLTDAVRRDLFHK 88
Query: 69 LKVN---DSVGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGILLT 122
+ + VG+A +I P ++S+ ML NLN+ +HD + LI VL+ G+ L+
Sbjct: 89 MYETRDIEDVGYATTVITPTDISSGMLRFPPSKNYNLNQQAHDVTMDLIKGVLDRGVQLS 148
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSI-KFVVSKKADSLY 158
VY+DTVG YQ KL RFP + F V+KKADSLY
Sbjct: 149 HVYVDTVGPPASYQKKLEDRFPEVGAFTVAKKADSLY 185
>gi|219111921|ref|XP_002177712.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410597|gb|EEC50526.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 393
Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 96/156 (61%), Gaps = 4/156 (2%)
Query: 16 IMGIDEAGRGPVLGPMVYGC-LYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND- 73
++GIDEAGRG +LGPMVYG + PC + +F DSK L E+KR L + +
Sbjct: 113 VVGIDEAGRGSILGPMVYGAAFWNPCD--EDRIPNDFNDSKQLSEDKRAMLLHKIMYDTP 170
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
+G+AV ++ E+S ML NLN++SHD+A G+I +L G+ + ++DTVG+A+
Sbjct: 171 EMGFAVRVLHASEISRNMLRTESYNLNQMSHDAAAGIIEHLLEAGVQIGACFIDTVGNAD 230
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
Y+ +L Q FP I F V KAD+ YP S S+VAK
Sbjct: 231 HYKRRLQQEFPGIDFTVESKADAKYPPCSAGSVVAK 266
>gi|322699282|gb|EFY91045.1| Ribonuclease H2 subunit A [Metarhizium acridum CQMa 102]
Length = 337
Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 94/164 (57%), Gaps = 8/164 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELF----- 66
P +G+DEAGRGPVLGPMVYG Y P L T +F DSK L R L
Sbjct: 54 PLCLGVDEAGRGPVLGPMVYGIFYLPLPQSGPLLRDTHHFDDSKALTAAARSSLMRALCT 113
Query: 67 EDLKVNDSVGWAVDIIDPRELSAKMLNKNKI-NLNEISHDSAIGLITRVLNIGILLTEVY 125
E ++ GWA + R++SA ML + NLN + D+ + LI L G+ + EVY
Sbjct: 114 EGTDLHAQCGWATAALSARDISAGMLRPAGVYNLNAQAVDATVALIRGALKRGLNIREVY 173
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+DTVG +QA+L + FP+ K V+KKADSLYP VS AS+ AK
Sbjct: 174 VDTVGQPAAHQARLQRVFPTTKITVAKKADSLYPCVSAASVCAK 217
>gi|302308334|ref|NP_985219.2| AER363Wp [Ashbya gossypii ATCC 10895]
gi|299789405|gb|AAS53043.2| AER363Wp [Ashbya gossypii ATCC 10895]
gi|374108444|gb|AEY97351.1| FAER363Wp [Ashbya gossypii FDAG1]
Length = 304
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 92/150 (61%), Gaps = 6/150 (4%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLN-FADSKTLKEEKREELFEDLKVND- 73
I+G+DEAGRGPVLGPMVY YC SY+ T+ + F DSK L + R LF + +
Sbjct: 37 ILGVDEAGRGPVLGPMVYAVAYCTVSYEATIVRQHGFDDSKKLTDAVRRTLFGKICAAEL 96
Query: 74 -SVGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+G+A + P +S+ ML NLNE +HD+ I LI VL+ G+ + VY+DTV
Sbjct: 97 AGIGFATTGLSPAAISSGMLRYPPTKNYNLNEQAHDTTIALIQGVLDAGVRVEHVYVDTV 156
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYP 159
G YQAKL QRFP+ K V+KKADS +P
Sbjct: 157 GPPLAYQAKLQQRFPACKITVAKKADSTFP 186
>gi|154288434|ref|XP_001545012.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150408653|gb|EDN04194.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 341
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 99/167 (59%), Gaps = 10/167 (5%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDLK 70
PC++G+DEAGRGPVLGPMVY Y P +L +F DSK L E R L L
Sbjct: 54 TPCVLGVDEAGRGPVLGPMVYSAFYLPLPLHHSLLAEEYHFDDSKVLTPEVRSSLMRQLS 113
Query: 71 -----VNDSVGWAVDIIDPRELSAKML--NKNKINLNEISHDSAIGLITRVLN-IGILLT 122
++ S GW V ++ R+++A ML NLN + D+ LI ++ GI +
Sbjct: 114 TPGNSLSSSCGWGVKVMSARDIAAGMLRPGTRNYNLNAQAMDATTELIRCIVQERGINVK 173
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
EVY+DT+G+ E YQ KL Q FPS+K V+KKADSLYP VS AS+ AK
Sbjct: 174 EVYIDTIGNPEAYQRKLEQIFPSLKITVAKKADSLYPSVSAASVCAK 220
>gi|380488296|emb|CCF37475.1| ribonuclease HII [Colletotrichum higginsianum]
Length = 341
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 100/176 (56%), Gaps = 8/176 (4%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFED 68
+ P +G+DEAGRGPVLGPMVYG Y P L T +F DSK L R +L
Sbjct: 61 SGTPVCLGVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRETHHFDDSKVLTPAVRSQLMTA 120
Query: 69 L-----KVNDSVGWAVDIIDPRELSAKMLNKN-KINLNEISHDSAIGLITRVLNIGILLT 122
L + +S G+A+ + R++S+ M+ NLN + D+ + LI V G+ +
Sbjct: 121 LCTAGSDLAESCGFAISALSARDISSGMMRPGANYNLNAQAMDATVELIKGVFAQGVNVQ 180
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMDI 178
E+Y+DTVG YQAKL + FP+ K V KKADSLYP VS AS+ AK S +++
Sbjct: 181 EIYVDTVGQPAAYQAKLQRFFPATKITVEKKADSLYPCVSAASVCAKVSRDAALEV 236
>gi|396458422|ref|XP_003833824.1| similar to ribonuclease hi large subunit [Leptosphaeria maculans
JN3]
gi|312210372|emb|CBX90459.1| similar to ribonuclease hi large subunit [Leptosphaeria maculans
JN3]
Length = 357
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 103/165 (62%), Gaps = 7/165 (4%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFEDL 69
S ++G+DEAGRGPVLGPMVY Y P S +L T +F DSK L + R L L
Sbjct: 56 STEVVLGVDEAGRGPVLGPMVYALFYLPLSLHHSLLADTHHFNDSKVLTADFRTSLMRTL 115
Query: 70 -----KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV 124
++ + GWA + +++SA ML+ + NLN + D+ I LI VL G+ +T++
Sbjct: 116 CTPSTDLHAAAGWATRSLSAQDISAHMLSPSVYNLNAQAMDATIDLIKGVLEKGVNVTDI 175
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
Y+DT+G E YQ KL + +P+I+ V+KKADSLYPVVS AS+ AK
Sbjct: 176 YIDTIGKPEIYQKKLERIWPTIRITVAKKADSLYPVVSAASVCAK 220
>gi|310794509|gb|EFQ29970.1| ribonuclease HII [Glomerella graminicola M1.001]
Length = 344
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 97/167 (58%), Gaps = 8/167 (4%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFED 68
+ P +G+DEAGRGPVLGPMVYG Y P L T +F DSK L R +L
Sbjct: 63 SGTPVCLGVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRETHHFDDSKVLTPAVRSQLMAA 122
Query: 69 L-----KVNDSVGWAVDIIDPRELSAKMLNKN-KINLNEISHDSAIGLITRVLNIGILLT 122
L + +S G+A+ + R++S+ M+ NLN + D+ + LI V G+ +
Sbjct: 123 LCTAGSDLAESCGFAISALSARDISSGMMRPGANYNLNAQAMDATVELIKGVFAQGVNIQ 182
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E+Y+DTVG YQAKL + FP+ K V+KKADSLYP VS AS+ AK
Sbjct: 183 EIYVDTVGQPAAYQAKLQRFFPATKITVAKKADSLYPCVSAASVCAK 229
>gi|302413253|ref|XP_003004459.1| ribonuclease H2 subunit A [Verticillium albo-atrum VaMs.102]
gi|261357035|gb|EEY19463.1| ribonuclease H2 subunit A [Verticillium albo-atrum VaMs.102]
Length = 264
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 110/187 (58%), Gaps = 11/187 (5%)
Query: 3 SEAALPKWAS--NPCI-MGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTL 57
+ +A+P+ A+ +P + +GIDEAGRGPVLGPM Y Y P L T +F DSK L
Sbjct: 54 ASSAVPELAAPDSPAVCLGIDEAGRGPVLGPMTYAAFYLPMPLSDPLLRETHHFDDSKVL 113
Query: 58 KEEKREELFEDL-----KVNDSVGWAVDIIDPRELSAKMLNK-NKINLNEISHDSAIGLI 111
R L L + S G+AV + R++++ ML+ N NLN + D+ + +I
Sbjct: 114 TPAVRSALMRALCSPSTDLAASCGYAVRSLSARDIASGMLSTANPYNLNAQAFDATVEII 173
Query: 112 TRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRS 171
V+ G+ + E+Y+DTVG YQAKL + FPS+K V+KKADSLYP VS AS+ AK +
Sbjct: 174 KGVIARGVRVEEIYVDTVGQPAAYQAKLQRVFPSVKITVAKKADSLYPCVSAASVCAKVT 233
Query: 172 NFERMDI 178
+++
Sbjct: 234 RDAALEV 240
>gi|296233041|ref|XP_002761859.1| PREDICTED: ribonuclease H2 subunit A [Callithrix jacchus]
Length = 278
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 91/158 (57%), Gaps = 23/158 (14%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE L ++ +
Sbjct: 27 EPCVVGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERERLLGKMQED 86
Query: 73 DS-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
+ VGWA+D++ P +S ML + L +V V++DTVG
Sbjct: 87 GNFVGWALDVLSPNLISTSMLGR-------------FSLSRKV---------VFVDTVGM 124
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQ +L Q FP I+ V KAD+LYPVVS ASI AK
Sbjct: 125 PETYQKRLQQSFPGIEVTVKAKADALYPVVSAASICAK 162
>gi|225555530|gb|EEH03822.1| ribonuclease HI large subunit [Ajellomyces capsulatus G186AR]
Length = 341
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 97/167 (58%), Gaps = 10/167 (5%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDLK 70
PC++G+DEAGRGPVLGPMVY Y P +L +F DSK L R L L
Sbjct: 54 TPCVLGVDEAGRGPVLGPMVYSAFYLPLPLHHSLLAEEYHFDDSKVLTPAVRSSLMRQLS 113
Query: 71 VND-----SVGWAVDIIDPRELSAKML--NKNKINLNEISHDSAIGLITRVLN-IGILLT 122
D S GW V ++ R+++A ML NLN + D+ LI ++ GI +
Sbjct: 114 TPDNSLSSSCGWGVKVMSARDIAAGMLRPGTRNYNLNAQAMDATTELIRCIVQERGINVK 173
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
EVY+DT+G+ E YQ KL Q FPS+K V+KKADSLYP VS AS+ AK
Sbjct: 174 EVYIDTIGNPEAYQRKLEQIFPSLKITVAKKADSLYPSVSAASVCAK 220
>gi|401840962|gb|EJT43568.1| RNH201-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 307
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 93/163 (57%), Gaps = 9/163 (5%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLN--FADSKTLKEEKR 62
AAL + +P IMGIDEAGRGPV+GPMVY Y YQ + N F DSK L + R
Sbjct: 24 AALLEQNDSPVIMGIDEAGRGPVMGPMVYAVAYSTREYQDDIVIPNYEFDDSKKLTDPVR 83
Query: 63 EELF----EDLKVNDSVGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVL 115
+LF ED + +G+A I P ++S +K NLNE +HD + LI V
Sbjct: 84 RKLFAKMYEDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVT 143
Query: 116 NIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLY 158
+ L VY+DTVG YQ KL QRFP IKF V+KKADSLY
Sbjct: 144 KQNVKLDHVYVDTVGPPTSYQKKLEQRFPDIKFTVAKKADSLY 186
>gi|226287752|gb|EEH43265.1| ribonuclease H2 subunit A [Paracoccidioides brasiliensis Pb18]
Length = 343
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 100/167 (59%), Gaps = 10/167 (5%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFE--- 67
PC++G+DEAGRGPVLGPMVY Y P S +L +F DSK L R L
Sbjct: 55 TPCVLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFDDSKVLTPAVRTNLMRLLC 114
Query: 68 --DLKVNDSVGWAVDIIDPRELSAKMLNKN--KINLNEISHDSAIGLITRVLN-IGILLT 122
D +N S GW V ++ R++S ML NLN + D+ I LI ++ +G+ +
Sbjct: 115 TPDHSLNTSCGWGVKVMSARDISTGMLRSGTGNYNLNAQAMDATIELIICIVEKMGVNVK 174
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
EVY+DTVG+ E YQ KL + FP++K V+KKADSLYP VS AS+ AK
Sbjct: 175 EVYIDTVGNPETYQKKLKRIFPALKITVTKKADSLYPSVSAASVCAK 221
>gi|225684872|gb|EEH23156.1| ribonuclease H2 subunit A [Paracoccidioides brasiliensis Pb03]
Length = 343
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 100/167 (59%), Gaps = 10/167 (5%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFE--- 67
PC++G+DEAGRGPVLGPMVY Y P S +L +F DSK L R L
Sbjct: 55 TPCVLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFDDSKVLTPAVRTNLMRLLC 114
Query: 68 --DLKVNDSVGWAVDIIDPRELSAKMLNKN--KINLNEISHDSAIGLITRVLN-IGILLT 122
D +N S GW V ++ R++S ML NLN + D+ I LI ++ +G+ +
Sbjct: 115 TPDHSLNTSCGWGVKVMSARDISTGMLRSGTGNYNLNAQAMDATIELIICIVEKMGVNVK 174
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
EVY+DTVG+ E YQ KL + FP++K V+KKADSLYP VS AS+ AK
Sbjct: 175 EVYIDTVGNPETYQKKLKRIFPALKITVTKKADSLYPSVSAASVCAK 221
>gi|346323837|gb|EGX93435.1| ribonuclease HI large subunit [Cordyceps militaris CM01]
Length = 338
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 99/176 (56%), Gaps = 13/176 (7%)
Query: 7 LPKWASNP-----CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKE 59
LP+ SNP C +G+DEAGRGPVLGPMVYG Y P + L + +F DSK L
Sbjct: 44 LPQDPSNPASAVPCCLGVDEAGRGPVLGPMVYGVFYLPIAQSDALLRSAHHFDDSKVLTA 103
Query: 60 EKREELFEDL-----KVNDSVGWAVDIIDPRELSAKMLNK-NKINLNEISHDSAIGLITR 113
R L L ++ + GWA + R++ A ML NLN + D+ + LI
Sbjct: 104 GVRASLMATLCAPGSDLHAACGWATAALSARDIGANMLQPVGAYNLNAQAMDATVDLIRG 163
Query: 114 VLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
V G+ + E+Y+DT+G YQAKL + FP+ K V+KKADSLY VS AS+ AK
Sbjct: 164 VYARGVNVQEIYVDTIGPPATYQAKLQRIFPTAKVTVAKKADSLYACVSAASVCAK 219
>gi|453087271|gb|EMF15312.1| ribonuclease H-like protein [Mycosphaerella populorum SO2202]
Length = 374
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 101/179 (56%), Gaps = 24/179 (13%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFEDL--- 69
C++GIDEAGRGPVLGPMVYG Y P ++ TL T F DSK L R L + +
Sbjct: 60 CVLGIDEAGRGPVLGPMVYGLFYLPTTFHHTLLTQTYKFNDSKLLTPTFRSHLMQQICSP 119
Query: 70 --KVNDSVGWAVDIIDPRELSAKMLNKNKI----------------NLNEISHDSAIGLI 111
+ GWA+ + +++S+ ML NLN + ++ I LI
Sbjct: 120 ETPLYTHCGWAIRSLSAQDISSSMLRPTHTPFTSTSGAINATPQISNLNNQAIEATITLI 179
Query: 112 TRVL-NIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
++L ++ I + +Y+DT+G E YQAKL + FP++K V+KKADSL+P VS AS+ AK
Sbjct: 180 HQILYDLKINIQHIYIDTIGKPEIYQAKLEKIFPAVKITVAKKADSLFPCVSAASVCAK 238
>gi|365758681|gb|EHN00512.1| Rnh201p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 307
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 93/163 (57%), Gaps = 9/163 (5%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLN--FADSKTLKEEKR 62
AAL + +P IMGIDEAGRGPV+GPMVY Y YQ + N F DSK L + R
Sbjct: 24 AALLEQNDSPVIMGIDEAGRGPVMGPMVYAAAYSTREYQDEIVIPNYEFDDSKKLTDPVR 83
Query: 63 EELF----EDLKVNDSVGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVL 115
+LF ED + +G+A I P ++S +K NLNE +HD + LI V
Sbjct: 84 RKLFAKMYEDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVT 143
Query: 116 NIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLY 158
+ L VY+DTVG YQ KL QRFP IKF V+KKADSLY
Sbjct: 144 KQNVKLDHVYVDTVGPPMSYQKKLEQRFPDIKFTVAKKADSLY 186
>gi|119196321|ref|XP_001248764.1| hypothetical protein CIMG_02535 [Coccidioides immitis RS]
gi|392862022|gb|EAS37377.2| ribonuclease HII [Coccidioides immitis RS]
Length = 353
Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 103/176 (58%), Gaps = 10/176 (5%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFE--- 67
PC++G+DEAGRGPVLGPMVY Y P +L F DSK L R L
Sbjct: 67 TPCVLGVDEAGRGPVLGPMVYSAFYLPMPLHHSLLAEEHQFNDSKVLTPGIRSNLMRLLC 126
Query: 68 --DLKVNDSVGWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVLN-IGILLT 122
D +++S GWA+ ++ R++S+ M NLN + D+ + +I V+ G+ +
Sbjct: 127 TPDHPLHESCGWAIKLLSARDISSGMQRPGAAVYNLNAQAMDATVEIIRGVVEERGVDVK 186
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMDI 178
EVY+DT+G+ + YQ KL + FPS+K V+KKAD+L+P VS AS+ AK + ++I
Sbjct: 187 EVYIDTIGNPQTYQKKLERIFPSLKITVAKKADALFPCVSAASVCAKVTRDAALEI 242
>gi|303322466|ref|XP_003071226.1| ribonuclease H2 subunit A, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240110925|gb|EER29081.1| ribonuclease H2 subunit A, putative [Coccidioides posadasii C735
delta SOWgp]
gi|320040565|gb|EFW22498.1| ribonuclease HI large subunit [Coccidioides posadasii str.
Silveira]
Length = 353
Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 103/176 (58%), Gaps = 10/176 (5%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFE--- 67
PC++G+DEAGRGPVLGPMVY Y P +L F DSK L R L
Sbjct: 67 TPCVLGVDEAGRGPVLGPMVYSAFYLPMPLHHSLLAEEHQFNDSKVLTPGIRSNLMRLLC 126
Query: 68 --DLKVNDSVGWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVLN-IGILLT 122
D +++S GWA+ ++ R++S+ M NLN + D+ + +I V+ G+ +
Sbjct: 127 TPDHPLHESCGWAIKLLSARDISSGMQRPGAAVYNLNAQAMDATVEIIRGVVEERGVDVK 186
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMDI 178
EVY+DT+G+ + YQ KL + FPS+K V+KKAD+L+P VS AS+ AK + ++I
Sbjct: 187 EVYIDTIGNPQTYQKKLERIFPSLKITVAKKADALFPCVSAASVCAKVTRDAALEI 242
>gi|448117125|ref|XP_004203179.1| Piso0_000780 [Millerozyma farinosa CBS 7064]
gi|359384047|emb|CCE78751.1| Piso0_000780 [Millerozyma farinosa CBS 7064]
Length = 366
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 108/174 (62%), Gaps = 9/174 (5%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREE 64
+A+ P ++G+DEAGRGPVL P ++ + F+DSKTLKE R +
Sbjct: 78 SAIASQPDEPLVLGVDEAGRGPVLTPSFNVLESENPNFFNSAWYFGFSDSKTLKEGVRTD 137
Query: 65 LF-----EDLKVNDSVGWAVDIIDPRELSAKMLN----KNKINLNEISHDSAIGLITRVL 115
L E+ +++++VGWA I +++S+ ML K NLN+ +HD+ I LI +++
Sbjct: 138 LLQKIEDEEHELHNNVGWATTQISAKDISSGMLRSSLGKGAYNLNDQAHDTTIELIQQII 197
Query: 116 NIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+ + + ++++DTVG YQAKL +RFP ++ V+KKADSL+PVVS ASIVAK
Sbjct: 198 DKKLNIAKIFVDTVGPPASYQAKLQRRFPGVEVTVTKKADSLFPVVSTASIVAK 251
>gi|255718283|ref|XP_002555422.1| KLTH0G08976p [Lachancea thermotolerans]
gi|238936806|emb|CAR24985.1| KLTH0G08976p [Lachancea thermotolerans CBS 6340]
Length = 342
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/150 (48%), Positives = 91/150 (60%), Gaps = 7/150 (4%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFA--DSKTLKEEKREELFEDLKVN- 72
I+G+DEAGRGPVLGPMVYG YC YQ + +A DSK L + R +LF+ +
Sbjct: 81 ILGVDEAGRGPVLGPMVYGISYCTREYQDEVLKKRYAFDDSKKLTDPVRRDLFQRMYTGE 140
Query: 73 -DSVGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
D VG+A I ++S+ ML + NLNE +HD I LI VL G+ + VY+DT
Sbjct: 141 IDQVGYATTCISACDISSGMLRFPPEKNYNLNEQAHDVTIALIRGVLERGVAVEHVYVDT 200
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLY 158
VG YQ KL FPSIKF V+KKADSL+
Sbjct: 201 VGPPATYQRKLEGLFPSIKFTVAKKADSLF 230
>gi|403374437|gb|EJY87169.1| Ribonuclease [Oxytricha trifallax]
Length = 373
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 98/164 (59%), Gaps = 8/164 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL-ATLNFADSKTLKEEKREELFEDLKVN 72
PC +GIDEAGRGPVLGPMVYGC + P S + F DSK L E++REE+FE +K
Sbjct: 86 PCEIGIDEAGRGPVLGPMVYGCTFWPISQRDEFKKQYKFTDSKQLNEQQREEMFEQIKSC 145
Query: 73 D--SVGWAVDIIDPRELSAKMLNKNKI---NLNEISHDSAIGLITRVLNIGILLTEVYLD 127
+ +G+ ++ LS ML + K NLN ISHD+AI LI +V +G+ + V LD
Sbjct: 146 EFSRLGYFTAVLHADYLSNLMLAEMKSGGKNLNTISHDTAIDLIKKVKALGVNVKRVVLD 205
Query: 128 TVGDAEKYQAKLSQRFP--SIKFVVSKKADSLYPVVSGASIVAK 169
TVG Y+ L R ++ +V KAD +PVVS ASI AK
Sbjct: 206 TVGQPHSYKQLLHNRLKDDELEIIVESKADLNHPVVSAASICAK 249
>gi|295658160|ref|XP_002789642.1| ribonuclease H2 subunit A [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283127|gb|EEH38693.1| ribonuclease H2 subunit A [Paracoccidioides sp. 'lutzii' Pb01]
Length = 343
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 100/167 (59%), Gaps = 10/167 (5%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFE--- 67
PC++G+DEAGRGPVLGPM+Y Y P S +L +F DSK L R L
Sbjct: 55 TPCVLGVDEAGRGPVLGPMIYSAFYLPLSLHHSLLAKEHHFDDSKVLTPAVRTNLMRLLC 114
Query: 68 --DLKVNDSVGWAVDIIDPRELSAKMLNKN--KINLNEISHDSAIGLITRVL-NIGILLT 122
D +N S GW V ++ R++S ML NLN + D+ I LI ++ +G+ +
Sbjct: 115 TPDHSLNTSCGWGVKVLSARDISTGMLRSGTGNYNLNAQAMDATIELIICIVEKMGVNVK 174
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
EVY+DT+G+ E YQ KL + FP++K V+KKADSLYP VS AS+ AK
Sbjct: 175 EVYIDTIGNPETYQKKLKRIFPALKITVTKKADSLYPSVSAASVCAK 221
>gi|240273728|gb|EER37247.1| ribonuclease HI large subunit [Ajellomyces capsulatus H143]
gi|325094841|gb|EGC48151.1| ribonuclease HI large subunit [Ajellomyces capsulatus H88]
Length = 341
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 97/167 (58%), Gaps = 10/167 (5%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDLK 70
PC++G+DEAGRGPVLGPMVY Y P +L +F DSK L R L L
Sbjct: 54 TPCVLGVDEAGRGPVLGPMVYSAFYLPLPLHHSLLAEEYHFDDSKVLTPAVRSSLMRQLS 113
Query: 71 VND-----SVGWAVDIIDPRELSAKMLNKN--KINLNEISHDSAIGLITRVLN-IGILLT 122
D S GW V ++ R+++A ML NLN + D+ LI ++ GI +
Sbjct: 114 TPDNSLSSSCGWGVKVMSARDIAAGMLQPGTRNYNLNAQAMDATTELIRCIVQERGINVK 173
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
EVY+DT+G+ E YQ KL Q FPS++ V+KKADSLYP VS AS+ AK
Sbjct: 174 EVYIDTIGNPEAYQRKLEQIFPSLQITVAKKADSLYPSVSAASVCAK 220
>gi|367054002|ref|XP_003657379.1| hypothetical protein THITE_2122999 [Thielavia terrestris NRRL 8126]
gi|347004645|gb|AEO71043.1| hypothetical protein THITE_2122999 [Thielavia terrestris NRRL 8126]
Length = 366
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 97/176 (55%), Gaps = 14/176 (7%)
Query: 8 PKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREEL 65
P A PC +G+DEAGRGPVLGPMVYG Y P L A +F DSK L R L
Sbjct: 53 PGTAGPPCALGVDEAGRGPVLGPMVYGVFYLPLPLSDPLLRAAHHFDDSKVLTPAVRSAL 112
Query: 66 FEDL-----KVNDSVGWAVDIIDPRELSAKMLNKNK-------INLNEISHDSAIGLITR 113
L ++ S GWAV + R++ A ML NLN + D+ + L+
Sbjct: 113 MRTLCTPSSDLHASCGWAVTALSARDIGAGMLRPGGGAAGGAAYNLNAQAMDATVALVRA 172
Query: 114 VLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
V G+ + E+Y+DT+G YQA+L + FP+ K V+KKADSLYP VS AS+ AK
Sbjct: 173 VYARGVNVREIYVDTIGPPAAYQARLERVFPTAKITVAKKADSLYPCVSAASVCAK 228
>gi|302927067|ref|XP_003054420.1| hypothetical protein NECHADRAFT_75114 [Nectria haematococca mpVI
77-13-4]
gi|256735361|gb|EEU48707.1| hypothetical protein NECHADRAFT_75114 [Nectria haematococca mpVI
77-13-4]
Length = 343
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 96/164 (58%), Gaps = 8/164 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFEDL-- 69
PC +G+DEAGRGPVLGPMVYG + P + +L T +F DSK L R +L L
Sbjct: 67 PCCLGVDEAGRGPVLGPMVYGVFFLPLTISDSLLRDTHHFDDSKVLTAAVRSKLMRTLCT 126
Query: 70 ---KVNDSVGWAVDIIDPRELSAKMLNKNKI-NLNEISHDSAIGLITRVLNIGILLTEVY 125
++ GWA+ + R+++ ML+ NLN + D+ + LI G+ + E+Y
Sbjct: 127 PGSDLHTECGWAIKALSARDITTGMLHPTTTYNLNAQALDATVDLIKAAYAAGVNVQEIY 186
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+DTVG +QAKL + FP+ K V+KKADSL+ VS AS+ AK
Sbjct: 187 VDTVGPPASHQAKLQRFFPTAKITVTKKADSLFACVSAASVCAK 230
>gi|67537888|ref|XP_662718.1| hypothetical protein AN5114.2 [Aspergillus nidulans FGSC A4]
gi|40743105|gb|EAA62295.1| hypothetical protein AN5114.2 [Aspergillus nidulans FGSC A4]
gi|259484559|tpe|CBF80886.1| TPA: ribonuclease HI large subunit (AFU_orthologue; AFUA_1G07600)
[Aspergillus nidulans FGSC A4]
Length = 339
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 78/182 (42%), Positives = 106/182 (58%), Gaps = 14/182 (7%)
Query: 11 ASNP----CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREE 64
A+NP I+GIDEAGRGPVLGPMVY Y P S +L + +F DSK L R
Sbjct: 55 ATNPEHDYLILGIDEAGRGPVLGPMVYSAFYLPSSLHHSLLSEEYSFNDSKVLTAGVRAN 114
Query: 65 LFEDL-----KVNDSVGWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVLNI 117
L L +++S GWA ++ R++S+ M+ NLN + D+ I LI V+
Sbjct: 115 LMRILCTQGSPLHESCGWATKLLSARDISSGMMRPAAGVYNLNAQAMDATIELIRGVVEE 174
Query: 118 GIL-LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
L + EVY+DT+G+ YQ KL FPS++ V+KKADSLYP VS AS+VAK + +
Sbjct: 175 RKLNVREVYIDTIGNPASYQKKLEMVFPSLRITVAKKADSLYPCVSAASVVAKVTRDVAL 234
Query: 177 DI 178
D+
Sbjct: 235 DV 236
>gi|402224753|gb|EJU04815.1| ribonuclease H-like protein [Dacryopinax sp. DJM-731 SS1]
Length = 312
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 95/155 (61%), Gaps = 2/155 (1%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS- 74
++GIDEAGRGP LGPMVY YCP ++Q L+ L F DSK L + R +L L + +
Sbjct: 51 MVGIDEAGRGPALGPMVYAAAYCPVDWEQ-LSELGFNDSKVLTADTRTKLLGTLSAHPTH 109
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+GW+V ++ P +S ML + NLN S ++ + ++ +L G+ +T++++D +G +
Sbjct: 110 LGWSVQVLAPSSISQGMLARPPTNLNVQSQNATVHILRSLLQAGLNITQIFVDALGPSVP 169
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
YQ L FPS + V KADS+Y +V AS+ AK
Sbjct: 170 YQKYLQSLFPSAEVTVCPKADSIYEIVGAASVAAK 204
>gi|346972898|gb|EGY16350.1| ribonuclease H2 subunit A [Verticillium dahliae VdLs.17]
Length = 351
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 99/168 (58%), Gaps = 9/168 (5%)
Query: 11 ASNPCI-MGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFE 67
A +P + +GIDEAGRGPVLGPM Y Y P L T +F DSK L R L
Sbjct: 64 ADSPAVCLGIDEAGRGPVLGPMTYAAFYLPMPLSDPLLRETHHFDDSKVLTPAVRSALMR 123
Query: 68 DL-----KVNDSVGWAVDIIDPRELSAKMLNK-NKINLNEISHDSAIGLITRVLNIGILL 121
L + S G+AV + R++++ ML+ N NLN + D+ + +I V+ G+ +
Sbjct: 124 ALCSPSTDLAASCGYAVRSLSARDIASGMLSTANPYNLNAQAFDATVEIIKGVIARGVRV 183
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E+Y+DTVG YQAKL + FPS+K V+KKADSLYP VS AS+ AK
Sbjct: 184 EEIYVDTVGQPAAYQAKLQRVFPSVKITVAKKADSLYPCVSAASVCAK 231
>gi|145238902|ref|XP_001392098.1| ribonuclease H2 subunit A [Aspergillus niger CBS 513.88]
gi|134076599|emb|CAK45152.1| unnamed protein product [Aspergillus niger]
Length = 352
Score = 128 bits (322), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 105/176 (59%), Gaps = 10/176 (5%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL- 69
N I+G+DEAGRGPVLGPMVY Y P TL T +F DSK L R L + L
Sbjct: 65 NYLILGVDEAGRGPVLGPMVYSAFYLPQDLHHTLLTRDYSFNDSKALTPGVRANLMKLLC 124
Query: 70 ----KVNDSVGWAVDIIDPRELSAKML--NKNKINLNEISHDSAIGLITRVL-NIGILLT 122
+++S GWAV ++ R++S+ M+ NLN + D+ I LI ++ + + +
Sbjct: 125 TPGNPLHESCGWAVKLLSARDISSGMMRPGTGAYNLNAQAMDATIELIRGIIEDRNMDVR 184
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMDI 178
EVY+DT+G+ YQ KL + FPS++ V+KKADSLYP VS AS+ AK + +D+
Sbjct: 185 EVYIDTIGNPATYQQKLEKIFPSLRITVAKKADSLYPCVSAASVAAKVTRDVALDL 240
>gi|350636009|gb|EHA24370.1| hypothetical protein ASPNIDRAFT_209236 [Aspergillus niger ATCC
1015]
Length = 352
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 106/178 (59%), Gaps = 10/178 (5%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFED 68
+ N I+G+DEAGRGPVLGPMVY Y P TL T +F DSK L R L +
Sbjct: 63 SPNYLILGVDEAGRGPVLGPMVYSAFYLPQDLHHTLLTRDYSFNDSKVLTPGVRANLMKL 122
Query: 69 L-----KVNDSVGWAVDIIDPRELSAKML--NKNKINLNEISHDSAIGLITRVL-NIGIL 120
L +++S GWAV ++ R++S+ M+ NLN + D+ I LI ++ + +
Sbjct: 123 LCTPGNPLHESCGWAVKLLSARDISSGMMRPGTGAYNLNAQAMDATIELIRGIIEDRNMD 182
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMDI 178
+ EVY+DT+G+ YQ KL + FPS++ V+KKADSLYP VS AS+ AK + +D+
Sbjct: 183 VREVYIDTIGNPATYQQKLEKIFPSLRITVAKKADSLYPCVSAASVAAKVTRDVALDL 240
>gi|361126847|gb|EHK98833.1| putative Ribonuclease H2 subunit A [Glarea lozoyensis 74030]
Length = 344
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 95/164 (57%), Gaps = 8/164 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFEDL-- 69
PC +G+DEAGRGPVLGPMVYG Y P L T +F DSK L R L E L
Sbjct: 63 PCALGVDEAGRGPVLGPMVYGLFYLPLPLSDPLLRQTHHFDDSKVLTPTVRSSLMETLCT 122
Query: 70 ---KVNDSVGWAVDIIDPRELSAKMLNKNKI-NLNEISHDSAIGLITRVLNIGILLTEVY 125
+ GWAV+++ R++ A M+ NLN + D+ I LI V G+ + E+Y
Sbjct: 123 PSTDLYTQCGWAVEVMSARDIGANMMKPAATYNLNAQAMDATINLIHGVYRQGVNVKEIY 182
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+DT+G+ YQ KL + FP+ V+KKADSLYP VS AS+ AK
Sbjct: 183 IDTIGNPATYQRKLEKIFPTALVTVAKKADSLYPCVSAASVCAK 226
>gi|401623866|gb|EJS41947.1| rnh201p [Saccharomyces arboricola H-6]
Length = 307
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 90/159 (56%), Gaps = 9/159 (5%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLN--FADSKTLKEEKREELF 66
K+ +P IMGIDEAGRGPV+GPMVY Y YQ N F DSK L + R +LF
Sbjct: 28 KYNDSPVIMGIDEAGRGPVMGPMVYAVAYSTQKYQDETVIPNYEFDDSKKLTDPIRRKLF 87
Query: 67 EDLKVND----SVGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVLNIGI 119
+ ++ +G+A I P ++S +K NLNE +HD + LI VL +
Sbjct: 88 AKMYEHNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVLKQDV 147
Query: 120 LLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLY 158
L VY+DTVG YQ KL QRFP KF V+KKADSLY
Sbjct: 148 KLDHVYVDTVGPPASYQKKLEQRFPDTKFTVAKKADSLY 186
>gi|148665343|gb|EDK97759.1| phosphatidylinositol glycan anchor biosynthesis, class Z [Mus
musculus]
Length = 799
Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 70/158 (44%), Positives = 91/158 (57%), Gaps = 21/158 (13%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGR PVLGPMVY YCP S L ADSKTL E +RE LF ++ +
Sbjct: 28 PCVLGVDEAGRAPVLGPMVYAICYCPLSRLADPEALKVADSKTLTENERERLFTKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI-GILLTEVYLDTVGD 131
D VGW++D++ P +S ML + K NLN +SHD+A LI +I G ++T +
Sbjct: 88 DFVGWSLDVLSPNLISISMLGRVKYNLNSLSHDTAAELIWNARDIPGSIITAL------- 140
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
I+ V KADSL+PVVS ASI AK
Sbjct: 141 ------------SGIEVTVKAKADSLFPVVSAASIFAK 166
>gi|256274456|gb|EEU09358.1| Rnh201p [Saccharomyces cerevisiae JAY291]
Length = 307
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 93/163 (57%), Gaps = 9/163 (5%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQ--TLATLNFADSKTLKEEKR 62
+AL + +P IMGIDEAGRGPVLGPMVY Y YQ + F DSK L + R
Sbjct: 24 SALLEQKDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83
Query: 63 EELFEDLKVND----SVGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVL 115
LF + ++ +G+A I P ++S +K NLNE +HD + LI V+
Sbjct: 84 RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVI 143
Query: 116 NIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLY 158
+ L+ VY+DTVG YQ KL QRFP +KF V+KKADSLY
Sbjct: 144 KQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLY 186
>gi|323303245|gb|EGA57043.1| Rnh201p [Saccharomyces cerevisiae FostersB]
gi|349580865|dbj|GAA26024.1| K7_Rnh201p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 307
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 93/163 (57%), Gaps = 9/163 (5%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQ--TLATLNFADSKTLKEEKR 62
+AL + +P IMGIDEAGRGPVLGPMVY Y YQ + F DSK L + R
Sbjct: 24 SALLEQKDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83
Query: 63 EELFEDLKVND----SVGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVL 115
LF + ++ +G+A I P ++S +K NLNE +HD + LI V+
Sbjct: 84 RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVI 143
Query: 116 NIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLY 158
+ L+ VY+DTVG YQ KL QRFP +KF V+KKADSLY
Sbjct: 144 KQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLY 186
>gi|239613574|gb|EEQ90561.1| ribonuclease HI large subunit [Ajellomyces dermatitidis ER-3]
gi|327352659|gb|EGE81516.1| ribonuclease [Ajellomyces dermatitidis ATCC 18188]
Length = 343
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 99/167 (59%), Gaps = 10/167 (5%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFE--- 67
PC++G+DEAGRGPVLGPMVY Y P S +L +F DSK L R L
Sbjct: 55 TPCVLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFDDSKVLTPAVRSNLMHLLC 114
Query: 68 --DLKVNDSVGWAVDIIDPRELSAKMLN--KNKINLNEISHDSAIGLITRVLN-IGILLT 122
D ++ S GW V ++ R++SA ML NLN + D+ LI ++ G+ +
Sbjct: 115 SPDNSLSTSCGWGVKVMSARDISAGMLRPRTRNYNLNAQAMDATTELIRCIVEEKGVNVR 174
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
EVY+DT+G+ E YQ KL + FPS+K V+KKADSLYP VS ASI AK
Sbjct: 175 EVYIDTIGNPETYQRKLERVFPSLKITVAKKADSLYPSVSAASICAK 221
>gi|261192900|ref|XP_002622856.1| ribonuclease HI large subunit [Ajellomyces dermatitidis SLH14081]
gi|239588991|gb|EEQ71634.1| ribonuclease HI large subunit [Ajellomyces dermatitidis SLH14081]
Length = 343
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 99/167 (59%), Gaps = 10/167 (5%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFE--- 67
PC++G+DEAGRGPVLGPMVY Y P S +L +F DSK L R L
Sbjct: 55 TPCVLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFDDSKVLTPAVRSNLMHLLC 114
Query: 68 --DLKVNDSVGWAVDIIDPRELSAKMLN--KNKINLNEISHDSAIGLITRVLN-IGILLT 122
D ++ S GW V ++ R++SA ML NLN + D+ LI ++ G+ +
Sbjct: 115 SPDNSLSTSCGWGVKVMSARDISAGMLRPRTRNYNLNAQAMDATTELIRCIVEEKGVNVR 174
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
EVY+DT+G+ E YQ KL + FPS+K V+KKADSLYP VS ASI AK
Sbjct: 175 EVYIDTIGNPETYQRKLERVFPSLKITVAKKADSLYPSVSAASICAK 221
>gi|323335818|gb|EGA77097.1| Rnh201p [Saccharomyces cerevisiae Vin13]
gi|365763336|gb|EHN04865.1| Rnh201p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 307
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 93/163 (57%), Gaps = 9/163 (5%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQ--TLATLNFADSKTLKEEKR 62
+AL + +P IMGIDEAGRGPVLGPMVY Y YQ + F DSK L + R
Sbjct: 24 SALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83
Query: 63 EELFEDLKVND----SVGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVL 115
LF + ++ +G+A I P ++S +K NLNE +HD + LI V+
Sbjct: 84 RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVI 143
Query: 116 NIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLY 158
+ L+ VY+DTVG YQ KL QRFP +KF V+KKADSLY
Sbjct: 144 KQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLY 186
>gi|323346904|gb|EGA81183.1| Rnh201p [Saccharomyces cerevisiae Lalvin QA23]
Length = 307
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 93/163 (57%), Gaps = 9/163 (5%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQ--TLATLNFADSKTLKEEKR 62
+AL + +P IMGIDEAGRGPVLGPMVY Y YQ + F DSK L + R
Sbjct: 24 SALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83
Query: 63 EELFEDLKVND----SVGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVL 115
LF + ++ +G+A I P ++S +K NLNE +HD + LI V+
Sbjct: 84 RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVI 143
Query: 116 NIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLY 158
+ L+ VY+DTVG YQ KL QRFP +KF V+KKADSLY
Sbjct: 144 KQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLY 186
>gi|6324257|ref|NP_014327.1| Rnh201p [Saccharomyces cerevisiae S288c]
gi|1730743|sp|P53942.1|RNH2A_YEAST RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=RNase H(201); AltName: Full=RNase H(35);
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|791114|emb|CAA60188.1| unknown [Saccharomyces cerevisiae]
gi|1301957|emb|CAA95946.1| unnamed protein product [Saccharomyces cerevisiae]
gi|190409061|gb|EDV12326.1| ribonuclease HI 35 large subunit [Saccharomyces cerevisiae RM11-1a]
gi|207341690|gb|EDZ69676.1| YNL072Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|285814579|tpg|DAA10473.1| TPA: Rnh201p [Saccharomyces cerevisiae S288c]
gi|323331967|gb|EGA73379.1| Rnh201p [Saccharomyces cerevisiae AWRI796]
gi|323352575|gb|EGA85074.1| Rnh201p [Saccharomyces cerevisiae VL3]
gi|392296919|gb|EIW08020.1| Rnh201p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 307
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 93/163 (57%), Gaps = 9/163 (5%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQ--TLATLNFADSKTLKEEKR 62
+AL + +P IMGIDEAGRGPVLGPMVY Y YQ + F DSK L + R
Sbjct: 24 SALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83
Query: 63 EELFEDLKVND----SVGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVL 115
LF + ++ +G+A I P ++S +K NLNE +HD + LI V+
Sbjct: 84 RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVI 143
Query: 116 NIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLY 158
+ L+ VY+DTVG YQ KL QRFP +KF V+KKADSLY
Sbjct: 144 KQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLY 186
>gi|151944462|gb|EDN62740.1| Rnh2A [Saccharomyces cerevisiae YJM789]
gi|259149289|emb|CAY82531.1| Rnh201p [Saccharomyces cerevisiae EC1118]
Length = 307
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 93/163 (57%), Gaps = 9/163 (5%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQ--TLATLNFADSKTLKEEKR 62
+AL + +P IMGIDEAGRGPVLGPMVY Y YQ + F DSK L + R
Sbjct: 24 SALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83
Query: 63 EELFEDLKVND----SVGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVL 115
LF + ++ +G+A I P ++S +K NLNE +HD + LI V+
Sbjct: 84 RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVI 143
Query: 116 NIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLY 158
+ L+ VY+DTVG YQ KL QRFP +KF V+KKADSLY
Sbjct: 144 KQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLY 186
>gi|164422805|ref|XP_963372.2| hypothetical protein NCU09608 [Neurospora crassa OR74A]
gi|157069829|gb|EAA34136.2| hypothetical protein NCU09608 [Neurospora crassa OR74A]
Length = 381
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 103/168 (61%), Gaps = 10/168 (5%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFEDL 69
+ PC +G+DEAGRGPVLGPMVY Y P + L +F DSK L R L ++L
Sbjct: 41 NTPCCLGVDEAGRGPVLGPMVYSAFYLPLTLSDPLLKQKHSFDDSKVLTPAVRLSLMKEL 100
Query: 70 -----KVNDSVGWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNIGILL 121
+++D+ G+A + P +S+ ML +K NLN+ + D+ I LI + G+ +
Sbjct: 101 CTKDTELHDNCGYATSSLSPLSISSGMLKASKAQIYNLNQQAMDATIALIKGIYERGVNV 160
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
T++++DT+G YQ KL + FP+ K V+KKADSLYPVVS AS+VAK
Sbjct: 161 TDIFIDTIGQPAAYQKKLERVFPTAKITVAKKADSLYPVVSAASVVAK 208
>gi|336469012|gb|EGO57175.1| hypothetical protein NEUTE1DRAFT_123501 [Neurospora tetrasperma
FGSC 2508]
gi|350288681|gb|EGZ69906.1| hypothetical protein NEUTE2DRAFT_112272 [Neurospora tetrasperma
FGSC 2509]
Length = 381
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 103/168 (61%), Gaps = 10/168 (5%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFEDL 69
+ PC +G+DEAGRGPVLGPMVY Y P + L +F DSK L R L ++L
Sbjct: 41 NTPCCLGVDEAGRGPVLGPMVYSAFYLPLTLSDPLLKQKHSFDDSKVLTPAVRLSLMKEL 100
Query: 70 -----KVNDSVGWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNIGILL 121
+++D+ G+A + P +S+ ML +K NLN+ + D+ I LI + G+ +
Sbjct: 101 CTKDTELHDNCGYATSSLSPLSISSGMLKASKAQIYNLNQQAMDATIALIKGIYERGVNV 160
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
T++++DT+G YQ KL + FP+ K V+KKADSLYPVVS AS+VAK
Sbjct: 161 TDIFIDTIGQPAAYQKKLERVFPTAKITVAKKADSLYPVVSAASVVAK 208
>gi|11387103|sp|Q9P5X8.1|RNH2A_NEUCR RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|7800995|emb|CAB91392.1| probable 35 kDa ribonuclease H [Neurospora crassa]
Length = 317
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 103/168 (61%), Gaps = 10/168 (5%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFEDL 69
+ PC +G+DEAGRGPVLGPMVY Y P + L +F DSK L R L ++L
Sbjct: 41 NTPCCLGVDEAGRGPVLGPMVYSAFYLPLTLSDPLLKQKHSFDDSKVLTPAVRLSLMKEL 100
Query: 70 -----KVNDSVGWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNIGILL 121
+++D+ G+A + P +S+ ML +K NLN+ + D+ I LI + G+ +
Sbjct: 101 CTKDTELHDNCGYATSSLSPLSISSGMLKASKAQIYNLNQQAMDATIALIKGIYERGVNV 160
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
T++++DT+G YQ KL + FP+ K V+KKADSLYPVVS AS+VAK
Sbjct: 161 TDIFIDTIGQPAAYQKKLERVFPTAKITVAKKADSLYPVVSAASVVAK 208
>gi|255710295|gb|ACU30967.1| ribonuclease HI [Ochlerotatus triseriatus]
Length = 235
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/119 (52%), Positives = 84/119 (70%), Gaps = 4/119 (3%)
Query: 57 LKEEKREELFEDLKVND----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLIT 112
L EEKR+ +F+++ D S+GWAV++I P ++ ML + K +LNE+S DSAIGLI
Sbjct: 2 LTEEKRDVIFDEMNQKDYATESIGWAVEVISPNDICMSMLRRTKRSLNEVSMDSAIGLIN 61
Query: 113 RVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRS 171
+ ++ G+ + EVY+DTVG EKYQAKL Q FP K V+KKADS YP+VS ASI AK S
Sbjct: 62 KAIDAGVNIAEVYVDTVGPPEKYQAKLKQLFPKFKITVAKKADSTYPIVSAASICAKVS 120
>gi|336258469|ref|XP_003344047.1| hypothetical protein SMAC_08904 [Sordaria macrospora k-hell]
gi|380087310|emb|CCC14315.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 397
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 103/168 (61%), Gaps = 10/168 (5%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFEDL 69
+ PC +G+DEAGRGPVLGPMVY Y P + L +F DSK L R L ++L
Sbjct: 49 NTPCCLGVDEAGRGPVLGPMVYSAFYLPLTLSDPLLKQKHSFDDSKVLTPAVRLSLMKEL 108
Query: 70 -----KVNDSVGWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNIGILL 121
+++D+ G+A + P +S+ ML +K NLN+ + D+ I LI + G+ +
Sbjct: 109 CTKETELHDNCGYATSSLSPLSISSGMLKASKSQIYNLNQQAMDATIELIKGIYKRGVNV 168
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
T++++DT+G YQ KL + FP+ K V+KKADSLYPVVS AS+VAK
Sbjct: 169 TDIFIDTIGQPAAYQKKLERVFPTAKITVAKKADSLYPVVSAASVVAK 216
>gi|358368996|dbj|GAA85612.1| ribonuclease HI large subunit [Aspergillus kawachii IFO 4308]
Length = 353
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 105/176 (59%), Gaps = 10/176 (5%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL- 69
N ++G+DEAGRGPVLGPMVY Y P +L T +F DSK L R L + L
Sbjct: 65 NRLVLGVDEAGRGPVLGPMVYSAFYLPQDLHHSLLTRDYSFNDSKVLTPGVRANLMKLLC 124
Query: 70 ----KVNDSVGWAVDIIDPRELSAKML--NKNKINLNEISHDSAIGLITRVL-NIGILLT 122
+++S GWAV ++ R++S+ M+ NLN + D+ I LI ++ + + +
Sbjct: 125 TPGNPLHESCGWAVKLLSARDISSGMMRPGAGAYNLNAQAMDATIELIRGIIEDRDMDVR 184
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMDI 178
EVY+DT+G+ YQ KL + FPS++ V+KKADSLYP VS AS+ AK + +D+
Sbjct: 185 EVYIDTIGNPATYQQKLEKIFPSLRITVAKKADSLYPCVSAASVAAKVTRDVALDL 240
>gi|323449222|gb|EGB05112.1| hypothetical protein AURANDRAFT_12637 [Aureococcus anophagefferens]
Length = 229
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 96/156 (61%), Gaps = 3/156 (1%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFEDLKVNDS 74
+GIDEAGRGPVLG M +G Y + + + DSK L +EKR +LF+ + ++
Sbjct: 11 LGIDEAGRGPVLGAMTFGTCYWSIADDDAIEASQKEIDDSKQLTDEKRSKLFDRIAADER 70
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+GWAV+++ +SA+ML +LN IS D+ LI RVL+ G + E ++DTVG+ +
Sbjct: 71 MGWAVEVVSAARISAEMLQVKPTSLNAISFDATCRLIQRVLDRGADVVEAFVDTVGNPDS 130
Query: 135 YQAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAK 169
Y +L++ F IKF V+KKAD+LY ASI AK
Sbjct: 131 YSERLTRAFDGKIKFTVAKKADALYKCTGAASICAK 166
>gi|171689874|ref|XP_001909876.1| hypothetical protein [Podospora anserina S mat+]
gi|170944899|emb|CAP71010.1| unnamed protein product [Podospora anserina S mat+]
Length = 342
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 98/169 (57%), Gaps = 11/169 (6%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFEDL 69
S P +G+DEAGRGPVLGPMVYG Y P L T +F DSK L + R L + L
Sbjct: 51 SVPVCLGVDEAGRGPVLGPMVYGIFYLPLPLSDPLLRQTHHFDDSKVLTPQVRSSLMQTL 110
Query: 70 K-----VNDSVGWAVDIIDPRELSAKMLNKN----KINLNEISHDSAIGLITRVLNIGIL 120
++ S GWA ++ ++SA M+ + NLN + D+ + LI + + G+
Sbjct: 111 STAGSDLHQSCGWATTLLSAGDISAGMMRPSNAGGSYNLNAQAMDATVQLIQGIYDRGVN 170
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+ E+Y+DT+G YQ KL + FP+ K V+KKADSLYP VS AS+ AK
Sbjct: 171 IQEIYVDTIGQPAAYQKKLERIFPTAKITVAKKADSLYPCVSAASVCAK 219
>gi|258569747|ref|XP_002543677.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237903947|gb|EEP78348.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 352
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 104/181 (57%), Gaps = 10/181 (5%)
Query: 8 PKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREEL 65
P + PC++G+DEAGRGPVLGPMVY Y P S +L +F DSK L R L
Sbjct: 61 PSIPTTPCVLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFNDSKVLTPGVRSNL 120
Query: 66 FEDL-----KVNDSVGWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVLN-I 117
L + S GWAV ++ R++SA M NLN + D+ + +I V+
Sbjct: 121 MRLLCTPGHSLQKSCGWAVKLLSARDISAGMQRPGAGMYNLNAQAMDATVEIIRGVVEER 180
Query: 118 GILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
G+ + EVY+DT+G+ + YQ KL FPS+K V+KKADSL+P VS AS+ AK + +D
Sbjct: 181 GVDVKEVYIDTIGNPQSYQKKLEMIFPSLKITVAKKADSLFPCVSAASVCAKVTRDSALD 240
Query: 178 I 178
I
Sbjct: 241 I 241
>gi|296810182|ref|XP_002845429.1| ribonuclease H2 subunit A [Arthroderma otae CBS 113480]
gi|238842817|gb|EEQ32479.1| ribonuclease H2 subunit A [Arthroderma otae CBS 113480]
Length = 342
Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 99/163 (60%), Gaps = 18/163 (11%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED-LK 70
+ PC++GIDEAGRGPVLGPMVY Y P ++L L EE F+D
Sbjct: 64 TTPCVLGIDEAGRGPVLGPMVYSAFYLPMHLHKSL----------LAEEHH---FDDSHS 110
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNIG-ILLTEVYL 126
+++S GWAV ++ R++S+ ML + NLN + D+ I +I V+ I + EVY+
Sbjct: 111 LHNSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQRIDVKEVYV 170
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
DT+G E +QA+L + FP +K V+KKADSLYP VS AS+ AK
Sbjct: 171 DTIGKPETHQARLLRVFPGLKITVAKKADSLYPSVSAASVCAK 213
>gi|325189407|emb|CCA23898.1| ribonuclease H2 subunit A putative [Albugo laibachii Nc14]
Length = 303
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 93/161 (57%), Gaps = 5/161 (3%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
NP IMGIDEAGRGPVLGPMVY Y + + F DSK L R+ L++ + +
Sbjct: 21 NPVIMGIDEAGRGPVLGPMVYSAAYWAIDSNEACEAMGFDDSKVLSAASRKSLYKTITES 80
Query: 73 DSVG---WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+G W + E+S KM K + NLNEI+ D+ I +I V + L VY+DT+
Sbjct: 81 TEIGSISWIARSVSACEISDKMQRKVR-NLNEIARDATIQIIEIVQAKRVCLQCVYVDTI 139
Query: 130 GDAEKYQAKLSQRF-PSIKFVVSKKADSLYPVVSGASIVAK 169
GD YQ L++ F I FVV KKAD L+ +VS ASIVAK
Sbjct: 140 GDPSWYQNFLTKHFREKITFVVRKKADQLFKIVSAASIVAK 180
>gi|403218559|emb|CCK73049.1| hypothetical protein KNAG_0M01960 [Kazachstania naganishii CBS
8797]
Length = 301
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 93/155 (60%), Gaps = 8/155 (5%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLN--FADSKTLKEEKREELFEDL 69
++P I+G+DEAGRGPV+GPMVYG YC SY++ N F DSK L + R LFE +
Sbjct: 32 NDPVILGVDEAGRGPVVGPMVYGVAYCKRSYEEDFIKRNYEFDDSKKLTDPVRRSLFEKM 91
Query: 70 KVNDSV---GWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGILLTE 123
+ + G+A +I ++S+ M + NLNE +H+ + LI L+ G+ L
Sbjct: 92 YGSAEISELGYATTVITATDISSGMSRFPPSKQYNLNEQAHNVTMDLIQGCLDRGVKLHH 151
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLY 158
VY+DTVG YQ KL RFP +F V+KKADSL+
Sbjct: 152 VYVDTVGPPVSYQKKLEDRFPQQRFTVTKKADSLF 186
>gi|123502031|ref|XP_001328204.1| ribonuclease HII family protein [Trichomonas vaginalis G3]
gi|121911144|gb|EAY15981.1| ribonuclease HII family protein [Trichomonas vaginalis G3]
Length = 269
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 95/155 (61%), Gaps = 6/155 (3%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
MGIDEAGRGP LGPMVY P Y+ + DSK L E+REE+F+++K VG
Sbjct: 22 MGIDEAGRGPALGPMVYSGAIAPNKYEWPK---DVDDSKKLTAEQREEIFDEIK-KLPVG 77
Query: 77 WAVDIIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+AV +I E+SAK L I+LN +SH +A L+ L+ G+ + +Y+DTVG AE
Sbjct: 78 FAVRVISAEEISAKQTALVNPPISLNTVSHHAARDLVQAFLDKGLNIKALYVDTVGIAES 137
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
YQ L +FP+IK V KAD+ Y VV ASI AK
Sbjct: 138 YQDWLQDKFPNIKVTVRAKADATYKVVGAASICAK 172
>gi|50310553|ref|XP_455296.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644432|emb|CAG98004.1| KLLA0F04774p [Kluyveromyces lactis]
Length = 304
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 93/156 (59%), Gaps = 6/156 (3%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQ-TLATLNFADSKTLKEEKREELFEDL 69
+++ I+G+DEAGRGPV+GPMVYG YC Y++ + F DSK L + R++LF +
Sbjct: 43 STDEIILGVDEAGRGPVMGPMVYGISYCTRQYEKDVICKYGFDDSKKLTDPVRQKLFAMI 102
Query: 70 KVN--DSVGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGILLTEV 124
D VG+A I ++S+ M + NLNE +HD I LI VL G+ + V
Sbjct: 103 YGGEIDGVGYATTSITACDISSGMFRFPPEKNYNLNEQAHDVTIALIDDVLKSGVKVGHV 162
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPV 160
Y+DTVG YQ KL FP KF V+KKADS+YP+
Sbjct: 163 YVDTVGPPISYQKKLESIFPQCKFTVAKKADSIYPI 198
>gi|83770969|dbj|BAE61102.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391871226|gb|EIT80391.1| ribonuclease HI [Aspergillus oryzae 3.042]
Length = 363
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 95/164 (57%), Gaps = 10/164 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL---- 69
++G+DEAGRGPVLGPMVY Y P +L NF DSK L R L L
Sbjct: 80 VLGVDEAGRGPVLGPMVYSAFYLPHDLHHSLLARDYNFNDSKVLTPGVRANLMRLLCTPG 139
Query: 70 -KVNDSVGWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVL-NIGILLTEVY 125
+ +S GWA ++ R++S+ M+ NLN + D+ + LI ++ + + EVY
Sbjct: 140 TPLFESCGWATKLLSARDISSGMMRPGAGVYNLNAQAMDATVELIREIVEGRKVDIREVY 199
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+DT+G+ YQ KL + FPS+K V+KKADSLYP VS AS+ AK
Sbjct: 200 IDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAK 243
>gi|317137770|ref|XP_001727941.2| ribonuclease H2 subunit A [Aspergillus oryzae RIB40]
Length = 351
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 95/164 (57%), Gaps = 10/164 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL---- 69
++G+DEAGRGPVLGPMVY Y P +L NF DSK L R L L
Sbjct: 68 VLGVDEAGRGPVLGPMVYSAFYLPHDLHHSLLARDYNFNDSKVLTPGVRANLMRLLCTPG 127
Query: 70 -KVNDSVGWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVL-NIGILLTEVY 125
+ +S GWA ++ R++S+ M+ NLN + D+ + LI ++ + + EVY
Sbjct: 128 TPLFESCGWATKLLSARDISSGMMRPGAGVYNLNAQAMDATVELIREIVEGRKVDIREVY 187
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+DT+G+ YQ KL + FPS+K V+KKADSLYP VS AS+ AK
Sbjct: 188 IDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAK 231
>gi|159130978|gb|EDP56091.1| ribonuclease HI large subunit [Aspergillus fumigatus A1163]
Length = 363
Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 97/164 (59%), Gaps = 10/164 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL---- 69
++G+DEAGRGPVLGPMVY Y P + +L +F DSK L R L L
Sbjct: 78 VLGVDEAGRGPVLGPMVYSAFYIPHTLHHSLLARDYSFNDSKVLTPGVRANLMRLLCTAG 137
Query: 70 -KVNDSVGWAVDIIDPRELSAKML--NKNKINLNEISHDSAIGLITRVLN-IGILLTEVY 125
++ S GWA ++ R++SA M+ NLN + D+ + +I ++ + + EVY
Sbjct: 138 NPLHASCGWATKVLSARDISAGMMRPTSGAYNLNAQAMDATVEIIRGIVEERRVDIREVY 197
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+DT+G+ YQ KL + FP++K V+KKAD+LYP VS AS+VAK
Sbjct: 198 IDTIGNPATYQQKLERIFPTLKITVAKKADALYPCVSAASVVAK 241
>gi|70991314|ref|XP_750506.1| ribonuclease HI large subunit [Aspergillus fumigatus Af293]
gi|66848138|gb|EAL88468.1| ribonuclease HI large subunit [Aspergillus fumigatus Af293]
Length = 363
Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 97/164 (59%), Gaps = 10/164 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL---- 69
++G+DEAGRGPVLGPMVY Y P + +L +F DSK L R L L
Sbjct: 78 VLGVDEAGRGPVLGPMVYSAFYIPHTLHHSLLARDYSFNDSKVLTPGVRANLMRLLCTAG 137
Query: 70 -KVNDSVGWAVDIIDPRELSAKML--NKNKINLNEISHDSAIGLITRVLN-IGILLTEVY 125
++ S GWA ++ R++SA M+ NLN + D+ + +I ++ + + EVY
Sbjct: 138 NPLHASCGWATKVLSARDISAGMMRPTSGAYNLNAQAMDATVEIIRGIVEERRVDIREVY 197
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+DT+G+ YQ KL + FP++K V+KKAD+LYP VS AS+VAK
Sbjct: 198 IDTIGNPATYQQKLERIFPTLKITVAKKADALYPCVSAASVVAK 241
>gi|70926382|ref|XP_735739.1| ribonuclease H1 large subunit [Plasmodium chabaudi chabaudi]
gi|56509666|emb|CAH81806.1| ribonuclease H1 large subunit, putative [Plasmodium chabaudi
chabaudi]
Length = 133
Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 85/127 (66%), Gaps = 5/127 (3%)
Query: 7 LPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF 66
L ++ + +GIDEAGRGPVLGPMVY YC ++ L + DSK + E RE++F
Sbjct: 9 LYEFGNEEVRLGIDEAGRGPVLGPMVYSGFYCKKEDEKLLKEMKIDDSKKISENDREKMF 68
Query: 67 EDLKVNDSV---GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
K+N+S GW V ++ P+++SAKML K K NLNEISHD+AI +I VL+ G LTE
Sbjct: 69 --YKLNNSTLPFGWRVHVLMPQDISAKMLKKQKYNLNEISHDTAISIIQHVLSRGCNLTE 126
Query: 124 VYLDTVG 130
V++DTVG
Sbjct: 127 VFVDTVG 133
>gi|119496273|ref|XP_001264910.1| ribonuclease HI large subunit [Neosartorya fischeri NRRL 181]
gi|119413072|gb|EAW23013.1| ribonuclease HI large subunit [Neosartorya fischeri NRRL 181]
Length = 363
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 97/164 (59%), Gaps = 10/164 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL---- 69
++G+DEAGRGPVLGPMVY Y P + +L +F DSK L R L L
Sbjct: 78 VLGVDEAGRGPVLGPMVYSAFYIPHTLHHSLLARDYSFNDSKVLTPGVRANLMRLLCTAG 137
Query: 70 -KVNDSVGWAVDIIDPRELSAKMLN--KNKINLNEISHDSAIGLITRVLN-IGILLTEVY 125
++ S GWA ++ R++SA M+ NLN + D+ + +I ++ + + EVY
Sbjct: 138 NPLHASCGWATKVLSARDISAGMMRPASGAYNLNAQAMDATVEIIRGIVEERRVDIREVY 197
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+DT+G+ YQ KL + FP++K V+KKAD+LYP VS AS+VAK
Sbjct: 198 IDTIGNPATYQQKLERIFPTLKITVAKKADALYPCVSAASVVAK 241
>gi|440795142|gb|ELR16278.1| ribonuclease HII, putative [Acanthamoeba castellanii str. Neff]
Length = 241
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 90/155 (58%), Gaps = 6/155 (3%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
MGIDEAGRGP +GPM+Y C YCP Q+ + DSK +K +R+ LF L + VG
Sbjct: 1 MGIDEAGRGPTMGPMIYACAYCPVDKQEAYRKRGYRDSKDVKPAERDRLFAALLEDPDVG 60
Query: 77 WAVDIIDPRELS-AKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ I E+S A + NLNE+S+D A GL VL GI L E+Y+D +G+
Sbjct: 61 FRSGIASAEEISNANYSHTENRNLNEVSYDPATGLNRDVLATGINLAELYVDALGNC--- 117
Query: 136 QAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAK 169
A L + FPSI V+ KAD YP+VS ASIV K
Sbjct: 118 -ATLQRLFPSICTIVLESKADVNYPIVSVASIVTK 151
>gi|183232283|ref|XP_655093.2| RNase HI large subunit [Entamoeba histolytica HM-1:IMSS]
gi|169802113|gb|EAL49706.2| RNase HI large subunit, putative [Entamoeba histolytica HM-1:IMSS]
gi|449708100|gb|EMD47623.1| rnase HI large subunit, putative [Entamoeba histolytica KU27]
Length = 270
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 94/157 (59%), Gaps = 6/157 (3%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRGPVLGPMVY + + + ++T+ F DSK L RE+LF D+K + G
Sbjct: 17 IGIDEAGRGPVLGPMVYSAFFT--TNTEVISTMGFHDSKILSRTMREKLFTDIKESGVCG 74
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL-LTEVYLDTVGDAEKY 135
++ I+ P +S M K++LNEI+ + +I +++ + +Y DTVG ++KY
Sbjct: 75 FSTRILTPSYISQMMCGPQKVSLNEIAFSAVRDIIHQIIRTSQRKIVHIYCDTVGPSKKY 134
Query: 136 QAKLSQRFPSIKF---VVSKKADSLYPVVSGASIVAK 169
QA ++ F +K V KAD LYPVVS ASI AK
Sbjct: 135 QAMIANEFKEVKLSQITVCPKADGLYPVVSAASICAK 171
>gi|407042272|gb|EKE41240.1| ribonuclease HII protein [Entamoeba nuttalli P19]
Length = 270
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 94/157 (59%), Gaps = 6/157 (3%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRGPVLGPMVY + + + ++T+ F DSK L RE+LF D+K + G
Sbjct: 17 IGIDEAGRGPVLGPMVYSAFFT--TNTEVISTMGFHDSKILSRTMREKLFTDIKESAVCG 74
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL-LTEVYLDTVGDAEKY 135
++ I+ P +S M K++LNEI+ + +I +++ + +Y DTVG ++KY
Sbjct: 75 FSTRILTPSYISQMMCGPQKVSLNEIAFSAVRDIIHQIIRTSQRKIVHIYCDTVGPSKKY 134
Query: 136 QAKLSQRFPSIKF---VVSKKADSLYPVVSGASIVAK 169
QA ++ F +K V KAD LYPVVS ASI AK
Sbjct: 135 QAMIANEFKEVKLSQITVCPKADGLYPVVSAASICAK 171
>gi|440299535|gb|ELP92087.1| ribonuclease H2 subunit A, putative [Entamoeba invadens IP1]
Length = 274
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 99/157 (63%), Gaps = 6/157 (3%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRGPV+GPMVY + + ++ + F DSK L + +RE L+ D+ + G
Sbjct: 22 IGIDEAGRGPVVGPMVYTAFFT--TDADEVSDMGFKDSKVLNKAQRESLYSDIHNSPFCG 79
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL-LTEVYLDTVGDAEKY 135
++ +++ P +++ KM KI+LNE++ + +I+R+LNI + V++DTVG KY
Sbjct: 80 YSSEVLTPSDINKKMCQPLKISLNEVAFSAVRTIISRILNITQRGVKGVFVDTVGPPAKY 139
Query: 136 QAKLSQRFPSIK---FVVSKKADSLYPVVSGASIVAK 169
+A ++ FP I V KAD+ YPVVSGASIVAK
Sbjct: 140 KAMIAHSFPQIDPECITVCSKADAKYPVVSGASIVAK 176
>gi|157876580|ref|XP_001686636.1| putative ribonuclease H [Leishmania major strain Friedlin]
gi|23477654|gb|AAN34793.1| ribonuclease H(35) [Leishmania major]
gi|56713264|gb|AAW23359.1| ribonuclease HIIB [Leishmania major]
gi|68129711|emb|CAJ09017.1| putative ribonuclease H [Leishmania major strain Friedlin]
Length = 301
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 94/156 (60%), Gaps = 2/156 (1%)
Query: 16 IMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++GIDEAGRGPV+GPMVY G + + + + ADSK L E +R + L+ +
Sbjct: 46 VLGIDEAGRGPVIGPMVYTGAVISLGEHDDLVRLCHVADSKMLNERRRLASLQQLRQLKT 105
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR-VLNIGILLTEVYLDTVGDAE 133
+ P E+S M ++ N N +SH++AI +I+ L L Y+DTVG E
Sbjct: 106 FRSFTVCVSPEEISKTMTGRSGRNSNTLSHETAIQIISEATLASAGKLCAAYVDTVGPPE 165
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
YQA+L+ RFP ++ V+KKADS++P+VS ASIVAK
Sbjct: 166 TYQARLAGRFPHLRVTVAKKADSIFPIVSAASIVAK 201
>gi|149037819|gb|EDL92179.1| ribonuclease H2, large subunit, isoform CRA_c [Rattus norvegicus]
gi|149037822|gb|EDL92182.1| ribonuclease H2, large subunit, isoform CRA_c [Rattus norvegicus]
Length = 158
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 75/111 (67%), Gaps = 1/111 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
D VGWA+DI+ P +S ML + K NLN +SHD+A GLI ++ + +T+
Sbjct: 88 DFVGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVTQ 138
>gi|389603175|ref|XP_001568699.2| putative ribonuclease H [Leishmania braziliensis MHOM/BR/75/M2904]
gi|322505755|emb|CAM43828.2| putative ribonuclease H [Leishmania braziliensis MHOM/BR/75/M2904]
Length = 318
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 94/156 (60%), Gaps = 2/156 (1%)
Query: 16 IMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+GIDEAGRGPV+GPMVY G + + + + ADSK L E R + L+ +
Sbjct: 46 ILGIDEAGRGPVIGPMVYTGAVISLGEHDDLVRLCHVADSKILDERHRLASLQQLRQLKT 105
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR-VLNIGILLTEVYLDTVGDAE 133
+ P E+S+ M ++ NLN +SH++A+ +I+ L L Y+DTVG +
Sbjct: 106 FRSFTVCVSPEEISSTMTGRSGRNLNTLSHETAVHIISEATLASAGKLCAAYVDTVGPPD 165
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
YQA+L+ RFP ++ V+KKADS +P+VS ASIVAK
Sbjct: 166 TYQARLAGRFPHLRVTVAKKADSKFPIVSAASIVAK 201
>gi|183231893|ref|XP_001913636.1| ribonuclease H2 subunit A [Entamoeba histolytica HM-1:IMSS]
gi|169802278|gb|EDS89588.1| ribonuclease H2 subunit A, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 354
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 94/157 (59%), Gaps = 6/157 (3%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRGPVLGPMVY + + + ++T+ F DSK L RE+LF D+K + G
Sbjct: 17 IGIDEAGRGPVLGPMVYSAFFTTNT--EVISTMGFHDSKILSRTMREKLFTDIKESGVCG 74
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL-LTEVYLDTVGDAEKY 135
++ I+ P +S M K++LNEI+ + +I +++ + +Y DTVG ++KY
Sbjct: 75 FSTRILTPSYISQMMCGPQKVSLNEIAFSAVRDIIHQIIRTSQRKIVHIYCDTVGPSKKY 134
Query: 136 QAKLSQRFPSIKF---VVSKKADSLYPVVSGASIVAK 169
QA ++ F +K V KAD LYPVVS ASI AK
Sbjct: 135 QAMIANEFKEVKLSQITVCPKADGLYPVVSAASICAK 171
>gi|167378158|ref|XP_001734698.1| ribonuclease H2 subunit A [Entamoeba dispar SAW760]
gi|165903720|gb|EDR29164.1| ribonuclease H2 subunit A, putative [Entamoeba dispar SAW760]
Length = 270
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 93/157 (59%), Gaps = 6/157 (3%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRGPVLGPMVY + + + ++T+ F DSK L RE+LF D+K + G
Sbjct: 17 IGIDEAGRGPVLGPMVYSAFFT--TNTEIISTMGFHDSKILSRTMREKLFSDIKESAVCG 74
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL-LTEVYLDTVGDAEKY 135
++ I+ P +S M K++LNEI+ + +I +++ I + +Y DTVG + KY
Sbjct: 75 FSTRILTPSYISHLMCGPQKVSLNEIAFGAVRDIIHQIIRISQRKIVHIYCDTVGPSGKY 134
Query: 136 QAKLSQRFPSIKF---VVSKKADSLYPVVSGASIVAK 169
Q ++ F IK V KAD LYPVVS ASI AK
Sbjct: 135 QMMIANEFKDIKLNQITVCPKADGLYPVVSAASICAK 171
>gi|121702279|ref|XP_001269404.1| ribonuclease HI large subunit [Aspergillus clavatus NRRL 1]
gi|119397547|gb|EAW07978.1| ribonuclease HI large subunit [Aspergillus clavatus NRRL 1]
Length = 362
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 96/164 (58%), Gaps = 10/164 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL---- 69
++G+DEAGRGPVLGPMVY Y P + +L +F DSK L R L L
Sbjct: 79 VLGVDEAGRGPVLGPMVYSAFYLPHTLHHSLLARDYSFDDSKVLTAGVRANLMRLLCTAG 138
Query: 70 -KVNDSVGWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVLN-IGILLTEVY 125
++ S GWA ++ R++S+ M+ NLN + D+ + +I ++ + + EVY
Sbjct: 139 NPLHASCGWATKLLSARDISSGMMRPGSGVYNLNAQAMDATVEIIRGIVEERKVDVREVY 198
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+DT+G+ YQ KL + FP++K V+KKADSLYP VS AS+ AK
Sbjct: 199 IDTIGNPATYQQKLERIFPTLKITVAKKADSLYPCVSAASVAAK 242
>gi|167394469|ref|XP_001740978.1| ribonuclease H2 subunit A [Entamoeba dispar SAW760]
gi|165894666|gb|EDR22579.1| ribonuclease H2 subunit A, putative [Entamoeba dispar SAW760]
Length = 270
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 93/157 (59%), Gaps = 6/157 (3%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRGPVLGPMVY + + + ++T+ F DSK L RE+LF D+K + G
Sbjct: 17 IGIDEAGRGPVLGPMVYSAFFT--TNTEIISTMGFHDSKILSRTMREKLFSDIKESAVCG 74
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL-LTEVYLDTVGDAEKY 135
++ I+ P +S M K++LNEI+ + +I +++ I + +Y DTVG + KY
Sbjct: 75 FSTRILTPSYISHLMCGPQKVSLNEIAFGAVRDIIHQIIRINQRKIVHIYCDTVGPSGKY 134
Query: 136 QAKLSQRFPSIKF---VVSKKADSLYPVVSGASIVAK 169
Q ++ F IK V KAD LYPVVS ASI AK
Sbjct: 135 QMMIANEFKDIKLNQITVCPKADGLYPVVSAASICAK 171
>gi|145479147|ref|XP_001425596.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124392667|emb|CAK58198.1| unnamed protein product [Paramecium tetraurelia]
Length = 297
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 97/163 (59%), Gaps = 13/163 (7%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA-TLNFADSKTLKEEKREELFEDLKVNDSV 75
+GIDEAGRGPVLGPM+Y Y P Y + ++ T F DSK + E R++LF+ L +
Sbjct: 34 LGIDEAGRGPVLGPMLYASCYWPTKYHKLISETCKFVDSKQINEAARDKLFDVLT---QL 90
Query: 76 GWAVDIIDPRELSAKMLNKNK-----INLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
V + REL+A+ L+KN+ INLN+ISH++A LI + G +TE+++DTVG
Sbjct: 91 KGKVLTFETRELTAEYLSKNQLAHLTINLNDISHNTAAELIQSAIQKGYKITEIFVDTVG 150
Query: 131 DAEKY----QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+ Y Q KL + VV +KADS Y VS ASI AK
Sbjct: 151 PKQTYKNFLQGKLQEIGKEANIVVEEKADSKYANVSAASICAK 193
>gi|342184180|emb|CCC93661.1| putative ribonuclease H [Trypanosoma congolense IL3000]
Length = 322
Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 102/171 (59%), Gaps = 5/171 (2%)
Query: 13 NPCIMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
N ++GIDEAGRGPV+GPMVY G + + + + DSK L E++R+ + L
Sbjct: 38 NNMVLGIDEAGRGPVIGPMVYAGAMIALHEHDRLVDYCGANDSKVLSEDQRKGVASKLNE 97
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGI-LLTEVYLDTVG 130
+ ++ P E++A M + NLN +SH A+ +I+++ G+ +L ++DTVG
Sbjct: 98 LKTFRTCTVVVTPDEIAAAMTGIHGTNLNTLSHQVAMSIISKLTLEGMGMLCAAFIDTVG 157
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK---RSNFERMDI 178
E YQ KLS RFP ++ VSKKA+ +P+V+ AS+VAK S+ ER+ I
Sbjct: 158 PPETYQQKLSGRFPHLRITVSKKAELKFPIVAAASVVAKLERDSHIERLGI 208
>gi|449017231|dbj|BAM80633.1| probable ribonuclease HI large subunit [Cyanidioschyzon merolae
strain 10D]
Length = 328
Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 87/145 (60%), Gaps = 2/145 (1%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-DS 74
IMGIDEAGRGPVLGP+VY C C Q L DSK L + RE +F+ L N D
Sbjct: 9 IMGIDEAGRGPVLGPLVYACCACQAGRLQELEATGVRDSKKLSAQCRERIFQTLGENADW 68
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ I+ P LSA ML + ++NLNE S+ + I L+ L+ G+ + +++DTVG+ +
Sbjct: 69 IYSRTRILSPEMLSATMLGRKRVNLNETSYAATISLVKDALSSGMFIEGLFVDTVGEPDA 128
Query: 135 YQAKLSQRFPSI-KFVVSKKADSLY 158
YQ +L + FP I + VV +A+S +
Sbjct: 129 YQMRLKRIFPKIPRIVVQSEAESRF 153
>gi|115385935|ref|XP_001209514.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114187961|gb|EAU29661.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 339
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 97/169 (57%), Gaps = 10/169 (5%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFED 68
+ N ++G+DEAGRGPVLGPMVY Y P +L +F DSK L R L
Sbjct: 54 SQNYFVLGVDEAGRGPVLGPMVYSAFYLPHDLHHSLLAQKYSFDDSKVLTPAVRLNLMRT 113
Query: 69 L-----KVNDSVGWAVDIIDPRELSAKMLN--KNKINLNEISHDSAIGLITRVLN-IGIL 120
L + +S GWA ++ +++S+ M+ NLN + D+ I +I ++ +
Sbjct: 114 LCTPGTPLFESCGWATKLLTAQDISSGMMRPAAAAYNLNAQAMDATIEIIRGIVEERKVN 173
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+ EVY+DT+G+ YQ KL + FP++K V+KKADSLYP VS AS+ AK
Sbjct: 174 VREVYIDTIGNPASYQQKLERIFPTLKITVAKKADSLYPCVSAASVAAK 222
>gi|407397482|gb|EKF27762.1| ribonuclease H, putative [Trypanosoma cruzi marinkellei]
Length = 289
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 91/150 (60%), Gaps = 2/150 (1%)
Query: 13 NPCIMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
N ++GIDEAGRGPV+GPMVY G + + + L DSK L E +R+++ L+
Sbjct: 38 NHMVLGIDEAGRGPVVGPMVYTGAMIALHEHDRLLEYCGVNDSKLLGENQRKDVLCKLQK 97
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR-VLNIGILLTEVYLDTVG 130
+ ++ P E++A M + NLN +SHD+AIG+I++ L +L Y+DTVG
Sbjct: 98 LKTFSTFTVVVTPAEIAAAMTGIHGKNLNTLSHDTAIGIISKATLEATGMLCGAYIDTVG 157
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPV 160
E YQ +LS RFP ++ V+KKA++ +P+
Sbjct: 158 PPESYQQRLSGRFPHLRITVAKKAETKFPI 187
>gi|148673842|gb|EDL05789.1| mCG129830, isoform CRA_b [Mus musculus]
Length = 142
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-DS 74
++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ + D
Sbjct: 1 VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDF 60
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ + +T+
Sbjct: 61 VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQ 109
>gi|340057120|emb|CCC51462.1| putative ribonuclease H [Trypanosoma vivax Y486]
Length = 378
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 90/147 (61%), Gaps = 2/147 (1%)
Query: 16 IMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
+MGIDEAGRGP++GPMVY G + + L DSK L E +RE + + L +
Sbjct: 97 VMGIDEAGRGPIIGPMVYVGAMIALHEHDLLLTHCGANDSKVLDENQREVVLQKLSELKT 156
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRV-LNIGILLTEVYLDTVGDAE 133
+I P E++A M + INLN +SH++A +I+++ L +L Y+DTVG E
Sbjct: 157 FRTFTIVITPDEIAAAMTGIHGINLNTLSHNAATSIISQLTLQAAGMLCAAYVDTVGPPE 216
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPV 160
KY++KLS RFP ++ VSK+A+S +P+
Sbjct: 217 KYESKLSGRFPHLRVKVSKQAESKFPI 243
>gi|71747398|ref|XP_822754.1| ribonuclease H [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|70832422|gb|EAN77926.1| ribonuclease H, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 326
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 105/173 (60%), Gaps = 5/173 (2%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
+ N +MGIDEAGRGPV+GPMVY G + + + + DSK L E++R+ + L
Sbjct: 36 SENHLVMGIDEAGRGPVVGPMVYTGAMIALHEHDRLVDYCGANDSKVLNEDQRKSVVSKL 95
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGI-LLTEVYLDT 128
+ ++ P E++A M + NLN +SH +AI +I+++ G+ +LT Y+DT
Sbjct: 96 HELATFRTFTVVVTPDEIAAAMTGAHGTNLNTLSHQTAISIISKLTLEGMGMLTAAYVDT 155
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVA---KRSNFERMDI 178
VG E YQ KLS RFP ++ V+KKA+ +P+V+ AS+VA + S+ ER+ I
Sbjct: 156 VGPPESYQQKLSGRFPHLRVTVAKKAEIKFPIVAAASVVAKVERDSHIERLGI 208
>gi|358336633|dbj|GAA55095.1| ribonuclease H2 subunit A [Clonorchis sinensis]
Length = 296
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
Query: 50 NFADSKTLKEEKREELFED-LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAI 108
+ +DSKTL E +RE L L+ D + AV +I PR ++ ML + K +LN ISHD+AI
Sbjct: 43 HISDSKTLTEHQRESLLTRMLQHTDWLVGAVRVISPRFITENMLGRCKTSLNVISHDAAI 102
Query: 109 GLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVA 168
GLI L+ G+ + EVY+DTVG AE Y+AKL FP +K V KAD YP+VS ASI A
Sbjct: 103 GLIQAALDKGVNVKEVYVDTVGKAEHYEAKLQTLFPKLKICVESKADDTYPIVSAASIFA 162
Query: 169 K 169
K
Sbjct: 163 K 163
>gi|67480158|gb|AAY67993.1| ribonuclease HI large subunit [Oxyuranus scutellatus scutellatus]
Length = 211
Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 67/95 (70%)
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
VGWA+ I+ P +S M + K NLN +SHD+AIGLI L+ G+ L EV++DTVG AEK
Sbjct: 1 VGWALHILSPNFISTSMQRRTKYNLNALSHDTAIGLIQHALDSGVQLAEVFVDTVGPAEK 60
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
YQ KL Q+FP ++ V KADSL+P VS ASI AK
Sbjct: 61 YQEKLKQQFPELEVTVRAKADSLFPTVSAASICAK 95
>gi|261332533|emb|CBH15528.1| ribonuclease H, putative [Trypanosoma brucei gambiense DAL972]
Length = 326
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 105/173 (60%), Gaps = 5/173 (2%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
+ N +MGIDEAGRGPV+GPMVY G + + + + DSK L E++R+ + L
Sbjct: 36 SENHLVMGIDEAGRGPVVGPMVYTGAMIALHEHDRLVDYCGANDSKVLNEDQRKSVVSKL 95
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGI-LLTEVYLDT 128
+ ++ P E++A M + NLN +SH +AI +I+++ G+ +LT Y+DT
Sbjct: 96 HELATFRTFTVVVTPDEIAAAMTGVHGTNLNTLSHQTAISIISKLTLEGMGMLTAAYVDT 155
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVA---KRSNFERMDI 178
VG E YQ KLS RFP ++ V+KKA+ +P+V+ AS+VA + S+ ER+ I
Sbjct: 156 VGPPESYQQKLSGRFPHLRVTVAKKAEIKFPIVAAASVVAKVERDSHIERLGI 208
>gi|71408510|ref|XP_806655.1| ribonuclease H [Trypanosoma cruzi strain CL Brener]
gi|70870462|gb|EAN84804.1| ribonuclease H, putative [Trypanosoma cruzi]
Length = 324
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 90/150 (60%), Gaps = 2/150 (1%)
Query: 13 NPCIMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
N ++GIDEAGRGPV+GPMVY G + + + L DSK L E +R+++ L+
Sbjct: 38 NHMVLGIDEAGRGPVIGPMVYTGAMIALHEHDRLLEYCGVNDSKLLGENQRKDVLCKLQE 97
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR-VLNIGILLTEVYLDTVG 130
+ ++ P E++A M + NLN +SHD+AI +I++ L +L Y+DTVG
Sbjct: 98 LKTFSTFTVVVTPAEIAAAMTGIHGKNLNTLSHDTAIAIISKATLEATGMLCGAYIDTVG 157
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPV 160
E YQ +LS RFP ++ V+KKA++ +P+
Sbjct: 158 PPESYQQRLSGRFPHLRITVAKKAETKFPI 187
>gi|407835034|gb|EKF99119.1| ribonuclease H, putative [Trypanosoma cruzi]
Length = 324
Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 90/150 (60%), Gaps = 2/150 (1%)
Query: 13 NPCIMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
N ++GIDEAGRGPV+GPMVY G + + + L DSK L E +R+++ L+
Sbjct: 38 NHMVLGIDEAGRGPVIGPMVYTGAMIALHEHDRLLEYCGVNDSKLLGENQRKDVLCKLQK 97
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR-VLNIGILLTEVYLDTVG 130
+ ++ P E++A M + NLN +SHD+AI +I++ L +L Y+DTVG
Sbjct: 98 LKTFSTFTVVVTPAEIAAAMTGIHGKNLNTLSHDTAIAIISKATLEATGMLCGAYIDTVG 157
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPV 160
E YQ +LS RFP ++ V+KKA++ +P+
Sbjct: 158 PPESYQQRLSGRFPHLRITVAKKAETKFPI 187
>gi|317765021|ref|NP_001187891.1| ribonuclease h2 subunit a [Ictalurus punctatus]
gi|308324252|gb|ADO29261.1| ribonuclease h2 subunit a [Ictalurus punctatus]
Length = 108
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 71/107 (66%), Gaps = 1/107 (0%)
Query: 31 MVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVNDSVGWAVDIIDPRELSA 89
MVYG +CP S ++ L L ADSKTL E +RE LF L K VGWA+ I+ P +S
Sbjct: 1 MVYGICFCPVSRKENLKNLKVADSKTLSEAERENLFLKLDKAKGFVGWALQILSPNTIST 60
Query: 90 KMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
ML + K NLN +SHD+AIGL+ L+ G+ L EV++DTVG AEKY+
Sbjct: 61 SMLQRAKYNLNALSHDAAIGLVQYALDCGVQLKEVFVDTVGPAEKYE 107
>gi|71409033|ref|XP_806884.1| ribonuclease H [Trypanosoma cruzi strain CL Brener]
gi|70870756|gb|EAN85033.1| ribonuclease H, putative [Trypanosoma cruzi]
Length = 324
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 89/150 (59%), Gaps = 2/150 (1%)
Query: 13 NPCIMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
N ++GIDEAGRGPV+GPMVY G + + + L DSK L E +R+++ L+
Sbjct: 38 NHMVLGIDEAGRGPVIGPMVYTGAMIALHEHDRLLEYCGVNDSKLLGENQRKDVLCKLQK 97
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR-VLNIGILLTEVYLDTVG 130
+ + P E++A M + NLN +SHD+AI +I++ L +L Y+DTVG
Sbjct: 98 LKTFSTFTVFVTPAEIAAAMTGIHGKNLNTLSHDTAIAIISKATLEATGMLCGAYIDTVG 157
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPV 160
E YQ +LS RFP ++ V+KKA++ +P+
Sbjct: 158 PPESYQQRLSGRFPHLRITVAKKAETKFPI 187
>gi|429857939|gb|ELA32776.1| ribonuclease hi large subunit [Colletotrichum gloeosporioides Nara
gc5]
Length = 320
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 83/150 (55%), Gaps = 8/150 (5%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFEDL- 69
P +G+DEAGRGPVLGPMVYG + P L T +F DSK L R +L E L
Sbjct: 62 TPVCLGVDEAGRGPVLGPMVYGVFFLPIPLSDPLLRETHHFDDSKVLTPAVRSQLMEALC 121
Query: 70 ----KVNDSVGWAVDIIDPRELSAKMLNKNKI-NLNEISHDSAIGLITRVLNIGILLTEV 124
+ DS G+A+ + R+LS ML NLN + D+ + LI V G+ + E+
Sbjct: 122 TPGSDLFDSCGFAIRSLSARDLSTGMLRPGATYNLNAQAMDATVDLIKGVFARGVNVAEI 181
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKA 154
Y+DTVG YQAKL + FP+ K V++ A
Sbjct: 182 YVDTVGQPAAYQAKLQRFFPATKITVTRDA 211
>gi|396081059|gb|AFN82678.1| ribonuclease HII [Encephalitozoon romaleae SJ-2008]
Length = 239
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 94/158 (59%), Gaps = 6/158 (3%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
S ++GIDEAGRGPV+G MVYG L P S L + F DSK L +R F+ +K
Sbjct: 15 SEEVVVGIDEAGRGPVVGYMVYGALVAPKS---ALKSTGFKDSKVLTHAQRHTFFQTIK- 70
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
+G+ P ++ +M+ +L+EIS +S ++ + + VY+D +G+
Sbjct: 71 EKGLGYVYHCTHPDYIT-EMMQLGSTSLDEISVNSVFRILDEIKAKCENVEGVYVDALGN 129
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
EKY+A+L +++P + FVV K+ADS + +VSGASIVAK
Sbjct: 130 CEKYKARLKKKYPYM-FVVEKRADSRFQIVSGASIVAK 166
>gi|303388657|ref|XP_003072562.1| ribonuclease HII [Encephalitozoon intestinalis ATCC 50506]
gi|303301703|gb|ADM11202.1| ribonuclease HII [Encephalitozoon intestinalis ATCC 50506]
Length = 239
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 93/158 (58%), Gaps = 6/158 (3%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
S ++GIDEAGRGPV+G MVYG L S + TL F DSK L +R + F+ +K
Sbjct: 15 SEEVVVGIDEAGRGPVIGYMVYGAL---ISSRTTLENTGFRDSKVLTSGQRHDFFKMIK- 70
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
G+ P ++ +M+ +LNEIS S + ++ + + VY+D +GD
Sbjct: 71 ERGFGYVYHCTHPDYIT-EMMQVKSTSLNEISLISVLKILEEIKAKCKKVDTVYVDALGD 129
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
EKY+A+L + +P KFV+ +KADS + +VSGASIVAK
Sbjct: 130 CEKYKARLEEAYP-YKFVIEEKADSKFQIVSGASIVAK 166
>gi|146103342|ref|XP_001469539.1| putative ribonuclease H [Leishmania infantum JPCM5]
gi|134073909|emb|CAM72648.1| putative ribonuclease H [Leishmania infantum JPCM5]
Length = 316
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 90/156 (57%), Gaps = 2/156 (1%)
Query: 16 IMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++GI EAGRG V+GP+ Y G + + + + ADSKTL E +R + L++ +
Sbjct: 46 VLGIGEAGRGSVIGPIFYTGAVISLGEHDDLVRLCHVADSKTLDERRRLASLQQLRLLKT 105
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR-VLNIGILLTEVYLDTVGDAE 133
+ P E+S + ++ NLN +SH++AI +I++ L L Y+ T G
Sbjct: 106 FRSFTVCVSPEEISKTITGRSGRNLNTLSHETAIQIISKATLASAGKLCAAYVGTAGPPA 165
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
YQ +L+ RFP ++ V+KKADS +P+VS ASIVAK
Sbjct: 166 TYQERLAGRFPHLRVTVAKKADSQFPIVSAASIVAK 201
>gi|307103270|gb|EFN51532.1| hypothetical protein CHLNCDRAFT_140248 [Chlorella variabilis]
Length = 259
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 80/140 (57%), Gaps = 19/140 (13%)
Query: 31 MVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS-VGWAVDIIDPRELSA 89
MVYG + P S ++ L + FADSKTL EEKR+ LF ++ +G+ D++ +S
Sbjct: 1 MVYGLAWAPISRRKDLKAMGFADSKTLTEEKRDHLFGVIQAEGGMLGYQADVLSAAFISG 60
Query: 90 KMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFV 149
KML + +++LN ++ +S LI VL G +LSQRFP ++FV
Sbjct: 61 KMLGRERVSLNALAFESTCALIEAVLARG------------------ERLSQRFPGVQFV 102
Query: 150 VSKKADSLYPVVSGASIVAK 169
V KADS YP+VS ASIVAK
Sbjct: 103 VEAKADSTYPIVSAASIVAK 122
>gi|430812385|emb|CCJ30193.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 242
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 79/142 (55%), Gaps = 13/142 (9%)
Query: 31 MVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAK 90
MVY YCP +Y L F+DSKTL E+R++L + L RE+S
Sbjct: 1 MVYSVAYCPQNYANILKEYGFSDSKTLTPEQRKQLMQML------------FSAREISQG 48
Query: 91 MLNKN-KINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFV 149
ML + NLN +HD+ I L+ V + EVY+DTVG + YQ KL Q FP +
Sbjct: 49 MLRPDGSYNLNAQAHDTTIQLLFEVFKRNPGIKEVYVDTVGPSSSYQIKLQQLFPQTNVI 108
Query: 150 VSKKADSLYPVVSGASIVAKRS 171
V++KADS+YP+VS ASI AK S
Sbjct: 109 VTEKADSIYPIVSTASICAKVS 130
>gi|401825683|ref|XP_003886936.1| ribonuclease HII [Encephalitozoon hellem ATCC 50504]
gi|392998093|gb|AFM97955.1| ribonuclease HII [Encephalitozoon hellem ATCC 50504]
Length = 239
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 89/159 (55%), Gaps = 6/159 (3%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
S ++GIDEAGRGPV+G MVYG L P + L F DSK L +R F+ +K
Sbjct: 14 TSEEVVIGIDEAGRGPVIGYMVYGALVAP---KSALEATGFRDSKVLTPAQRHCFFQMIK 70
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
G+ P ++ +M+ L+ IS S ++ + + VY+DT+G
Sbjct: 71 -EKGFGYIYHCTHPDYIT-EMMQLRSTTLDRISIASVFQILDEIKTKCKKVEAVYVDTLG 128
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
D EKY++KL+ +P +FVV KKADS + VVSGASIVAK
Sbjct: 129 DCEKYKSKLNASYP-YRFVVEKKADSKFQVVSGASIVAK 166
>gi|159118024|ref|XP_001709231.1| Ribonuclease HI, large sub [Giardia lamblia ATCC 50803]
gi|157437347|gb|EDO81557.1| Ribonuclease HI, large sub [Giardia lamblia ATCC 50803]
Length = 243
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 87/158 (55%), Gaps = 5/158 (3%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQT--LATLNFADSKTLKEEKREELFEDLK--V 71
I+GIDEAGRGPV GP+VYG + P QT L L DSK L RE ++ L+
Sbjct: 2 IVGIDEAGRGPVCGPLVYGIAWMPAEVYQTGILEKLGVTDSKALSANTREHIYNRLQDLP 61
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
+ G I+ ++S ML +K +LN +S ++A L+ ++ I + VY+D VG
Sbjct: 62 KEDFGCNTAIVSADQISRAMLAPHKTSLNLLSFEAARSLLYQLF-ISHEIEHVYIDLVGP 120
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+Y A + + PSI + KAD+ YP+ ASIVAK
Sbjct: 121 ESQYAAYIRELMPSIALTICAKADAKYPITGAASIVAK 158
>gi|440789557|gb|ELR10864.1| ribonuclease HII, putative [Acanthamoeba castellanii str. Neff]
Length = 243
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 81/141 (57%), Gaps = 2/141 (1%)
Query: 31 MVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELS-A 89
M+Y C YCP Q+ + DSK +K +R+ LF L + VG+ I+ E+S A
Sbjct: 1 MIYACAYCPVDKQEAYRKRGYRDSKDVKPAERDRLFAALLEDPDVGFRSRIVSAEEISNA 60
Query: 90 KMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSI-KF 148
+ NLNE+S+D+A GL VL GI L E+Y+D +G+ Y+A L + FP I
Sbjct: 61 NYSHTENRNLNEVSYDAATGLNRDVLATGINLAELYVDALGNCATYRATLQRLFPGICTI 120
Query: 149 VVSKKADSLYPVVSGASIVAK 169
VV KAD YP+VS ASIVAK
Sbjct: 121 VVESKADVNYPIVSVASIVAK 141
>gi|313230305|emb|CBY08009.1| unnamed protein product [Oikopleura dioica]
Length = 195
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 84/141 (59%), Gaps = 2/141 (1%)
Query: 31 MVYGCLYCPCS-YQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSA 89
MVY +C + +Q+ DSK L+E RE + + + + +G+ ++ P +S
Sbjct: 1 MVYAAAFCAITEHQKVRDECGANDSKQLEEVDRERMLKSIDKSGWIGYTGVVLPPAYISK 60
Query: 90 KMLNKNKINLNEISHDSAIGLITRVLNI-GILLTEVYLDTVGDAEKYQAKLSQRFPSIKF 148
ML + K NLNE+SHD+AI +I R ++ GI + V++DTVG EKYQ KL + FP +
Sbjct: 61 SMLRRIKYNLNEMSHDTAISMIRRAIDYHGINVKSVFVDTVGKPEKYQDKLLRYFPQLSI 120
Query: 149 VVSKKADSLYPVVSGASIVAK 169
V KAD+ YP+V ASI+AK
Sbjct: 121 KVESKADATYPIVGAASIIAK 141
>gi|19173027|ref|NP_597578.1| BELONGS TO THE RIBONUCLEASE HII FAMILY [Encephalitozoon cuniculi
GB-M1]
gi|19168694|emb|CAD26213.1| BELONGS TO THE RIBONUCLEASE HII FAMILY [Encephalitozoon cuniculi
GB-M1]
gi|449329688|gb|AGE95958.1| ribonuclease HII family protein [Encephalitozoon cuniculi]
Length = 239
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 92/155 (59%), Gaps = 6/155 (3%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++GIDEAGRGPV+G MVYG L P + L + F DSK L +R F+ +K
Sbjct: 18 VVVGIDEAGRGPVVGYMVYGALVVP---RGVLEDVGFKDSKVLTPAQRYNFFQMIK-KKG 73
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
G+A P ++ +M+ ++LNE+S S + ++ V + + +Y+D +GD K
Sbjct: 74 FGYAYHCSHPDYIT-EMMQVRSVSLNEVSIGSVLRILDEVQSKCRRVDTIYVDALGDCRK 132
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
Y+ +L + +P +FVV ++ADS + VVSGASIVAK
Sbjct: 133 YKERLEKDYP-YRFVVEERADSKFQVVSGASIVAK 166
>gi|401419840|ref|XP_003874409.1| putative ribonuclease H [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322490645|emb|CBZ25907.1| putative ribonuclease H [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 316
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 87/156 (55%), Gaps = 2/156 (1%)
Query: 16 IMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++GIDEAGRG V+GPMVY G + + + + + AD K R + L+ +
Sbjct: 46 VLGIDEAGRGSVIGPMVYTGAVISLGEHDELVRLCHVADRKMPNVRPRLASLQKLRQLKT 105
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR-VLNIGILLTEVYLDTVGDAE 133
+ E+S M N NLN +SH++AI +I+ L L Y+DTVG
Sbjct: 106 FRSFTVFVSSEEISNTMAGHNGRNLNALSHETAIQIISEATLASAGKLCAAYVDTVGPPG 165
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
YQA+L+ RFP ++ V+KKA+S +P+VS AS+VAK
Sbjct: 166 TYQARLAGRFPHLRVTVAKKAESKFPIVSAASVVAK 201
>gi|253748461|gb|EET02569.1| Ribonuclease HI, large sub [Giardia intestinalis ATCC 50581]
Length = 243
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 84/158 (53%), Gaps = 5/158 (3%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQT--LATLNFADSKTLKEEKREELFEDLKV-- 71
I+GIDEAGRGPV GP+VYG + P QT L L DSK L + RE ++E L
Sbjct: 2 IVGIDEAGRGPVCGPLVYGIAWMPAKVYQTGILEKLGVNDSKALSADTREYIYEQLHALP 61
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
D G +I ++S ML K +LN +S ++A L+ +V + VY+D V
Sbjct: 62 KDDFGCNTAVISADQISRAMLAPRKTSLNLLSFEAARSLLYQVFT-SYEIEHVYIDLVSP 120
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+Y A + + P++ + KAD YP+ ASIVAK
Sbjct: 121 ESQYAAYIRELMPNLALTICAKADGKYPITGAASIVAK 158
>gi|398024050|ref|XP_003865186.1| ribonuclease H, putative [Leishmania donovani]
gi|322503423|emb|CBZ38508.1| ribonuclease H, putative [Leishmania donovani]
Length = 316
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 86/156 (55%), Gaps = 2/156 (1%)
Query: 16 IMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++GI EAGRG V+GP+ Y G + + + + ADSKTL E +R + L + +
Sbjct: 46 VLGIGEAGRGSVIGPIFYTGAVISLGEHDDLVQLCHVADSKTLDERRRLASLQQLHLLKT 105
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR-VLNIGILLTEVYLDTVGDAE 133
+ P E S + ++ NLN +SH++AI +I+ L L Y+ T G
Sbjct: 106 FRSFTVCVSPEEFSKTITGRSGRNLNTLSHETAIQIISEATLASAGKLCAAYVGTAGPPA 165
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
YQ L+ RFP ++ V+KKADS +P+VS ASIVAK
Sbjct: 166 TYQEGLAGRFPHLRVTVAKKADSQFPIVSAASIVAK 201
>gi|256078516|ref|XP_002575541.1| ribonuclease hi large subunit [Schistosoma mansoni]
gi|353232310|emb|CCD79665.1| putative ribonuclease hi large subunit [Schistosoma mansoni]
Length = 237
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 65/97 (67%)
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D + V +I P ++ KML+K+K +LN ISHDSAI LI VL+ G+ L EVY+DTVG A
Sbjct: 6 DWISAVVHVISPVYITEKMLDKSKTSLNVISHDSAIQLIQSVLDSGVNLVEVYVDTVGKA 65
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E Y+ KL FP +K V KAD YP+VS ASI AK
Sbjct: 66 EHYETKLQNLFPQLKIRVESKADDTYPIVSAASIFAK 102
>gi|308159908|gb|EFO62424.1| Ribonuclease HI, large sub [Giardia lamblia P15]
Length = 243
Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 84/158 (53%), Gaps = 5/158 (3%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQT--LATLNFADSKTLKEEKREELFEDLK--V 71
I+GIDEAGRGPV GP+VYG + P QT L L DSK L + RE ++ L
Sbjct: 2 IVGIDEAGRGPVCGPLVYGIAWMPAEVYQTGILEKLGVTDSKALSADAREHIYSKLHDLP 61
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
+ G I+ ++S ML +K +LN +S ++A L+ ++ + VY+D V
Sbjct: 62 KEDFGCNTAIVSADQISRAMLAPHKTSLNLLSFEAARSLLYQLFT-SYEIEHVYIDLVSP 120
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+Y + + P+I + KAD+ YP+ ASI+AK
Sbjct: 121 ESQYATYIHELMPNIALTICAKADAKYPITGAASIIAK 158
>gi|402466642|gb|EJW02092.1| ribonuclease HII [Edhazardia aedis USNM 41457]
Length = 250
Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 87/156 (55%), Gaps = 12/156 (7%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+G+DEAGRGP LG MVYG + F DSK + E KR E + ++
Sbjct: 30 VIIGVDEAGRGPALGHMVYGAMIAEEIKHP------FTDSKAIAESKRNEFLKIIE--KE 81
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL-LTEVYLDTVGDAE 133
+ I P+ +S +M ++ LN+I++ I ++ ++N + ++ VYLD +G
Sbjct: 82 YSYVYTAIHPQYISHQMSVES---LNDIAYKVVINILKTIVNSKLYNISCVYLDALGPNT 138
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
Y L + FP IKFVV KADS YPVV+GASIVAK
Sbjct: 139 TYMRILEKNFPKIKFVVECKADSTYPVVAGASIVAK 174
>gi|429962741|gb|ELA42285.1| ribonuclease HII [Vittaforma corneae ATCC 50505]
Length = 232
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 93/154 (60%), Gaps = 12/154 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGPV+GPMVYG LY + + ++ DSK L RE F++++
Sbjct: 20 MAGIDEAGRGPVVGPMVYG-LYVASENEIS----HYKDSKLLTPVAREHFFKNMR----- 69
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
++ I P +S+ M +NLNEI+ ++ I L+ +++ + VY+D +G+ E+Y
Sbjct: 70 NYSCYKIHPAYISSHM-EAGSMNLNEIAKEAVIYLLKDLVSKCPNVKTVYIDGLGNNEEY 128
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+ L + F S+ FV+ KADS Y VVSGASIVAK
Sbjct: 129 KKTLKKYF-SLNFVIENKADSKYQVVSGASIVAK 161
>gi|300702211|ref|XP_002995135.1| hypothetical protein NCER_102091 [Nosema ceranae BRL01]
gi|239603960|gb|EEQ81464.1| hypothetical protein NCER_102091 [Nosema ceranae BRL01]
Length = 235
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 86/154 (55%), Gaps = 10/154 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+G+DEAGRGPV+G MVY C ++ N DSK L E+ R ++F LK
Sbjct: 19 IVGVDEAGRGPVIGYMVY----CVMVFEVDNVPKNLKDSKMLTEKMRNDIFVTLK---DY 71
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+A + P ++ KML+ +NLN+IS ++ + L+ V N + +++D +G +K
Sbjct: 72 NYAYTALHPSYITTKMLSN--VNLNDISWNTVLNLLKLVCNAYTNIEGIFIDAIGTCDKL 129
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+ L K V KADS YPVVSGASIVAK
Sbjct: 130 KEFLELNIKH-KCTVESKADSKYPVVSGASIVAK 162
>gi|340501874|gb|EGR28608.1| ribonuclease large subunit, putative [Ichthyophthirius multifiliis]
Length = 258
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 79/172 (45%), Gaps = 54/172 (31%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLN-------FADSKTLKEEK 61
K S +MGIDEAGRGPV+GPMVYGC P + N F DSK L EK
Sbjct: 11 KKTSYEWVMGIDEAGRGPVIGPMVYGCCIWPITNTNNKKHENDKMENEGFNDSKALTIEK 70
Query: 62 REELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILL 121
RE LF A+M E+ D L
Sbjct: 71 REALF----------------------ARM--------QELQDDE-------------LH 87
Query: 122 TEVYLDTVGDAEKYQAKL----SQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
EVY+DTVG+ E YQ KL +++P IKF V +KAD+ +PVV ASI AK
Sbjct: 88 FEVYIDTVGNKETYQKKLENDYHKQYPQIKFCVKEKADADFPVVGAASICAK 139
>gi|47213806|emb|CAF92579.1| unnamed protein product [Tetraodon nigroviridis]
Length = 115
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVND 73
C +GIDEAGRGPVLGPMVYG +CP S + L L ADSKTL E +RE LFE L +
Sbjct: 29 CCLGIDEAGRGPVLGPMVYGICFCPISRKDELKDLKVADSKTLTEAEREALFEKLDEAKS 88
Query: 74 SVGWAVDIIDPRELSAKMLNK 94
+GWA+ ++ P +S ML +
Sbjct: 89 YIGWALQVLSPNTISTSMLQR 109
>gi|169806222|ref|XP_001827856.1| ribonuclease HII [Enterocytozoon bieneusi H348]
gi|161779304|gb|EDQ31327.1| ribonuclease HII [Enterocytozoon bieneusi H348]
Length = 252
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 87/161 (54%), Gaps = 10/161 (6%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K + I+GIDEAGRGPV+GPMVY Y + ++ + F DSK L R+ +
Sbjct: 8 KETTEEVIVGIDEAGRGPVIGPMVYAA-YVMHTNERRIR--QFIDSKQLTPNTRKNYYAT 64
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
+ + +A +I+P ++ M N K NLN+I+ ++ + L+ + N + VY+D
Sbjct: 65 M-----MNFAYIVIEPIYITTYMNNHIK-NLNQIAEEAVVQLLNEINNKCKNVKMVYIDA 118
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+G+ Y+ L F F + KAD+ Y VVS ASIVAK
Sbjct: 119 LGNVSNYKKNLQAHF-KFNFTIEAKADATYEVVSAASIVAK 158
>gi|324513411|gb|ADY45510.1| Ribonuclease H2 subunit A [Ascaris suum]
Length = 190
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 55/79 (69%)
Query: 91 MLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVV 150
ML + K +LNE+SH SAI LI L GI +TE+Y+DTVG YQAKL FP+I V
Sbjct: 1 MLRRCKYSLNELSHTSAINLIKFALENGINVTEIYVDTVGPKSTYQAKLQAHFPNISITV 60
Query: 151 SKKADSLYPVVSGASIVAK 169
++KADSL+PVV ASI AK
Sbjct: 61 TEKADSLFPVVGAASIAAK 79
>gi|320591391|gb|EFX03830.1| ribonuclease hi large subunit [Grosmannia clavigera kw1407]
Length = 304
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 68/124 (54%), Gaps = 8/124 (6%)
Query: 54 SKTLKEEKREELFEDL-----KVNDSVGWAVDIIDPRELSAKMLNKNKI---NLNEISHD 105
S L + R L L ++ S GWA + R++ A ML NLN + D
Sbjct: 44 SPVLSADTRASLMAALCRPGSSLHRSCGWATAALSARDIGADMLAPASAAGSNLNAQAAD 103
Query: 106 SAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGAS 165
+ + LI VL G+ +T+VY+DTVG YQ KL + FP ++ V+KKADSLYP VS AS
Sbjct: 104 ATVALIRGVLARGVRVTDVYVDTVGPPATYQKKLERVFPGLRITVAKKADSLYPCVSAAS 163
Query: 166 IVAK 169
+ AK
Sbjct: 164 VCAK 167
>gi|261402294|ref|YP_003246518.1| ribonuclease HII [Methanocaldococcus vulcanius M7]
gi|261369287|gb|ACX72036.1| ribonuclease HII [Methanocaldococcus vulcanius M7]
Length = 233
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 90/169 (53%), Gaps = 23/169 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+G+DEAGRGPVLGPMV + L L DSK L + KR +L + L + +
Sbjct: 5 IVGVDEAGRGPVLGPMVVCAFAIEKDREDLLRDLGVKDSKLLSKSKRSQLKKQL---ERI 61
Query: 76 GWAVDIIDPRELSAKMLNK--NKINLNEISHDS----AIGLITRVLNIGILLTEVYLDTV 129
G+ + + L+A +N NKINLNEI ++ +GLI LN+ E+Y+D
Sbjct: 62 GY----VKKKILTANEINTLMNKINLNEIEINAFSEVIMGLIND-LNLKDEYLEIYVDAC 116
Query: 130 G-DAEKYQAKLSQRFP--------SIKFVVSKKADSLYPVVSGASIVAK 169
+A+K++ +L R IK + KAD YP+VS ASI+AK
Sbjct: 117 STNAKKFENELKNRIKDIENQKNLKIKVIAEHKADLKYPIVSSASIIAK 165
>gi|16082425|ref|NP_394911.1| ribonuclease HII [Thermoplasma acidophilum DSM 1728]
gi|11387092|sp|P57673.1|RNH2_THEAC RecName: Full=Ribonuclease HII; Short=RNase HII
gi|10640800|emb|CAC12578.1| probable ribonuclease HII [Thermoplasma acidophilum]
Length = 212
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 82/152 (53%), Gaps = 14/152 (9%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGPV+GPMV + C S+ L + DSK L ++R ELFE + SV +
Sbjct: 9 GIDEAGRGPVIGPMVISLVCCDLSF---LKEIRVKDSKALTRKRRSELFEKIMGRCSVRY 65
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
I+ P++L+ M + +LN+I D + L+ ++ VY+D E+
Sbjct: 66 R--ILHPKDLNRMMAAE---SLNKIEEDEIVDLLRYADDL------VYIDCYDVIEERAQ 114
Query: 138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
++ Q + V KAD+++P VS ASIV+K
Sbjct: 115 EIIQMRSGRQVVCKHKADAIFPAVSAASIVSK 146
>gi|238490075|ref|XP_002376275.1| ribonuclease HI large subunit [Aspergillus flavus NRRL3357]
gi|220698663|gb|EED55003.1| ribonuclease HI large subunit [Aspergillus flavus NRRL3357]
Length = 273
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 63/100 (63%), Gaps = 3/100 (3%)
Query: 73 DSVGWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVL-NIGILLTEVYLDTV 129
+S GWA ++ R++S+ M+ NLN + D+ + LI ++ + + EVY+DT+
Sbjct: 54 ESCGWATKLLSARDISSGMMRPGAGVYNLNAQAMDATVELIREIVEGRKVDIREVYIDTI 113
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G+ YQ KL + FPS+K V+KKADSLYP VS AS+ AK
Sbjct: 114 GNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAK 153
>gi|150401039|ref|YP_001324805.1| ribonuclease HII [Methanococcus aeolicus Nankai-3]
gi|189043622|sp|A6UUM1.1|RNH2_META3 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|150013742|gb|ABR56193.1| ribonuclease HII [Methanococcus aeolicus Nankai-3]
Length = 277
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
+N I+G+DEAGRGPVLGPMV + + L+ DSK + +REELFE +
Sbjct: 18 NNKLIIGLDEAGRGPVLGPMVIALVKIKGQDLKNFEKLDIKDSKKHSKNRREELFEMIIN 77
Query: 72 NDSVGWAVDIIDPRELSAKMLNK--NKINLNEISHDSAIGLITRVL---------NIGIL 120
N V + + L AK ++K N INLN+I + LI VL N I
Sbjct: 78 NYDVRYEI-------LEAKTIDKLMNTINLNKIELMAFTKLINSVLKEEYPNYKENSKIQ 130
Query: 121 LT----EVYLDTVGDAEK-YQAKLSQRF-----PSIKFVVSKKADSLYPVVSGASIVAK 169
E+Y+D EK + ++ + +IK + KAD Y +VS ASI+AK
Sbjct: 131 TATPQIEIYIDACSSNEKAFANQIKSKLIVNDENNIKIIAEHKADENYKIVSAASIIAK 189
>gi|14324349|dbj|BAB59277.1| ribonuclease HII [Thermoplasma volcanium GSS1]
Length = 218
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 82/152 (53%), Gaps = 14/152 (9%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGPV+GPMV + C ++ L + DSK L ++RE LF+ K+ + +
Sbjct: 14 GIDEAGRGPVIGPMVISIV---CCKEEYLREIGVKDSKMLSRKRREYLFD--KITKNCAY 68
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
+ ++ P L+ M ++ +LN+I + + L+++ I VY+D E+
Sbjct: 69 SYVVVSPETLNKDMASE---SLNKIEENYILELLSKAEGI------VYIDCFDVIEERAE 119
Query: 138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
K + + V KADS+YP VS ASIV+K
Sbjct: 120 KYIREKSGKEVVCKHKADSIYPAVSAASIVSK 151
>gi|13540964|ref|NP_110652.1| ribonuclease HII [Thermoplasma volcanium GSS1]
Length = 219
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 82/152 (53%), Gaps = 14/152 (9%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGPV+GPMV + C ++ L + DSK L ++RE LF+ K+ + +
Sbjct: 15 GIDEAGRGPVIGPMVISIV---CCKEEYLREIGVKDSKMLSRKRREYLFD--KITKNCAY 69
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
+ ++ P L+ M ++ +LN+I + + L+++ I VY+D E+
Sbjct: 70 SYVVVSPETLNKDMASE---SLNKIEENYILELLSKAEGI------VYIDCFDVIEERAE 120
Query: 138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
K + + V KADS+YP VS ASIV+K
Sbjct: 121 KYIREKSGKEVVCKHKADSIYPAVSAASIVSK 152
>gi|34395818|sp|Q97CG6.2|RNH2_THEVO RecName: Full=Ribonuclease HII; Short=RNase HII
Length = 212
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 82/152 (53%), Gaps = 14/152 (9%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGPV+GPMV + C ++ L + DSK L ++RE LF+ K+ + +
Sbjct: 8 GIDEAGRGPVIGPMVISIV---CCKEEYLREIGVKDSKMLSRKRREYLFD--KITKNCAY 62
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
+ ++ P L+ M ++ +LN+I + + L+++ I VY+D E+
Sbjct: 63 SYVVVSPETLNKDMASE---SLNKIEENYILELLSKAEGI------VYIDCFDVIEERAE 113
Query: 138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
K + + V KADS+YP VS ASIV+K
Sbjct: 114 KYIREKSGKEVVCKHKADSIYPAVSAASIVSK 145
>gi|429964623|gb|ELA46621.1| ribonuclease HII [Vavraia culicis 'floridensis']
Length = 343
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 94/200 (47%), Gaps = 53/200 (26%)
Query: 17 MGIDEAGRGPVLGPMVYGCLY-----------CPCSYQQTLATLNFADSKTLKEEKREEL 65
+GIDEAGRGPVLG +VY L + + + + DSK L ++RE +
Sbjct: 82 IGIDEAGRGPVLGYLVYAALIIEEENDITNPTVSSALKDVHSDIKMCDSKLLLPKQRETI 141
Query: 66 FEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVL---------- 115
++ ++ S W + P +S +M ++ NLN+IS SA+ I R++
Sbjct: 142 YDQIRNTHSYVWYA--LHPEYISTEM---DRRNLNDIS-ISAVVYILRIIFEALSTENGN 195
Query: 116 -----------NIGILLTE---------------VYLDTVGDAEKYQAKLSQRFPSIKFV 149
N GI ++ V++D +G+ +KY L + FPS+ F
Sbjct: 196 KRRFWDCQERTNTGIGRSDEIGKNVSLRRDGVENVFIDALGNTDKYLQILQRHFPSVPFT 255
Query: 150 VSKKADSLYPVVSGASIVAK 169
+ KADS+Y V GASI+AK
Sbjct: 256 IKPKADSIYRCVGGASIIAK 275
>gi|45358937|ref|NP_988494.1| ribonuclease HII [Methanococcus maripaludis S2]
gi|73917612|sp|Q6LXH7.1|RNH2_METMP RecName: Full=Ribonuclease HII; Short=RNase HII
gi|45047803|emb|CAF30930.1| Ribonuclease HII [Methanococcus maripaludis S2]
Length = 242
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+G+DEAGRGPVLGPMV + L L DSK L ++KREEL+ + +N+
Sbjct: 23 IVGLDEAGRGPVLGPMVIASVKIDEKNLYKLNDLELKDSKQLSKKKREELY--IIINEMC 80
Query: 76 GWAVDIIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
+IDP + +M +N NKI L+ S S I NI I Y+D +E
Sbjct: 81 DVEKIVIDPETIDKQMEIINLNKIELSAFSKLSN-HFIRENDNISI-----YIDACSSSE 134
Query: 134 -----KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+++AKL + +++ + KAD Y +VS ASI+AK
Sbjct: 135 QSFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAK 173
>gi|340624684|ref|YP_004743137.1| ribonuclease HII [Methanococcus maripaludis X1]
gi|339904952|gb|AEK20394.1| ribonuclease HII [Methanococcus maripaludis X1]
Length = 242
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+G+DEAGRGPVLGPMV + L L DSK L ++KREEL+ + +N+
Sbjct: 23 IVGLDEAGRGPVLGPMVIASVKIDEKNLYKLNDLELKDSKQLSKKKREELY--IIINEMC 80
Query: 76 GWAVDIIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
+IDP + +M +N NKI L+ S S I NI I Y+D +E
Sbjct: 81 DVEKIVIDPETIDNQMEIINLNKIELSAFSKLSN-HFIRENDNISI-----YIDACSSSE 134
Query: 134 -----KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+++AKL + +++ + KAD Y +VS ASI+AK
Sbjct: 135 QSFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAK 173
>gi|150402543|ref|YP_001329837.1| ribonuclease HII [Methanococcus maripaludis C7]
gi|189043625|sp|A6VGW0.1|RNH2_METM7 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|150033573|gb|ABR65686.1| ribonuclease HII [Methanococcus maripaludis C7]
Length = 239
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 85/156 (54%), Gaps = 7/156 (4%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+G+DEAGRGPV+GPMV + + L L DSK L ++KREEL+ +K+++
Sbjct: 20 IVGLDEAGRGPVIGPMVIASVKINENDLPKLHDLGLKDSKQLTKKKREELY--IKISEIC 77
Query: 76 GWAVDIIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
+IDP ++ +M +N NKI L S A I NI I + + +
Sbjct: 78 DVKKIVIDPEKIDEQMEIINLNKIELGAFSK-LANHFIKENENISIYIDACSSNEQSFSN 136
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+++AKL + +++ + KAD Y +VS ASI+AK
Sbjct: 137 QFKAKLINK--NVEIIAEHKADENYKIVSAASIIAK 170
>gi|254167831|ref|ZP_04874680.1| ribonuclease HII [Aciduliprofundum boonei T469]
gi|289596631|ref|YP_003483327.1| ribonuclease HII [Aciduliprofundum boonei T469]
gi|197623122|gb|EDY35688.1| ribonuclease HII [Aciduliprofundum boonei T469]
gi|289534418|gb|ADD08765.1| ribonuclease HII [Aciduliprofundum boonei T469]
Length = 212
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 88/154 (57%), Gaps = 14/154 (9%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGPV+GP+V + C + +A+L DSK L ++RE L E++K S
Sbjct: 4 GVDEAGRGPVIGPLVVAGV---CGEESKIASLRVKDSKKLSPKRRERLAEEIKKVAS-KI 59
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKYQ 136
V I+P E+ A + K+ LNEI + L RV++ + +VY+D + +++
Sbjct: 60 VVIKIEPEEIDA---LREKMTLNEIE----VELFARVIS-QLNGDKVYVDAADVNEDRFA 111
Query: 137 AKLSQRF-PSIKFVVSKKADSLYPVVSGASIVAK 169
++ ++ ++ + KADS YP+VS ASI+AK
Sbjct: 112 EEIKKKLGKDVEIISEHKADSKYPMVSAASIIAK 145
>gi|15668305|ref|NP_247101.1| ribonuclease HII [Methanocaldococcus jannaschii DSM 2661]
gi|2495822|sp|Q57599.1|RNH2_METJA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|1590900|gb|AAB98116.1| ribonuclease HII (rnhB) [Methanocaldococcus jannaschii DSM 2661]
Length = 230
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 94/177 (53%), Gaps = 23/177 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRGPVLGPMV ++ L L DSK L + KR L K+ +++
Sbjct: 3 IIGIDEAGRGPVLGPMVVCAFAIEKEREEELKKLGVKDSKELTKNKRAYL---KKLLENL 59
Query: 76 GWAVDIIDPRELSAKMLNK--NKINLNEISHDS----AIGLITRVLNIGILLTEVYLDTV 129
G+ ++ R L A+ +N+ N INLN+I ++ A LI + LNI E+Y+D
Sbjct: 60 GY----VEKRILEAEEINQLMNSINLNDIEINAFSKVAKNLIEK-LNIRDDEIEIYIDAC 114
Query: 130 GD---------AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
+K + + +R +IK + KAD+ YPVVS ASI+AK E +D
Sbjct: 115 STNTKKFEDSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVSAASIIAKAERDEIID 171
>gi|333910258|ref|YP_004483991.1| ribonuclease HII [Methanotorris igneus Kol 5]
gi|333750847|gb|AEF95926.1| ribonuclease HII [Methanotorris igneus Kol 5]
Length = 232
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 82/162 (50%), Gaps = 16/162 (9%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+GIDEAGRGPVLGPMV + + L L DSK L + +R++LF+ +
Sbjct: 6 IIIGIDEAGRGPVLGPMVVAGVAVEEDKIKELEDLGVKDSKQLTKNQRKKLFQLIGEMGK 65
Query: 75 VGWAVDIIDPRELSAKMLNK--NKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD- 131
V II+P +L M K NKI LN S A G + + E+Y+D
Sbjct: 66 VKTI--IIEPEKLDELMKTKSLNKIELNAFSK-IANGFLKEIEG----NFEIYVDACSSN 118
Query: 132 ----AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
A + +AK+ + P K + KAD YP+VS ASI+AK
Sbjct: 119 AKAFANQLRAKMIDKSP--KIIAEHKADEKYPIVSAASIIAK 158
>gi|164655636|ref|XP_001728947.1| hypothetical protein MGL_3941 [Malassezia globosa CBS 7966]
gi|159102835|gb|EDP41733.1| hypothetical protein MGL_3941 [Malassezia globosa CBS 7966]
Length = 269
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 56/82 (68%), Gaps = 3/82 (3%)
Query: 91 MLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFP---SIK 147
ML + NLN+ S D+ + LI VLN G+ +T++++DTVG+ Y AKL Q FP I+
Sbjct: 1 MLRRIPHNLNQQSCDATVHLIQGVLNSGVDVTKIFVDTVGEPNAYAAKLKQYFPRHSHIE 60
Query: 148 FVVSKKADSLYPVVSGASIVAK 169
++V++KAD+ YP+V ASI AK
Sbjct: 61 WIVARKADATYPIVGAASIAAK 82
>gi|300175421|emb|CBK20732.2| unnamed protein product [Blastocystis hominis]
Length = 174
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 54/70 (77%), Gaps = 2/70 (2%)
Query: 102 ISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQ--RFPSIKFVVSKKADSLYP 159
+SH++AI +I+ +L + + ++EVY+DTVG A KY+AKL+Q F +IKF V+ KADSLY
Sbjct: 1 MSHNAAISMISELLRMKVRVSEVYIDTVGPAAKYEAKLNQTFNFTNIKFKVAPKADSLYK 60
Query: 160 VVSGASIVAK 169
VS ASIVAK
Sbjct: 61 CVSAASIVAK 70
>gi|374635723|ref|ZP_09707316.1| ribonuclease HII [Methanotorris formicicus Mc-S-70]
gi|373561339|gb|EHP87576.1| ribonuclease HII [Methanotorris formicicus Mc-S-70]
Length = 234
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K I+GIDEAGRGPVLGPMV + + L L DSK L + +R++LF
Sbjct: 4 KMKDKKIIVGIDEAGRGPVLGPMVVAGVAIEEDKIKELEDLGVKDSKQLTKNRRKKLFR- 62
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNK--NKINLNEISHDSAIGLITRVLNIGILLTEVYL 126
+ + II+P +L M K NKI LN S A G + + E+Y+
Sbjct: 63 -LIGEMGKIKTIIIEPEKLDELMKTKNLNKIELNAFSK-IANGFLKEIEG----NFEIYV 116
Query: 127 DTVGD-----AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
D A + +AK+ + P I + KAD YP+VS ASI+AK
Sbjct: 117 DACSSNAKAFANQLKAKMIDKTPKI--IAEHKADEKYPIVSSASIIAK 162
>gi|124027720|ref|YP_001013040.1| ribonuclease HII [Hyperthermus butylicus DSM 5456]
gi|189043606|sp|A2BL34.1|RNH2_HYPBU RecName: Full=Ribonuclease HII; Short=RNase HII
gi|123978414|gb|ABM80695.1| ribonuclease HII [Hyperthermus butylicus DSM 5456]
Length = 240
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 82/155 (52%), Gaps = 13/155 (8%)
Query: 17 MGIDEAGRGPVLGPM-VYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF-EDLKVNDS 74
+GIDEAGRGPV+GPM V G C + L L DSK L R +L+ E L+V +
Sbjct: 10 IGIDEAGRGPVIGPMVVVGVAVCSNDIDK-LVALGVRDSKQLTPVVRAKLYGEILRV--A 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ + + P L A +NLN++ ++ + +R+ + VY+D VG EK
Sbjct: 67 LHSVIVKLPPALLDA-------VNLNQLEVETFEYIASRIAGVHDSPEAVYVDAVGSPEK 119
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
A+LS R ++ + AD YP+VS ASIVAK
Sbjct: 120 LAARLSGRL-GVRVIAEPGADKTYPIVSAASIVAK 153
>gi|159905682|ref|YP_001549344.1| ribonuclease HII [Methanococcus maripaludis C6]
gi|238686969|sp|A9A9T9.1|RNH2_METM6 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|159887175|gb|ABX02112.1| ribonuclease HII [Methanococcus maripaludis C6]
Length = 239
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 7/160 (4%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
S I+G+DEAGRGPV+GPMV + L L DSK L ++KREEL+ +K+
Sbjct: 16 SGKIIVGLDEAGRGPVIGPMVIASVKINEKDLYKLQDLGLKDSKQLSKKKREELY--VKI 73
Query: 72 NDSVGWAVDIIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
++ +I P ++ +M N NKI L+ S A I NI I + +
Sbjct: 74 SEICNVKKIVIAPEKIDEQMEITNLNKIELSAFSK-LANHFIKENENISIYIDACSSNEQ 132
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+ +++AKL + +++ + KAD Y +VS ASI+AK
Sbjct: 133 SFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAK 170
>gi|440493662|gb|ELQ76104.1| Ribonuclease HI [Trachipleistophora hominis]
Length = 414
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 72/148 (48%), Gaps = 31/148 (20%)
Query: 48 TLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSA 107
T+ DSK L ++RE ++E + S W + P+ +S +M ++ NLN+IS +
Sbjct: 204 TIRMCDSKQLLPKQRESIYEQIITTHSYVWYA--LHPQYISTEM---DRRNLNDISISAV 258
Query: 108 IGLITRVLNI--------------------------GILLTEVYLDTVGDAEKYQAKLSQ 141
I ++T +LN +T+VY+D +G KY+ L Q
Sbjct: 259 IHILTTILNALDQPNSNTNQPNSNTKPSRKDNQTRAAHTITKVYVDALGSTNKYEHILRQ 318
Query: 142 RFPSIKFVVSKKADSLYPVVSGASIVAK 169
FP I FVV KADS Y V GASIVAK
Sbjct: 319 HFPHIPFVVEYKADSTYRCVGGASIVAK 346
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 16 IMGIDEAGRGPVLGPMVYGCL 36
++GIDEAGRGPVLG +VY L
Sbjct: 64 VIGIDEAGRGPVLGYLVYAAL 84
>gi|134045249|ref|YP_001096735.1| ribonuclease HII [Methanococcus maripaludis C5]
gi|189043624|sp|A4FWE5.1|RNH2_METM5 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|132662874|gb|ABO34520.1| RNase HII [Methanococcus maripaludis C5]
Length = 239
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+G+DEAGRGPV+GPMV + L L DSK L ++KREEL+ K+++
Sbjct: 20 IVGLDEAGRGPVIGPMVIASVKINEKDLPRLDDLGLRDSKQLSKKKREELY--TKISEIC 77
Query: 76 GWAVDIIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
+I+P ++ +M +N NKI L S A I NI I + + +
Sbjct: 78 DVKKVVINPEKIDEQMEIINLNKIELGAFSK-LANHFIKENENISIYIDACSSNEQSFSN 136
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+++AKL + +++ + KAD Y +VS ASI+AK
Sbjct: 137 QFKAKLINK--NVEIIAEHKADENYKIVSAASIIAK 170
>gi|254167925|ref|ZP_04874774.1| ribonuclease HII [Aciduliprofundum boonei T469]
gi|197623216|gb|EDY35782.1| ribonuclease HII [Aciduliprofundum boonei T469]
Length = 212
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 87/154 (56%), Gaps = 14/154 (9%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGPV+GP+V + C + +A+L DSK L + RE L E++K S
Sbjct: 4 GVDEAGRGPVIGPLVVAGV---CGEESKIASLRVKDSKKLSPKSRERLAEEIKKVAS-KI 59
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKYQ 136
V I+P E+ A + ++ LNEI + L RV++ + +VY+D + +++
Sbjct: 60 VVIKIEPEEIDA---LRERMTLNEIE----VELFARVIS-QLNGDKVYVDAADVNEDRFA 111
Query: 137 AKLSQRF-PSIKFVVSKKADSLYPVVSGASIVAK 169
++ ++ ++ + KADS YP+VS ASI+AK
Sbjct: 112 EEIKKKLGKDVEIISEHKADSKYPMVSAASIIAK 145
>gi|147920602|ref|YP_685601.1| ribonuclease H (RNase H) [Methanocella arvoryzae MRE50]
gi|121688011|sp|Q0W5R8.1|RNH2_UNCMA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|110620997|emb|CAJ36275.1| ribonuclease H (RNase H) [Methanocella arvoryzae MRE50]
Length = 224
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 11/156 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
IMGIDEAGRGPV+GP+V + + + DSK L +KREE LK +
Sbjct: 9 IMGIDEAGRGPVIGPLVVCGIIVEEKDLPAIEAMGLKDSKKLSAKKREEFAAALK--NKY 66
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
+ + ++ P+E+ A+ +++ NLN + + GLI T YLD +AE+
Sbjct: 67 KYELSVLPPQEIDARFESED--NLNRLEVNCFAGLIRSAKP-----TIAYLDACDVNAER 119
Query: 135 YQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAK 169
+ + + ++ V + +ADS YP+VS ASI+AK
Sbjct: 120 FGINIKKCLDFELEIVSAHEADSKYPIVSAASIIAK 155
>gi|10835820|pdb|1EKE|A Chain A, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
With Mes Ligand
gi|10835821|pdb|1EKE|B Chain B, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
With Mes Ligand
Length = 230
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 93/177 (52%), Gaps = 23/177 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRGPVLGP V ++ L L DSK L + KR L K+ +++
Sbjct: 3 IIGIDEAGRGPVLGPXVVCAFAIEKEREEELKKLGVKDSKELTKNKRAYL---KKLLENL 59
Query: 76 GWAVDIIDPRELSAKMLNK--NKINLNEISHDS----AIGLITRVLNIGILLTEVYLDTV 129
G+ ++ R L A+ +N+ N INLN+I ++ A LI + LNI E+Y+D
Sbjct: 60 GY----VEKRILEAEEINQLXNSINLNDIEINAFSKVAKNLIEK-LNIRDDEIEIYIDAC 114
Query: 130 GD---------AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
+K + + +R +IK + KAD+ YPVVS ASI+AK E +D
Sbjct: 115 STNTKKFEDSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVSAASIIAKAERDEIID 171
>gi|256811096|ref|YP_003128465.1| ribonuclease HII [Methanocaldococcus fervens AG86]
gi|256794296|gb|ACV24965.1| ribonuclease HII [Methanocaldococcus fervens AG86]
Length = 230
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 87/169 (51%), Gaps = 23/169 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRGPVLGPMV ++ L L DSK L + KR L K+ ++
Sbjct: 3 IIGIDEAGRGPVLGPMVICGYAIKKDKEEDLKKLGVKDSKELTKNKRAYL---KKLLENF 59
Query: 76 GWAVDIIDPRELSAKMLNK--NKINLNEISHDS----AIGLITRVLNIGILLTEVYLDTV 129
G + +I L A+ +N + INLNEI ++ A LI + LNI E+YLD
Sbjct: 60 GCSEKLI----LEAEKINNLMDTINLNEIEINAFSEVAKNLIKK-LNIKDEEVEIYLDAC 114
Query: 130 GD---------AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
EK + + +R IK + KADS YPVVS ASI+AK
Sbjct: 115 STNTKKFESDFKEKIRDVIEERNLKIKIIAEHKADSKYPVVSAASIIAK 163
>gi|47213807|emb|CAF92580.1| unnamed protein product [Tetraodon nigroviridis]
Length = 157
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 54/88 (61%), Gaps = 12/88 (13%)
Query: 94 KNKINLNEISHDSAIGLIT------------RVLNIGILLTEVYLDTVGDAEKYQAKLSQ 141
+ K NLN +SHD+AIGL+ R + ++V++DTVG AEKY+ KLS+
Sbjct: 6 RTKYNLNALSHDTAIGLVQYALDSLESSSKRRTMFSCPSGSQVFVDTVGPAEKYEDKLSK 65
Query: 142 RFPSIKFVVSKKADSLYPVVSGASIVAK 169
FP + V KADSL+P+VS ASI AK
Sbjct: 66 IFPGVNVTVRPKADSLFPIVSAASICAK 93
>gi|257076035|ref|ZP_05570396.1| ribonuclease HII [Ferroplasma acidarmanus fer1]
Length = 205
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 78/152 (51%), Gaps = 13/152 (8%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGP++GPMV L C +++L + ADSK L +RE LF L+ S +
Sbjct: 5 GIDEAGRGPLIGPMVMAIL---CGDRESLEIIGVADSKKLSPGRRESLFARLQ---SYKY 58
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
II P E+ + + K+N+ E ++ S ++ + + VY+D+ E
Sbjct: 59 NFVIISPSEID-RYVEHQKLNVLEETYAS------KLASWAPASSTVYVDSFDVNELRLQ 111
Query: 138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
L + V KAD +YP VS ASI+AK
Sbjct: 112 SLLMENTKRQIVCRHKADEIYPCVSAASIIAK 143
>gi|337283739|ref|YP_004623213.1| ribonuclease HII [Pyrococcus yayanosii CH1]
gi|334899673|gb|AEH23941.1| ribonuclease HII [Pyrococcus yayanosii CH1]
Length = 221
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 85/159 (53%), Gaps = 17/159 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL--KVND 73
+ GIDEAGRGPVLGP+V + L + DSK L +KRE+LFE + V+D
Sbjct: 3 VAGIDEAGRGPVLGPLVIVAVVVDEKKMTELEGIGVRDSKALTPKKREKLFERILSMVDD 62
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVG-D 131
+++ +++P E+ A+ N++ + + + LN + + VY+D+
Sbjct: 63 ---YSIVLVEPPEIDARAGTMNELEVEKFAQ---------ALNSLKVKPDVVYVDSADVR 110
Query: 132 AEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAK 169
+E++ L ++ K V KAD+ YPVVS ASI+AK
Sbjct: 111 SERFGLALREKLAFDAKVVSEHKADAKYPVVSAASILAK 149
>gi|170289973|ref|YP_001736789.1| ribonuclease HII [Candidatus Korarchaeum cryptofilum OPF8]
gi|170174053|gb|ACB07106.1| ribonuclease HII [Candidatus Korarchaeum cryptofilum OPF8]
Length = 217
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 22/161 (13%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
MGIDEAGRGPV+GPMV + + L + DSK L E+REELF + + +
Sbjct: 1 MGIDEAGRGPVIGPMVVAAVILKRREAKRLKEMGVTDSKLLSAERREELF-PMIIESAES 59
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGI--------LLTEVYLDT 128
+ + +I+P+ + + ++KN +NL E S + R + + ++V +
Sbjct: 60 YLIKVIEPKRID-EAVSKNMLNLLEAEVMSELIRELRPARVIVDSPMRNCRKFSDVLREF 118
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+GD+ S+K + KADS Y V+ ASI+AK
Sbjct: 119 LGDS------------SVKIIAENKADSKYIQVASASIIAK 147
>gi|347524319|ref|YP_004781889.1| ribonuclease HII [Pyrolobus fumarii 1A]
gi|343461201|gb|AEM39637.1| ribonuclease HII [Pyrolobus fumarii 1A]
Length = 234
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 9/155 (5%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+MG+DEAGRGP++GPMV + + DSK L +RE L ++ +V
Sbjct: 7 VMGVDEAGRGPIIGPMVIAGVAMCTEDVGNIRLAGVDDSKLLSRAERERLLSLIE-RSAV 65
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI-GILLTEVYLDTVGDAEK 134
+ PR + +++NLN I ++ L+ R ++I G L +VY+D VGD +
Sbjct: 66 YVGRVYVHPRLI-------DEVNLNVIERNTIAFLVGRAMDILGESLKKVYVDAVGDPRQ 118
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
A + + + + KAD+ Y +V ASI+AK
Sbjct: 119 IIAAIRRAGFMGEVIAEPKADARYTIVGAASIIAK 153
>gi|289192478|ref|YP_003458419.1| ribonuclease HII [Methanocaldococcus sp. FS406-22]
gi|288938928|gb|ADC69683.1| ribonuclease HII [Methanocaldococcus sp. FS406-22]
Length = 230
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 93/180 (51%), Gaps = 29/180 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKR---EELFEDLKVN 72
++GIDEAGRGPVLGPMV ++ L L DSK L + KR ++L EDL
Sbjct: 3 VIGIDEAGRGPVLGPMVVCAFAIEKDKEEELKKLGVRDSKELTKNKRAYLKKLLEDL--- 59
Query: 73 DSVGWAVDIIDPRELSAKMLNK--NKINLNEISHDS----AIGLITRVLNIGILLTEVYL 126
G+ +I L A+ +N+ + INLNEI ++ A LI + L I E+YL
Sbjct: 60 ---GYVEKLI----LEAEKINQLMSTINLNEIEINAFSKVAENLIEK-LGIKDEKIEIYL 111
Query: 127 DTVG-DAEKYQAKLSQRFPSI--------KFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
D +A+K++ ++ +I K + KAD+ Y VVS ASI+AK E +D
Sbjct: 112 DACSTNAKKFENDFKEKLDNIIKERNLNVKIIAEHKADAKYSVVSAASIIAKAERDEIID 171
>gi|284161145|ref|YP_003399768.1| ribonuclease HII [Archaeoglobus profundus DSM 5631]
gi|284011142|gb|ADB57095.1| ribonuclease HII [Archaeoglobus profundus DSM 5631]
Length = 211
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 90/163 (55%), Gaps = 17/163 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAG+GPV+GP+V + C + L ++ DSK L KREEL+ +K
Sbjct: 2 IAGIDEAGKGPVIGPLVICGVLCDEETVEYLKSVGVKDSKKLDRRKREELYNIIK----- 56
Query: 76 GWAVDIIDPRELSAKMLNK--NKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DA 132
++ + ++S + LN+ +++NEI + + +I ++ VY+D +
Sbjct: 57 --SLCKVKVLKISVEDLNRLMEYMSINEILKRAYVEIIR-----SLMPKVVYIDCPDINV 109
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK-RSNFE 174
E+++ ++ +R ++ S KAD +YP+VS ASIVAK +FE
Sbjct: 110 ERFKHEIEER-TGVEVFASHKADEIYPIVSIASIVAKVERDFE 151
>gi|288931994|ref|YP_003436054.1| ribonuclease HII [Ferroglobus placidus DSM 10642]
gi|288894242|gb|ADC65779.1| ribonuclease HII [Ferroglobus placidus DSM 10642]
Length = 211
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 85/159 (53%), Gaps = 21/159 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAG+GPV+GP+V + C + L L DSK L EKR+EL E LK + V
Sbjct: 3 IAGIDEAGKGPVIGPLVVCGVSCEEKDVEALKKLGVKDSKRLSPEKRKELAEKLK--EIV 60
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+I P EL++KM K +NEI ++ + +I++ LN + V++D+ +
Sbjct: 61 EHETIVISPEELNSKM---EKTTINEILKEACVEIISK-LNPDV----VFVDS------F 106
Query: 136 QAKLSQRFPSIKFVVSKKADSLYP-----VVSGASIVAK 169
K + +K + KK +++ VV+ ASI+AK
Sbjct: 107 DVKPERLEEELKRLTGKKVVAMHEGEREVVVAAASIIAK 145
>gi|119719808|ref|YP_920303.1| ribonuclease HII [Thermofilum pendens Hrk 5]
gi|189043673|sp|A1RYM0.1|RNH2_THEPD RecName: Full=Ribonuclease HII; Short=RNase HII
gi|119524928|gb|ABL78300.1| RNase HII [Thermofilum pendens Hrk 5]
Length = 213
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 14/166 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGP+LGPMV + CP L + DSK L +R L + SV
Sbjct: 4 VAGIDEAGRGPMLGPMVVAIVVCPEEKVPLLRNMGVRDSKALSPRRRLLLSRAIP---SV 60
Query: 76 GWAVD--IIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
G +V +++P+E+ + + NLN + LI VL+ G L VY+D+ +
Sbjct: 61 GCSVKVRVVEPQEIDCAVRGECYENLNHLEAAVFAQLINEVLSEGELEV-VYMDS---PD 116
Query: 134 KYQAKLSQRFPS-----IKFVVSKKADSLYPVVSGASIVAKRSNFE 174
++ +R + ++ V AD Y +V ASIVAK + E
Sbjct: 117 PVPSRFEERVRALLKGQVRIVAENGADEKYTIVGAASIVAKETRDE 162
>gi|57640740|ref|YP_183218.1| ribonuclease HII [Thermococcus kodakarensis KOD1]
gi|7227922|sp|O74035.1|RNH2_PYRKO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|3551209|dbj|BAA32803.1| ribonuclease HII [Thermococcus kodakaraensis]
gi|57159064|dbj|BAD84994.1| ribonuclease HII [Thermococcus kodakarensis KOD1]
Length = 228
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 13/157 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGPV+GPMV + + L L DSK L ++RE+LF N+ +
Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLF-----NEIL 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVG-DAE 133
G D + EL ++ + LNE ++ + LN + + +Y D D E
Sbjct: 58 GVLDDYV-ILELPPDVIGSREGTLNEFEVEN----FAKALNSLKVKPDVIYADAADVDEE 112
Query: 134 KYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAK 169
++ +L +R VV+K KAD ++PVVS ASI+AK
Sbjct: 113 RFARELGERLNFEAEVVAKHKADDIFPVVSAASILAK 149
>gi|14278500|pdb|1IO2|A Chain A, Crystal Structure Of Type 2 Ribonuclease H From
Hyperthermophilic Archaeon, Thermococcus Kodakaraensis
Kod1
Length = 213
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 13/157 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGPV+GPMV + + L L DSK L ++RE+LF N+ +
Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLF-----NEIL 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVG-DAE 133
G D + EL ++ + LNE ++ + LN + + +Y D D E
Sbjct: 58 GVLDDYV-ILELPPDVIGSREGTLNEFEVEN----FAKALNSLKVKPDVIYADAADVDEE 112
Query: 134 KYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAK 169
++ +L +R VV+K KAD ++PVVS ASI+AK
Sbjct: 113 RFARELGERLNFEAEVVAKHKADDIFPVVSAASILAK 149
>gi|134104116|pdb|2DFE|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-200)-C
Length = 209
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 13/157 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGPV+GPMV + + L L DSK L ++RE+LF N+ +
Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLF-----NEIL 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVG-DAE 133
G D + EL ++ + LNE ++ + LN + + +Y D D E
Sbjct: 58 GVLDDYV-ILELPPDVIGSREGTLNEFEVEN----FAKALNSLKVKPDVIYADAADVDEE 112
Query: 134 KYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAK 169
++ +L +R VV+K KAD ++PVVS ASI+AK
Sbjct: 113 RFARELGERLNFEAEVVAKHKADDIFPVVSAASILAK 149
>gi|134104118|pdb|2DFH|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-212)-C
Length = 221
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 13/157 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGPV+GPMV + + L L DSK L ++RE+LF N+ +
Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLF-----NEIL 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVG-DAE 133
G D + EL ++ + LNE ++ + LN + + +Y D D E
Sbjct: 58 GVLDDYV-ILELPPDVIGSREGTLNEFEVEN----FAKALNSLKVKPDVIYADAADVDEE 112
Query: 134 KYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAK 169
++ +L +R VV+K KAD ++PVVS ASI+AK
Sbjct: 113 RFARELGERLNFEAEVVAKHKADDIFPVVSAASILAK 149
>gi|336476394|ref|YP_004615535.1| ribonuclease HII [Methanosalsum zhilinae DSM 4017]
gi|335929775|gb|AEH60316.1| ribonuclease HII [Methanosalsum zhilinae DSM 4017]
Length = 217
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 88/164 (53%), Gaps = 21/164 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAG+GPV+GPM + S T+ L DSKT+ KR+E +K S
Sbjct: 4 IAGIDEAGKGPVIGPMCIAGVAIDESKLNTIKNLKVRDSKTVTASKRKEFAYQIK-KYSD 62
Query: 76 GWAVDIIDPRELSA--KMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DA 132
W + I P+++ K++ N+I ++ G + +VLN + + Y+D+V ++
Sbjct: 63 DWYIFEISPQQIDELRKVMTMNQIMVH--------GFL-KVLN-KLRPDKAYVDSVDVNS 112
Query: 133 EKYQAKLSQRF-------PSIKFVVSKKADSLYPVVSGASIVAK 169
E++ + L ++ I+ + +ADS+YP+VS ASI+AK
Sbjct: 113 ERFGSTLKIKYSESNPGAKQIEIISKHRADSIYPIVSAASIIAK 156
>gi|88191784|pdb|1X1P|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-197)-A(28-42)
Length = 212
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 13/157 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGPV+GPMV + + L L DSK L ++RE+LF N+ +
Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLF-----NEIL 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVG-DAE 133
G D + EL ++ + LNE ++ + LN + + +Y D D E
Sbjct: 58 GVLDDYV-ILELPPDVIGSREGTLNEFEVEN----FAKALNSLKVKPDVIYADAADVDEE 112
Query: 134 KYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAK 169
++ +L +R VV+K KAD ++PVVS ASI+AK
Sbjct: 113 RFARELGERLNFEAEVVAKHKADDIFPVVSAASILAK 149
>gi|134104117|pdb|2DFF|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-204)-C
Length = 213
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 13/157 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGPV+GPMV + + L L DSK L ++RE+LF N+ +
Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLF-----NEIL 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVG-DAE 133
G D + EL ++ + LNE ++ + LN + + +Y D D E
Sbjct: 58 GVLDDYV-ILELPPDVIGSREGTLNEFEVEN----FAKALNSLKVKPDVIYADAADVDEE 112
Query: 134 KYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAK 169
++ +L +R VV+K KAD ++PVVS ASI+AK
Sbjct: 113 RFARELGERLNFEAEVVAKHKADDIFPVVSAASILAK 149
>gi|401406283|ref|XP_003882591.1| Ribonuclease, related [Neospora caninum Liverpool]
gi|325117006|emb|CBZ52559.1| Ribonuclease, related [Neospora caninum Liverpool]
Length = 297
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 56/100 (56%), Gaps = 27/100 (27%)
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
W++ I P E+SAKML K K +LNEISH++AI LI R + G+ + E
Sbjct: 34 WSIHAIRPEEISAKMLRKKKHSLNEISHETAISLILRTVQSGVNVAE------------- 80
Query: 137 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
V++KADSLYPVVS ASI+AK S +RM
Sbjct: 81 -------------VAEKADSLYPVVSAASILAKVSR-DRM 106
>gi|9664592|gb|AAF97195.1|AF268611_19 ribonuclease HII [uncultured marine group II euryarchaeote 37F11]
Length = 250
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 85/169 (50%), Gaps = 24/169 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++G+DEAGRGPVLGP+V G L P + L DSK L KR+ ++ L N V
Sbjct: 7 LIGVDEAGRGPVLGPLVVGLLSIPKEDEYMLEEQCIEDSKHLSHAKRKLHYDWL--NQQV 64
Query: 76 ---GWAVDII--DPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
GW VD I P + + K +N+ E+ L +LN L LD +
Sbjct: 65 TERGWYVDTIICKPNRIDNAVYAKG-LNILEVD------LFASILNRHHRLFTQELDILL 117
Query: 131 DA-----EKYQAKLSQR---FPSIK--FVVSKKADSLYPVVSGASIVAK 169
DA E++ ++S+R +P +K + KAD+ + +V GASI+AK
Sbjct: 118 DACDVNEERFSNRISERLTDWPWLKTTMIAEHKADTNHRIVGGASILAK 166
>gi|296108883|ref|YP_003615832.1| ribonuclease HII [methanocaldococcus infernus ME]
gi|295433697|gb|ADG12868.1| ribonuclease HII [Methanocaldococcus infernus ME]
Length = 223
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 87/160 (54%), Gaps = 21/160 (13%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAGRGPV+GP+V C+Y + DSK L +EKRE+L ++L+
Sbjct: 3 IGVDEAGRGPVIGPLVV------CAYASE-EEIEAEDSKKLSKEKREKLRKELEKK---- 51
Query: 77 WAVDIIDPRELSAKMLNK--NKINLNEISHDSAIGLITRVLNIGILL-TEVYLDTVG-DA 132
I + ++SA+ LN+ NLNEI + I ++ L E+Y+D+ +
Sbjct: 52 ---GIFEIVKVSAEELNRLMKSKNLNEIEVELFAKAIKNLIEKHNLKDVEIYVDSCSPNR 108
Query: 133 EKYQAKLSQRFP--SIK-FVVSKKADSLYPVVSGASIVAK 169
EK++ KL + SIK +V KAD Y VVS ASI+AK
Sbjct: 109 EKFKRKLLSKLRGLSIKDLIVEHKADEKYKVVSAASIIAK 148
>gi|21228916|ref|NP_634838.1| ribonuclease HII [Methanosarcina mazei Go1]
gi|34395785|sp|Q8PTA3.1|RNH2_METMA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|20907449|gb|AAM32510.1| Ribonuclease [Methanosarcina mazei Go1]
Length = 220
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 83/163 (50%), Gaps = 18/163 (11%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAG+GPV+GPM G + S L L ADSK L +KRE+L +K +
Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVKIDESKAHILKVLGVADSKKLTPKKREQLASQIK-KHAD 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
G+ + + P ++ + +++NEI + +VL + VY D AE+
Sbjct: 62 GYFIFEVSPSQIDE---LRKIMSMNEI----MVVCFAKVLE-QLKPDIVYADAADVKAER 113
Query: 135 YQAKLSQRFP--------SIKFVVSKKADSLYPVVSGASIVAK 169
+ L +++ IK V +AD++YPVVS ASI+AK
Sbjct: 114 FAENLLRQYAKTSPDHAKKIKVVSMHQADAIYPVVSAASIIAK 156
>gi|41614859|ref|NP_963357.1| hypothetical protein NEQ063 [Nanoarchaeum equitans Kin4-M]
gi|74579762|sp|Q74MH3.1|RNH2_NANEQ RecName: Full=Ribonuclease HII; Short=RNase HII
gi|40068583|gb|AAR38918.1| NEQ063 [Nanoarchaeum equitans Kin4-M]
Length = 200
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 78/152 (51%), Gaps = 15/152 (9%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGP++GPMV + Y L L DSK L +E+REELF ++ N V +
Sbjct: 5 GVDEAGRGPIIGPMVIALVIGDSGY---LKELGVKDSKLLTKEQREELFNEIVKNSLVKY 61
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
+I+ P + ++ NLNE+ LI + + ++ + +D+ E Y+
Sbjct: 62 --EIVSPSLI-------DRYNLNELEAKVTANLINSIED---EISHIVIDSPERPENYKL 109
Query: 138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
++ + +++K P+V+ ASIVAK
Sbjct: 110 RILKYLKKRVKIITKNKGEEDPLVAAASIVAK 141
>gi|432328903|ref|YP_007247047.1| ribonuclease H, mammalian HI/archaeal HII subfamily
[Aciduliprofundum sp. MAR08-339]
gi|432135612|gb|AGB04881.1| ribonuclease H, mammalian HI/archaeal HII subfamily
[Aciduliprofundum sp. MAR08-339]
Length = 213
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 89/154 (57%), Gaps = 14/154 (9%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGPV+GPMV + C+ + L L DSK L ++RE+L ++++ S
Sbjct: 4 GVDEAGRGPVIGPMVVAGV---CASRDALIGLGVKDSKKLSPKRREKLAKEIRKIAS-QI 59
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKYQ 136
V +++P E+ + + ++ LN+I + +I++ +N + VY+D D E++
Sbjct: 60 IVLVVEPEEIDSL---RREMTLNDIEVELFARIISK-MNDEV----VYVDAADVDEERFA 111
Query: 137 AKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAK 169
+++ + ++SK KAD LYP VS ASI+AK
Sbjct: 112 REIALKVRKDVNIISKHKADLLYPEVSAASIIAK 145
>gi|375082469|ref|ZP_09729526.1| ribonuclease HII [Thermococcus litoralis DSM 5473]
gi|374742808|gb|EHR79189.1| ribonuclease HII [Thermococcus litoralis DSM 5473]
Length = 224
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 81/158 (51%), Gaps = 19/158 (12%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGPV+GP+V + S Q L L DSK L ++REELFE++
Sbjct: 5 GIDEAGRGPVIGPLVIAAVVVDESRMQELEALGVKDSKKLTPKRREELFEEI-------- 56
Query: 78 AVDIIDPR---ELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDAE 133
V I+D +LS + ++ +NE+ ++ + LN + + +Y+D E
Sbjct: 57 -VQIVDDHVIIQLSPEEIDGRDGTMNELEIEN----FAKALNSLKVKPDVLYIDAADVKE 111
Query: 134 K-YQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAK 169
K + + +R S K + KADS Y V+ ASI+AK
Sbjct: 112 KRFGDIIGERLSFSPKIIAEHKADSKYIPVAAASILAK 149
>gi|20090807|ref|NP_616882.1| ribonuclease HII [Methanosarcina acetivorans C2A]
gi|34395791|sp|Q8TPF4.1|RNH2_METAC RecName: Full=Ribonuclease HII; Short=RNase HII
gi|19915872|gb|AAM05362.1| ribonuclease Hii [Methanosarcina acetivorans C2A]
Length = 223
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 83/163 (50%), Gaps = 18/163 (11%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAG+GPV+GPM G + S L L ADSK L +KRE+L +K +
Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVKIEESRAHILKVLGVADSKKLTPKKREQLASQIK-KHAD 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
G+ + I P ++ + +++NEI + +VL + VY D AE+
Sbjct: 62 GFFILEITPAQIDE---LRKIMSMNEI----MVICFAKVLE-QLKPDIVYADAADVKAER 113
Query: 135 YQAKLSQRFP--------SIKFVVSKKADSLYPVVSGASIVAK 169
+ L +++ I+ + +AD++YPVVS ASI+AK
Sbjct: 114 FAENLRRQYAKTNPAHAKKIEIISMHQADAIYPVVSAASIIAK 156
>gi|14520734|ref|NP_126209.1| ribonuclease HII [Pyrococcus abyssi GE5]
gi|11387114|sp|Q9V1A9.1|RNH2_PYRAB RecName: Full=Ribonuclease HII; Short=RNase HII
gi|5457950|emb|CAB49440.1| rnhB ribonuclease HII [Pyrococcus abyssi GE5]
gi|380741273|tpe|CCE69907.1| TPA: ribonuclease HII [Pyrococcus abyssi GE5]
Length = 224
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 86/158 (54%), Gaps = 15/158 (9%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVNDS 74
+ G DEAGRGPV+GP+V ++L L DSK L +RE+LF+++ KV D
Sbjct: 3 VAGADEAGRGPVIGPLVIVAAVVEEDKIRSLTKLGVKDSKQLTPAQREKLFDEIVKVLDD 62
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV-YLDTVG-DA 132
++V I+ P+++ + K ++NE+ ++ + + LN + EV Y+D+ A
Sbjct: 63 --YSVVIVSPQDIDGR-----KGSMNELEVENFV----KALNSLKVKPEVIYIDSADVKA 111
Query: 133 EKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAK 169
E++ + R K V KAD+ Y +VS ASI+AK
Sbjct: 112 ERFAENIRSRLAYEAKVVAEHKADAKYEIVSAASILAK 149
>gi|150399435|ref|YP_001323202.1| ribonuclease HII [Methanococcus vannielii SB]
gi|189043627|sp|A6UQ18.1|RNH2_METVS RecName: Full=Ribonuclease HII; Short=RNase HII
gi|150012138|gb|ABR54590.1| ribonuclease HII [Methanococcus vannielii SB]
Length = 244
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+G+DEAGRGPVLGPMV + + +L+ DSK L +++REE + +N+
Sbjct: 25 ILGLDEAGRGPVLGPMVISVVKVTEKDLDKINSLDLKDSKQLTKKRREEYYNI--INECF 82
Query: 76 GWAVDIIDPRELSA--KMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
++ P ++ K N NKI L+ S S + N+ I +
Sbjct: 83 EVQKIVLAPEKIDEYMKTSNLNKIELSAFSKLSN-HFLKEYENVKIFIDACSSSEQSFLN 141
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+++AKL + ++ + KAD Y +VS ASI+AK
Sbjct: 142 QFKAKLINK--KVEIIAEHKADEKYKIVSAASIIAK 175
>gi|291333356|gb|ADD93062.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S05-C10]
Length = 830
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 82/161 (50%), Gaps = 14/161 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+G DEAGRGPVLGP+V + P + Q L L DSK L +KREEL + ++
Sbjct: 4 IVGADEAGRGPVLGPLVVAAVAIPATDLQRLIDLGVDDSKALSPKKREELNQ--IIHQEP 61
Query: 76 GWAVDIID--PRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
W V II+ P + M K LN++ D G L + + E+ LD E
Sbjct: 62 TWQVSIIECSPERIDVTM---EKKTLNDLEVD-LFGEAIDSLEVE-RIEELILDACDTNE 116
Query: 134 -KYQAKLSQRFPS---IKFVVSKK-ADSLYPVVSGASIVAK 169
++ ++ + S ++ V+SK AD+ PVV ASIVAK
Sbjct: 117 ARFGRNVASKISSGKIVETVISKHGADAENPVVGAASIVAK 157
>gi|300710295|ref|YP_003736109.1| ribonuclease HII [Halalkalicoccus jeotgali B3]
gi|448294621|ref|ZP_21484700.1| ribonuclease HII [Halalkalicoccus jeotgali B3]
gi|299123978|gb|ADJ14317.1| ribonuclease HII [Halalkalicoccus jeotgali B3]
gi|445586298|gb|ELY40580.1| ribonuclease HII [Halalkalicoccus jeotgali B3]
Length = 214
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
C GIDEAG+GPVLGPM+ C+ C +++ DSK L KR L E L +++
Sbjct: 2 CRFGIDEAGKGPVLGPMIAACV---CVPDESVLPEGIDDSKRLTPAKRGRLSEALLGDEA 58
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+G + + P + + N + + +H A + GI DA +
Sbjct: 59 IGIGIAAVSPDRIDTPETDMNSLTV--AAHAEAASEVVEPGMTGICDAGDV-----DAGR 111
Query: 135 YQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
+ ++ QR P + AD + +V AS+VAK R+
Sbjct: 112 FVHRVGQRLPEGVSLSGEHGADEHHAIVGAASVVAKVERDRRV 154
>gi|296241926|ref|YP_003649413.1| ribonuclease HII [Thermosphaera aggregans DSM 11486]
gi|296094510|gb|ADG90461.1| ribonuclease HII [Thermosphaera aggregans DSM 11486]
Length = 248
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 15/164 (9%)
Query: 16 IMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++GIDEAGRGP++G MV G + +++ L+ ++ DSKT+ R E F L+ N S
Sbjct: 5 LIGIDEAGRGPLVGDMVVAGVMVEEKVFEELLSRISIRDSKTMTPRGRFESFLALE-NSS 63
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLI----TRVLNIGILLTEVYLDTVG 130
+ +D + P+E+ ++ NLN ++ S + +I T + + L EVY+D V
Sbjct: 64 ISVYLDYLSPKEI-------DRENLNMLTAGSIVRIIQFFNTLLSSYDERLVEVYIDEVK 116
Query: 131 DAEKYQAKLSQRF--PSIKFVVSKKADSLYPVVSGASIVAKRSN 172
+K K + K V +ADS YP+VS ASI+AK S
Sbjct: 117 GVKKVVEKECSKLFGKRCKLVFESQADSKYPIVSLASIIAKVSR 160
>gi|307353890|ref|YP_003894941.1| ribonuclease HII [Methanoplanus petrolearius DSM 11571]
gi|307157123|gb|ADN36503.1| ribonuclease HII [Methanoplanus petrolearius DSM 11571]
Length = 212
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 74/156 (47%), Gaps = 14/156 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAG+G VLGPMV G + FADSKTL +RE+ +E++
Sbjct: 2 ICGIDEAGKGSVLGPMVIGGV--AGKDLSEFVKKGFADSKTLSPRRREQFYEEIVAEFKT 59
Query: 76 GWAVDIIDPRELSAKMLN--KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
V LSA M++ ++ + +NEI S IT ++ + ++ V AE
Sbjct: 60 TTVV-------LSAAMIDELRSSMTMNEIVARSHARAITDLMPDTAYVDACDVNEVRYAE 112
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
L I V KAD LY VVS ASIVAK
Sbjct: 113 TISGFLKN---DIAIVSKHKADDLYAVVSAASIVAK 145
>gi|424811467|ref|ZP_18236718.1| ribonuclease H, archaeal HII subfamily [Candidatus Nanosalinarum
sp. J07AB56]
gi|339757193|gb|EGQ40774.1| ribonuclease H, archaeal HII subfamily [Candidatus Nanosalinarum
sp. J07AB56]
Length = 217
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 81/159 (50%), Gaps = 18/159 (11%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRGPV+G M G S L L DSK L ++ R+ L ++ D+
Sbjct: 4 ILGIDEAGRGPVIGSMFIGGFLVEESELGRLEELGLKDSKKLSDQARDRLRTEV---DAY 60
Query: 76 GWAVDIIDPRELSAKMLNK--NKINLNEISHDSAIGLITRVL--NIGILLTEVYLDTVGD 131
G + RE+ A +L+ ++ +N++ + LI+R + I L E D
Sbjct: 61 GETL----LREVEAPVLDDKMEEVTINDVELEEFAALISRAQPEKVVIDLPE------HD 110
Query: 132 AEKYQAKLSQRFPSIKFVVSKK-ADSLYPVVSGASIVAK 169
A+ Y+ KL R V ++ AD+ YP+VS AS+VAK
Sbjct: 111 ADVYEEKLLSRLDFDPEVTAEHGADAAYPIVSAASVVAK 149
>gi|300175420|emb|CBK20731.2| unnamed protein product [Blastocystis hominis]
Length = 539
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRGPV+GPMVY Y S + ++ L F DSK +R+ + + S+
Sbjct: 452 IVGIDEAGRGPVVGPMVYAAAYWAKSKNEEISNLGFDDSKKFTSGQRDGFRKTIDETGSI 511
Query: 76 GWAVDIIDPRELSAKMLN 93
G+ + + P+E+SA ML
Sbjct: 512 GYLIRSLSPKEISANMLQ 529
>gi|88602504|ref|YP_502682.1| ribonuclease HII [Methanospirillum hungatei JF-1]
gi|115305550|sp|Q2FP80.1|RNH2_METHJ RecName: Full=Ribonuclease HII; Short=RNase HII
gi|88187966|gb|ABD40963.1| RNase HII [Methanospirillum hungatei JF-1]
Length = 212
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 75/160 (46%), Gaps = 22/160 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAG+G VLGPMV + C+ L L ADSK L + RE++ D+K
Sbjct: 2 ICGVDEAGKGSVLGPMVVAAV--GCTDMDDLIALGVADSKKLSSKSREKISADIKAQFPF 59
Query: 76 GWAVDII-DPRELSAKMLNKNKINLNEI---SHDSAIGLITRVLNIGILLTEVYLDTVGD 131
+ D EL + + +NEI SH A+ I + T Y+D
Sbjct: 60 SIVIRTAHDIDEL------RRTMTMNEIVARSHAEAL--------IPLNCTCAYVDACDV 105
Query: 132 AEKYQAKLSQRF--PSIKFVVSKKADSLYPVVSGASIVAK 169
+E+ + F P V KADSL+P VS ASI+AK
Sbjct: 106 SEERYEETVSSFSPPDCTIVARHKADSLFPPVSAASIIAK 145
>gi|84490178|ref|YP_448410.1| ribonuclease HII [Methanosphaera stadtmanae DSM 3091]
gi|115305551|sp|Q2NEI6.1|RNH2_METST RecName: Full=Ribonuclease HII; Short=RNase HII
gi|84373497|gb|ABC57767.1| RnhB [Methanosphaera stadtmanae DSM 3091]
Length = 212
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 10/164 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRG V+GP+V G + + L + DSK L +KR + +K +
Sbjct: 9 ILGIDEAGRGSVIGPLVIGGVLMKKKKIRFLNRIGVKDSKQLNMKKRTIISRKIK---KI 65
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE-K 134
II P + N N INLNEI + + I +++ Y+D + E +
Sbjct: 66 AQFKTIIIPAHTIDEKRN-NDINLNEIETE-GMEEIIKIMK----PNACYIDCIDVRENR 119
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMDI 178
+ K+ + P++ V KAD Y +VS ASI+AK ++++I
Sbjct: 120 FHDKIQKINPNMTVVTEHKADETYKIVSAASIIAKVERDKQLEI 163
>gi|332157881|ref|YP_004423160.1| ribonuclease HII [Pyrococcus sp. NA2]
gi|331033344|gb|AEC51156.1| ribonuclease HII [Pyrococcus sp. NA2]
Length = 219
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 84/156 (53%), Gaps = 11/156 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGPV+GP+V + L ++ DSK L E+RE +F+++ VN
Sbjct: 3 IGGVDEAGRGPVIGPLVIVAVVISEDMLSDLRSIGVRDSKQLTPEQRERIFDEI-VNVLD 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
++V ++ P+E+ + + +NL E+ L LN+ + +Y+D+ EK
Sbjct: 62 DYSVVVVSPQEIDNR---SSSLNLLEVEK---FALALNSLNVK--PSRIYVDSADVDEKR 113
Query: 136 QAKL--SQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
A L ++ + + + KAD+ Y VV+ ASI+AK
Sbjct: 114 FASLIRAKLNYNAEVIAEHKADAKYEVVAAASILAK 149
>gi|395646404|ref|ZP_10434264.1| ribonuclease HII [Methanofollis liminatans DSM 4140]
gi|395443144|gb|EJG07901.1| ribonuclease HII [Methanofollis liminatans DSM 4140]
Length = 212
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 22/166 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATL--NFADSKTLKEEKREELFEDLKVND 73
I G+DEAG+G VLGPMV G + C + + L DSK L ++R L+++ +
Sbjct: 2 ICGVDEAGKGAVLGPMVVGGVGC-----EEMGDLPPGVKDSKALTPKRRATLYDE--ITG 54
Query: 74 SVGWAVDIIDPRELSAKMLN--KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG- 130
S W V E+SA ++ + ++++N I + G+I + Y+D
Sbjct: 55 SFPWTVI-----EVSAAEIDHLREEMSMNTIVARAHAGVIA-----ALAPQTAYVDACDV 104
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
+ E+Y A ++ + AD+L+PVVS ASIVAK S R+
Sbjct: 105 NEERYAATVTALGSPCPVIARHHADALFPVVSAASIVAKVSRDRRI 150
>gi|73670221|ref|YP_306236.1| ribonuclease HII [Methanosarcina barkeri str. Fusaro]
gi|97182902|sp|Q468N6.1|RNH2_METBF RecName: Full=Ribonuclease HII; Short=RNase HII
gi|72397383|gb|AAZ71656.1| RNase HII [Methanosarcina barkeri str. Fusaro]
Length = 224
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 18/163 (11%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAG+GPV+GPM G + S L L ADSK L +KRE+L +K +
Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVKIEESRAHILKVLGVADSKKLTPKKREQLAAQIK-KHAD 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
G+ V + P ++ + + +NEI + ++VL + +Y D +AE+
Sbjct: 62 GFFVLEVSPSQIDEL---RKIMTMNEI----MVVCFSKVLE-QLKPDLLYADAADVNAER 113
Query: 135 YQAKLSQRF--------PSIKFVVSKKADSLYPVVSGASIVAK 169
+ + +++ I+ + +AD+ YPVVS ASI+AK
Sbjct: 114 FATNIRKQYSKTNPDHAKEIEIISMHQADATYPVVSAASIIAK 156
>gi|307595739|ref|YP_003902056.1| ribonuclease HII [Vulcanisaeta distributa DSM 14429]
gi|307550940|gb|ADN51005.1| ribonuclease HII [Vulcanisaeta distributa DSM 14429]
Length = 218
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 79/155 (50%), Gaps = 11/155 (7%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGPV+GPMV + L + DSK L R LF LK ++ +
Sbjct: 7 GIDEAGRGPVIGPMVMAI--AVTNDMNRLKAMGIRDSKELSPAGRARLFSILK--STLNY 62
Query: 78 A-VDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
+I++PR + + N +N+ E+ + AI LI R LN + VY+D+ +
Sbjct: 63 IDYEIVEPRVID-NYVYMNALNILEV--EIAIKLINRALN-SVSPQVVYIDSPDPRPERY 118
Query: 137 AKLSQR--FPSIKFVVSKKADSLYPVVSGASIVAK 169
+ +R +++ V AD L PVVS ASIVAK
Sbjct: 119 RDMVKRGVVGNVEVVAMNNADKLIPVVSAASIVAK 153
>gi|282165631|ref|YP_003358016.1| ribonuclease HII [Methanocella paludicola SANAE]
gi|282157945|dbj|BAI63033.1| ribonuclease HII [Methanocella paludicola SANAE]
Length = 217
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 11/156 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGPV+GPMV + + + ++ DSK L +KREE +K+ D
Sbjct: 2 IAGIDEAGRGPVIGPMVVCGVSVSEKKLRKIKSMGLKDSKLLTPKKREEFA--VKIKDVC 59
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
+ + ++ P + ++ +++NLNE+ + + +L + Y+D +AE+
Sbjct: 60 EYELVVVGPERIDSRA--NDELNLNELE----VECFSNILK-ALRPATAYVDACDVNAER 112
Query: 135 YQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAK 169
+ + + ++ + AD YPVVS ASI+AK
Sbjct: 113 FGINVKKGLDFEVEVISRHNADRDYPVVSAASILAK 148
>gi|383318933|ref|YP_005379774.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Methanocella
conradii HZ254]
gi|379320303|gb|AFC99255.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Methanocella
conradii HZ254]
Length = 217
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 13/157 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGPV+GP+V + + + + DSK L ++REEL LK
Sbjct: 2 IAGVDEAGRGPVIGPLVVCGVAVSPRRLKAIEQMGLKDSKLLTPKRREELAVRLK--KIC 59
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV-YLDTVG-DAE 133
+ ++ P E+ A+M + +N E+ + + I L +V YLD +AE
Sbjct: 60 SHELVVVSPEEIDARMAGGSTLNGIEVECFAKV--------IEALRPKVAYLDACDVNAE 111
Query: 134 KYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAK 169
++ + +R ++ V AD YP+VS ASI+AK
Sbjct: 112 RFGLNVRKRLSFEVEVVSRHNADKDYPIVSAASILAK 148
>gi|242398404|ref|YP_002993828.1| Ribonuclease HII [Thermococcus sibiricus MM 739]
gi|259494074|sp|C6A1I4.1|RNH2_THESM RecName: Full=Ribonuclease HII; Short=RNase HII
gi|242264797|gb|ACS89479.1| Ribonuclease HII [Thermococcus sibiricus MM 739]
Length = 224
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 83/160 (51%), Gaps = 23/160 (14%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGPV+GP+V + S + L DSK L +KREELFE +
Sbjct: 5 GIDEAGRGPVVGPLVIAAVVIDESKIEKFEALGVKDSKKLSPKKREELFEKI-------- 56
Query: 78 AVDIIDPR---ELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVG-DA 132
++++D ELS + ++K + +N D + +VLN + I VY+D +
Sbjct: 57 -IELVDDYFILELSPEDIDKREGTMN----DFEVENFAKVLNSLKIKPDLVYIDAADVNE 111
Query: 133 EKYQAKLSQR---FPSIKFVVSKKADSLYPVVSGASIVAK 169
E++ + ++ +P I + KADS Y V+ ASI+AK
Sbjct: 112 ERFGIVVREKLSFYPKI--IAEHKADSKYIPVAAASILAK 149
>gi|409096060|ref|ZP_11216084.1| ribonuclease HII [Thermococcus zilligii AN1]
Length = 224
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 78/157 (49%), Gaps = 13/157 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGPV+GPMV + L L DSK L +RE+LF+++ +
Sbjct: 5 IAGIDEAGRGPVIGPMVIAAVVFDEDSIPNLKALGVRDSKKLTPRRREKLFDEI-----L 59
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDAEK 134
G A D + ELS + ++ + LNE + + LN + + +Y+D E+
Sbjct: 60 GIADDYV-ILELSPEEIDSREGTLNEFE----VNNFAKALNSLKVKPDVIYIDAADVREE 114
Query: 135 YQAKLSQRFPSIK--FVVSKKADSLYPVVSGASIVAK 169
+ +F + K + KAD +P VS ASI+AK
Sbjct: 115 RFGEEIGKFLNFKAEIIAEHKADDKFPPVSAASILAK 151
>gi|18978153|ref|NP_579510.1| ribonuclease HII [Pyrococcus furiosus DSM 3638]
gi|397652571|ref|YP_006493152.1| ribonuclease HII [Pyrococcus furiosus COM1]
gi|24638181|sp|Q8U036.1|RNH2_PYRFU RecName: Full=Ribonuclease HII; Short=RNase HII
gi|18893958|gb|AAL81905.1| RNaseH II [Pyrococcus furiosus DSM 3638]
gi|393190162|gb|AFN04860.1| ribonuclease HII [Pyrococcus furiosus COM1]
Length = 224
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 11/156 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP +GP+V + + L + DSK L +R+ LF + + +
Sbjct: 3 IGGIDEAGRGPAIGPLVVATVVVDEKNIEKLRNIGVKDSKQLTPHERKNLFSQI-TSIAD 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
+ + I+ P E+ + N++ + + + L L I L +Y D DA +
Sbjct: 62 DYKIVIVSPEEIDNRSGTMNELEVEKFA------LALNSLQIKPAL--IYADAADVDANR 113
Query: 135 YQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAK 169
+ + + +R K + KAD+ YPVVS ASI+AK
Sbjct: 114 FASLIERRLNYKAKIIAEHKADAKYPVVSAASILAK 149
>gi|118431079|ref|NP_147280.2| ribonuclease HII [Aeropyrum pernix K1]
gi|150421651|sp|Q9YET5.2|RNH2_AERPE RecName: Full=Ribonuclease HII; Short=RNase HII
gi|116062405|dbj|BAA79461.2| ribonuclease HII [Aeropyrum pernix K1]
Length = 225
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 86/167 (51%), Gaps = 13/167 (7%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++G+DEAGRG ++G +V + L +L DSK L R EL+ ++
Sbjct: 3 IVVGVDEAGRGSLVGDLVVAGFAVEEARLGELQSLGVRDSKQLSPAARVELYREI---SG 59
Query: 75 VGW-AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDA 132
VG+ V+ I P E+ + N+N + + +++R+++ +G+ + V +D GD
Sbjct: 60 VGFFTVEAIRPWEIDGE-------NINILVTKAVEEIVSRIVSYLGVHPSLVVVDKYGDV 112
Query: 133 EKYQAKLSQ-RFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMDI 178
+ + L++ +V +KADS YPVVS ASIVAK R+ +
Sbjct: 113 QGLRLALTRLGIEPRSILVEEKADSRYPVVSAASIVAKVVRDARLQV 159
>gi|345005256|ref|YP_004808109.1| ribonuclease HII [halophilic archaeon DL31]
gi|344320882|gb|AEN05736.1| ribonuclease HII [halophilic archaeon DL31]
Length = 217
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 16/159 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++G DEAG+GP LGPMV G + + DSK L +REEL L+ + +
Sbjct: 2 LVGADEAGKGPALGPMVAGAVRA----DRADLPSGLDDSKKLSPARREELATALRAHPDI 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
AV + P + ++ + ++N + + +T V G L DT DAE++
Sbjct: 58 RVAVATVPP-----ERIDDPETDMNSLGVAAQAEAVTAVAEPGDDLFADAADT--DAERF 110
Query: 136 QAKLSQRF-----PSIKFVVSKKADSLYPVVSGASIVAK 169
+L +++ AD YPVVS AS+VAK
Sbjct: 111 GRRLRDTILDGDGSALEVTAEHGADESYPVVSAASVVAK 149
>gi|269123118|ref|YP_003305695.1| Ribonuclease H [Streptobacillus moniliformis DSM 12112]
gi|268314444|gb|ACZ00818.1| Ribonuclease H [Streptobacillus moniliformis DSM 12112]
Length = 199
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+G+DEAGRGP+ GP+V C+ C Y + L LN DSK L ++KR ELF L ND +
Sbjct: 13 IIGVDEAGRGPLAGPVVAACV-CINKYSKKLEELN--DSKKLTDKKRRELFNYLTTNDDI 69
Query: 76 GWAVDIIDPR 85
V I+D +
Sbjct: 70 KIGVGIVDEK 79
>gi|312137140|ref|YP_004004477.1| rnase hii [Methanothermus fervidus DSM 2088]
gi|311224859|gb|ADP77715.1| RNase HII [Methanothermus fervidus DSM 2088]
Length = 200
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 83/159 (52%), Gaps = 22/159 (13%)
Query: 16 IMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+GIDEAGRGPVLGP++ G L + L LN DSK L +R+ L +++K S
Sbjct: 3 ILGIDEAGRGPVLGPLIVCGVL---VDDENKLKKLNVRDSKLLSPRRRKILAKEIK-KVS 58
Query: 75 VGWAVDI----IDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
+ V I ID ++ I+LNEI A+ I + N +V +D++
Sbjct: 59 KCFIVKIQAYEIDKLRIAG-------ISLNEIER-IAMSKIIKNAN----PKKVIVDSID 106
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
K K Q+ +I+ +V KAD YPVVS ASIVAK
Sbjct: 107 IKPKRLKKKLQK-ENIEVIVEHKADEKYPVVSAASIVAK 144
>gi|239623747|ref|ZP_04666778.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239521778|gb|EEQ61644.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 219
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 62/107 (57%), Gaps = 15/107 (14%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
++ S+ I GIDEAGRGP+ GP+ G + P + L DSK L E++REELFE+
Sbjct: 27 EYGSSAFICGIDEAGRGPLAGPVAAGAVILP----KDCRILYLNDSKKLSEKRREELFEE 82
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDS---AIGLIT 112
+K +V W+V I P + ++IN+ + ++++ A+G +T
Sbjct: 83 IK-EKAVAWSVGIATPARI-------DEINILQATYEAMREAVGQLT 121
>gi|11498229|ref|NP_069455.1| ribonuclease HII [Archaeoglobus fulgidus DSM 4304]
gi|7388077|sp|O29634.1|RNH2_ARCFU RecName: Full=Ribonuclease HII; Short=RNase HII
gi|2650000|gb|AAB90620.1| ribonuclease HII (rnhB) [Archaeoglobus fulgidus DSM 4304]
Length = 205
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 14/153 (9%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAG+G V+GP+V + CS + L L DSK L + +REEL E+++
Sbjct: 4 GIDEAGKGCVIGPLVVAGV--ACSDEDRLRKLGVKDSKKLSQGRREELAEEIR--KICRT 59
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV-YLDTVGDAEKYQ 136
V + P L +M K +NEI + +I R L E+ Y+D+ +
Sbjct: 60 EVLKVSPENLDERMAAKT---INEILKECYAEIILR------LKPEIAYVDSPDVIPERL 110
Query: 137 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
++ + ++ V KAD YP+V+ ASI+AK
Sbjct: 111 SRELEEITGLRVVAEHKADEKYPLVAAASIIAK 143
>gi|321159924|pdb|3P83|D Chain D, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
Fulgidus.
gi|321159925|pdb|3P83|E Chain E, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
Fulgidus.
gi|321159926|pdb|3P83|F Chain F, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
Fulgidus
Length = 217
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 14/163 (8%)
Query: 8 PKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE 67
P++ GIDEAG+G V+GP+V + C S + L L DSK L + +REEL E
Sbjct: 6 PEFPGRLMKAGIDEAGKGCVIGPLVVAGVAC--SDEDRLRKLGVKDSKKLSQGRREELAE 63
Query: 68 DLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV-YL 126
+++ V + P L +M K +NEI + +I R L E+ Y+
Sbjct: 64 EIR--KICRTEVLKVSPENLDERMAAKT---INEILKECYAEIILR------LKPEIAYV 112
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
D+ + ++ + ++ V KAD YP+V+ ASI+AK
Sbjct: 113 DSPDVIPERLSRELEEITGLRVVAEHKADEKYPLVAAASIIAK 155
>gi|14278646|pdb|1I39|A Chain A, Rnase Hii From Archaeoglobus Fulgidus
gi|14278647|pdb|1I3A|A Chain A, Rnase Hii From Archaeoglobus Fulgidus With Cobalt
Hexammine Chloride
Length = 225
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 14/153 (9%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAG+G V+GP+V + CS + L L DSK L + +REEL E+++
Sbjct: 24 GIDEAGKGCVIGPLVVAGV--ACSDEDRLRKLGVKDSKKLSQGRREELAEEIR--KICRT 79
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV-YLDTVGDAEKYQ 136
V + P L +M K +NEI + +I R L E+ Y+D+ +
Sbjct: 80 EVLKVSPENLDERMAAKT---INEILKECYAEIILR------LKPEIAYVDSPDVIPERL 130
Query: 137 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
++ + ++ V KAD YP+V+ ASI+AK
Sbjct: 131 SRELEEITGLRVVAEHKADEKYPLVAAASIIAK 163
>gi|219851606|ref|YP_002466038.1| ribonuclease HII [Methanosphaerula palustris E1-9c]
gi|219545865|gb|ACL16315.1| ribonuclease HII [Methanosphaerula palustris E1-9c]
Length = 219
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 80/164 (48%), Gaps = 24/164 (14%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK--- 70
P I G+DEAG+G VLGPMV + +A L DSK L KRE+L++ ++
Sbjct: 4 PLICGVDEAGKGAVLGPMVVAGV--ASRDVSAVAALGVRDSKQLTRLKREDLYDQIRSIC 61
Query: 71 -VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+V A DI RE SA M N I H + I +T L Y+D
Sbjct: 62 TTTVTVLSAADIDLARE-SATM---NMIVAR--GHAAVISTLTPTL--------AYVDAC 107
Query: 130 G-DAEKYQAKLSQRF---PSIKFVVSKKADSLYPVVSGASIVAK 169
+A++Y+ ++ S + + +ADS YP+V+ ASI+AK
Sbjct: 108 DVNADRYRETVTALLEPAASCQVIAEHRADSTYPIVAAASIIAK 151
>gi|15899137|ref|NP_343742.1| ribonuclease HII [Sulfolobus solfataricus P2]
gi|284173748|ref|ZP_06387717.1| ribonuclease HII [Sulfolobus solfataricus 98/2]
gi|384432732|ref|YP_005642090.1| ribonuclease HII [Sulfolobus solfataricus 98/2]
gi|74539626|sp|Q97W56.1|RNH2_SULSO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|13815686|gb|AAK42532.1| Ribonuclease HII (rnhB) [Sulfolobus solfataricus P2]
gi|261600886|gb|ACX90489.1| ribonuclease HII [Sulfolobus solfataricus 98/2]
Length = 212
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 14/159 (8%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRG ++GPM+ + + + L + DSK L E+RE+LF D+ N
Sbjct: 3 VGIDEAGRGALIGPMIVAGVVISDTKLKFLKGIGVKDSKQLTRERREKLF-DIVANTVEA 61
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
+ V + P E+ + NLN++++D+ +I + + + V D VGD EK
Sbjct: 62 FTVVKVFPYEI-------DNYNLNDLTYDAVSKIILSLSSFNPEIVTV--DKVGD-EKPV 111
Query: 137 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK--RSNF 173
+L + K V KAD L+ S ASI+AK R N+
Sbjct: 112 IELINKL-GYKSNVVHKADVLFVEASAASIIAKVIRDNY 149
>gi|330835291|ref|YP_004410019.1| ribonuclease HII [Metallosphaera cuprina Ar-4]
gi|329567430|gb|AEB95535.1| ribonuclease HII [Metallosphaera cuprina Ar-4]
Length = 208
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 86/167 (51%), Gaps = 19/167 (11%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRG ++GPM+ + ++ L L DSK L ++REELF + + S G
Sbjct: 3 LGIDEAGRGCLIGPMIVAGIVLDEKGREELKELGVKDSKRLTRKRREELFNAI-IERSKG 61
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRV--LNIGILLTEVYLDTVGDAEK 134
AV +P E+ + NLN +++ +I+ + LN I V +D VG E
Sbjct: 62 IAVAKAEPLEIDSN-------NLNALTYRKVSEIISSLSWLNPKI----VTVDKVG-KET 109
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK--RSN-FERMDI 178
+L +R + VV KAD L+ S ASI+AK R N ER+ +
Sbjct: 110 EVIELIERLGFVANVVH-KADELFIEASSASIIAKVIRDNIIERLKL 155
>gi|91772495|ref|YP_565187.1| ribonuclease HII [Methanococcoides burtonii DSM 6242]
gi|121691891|sp|Q12YN9.1|RNH2_METBU RecName: Full=Ribonuclease HII; Short=RNase HII
gi|91711510|gb|ABE51437.1| Ribonuclease HII [Methanococcoides burtonii DSM 6242]
Length = 213
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 31/169 (18%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAG+GPV+GPM G + L L ADSK L ++R L +K +
Sbjct: 3 IIGIDEAGKGPVIGPMCIGGVRIDEDKSNALKNLGVADSKKLSPKRRVHLAAQIK-KYAD 61
Query: 76 GWAVDIIDPRELSA--KMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV-GDA 132
GW V + P ++ K+++ N I VL G ++ E+ D + DA
Sbjct: 62 GWFVYEVSPNQIDELRKLMSMNDI---------------MVLAFGSVIEELPSDKIYADA 106
Query: 133 -----EKYQAKL----SQRFPSIK--FVVSKK-ADSLYPVVSGASIVAK 169
E++ +L ++ P + V+SK AD L+PVVS ASI+AK
Sbjct: 107 ADVKEERFGKRLFDNYMEKHPDVSPPEVISKHGADDLFPVVSAASILAK 155
>gi|305663629|ref|YP_003859917.1| ribonuclease HII [Ignisphaera aggregans DSM 17230]
gi|304378198|gb|ADM28037.1| ribonuclease HII [Ignisphaera aggregans DSM 17230]
Length = 232
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 12/161 (7%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
N I GIDEAGRGP++G M + + L + DSK L EKR + F + +
Sbjct: 2 NIHICGIDEAGRGPLIGDMFIAMIVINTDALKYLENIGVRDSKRLSREKRIKFFP-IIIE 60
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+S + + P +L + N NK+ LN + LI + ++I ++E+Y+D +
Sbjct: 61 NSELVLISRLTPSQLDEE--NINKLELNTVCR-----LIKKSISIVSTISEIYIDAFANP 113
Query: 133 EKYQAKLSQRF----PSIKFVVSKKADSLYPVVSGASIVAK 169
K ++ SI + AD+ Y VV ASIVAK
Sbjct: 114 NKLLHYINSNCIASNRSINVYIEHGADNKYVVVGAASIVAK 154
>gi|229583211|ref|YP_002841610.1| ribonuclease HII [Sulfolobus islandicus Y.N.15.51]
gi|228013927|gb|ACP49688.1| ribonuclease HII [Sulfolobus islandicus Y.N.15.51]
Length = 212
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRG ++GPM+ + S + L + DSK L E+RE+LF+ + +
Sbjct: 3 IGIDEAGRGALIGPMIVAGVAISDSKLKFLKGIGVKDSKQLTRERREKLFDIIAITVDAF 62
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE-VYLDTVGDAEKY 135
V + P E+ + NLN++++D+ +I L++ + E V +D VG+ EK
Sbjct: 63 TVVKVF-PYEI-------DNYNLNDLTYDAVSKII---LSLSVFNPEIVTVDKVGE-EKP 110
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK--RSNF 173
+L ++ K V KAD L+ S ASI+AK R N+
Sbjct: 111 VIELIRKL-GYKSNVVHKADVLFVEASAASIIAKVIRDNY 149
>gi|144575201|gb|AAZ44026.2| ribonuclease HII [Mycoplasma synoviae 53]
Length = 242
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 4 EAALPK-WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKR 62
EA + K + + + GIDE G G P++ +Y P + L L DSK L +EK
Sbjct: 10 EAEIKKIYDKSKFVFGIDEVGVGEFFTPLIATAVYVPKDKLEILKNLGVKDSKLLSDEKI 69
Query: 63 EELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEI---SHDSAI-GLITRVLNIG 118
+++F D+K + +A +I + + K N NEI +H AI L +V
Sbjct: 70 KKVFNDIK--SHIQYASALISQKSYNILF---TKFNANEIKFLAHAEAINNLRKKVKKSE 124
Query: 119 ILLTEVYLDTVGDAEKYQAKLSQRFPSI--------KFVVSKKADSLYPVVSGASIVAK 169
+L+ + Y+++ KY K+ + + K + KKA+S Y V+ ASIVA+
Sbjct: 125 LLIIDAYVNSDPSFNKYYEKIIVSYKDLYGFSPWKEKIAILKKAESHYIEVAAASIVAR 183
>gi|71894629|ref|YP_278737.1| ribonuclease HII [Mycoplasma synoviae 53]
Length = 237
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 4 EAALPK-WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKR 62
EA + K + + + GIDE G G P++ +Y P + L L DSK L +EK
Sbjct: 5 EAEIKKIYDKSKFVFGIDEVGVGEFFTPLIATAVYVPKDKLEILKNLGVKDSKLLSDEKI 64
Query: 63 EELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEI---SHDSAI-GLITRVLNIG 118
+++F D+K + +A +I + + K N NEI +H AI L +V
Sbjct: 65 KKVFNDIK--SHIQYASALISQKSYNILF---TKFNANEIKFLAHAEAINNLRKKVKKSE 119
Query: 119 ILLTEVYLDTVGDAEKYQAKLSQRFPSI--------KFVVSKKADSLYPVVSGASIVAK 169
+L+ + Y+++ KY K+ + + K + KKA+S Y V+ ASIVA+
Sbjct: 120 LLIIDAYVNSDPSFNKYYEKIIVSYKDLYGFSPWKEKIAILKKAESHYIEVAAASIVAR 178
>gi|70606743|ref|YP_255613.1| ribonuclease HII [Sulfolobus acidocaldarius DSM 639]
gi|449066967|ref|YP_007434049.1| ribonuclease HII [Sulfolobus acidocaldarius N8]
gi|449069239|ref|YP_007436320.1| ribonuclease HII [Sulfolobus acidocaldarius Ron12/I]
gi|109896186|sp|Q4JA60.1|RNH2_SULAC RecName: Full=Ribonuclease HII; Short=RNase HII
gi|68567391|gb|AAY80320.1| ribonuclease HII [Sulfolobus acidocaldarius DSM 639]
gi|449035475|gb|AGE70901.1| ribonuclease HII [Sulfolobus acidocaldarius N8]
gi|449037747|gb|AGE73172.1| ribonuclease HII [Sulfolobus acidocaldarius Ron12/I]
Length = 212
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 20/159 (12%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++GIDEAGRG ++GPMV + ++ + L+ + DSK L +KRE LF V
Sbjct: 2 ILVGIDEAGRGSLIGPMVVAGVAIDSNFLKFLSEIGVKDSKKLTRKKREYLF---GVILE 58
Query: 75 VGWAVDIID--PRELSAKMLNKNKINLNEISHDSAIGLI--TRVLNIGILLTEVYLDTVG 130
+A+ ++ P E+ ++ NLNEI++ + I +I V N I V +D VG
Sbjct: 59 YSYAISLVKAYPEEIDSE-------NLNEITYRAMIQIIHSMSVYNPSI----VTVDKVG 107
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+A + ++ S + V AD Y VS ASI+AK
Sbjct: 108 NASAVEREIININSSPR--VENNADVKYVEVSAASIIAK 144
>gi|227826588|ref|YP_002828367.1| ribonuclease HII [Sulfolobus islandicus M.14.25]
gi|227829230|ref|YP_002831009.1| ribonuclease HII [Sulfolobus islandicus L.S.2.15]
gi|229577999|ref|YP_002836397.1| ribonuclease HII [Sulfolobus islandicus Y.G.57.14]
gi|229583752|ref|YP_002842253.1| ribonuclease HII [Sulfolobus islandicus M.16.27]
gi|238618674|ref|YP_002913499.1| ribonuclease HII [Sulfolobus islandicus M.16.4]
gi|284996585|ref|YP_003418352.1| hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|385772204|ref|YP_005644770.1| ribonuclease HII [Sulfolobus islandicus HVE10/4]
gi|385774919|ref|YP_005647487.1| ribonuclease HII [Sulfolobus islandicus REY15A]
gi|227455677|gb|ACP34364.1| ribonuclease HII [Sulfolobus islandicus L.S.2.15]
gi|227458383|gb|ACP37069.1| ribonuclease HII [Sulfolobus islandicus M.14.25]
gi|228008713|gb|ACP44475.1| ribonuclease HII [Sulfolobus islandicus Y.G.57.14]
gi|228018801|gb|ACP54208.1| ribonuclease HII [Sulfolobus islandicus M.16.27]
gi|238379743|gb|ACR40831.1| ribonuclease HII [Sulfolobus islandicus M.16.4]
gi|284444480|gb|ADB85982.1| hypothetical protein LD85_0182 [Sulfolobus islandicus L.D.8.5]
gi|323473667|gb|ADX84273.1| ribonuclease HII [Sulfolobus islandicus REY15A]
gi|323476318|gb|ADX81556.1| ribonuclease HII [Sulfolobus islandicus HVE10/4]
Length = 212
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 86/160 (53%), Gaps = 16/160 (10%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRG ++GPM+ + S + L + DSK L E+RE+LF D+ +
Sbjct: 3 IGIDEAGRGALIGPMIVAGVAISDSKLKFLKGIGVKDSKQLTRERREKLF-DIIASTVDA 61
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE-VYLDTVGDAEKY 135
+ V + P E+ + NLN++++D+ +I L++ + E V +D VG+ EK
Sbjct: 62 FTVVKVFPYEI-------DNYNLNDLTYDAVSKII---LSLSVFNPEIVTVDKVGE-EKP 110
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK--RSNF 173
+L ++ K V KAD L+ S ASI+AK R N+
Sbjct: 111 VIELIRKL-GYKSNVVHKADVLFVEASAASIIAKVIRDNY 149
>gi|223476982|ref|YP_002581715.1| Ribonuclease HII [Thermococcus sp. AM4]
gi|214032208|gb|EEB73038.1| Ribonuclease HII [Thermococcus sp. AM4]
Length = 230
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 17/159 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL--KVND 73
+ GIDEAGRGPV+GPMV + L L DSK L +RE LF+++ +++D
Sbjct: 7 LAGIDEAGRGPVIGPMVIAAVVVDEDKLGNLEELGVKDSKKLTPRRRERLFDEIIAQLDD 66
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDA 132
V II EL + ++ K+ LNE ++ + LN + + VY+D
Sbjct: 67 YV-----II---ELWPEEIDSRKVTLNEFEVEN----FAKALNSLKVRPDVVYIDAADVK 114
Query: 133 EKYQAKLSQRFPSIK--FVVSKKADSLYPVVSGASIVAK 169
E + R S K V +AD + VS ASI+AK
Sbjct: 115 EGRFGEAVGRLLSFKAEIVAEHRADDKFVPVSAASILAK 153
>gi|410669623|ref|YP_006921994.1| ribonuclease HII [Methanolobus psychrophilus R15]
gi|409168751|gb|AFV22626.1| ribonuclease HII [Methanolobus psychrophilus R15]
Length = 214
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 18/163 (11%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAG+GPV+GPM G + S L L ADSK L +KRE L ++
Sbjct: 3 IAGIDEAGKGPVIGPMCVGGVLMEESRINALKNLGVADSKKLTPKKREMLALQIEKYALQ 62
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE-- 133
+ ++I P+++ + + +NEI + +RVL + ++D +E
Sbjct: 63 VFVLEIT-PQQIDEL---RKLMTMNEI----MVLAFSRVLE-ELHPNVAFVDAADVSEER 113
Query: 134 -------KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+Y+ K S++ + + +AD +YP+VS ASIVAK
Sbjct: 114 FGKRLLLEYEKKHSEKAGCMSIISKHQADCIYPIVSAASIVAK 156
>gi|288561094|ref|YP_003424580.1| ribonuclease HII RnhB [Methanobrevibacter ruminantium M1]
gi|288543804|gb|ADC47688.1| ribonuclease HII RnhB [Methanobrevibacter ruminantium M1]
Length = 219
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 17/158 (10%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAGRGPVLGPMV + P ++ + + DSK + ++R L+ L +
Sbjct: 4 LGLDEAGRGPVLGPMVVAGIVIPEKKEKIIERMGVKDSKRITPKRRAVLYRKL----TRM 59
Query: 77 WAVDIIDPRELSAK---MLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
+ + + E+SAK +L +NLN+I + + +I ++ I+ +D++ E
Sbjct: 60 FDYETV---EISAKDIDLLRAKGVNLNQIEKLAMMRIIAKLKADTII-----IDSLDIKE 111
Query: 134 KYQAKLSQRF--PSIKFVVSKKADSLYPVVSGASIVAK 169
+ Q F K + KAD Y VV ASI+AK
Sbjct: 112 GRLEEEMQNFVGEGSKVIAEHKADDKYIVVGAASIIAK 149
>gi|435851233|ref|YP_007312819.1| ribonuclease H, mammalian HI/archaeal HII subfamily
[Methanomethylovorans hollandica DSM 15978]
gi|433661863|gb|AGB49289.1| ribonuclease H, mammalian HI/archaeal HII subfamily
[Methanomethylovorans hollandica DSM 15978]
Length = 216
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 32/170 (18%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAG+GPV+GPM G + +L L ADSK L +KRE L +
Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVLADKGKLDSLKNLGVADSKKLTPKKREHLAHQINKYAHK 62
Query: 76 GWAVDIIDPRELSA--KMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV-----YLDT 128
+ + + P ++ K+++ N+I VL +L E+ Y+D
Sbjct: 63 VYVFE-VSPSQIDELRKVMSMNQI---------------MVLGFSRVLEELQPDMAYVDA 106
Query: 129 VG-DAEKY----QAKLSQRFP----SIKFVVSKKADSLYPVVSGASIVAK 169
+A ++ +A+ ++++P + V +AD+ YP+VS ASIVAK
Sbjct: 107 ADVNAARFGTNLKAQYAKKYPEKSEELTVVSEHQADATYPIVSAASIVAK 156
>gi|389860356|ref|YP_006362595.1| ribonuclease HII [Thermogladius cellulolyticus 1633]
gi|388525259|gb|AFK50457.1| ribonuclease HII [Thermogladius cellulolyticus 1633]
Length = 231
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 75/160 (46%), Gaps = 12/160 (7%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++GIDEAGRGP++G MV + S L L DSKTL R + +
Sbjct: 4 LVIGIDEAGRGPLIGDMVVTGVAVSSSVISRLEQLGVRDSKTLSPGARSKARAAVLSEVP 63
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSA--IGLITRVLNIGILLTEVYLDTVGDA 132
V + + E+ +K NLN + ++A + L+ R L E+Y+D + A
Sbjct: 64 VSFVSIYVHAAEIDSK-------NLNTATLEAAKRVLLLVRELAWRGGEVEIYVDEIKGA 116
Query: 133 EKYQAKLSQRFPSIK---FVVSKKADSLYPVVSGASIVAK 169
E + S K FV+ +ADS YP VS ASI+AK
Sbjct: 117 ESKLRRFSMELYGDKLVVFVMEPEADSKYPAVSLASIIAK 156
>gi|20093626|ref|NP_613473.1| ribonuclease HII [Methanopyrus kandleri AV19]
gi|74561281|sp|Q8TYV5.1|RNH2_METKA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|19886492|gb|AAM01403.1| Ribonuclease HII [Methanopyrus kandleri AV19]
Length = 210
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 17/155 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+MGIDEAGRGPV GPMV + P ++ L L DSK L R L L ++ +
Sbjct: 4 VMGIDEAGRGPVFGPMVVAGVLAP---KRELG-LGARDSKELTRSARRRLIRALMSDERL 59
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ I+ P E+ + + K + ++ L+ R + EV LD G+
Sbjct: 60 RVDLRIVWPWEIDEEGVAKAEF-------EAIRELVRRAMP-----DEVILDKPGNYSPE 107
Query: 136 QAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAK 169
+ + P I + ++AD+ Y VVS ASIVAK
Sbjct: 108 RLRRELDLPEGINLIAEERADAKYEVVSAASIVAK 142
>gi|148643039|ref|YP_001273552.1| ribonuclease HII [Methanobrevibacter smithii ATCC 35061]
gi|222445276|ref|ZP_03607791.1| hypothetical protein METSMIALI_00904 [Methanobrevibacter smithii
DSM 2375]
gi|261350165|ref|ZP_05975582.1| ribonuclease HII [Methanobrevibacter smithii DSM 2374]
gi|189043626|sp|A5ULV6.1|RNH2_METS3 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|148552056|gb|ABQ87184.1| ribonuclease HII, RnhB [Methanobrevibacter smithii ATCC 35061]
gi|222434841|gb|EEE42006.1| ribonuclease HII [Methanobrevibacter smithii DSM 2375]
gi|288860951|gb|EFC93249.1| ribonuclease HII [Methanobrevibacter smithii DSM 2374]
Length = 207
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 77/156 (49%), Gaps = 11/156 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++GIDEAGRG VLGP+V + P L + DSK L +R L LK
Sbjct: 3 VLGIDEAGRGSVLGPLVIAGVIVPEKMDIVLERMGVKDSKRLTPNRRTILSRKLK--KMF 60
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
+ + +I +++ + + INLNEI IG+ + N+ + +D V AE+
Sbjct: 61 EYDLVVISAQDIDN--MRADGINLNEIER---IGMEKILSNLN--PEKAIVDAVDIKAER 113
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKR 170
+Q KL+ + V KAD Y VS ASI+AK+
Sbjct: 114 FQNKLAND-TGVNVVAEHKADDNYIEVSAASIIAKQ 148
>gi|449708101|gb|EMD47624.1| ribonuclease H2 subunit A, putative [Entamoeba histolytica KU27]
Length = 78
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
+GIDEAGRGPVLGPMVY + + + ++T+ F DSK L RE+LF D+K
Sbjct: 17 IGIDEAGRGPVLGPMVYSAFF--TTNTEVISTMGFHDSKILSRTMREKLFTDIK 68
>gi|315230435|ref|YP_004070871.1| ribonuclease HII [Thermococcus barophilus MP]
gi|315183463|gb|ADT83648.1| ribonuclease HII [Thermococcus barophilus MP]
Length = 227
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 33/165 (20%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGPV+GP+V + L L DSK L +RE+LF ++
Sbjct: 8 GIDEAGRGPVIGPLVIAAVVIDEKNLSKLEALGVRDSKKLTPRRREKLFNEI-------- 59
Query: 78 AVDIIDPR---ELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDAE 133
++++D ELS + +++ + +NE ++ + RVLN + + +Y+D E
Sbjct: 60 -IELLDDYAIIELSPEQIDEREGTMNEFEIENFV----RVLNSLKVKPDVLYIDAADIKE 114
Query: 134 KYQAKLSQRFPSI---------KFVVSKKADSLYPVVSGASIVAK 169
K RF I K + KAD+ Y VS ASI+AK
Sbjct: 115 K-------RFGEIIGKGLNFSPKIIAEHKADAKYLPVSAASILAK 152
>gi|387593201|gb|EIJ88225.1| hypothetical protein NEQG_01669 [Nematocida parisii ERTm3]
gi|387596086|gb|EIJ93708.1| hypothetical protein NEPG_01280 [Nematocida parisii ERTm1]
Length = 354
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 8 PKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE 67
PK N +GIDEAGRGP+ GP+VYG +Y + + T+ + DSK +K++KR
Sbjct: 39 PKNLGNSYKVGIDEAGRGPLAGPLVYGLVY----WAKDPKTVIYNDSKKVKKQKRGLQHI 94
Query: 68 DLKVNDSVGWAVDIIDPRELSAKML 92
DL +++VG+ + I P +S ML
Sbjct: 95 DLYRDENVGFIIRCISPLFISINML 119
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 91 MLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFV- 149
+NK NLN++S D + +++ + ++E+++DTVG+ + K+ R K +
Sbjct: 181 FVNKQCQNLNDLSIDCILNMLSMCAGFNVPISEIFIDTVGNKKTLHEKVKNRMKEYKTIK 240
Query: 150 ---VSKKADSLYPVVSGASIVAK 169
V +KADS Y V ASI+AK
Sbjct: 241 KITVEEKADSKYQTVGAASILAK 263
>gi|419705468|ref|ZP_14233006.1| ribonuclease [Mycoplasma canis UFG1]
gi|419706119|ref|ZP_14233650.1| ribonuclease [Mycoplasma canis UFG4]
gi|384394771|gb|EIE41205.1| ribonuclease [Mycoplasma canis UFG1]
gi|384394924|gb|EIE41357.1| ribonuclease [Mycoplasma canis UFG4]
Length = 200
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 70/154 (45%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G DEAGRGPV GP+V C+ P Y + DSK L E+KRE LFE++K N ++
Sbjct: 14 VAGCDEAGRGPVCGPLVAACVILPLDYANEM----IDDSKKLSEKKREILFEEIKQN-AI 68
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ ++I E IN +S IG++ + + I V D
Sbjct: 69 DYYIEIRSVDE----------INRTNPKKESQIGMVNAIKKLKIKPEYVLTDF------- 111
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
K+ P + K D L ++ ASI+AK
Sbjct: 112 -EKIDIEIPQTNLI---KGDQLSLNIAAASILAK 141
>gi|14591420|ref|NP_143500.1| ribonuclease HII [Pyrococcus horikoshii OT3]
gi|7227917|sp|O59351.1|RNH2_PYRHO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|50513813|pdb|1UAX|A Chain A, Crystal Structure Of The Ribonuclease H2 From Pyrococcus
Horikoshii Ot3
gi|50513814|pdb|1UAX|B Chain B, Crystal Structure Of The Ribonuclease H2 From Pyrococcus
Horikoshii Ot3
gi|3258079|dbj|BAA30762.1| 220aa long hypothetical ribonuclease H II [Pyrococcus horikoshii
OT3]
Length = 220
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 80/158 (50%), Gaps = 15/158 (9%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGPV+GP+V G + L + DSK L +RE+LF L ++
Sbjct: 3 VAGVDEAGRGPVIGPLVIGVAVIDEKNIERLRDIGVKDSKQLTPGQREKLFSKL-IDILD 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ V ++ P+E+ + + N++ A + + ++ I ++Y+D+ K
Sbjct: 62 DYYVLLVTPKEIDERHHSMNELE--------AEKFVVALNSLRIKPQKIYVDSADVDPKR 113
Query: 136 QAKLSQRFPSIKF----VVSKKADSLYPVVSGASIVAK 169
A L + +K+ + KAD+ Y +VS ASI+AK
Sbjct: 114 FASLIK--AGLKYEATVIAEHKADAKYEIVSAASIIAK 149
>gi|225389108|ref|ZP_03758832.1| hypothetical protein CLOSTASPAR_02854 [Clostridium asparagiforme
DSM 15981]
gi|225044826|gb|EEG55072.1| hypothetical protein CLOSTASPAR_02854 [Clostridium asparagiforme
DSM 15981]
Length = 217
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
+A+ I GIDEAGRGP+ GP+ G + P + L+ DSK L E++REELF +
Sbjct: 27 YAACAMICGIDEAGRGPLAGPVAAGAVILP----KDCTLLHLNDSKKLSEKRREELFVQI 82
Query: 70 KVNDSVGWAVDIIDPREL 87
K +V W V I+ P +
Sbjct: 83 K-EQAVAWCVGIVGPERI 99
>gi|156938224|ref|YP_001436020.1| RNase HII [Ignicoccus hospitalis KIN4/I]
gi|156567208|gb|ABU82613.1| RNase HII [Ignicoccus hospitalis KIN4/I]
Length = 215
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 11/157 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGPV+G M + + L +L +SK L KR + + +
Sbjct: 6 VAGIDEAGRGPVIGSMFVALVAIEQDQLEKLVSLGLKESKMLTPNKRRYFY------NLI 59
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
++ +E+ A+ ++K NL+E++ + L+ LN + + V +D VG+ K
Sbjct: 60 MKTAKLVLIKEVKAEEIDKR--NLSELTIEVMKELLETALN-KVKIDVVCVDIVGNGAKQ 116
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSN 172
+ L + FP + +V KK D+ P + ASIVAK +
Sbjct: 117 RRALGEVFPDV--IVMKKGDASCPAAAAASIVAKEAR 151
>gi|335045947|ref|ZP_08538970.1| ribonuclease HII [Oribacterium sp. oral taxon 108 str. F0425]
gi|333759733|gb|EGL37290.1| ribonuclease HII [Oribacterium sp. oral taxon 108 str. F0425]
Length = 214
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+V C P Y LN DSK + E++RE LFEDL+ +++
Sbjct: 29 IAGVDEAGRGPLAGPVVAACAVIPLDY--PFYYLN--DSKKMSEKRRESLFEDLQ-KEAI 83
Query: 76 GWAVDIIDPREL 87
+ + I+ P +
Sbjct: 84 AFGIGIVSPERI 95
>gi|289582357|ref|YP_003480823.1| ribonuclease HII [Natrialba magadii ATCC 43099]
gi|448282223|ref|ZP_21473512.1| ribonuclease HII [Natrialba magadii ATCC 43099]
gi|289531910|gb|ADD06261.1| ribonuclease HII [Natrialba magadii ATCC 43099]
gi|445576857|gb|ELY31305.1| ribonuclease HII [Natrialba magadii ATCC 43099]
Length = 221
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 14/158 (8%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAG+GPVLG M ++ ++T+ ADSK L +R+EL L+ +D +G
Sbjct: 3 IGVDEAGKGPVLGSMFAAAVHV---ERETVLPDGIADSKRLTPARRDELAATLREDDRIG 59
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEIS---HDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
V E++ ++ + ++N +S H AI + + +T + DA+
Sbjct: 60 VGV-----AEITTAQIDDPETDMNSLSVRAHAEAIEAVAADTVLEAPITGLCDACDTDAD 114
Query: 134 KYQAKLSQRFPSIKFVVSKK--ADSLYPVVSGASIVAK 169
++ +++ R ++ +S + AD P+V ASI+AK
Sbjct: 115 RFARRVADRC-GLECTISAEHGADDDSPIVGAASIIAK 151
>gi|419704176|ref|ZP_14231726.1| ribonuclease [Mycoplasma canis PG 14]
gi|384392964|gb|EIE39416.1| ribonuclease [Mycoplasma canis PG 14]
Length = 200
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G DEAGRGPV GP+V C+ P Y + DSK L E+KRE LFE++K N ++
Sbjct: 14 VAGCDEAGRGPVCGPLVAACVILPLDYANEM----IDDSKKLSEKKREILFEEIKQN-AI 68
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ ++I E IN +S IG+ + + I V D
Sbjct: 69 DYYIEIRSVDE----------INKTNPKKESQIGMANAIKKLKIKPEHVLTDF------- 111
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
K+ P + K D L ++ ASI+AK
Sbjct: 112 -EKIDIEIPQTNLI---KGDQLSLNIAAASILAK 141
>gi|196228537|ref|ZP_03127404.1| Ribonuclease H [Chthoniobacter flavus Ellin428]
gi|196227940|gb|EDY22443.1| Ribonuclease H [Chthoniobacter flavus Ellin428]
Length = 202
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 58/100 (58%), Gaps = 13/100 (13%)
Query: 9 KWASNPCIM--GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF 66
K ++ C++ GIDE GRGP+ GP+V + P ++ TLN DSK L E+RE+++
Sbjct: 6 KLRADGCVLVAGIDEVGRGPLAGPVVAAAVILPEKFRHK--TLN--DSKKLSAEQREKIY 61
Query: 67 EDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDS 106
+L ++V W V +++ E+ ++IN+ SH++
Sbjct: 62 AELTTRENVHWTVCVVEVEEI-------DRINILRASHEA 94
>gi|395217031|ref|ZP_10401513.1| ribonuclease HII [Pontibacter sp. BAB1700]
gi|394455164|gb|EJF09694.1| ribonuclease HII [Pontibacter sp. BAB1700]
Length = 202
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 24/172 (13%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREE 64
A LP ++ GIDEAGRG + GP+V + P Y L LN DSK L ++R +
Sbjct: 2 ALLPNYSGYTLEAGIDEAGRGCLAGPVVAAAVILPPDYSHAL--LN--DSKQLSHKQRLQ 57
Query: 65 LFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV 124
L D+ V D+V WA+ P E+ ++IN+ + ++ + + R + G+ L
Sbjct: 58 LRVDI-VRDAVAWAIGEASPAEI-------DQINILQATYLA----MHRAIE-GLALEPE 104
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
YL + D +++A + +++ K D Y ++ AS++AK E M
Sbjct: 105 YL--IVDGNRFKA-----YGALRHTCVVKGDGRYLSIAAASVLAKTHRDELM 149
>gi|424814493|ref|ZP_18239671.1| ribonuclease H, archaeal HII subfamily [Candidatus Nanosalina sp.
J07AB43]
gi|339758109|gb|EGQ43366.1| ribonuclease H, archaeal HII subfamily [Candidatus Nanosalina sp.
J07AB43]
Length = 219
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 19/161 (11%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++GIDEAGRGPV+G M G L + DSK L + KR+ ++ D++
Sbjct: 3 VLGIDEAGRGPVIGSMFIGGFVTDEKDLGRLEDIGVKDSKKLSDNKRD------RIRDNL 56
Query: 76 GWAVDIIDPRELSAKMLNK--NKINLNEISHDSAIGLITRVLNIGILLTEVYLD-TVGDA 132
G A D I E +A ++ + +N+I I RV++ +V +D DA
Sbjct: 57 GSAGDSI-VEEFTASSIDSMMESMTINQIE----IKGFARVID-QTDPDKVIMDLPEPDA 110
Query: 133 EKYQAKLSQRFPS----IKFVVSKKADSLYPVVSGASIVAK 169
E++ K+ + S ++F AD +PVVS ASIVAK
Sbjct: 111 EEFIGKIKKSMNSDNTDMEFKAEHGADDSFPVVSAASIVAK 151
>gi|15920736|ref|NP_376405.1| ribonuclease HII [Sulfolobus tokodaii str. 7]
gi|74574695|sp|Q974Z3.1|RNH2_SULTO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|342306230|dbj|BAK54319.1| ribonuclease HII [Sulfolobus tokodaii str. 7]
Length = 208
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 12/155 (7%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++GIDEAGRG ++GPM+ + + L + DSK L +RE+LF D+ + S
Sbjct: 2 IVVGIDEAGRGSLIGPMIVAGVAIKNDRLKFLKNIGVKDSKQLTRNRREKLF-DIICSYS 60
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
G+ + + P E+ ++ NLNE+++ + I +I ++ + + +D VG+ +
Sbjct: 61 EGFTIVKVSPEEIDSE-------NLNELTYKAMIKIIYSLVEFKPI--RISIDKVGNTKV 111
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+ ++ + V + AD + S ASI+AK
Sbjct: 112 VEQEIIKLGMEPNIVTN--ADVYFVEASAASIIAK 144
>gi|336122129|ref|YP_004576904.1| ribonuclease HII [Methanothermococcus okinawensis IH1]
gi|334856650|gb|AEH07126.1| ribonuclease HII [Methanothermococcus okinawensis IH1]
Length = 305
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 78/195 (40%), Gaps = 49/195 (25%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAGRGPVLGPMV + L DSK L KREEL++ + N V
Sbjct: 41 LGLDEAGRGPVLGPMVIALVKATEKDLPKFDELGLKDSKKLSRHKREELYKIIMNNYEVK 100
Query: 77 WAVDIIDPRELSAKMLNK--NKINLNEISHDSAIGLITRVLN------------------ 116
+ L AK ++K K NLN+I LI VL
Sbjct: 101 SII-------LEAKDIDKMMEKTNLNKIEIMVFSKLINSVLKEEYKDYKNKNHKLNNKLN 153
Query: 117 -----------------IGILLTEVYLDTVGDAEK-----YQAKLSQRFPSIKFVVSKKA 154
I ++Y+D EK ++KL +IK + KA
Sbjct: 154 NNEVNDKINSNKVNNNKINNKKIDIYIDACSSNEKAFSNQIKSKLVVYNDNIKIIAEHKA 213
Query: 155 DSLYPVVSGASIVAK 169
D Y +VS ASIVAK
Sbjct: 214 DDKYKIVSAASIVAK 228
>gi|294495980|ref|YP_003542473.1| RNase HII [Methanohalophilus mahii DSM 5219]
gi|292666979|gb|ADE36828.1| RNase HII [Methanohalophilus mahii DSM 5219]
Length = 215
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 21/164 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAG+GPV+GPM + S L L ADSK L ++RE L ++
Sbjct: 3 IAGIDEAGKGPVIGPMCVAGVIMDESKINALKNLGVADSKKLSPKRRENLARQIRK---- 58
Query: 76 GWAVDIIDPRELSAKMLN--KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DA 132
D I +E+ A ++ +N +++N+I G + + N+ L Y+D +A
Sbjct: 59 --YADGIFIQEIEACQIDELRNIMSMNDI---MIRGFSSVLENLKPDLA--YVDAADVNA 111
Query: 133 EKYQAKL-------SQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E++ KL +R + + AD +YP+VS ASI+AK
Sbjct: 112 ERFGKKLLAAFEKKHEREKKPEIISEHGADDIYPIVSAASIIAK 155
>gi|448458612|ref|ZP_21596278.1| ribonuclease HII [Halorubrum lipolyticum DSM 21995]
gi|445809124|gb|EMA59171.1| ribonuclease HII [Halorubrum lipolyticum DSM 21995]
Length = 234
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 17/173 (9%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAG+GPVLGPMV + ++ + DSK L +RE + E ++ D V
Sbjct: 3 LGVDEAGKGPVLGPMVAAAVLA----DPSVLPADVDDSKRLAPARRESIDEAIRATDRVA 58
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGL-----------ITRVLNIGILLTEVY 125
V ++P E+ + N + + + + L + V + G +
Sbjct: 59 VGVAFVEPAEIDRPDTDMNTLTVRGQARAARAALGGAVAADLDEPVRVVADAGDTSESRF 118
Query: 126 LDTVGD--AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
+G+ A A P++ + AD PVV AS+VAK + ERM
Sbjct: 119 ARRLGEFVAGTGSATTDTDLPAVDVSAAHGADEDDPVVGAASVVAKVARDERM 171
>gi|327401115|ref|YP_004341954.1| ribonuclease HII [Archaeoglobus veneficus SNP6]
gi|327316623|gb|AEA47239.1| ribonuclease HII [Archaeoglobus veneficus SNP6]
Length = 212
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 14/156 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQ--TLATLNFADSKTLKEEKREELFEDLKVND 73
+ GIDEAG+GPV+GPMV C C CS ++ L + DSK L ++REEL ++K
Sbjct: 4 VAGIDEAGKGPVIGPMVV-CGVC-CSEEELVELEKIGVRDSKRLSPKRREELAREIKKLS 61
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
+V V ++P +L M K +NEI D +I LN + ++D+
Sbjct: 62 NV--YVIKLEPEKLDRLMEKK---TINEILTDCYAEIINE-LNPDL----TFVDSPDVIP 111
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+ ++ ++ + +AD L PVVS ASIVAK
Sbjct: 112 ERLSEALKKRTGKEVKAMHRADVLKPVVSAASIVAK 147
>gi|315425616|dbj|BAJ47275.1| ribonuclease HII [Candidatus Caldiarchaeum subterraneum]
gi|343484489|dbj|BAJ50143.1| ribonuclease HII [Candidatus Caldiarchaeum subterraneum]
Length = 189
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRG V+GP+V + L L ADSKTL +REE+FE L+ + V
Sbjct: 2 LCGVDEAGRGCVVGPLVVAAVAAERDELPLLRALGVADSKTLSPRRREEIFEKLRASFRV 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISH 104
G+ ++ PR +S+ + LN++ +
Sbjct: 62 GYM--LVSPRRISSCLRVNGGDGLNDLEY 88
>gi|444526357|gb|ELV14308.1| Ribonuclease H2 subunit A [Tupaia chinensis]
Length = 244
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%)
Query: 115 LNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
L+ T V++DTVG + YQ +L QRFP I+ V KAD+L+PVVS ASI AK
Sbjct: 74 LDTPTWPTMVFVDTVGLPDTYQERLQQRFPGIEVTVKAKADALFPVVSAASICAK 128
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 26/37 (70%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATL 49
PC++G+DEAGRGPVLGPMVY YCP S L L
Sbjct: 27 EPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEAL 63
>gi|218283550|ref|ZP_03489540.1| hypothetical protein EUBIFOR_02130 [Eubacterium biforme DSM 3989]
gi|218215818|gb|EEC89356.1| hypothetical protein EUBIFOR_02130 [Eubacterium biforme DSM 3989]
Length = 202
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W N ++G+DEAGRGP+ GP++ + P Y L DSK L E+KRE LF+ +
Sbjct: 11 WDQNQSVLGMDEAGRGPIAGPLMVAGVIFPKGYHNEL----IDDSKKLSEKKREALFKTI 66
Query: 70 KVNDSVGWAVDIIDPRELSAK 90
+ D++ + + ++D + + K
Sbjct: 67 -IQDALYYQILVVDEKTIDKK 86
>gi|410720630|ref|ZP_11359984.1| RNase HII [Methanobacterium sp. Maddingley MBC34]
gi|410600757|gb|EKQ55282.1| RNase HII [Methanobacterium sp. Maddingley MBC34]
Length = 204
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 74/158 (46%), Gaps = 16/158 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV---N 72
I+GIDEAGRG VLGP+V + + L L DSK + ++R L +K
Sbjct: 3 ILGIDEAGRGSVLGPLVVCGVAVENDRVKYLERLGLKDSKKVSPKRRIVLSRKIKRIAEC 62
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-D 131
+V ID L +NLNEI + I R++ T ++D++
Sbjct: 63 HTVHITAHDID-------TLRSRDVNLNEIEKIA----INRIIGDANAST-CFIDSMDVK 110
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E+ ++L ++ V KAD YP+VS ASI+AK
Sbjct: 111 PERLTSELETMHSQLRVVAEHKADDRYPIVSAASIIAK 148
>gi|315427583|dbj|BAJ49182.1| ribonuclease HII [Candidatus Caldiarchaeum subterraneum]
Length = 212
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRG V+GP+V + L L ADSKTL +REE+FE L+ + V
Sbjct: 2 LCGVDEAGRGCVVGPLVVAAVAAERDELPLLRALGVADSKTLSPRRREEIFEKLRASFRV 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISH 104
G+ ++ PR +S+ + LN++ +
Sbjct: 62 GYM--LVSPRRISSCLRVNGGDGLNDLEY 88
>gi|448733907|ref|ZP_21716147.1| ribonuclease HII [Halococcus salifodinae DSM 8989]
gi|445801893|gb|EMA52208.1| ribonuclease HII [Halococcus salifodinae DSM 8989]
Length = 223
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 17/161 (10%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
G+DEAGRGPVLG + C+ + DSK L +RE L ++L+ +D +
Sbjct: 5 FGVDEAGRGPVLGSLFVACVRA----DPAVLPAGIDDSKRLSPARRETLADELRADDRIA 60
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG------ 130
A RE++ ++ +LN ++ ++A I V +IG G
Sbjct: 61 VAT-----REVTPSAIDAPDTDLNALTIEAAGATIDSVASIGADAKATADGLAGVVDACD 115
Query: 131 -DAEKYQAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAK 169
D E++ ++ + + ++ AD + +V AS+VAK
Sbjct: 116 TDTERFGRRVHEAATADVEITAEHGADEEHALVGAASVVAK 156
>gi|448355147|ref|ZP_21543900.1| ribonuclease HII [Natrialba hulunbeirensis JCM 10989]
gi|445635912|gb|ELY89077.1| ribonuclease HII [Natrialba hulunbeirensis JCM 10989]
Length = 221
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAG+GP LG M ++ ++T+ ADSK L +R+EL L+ ND +G
Sbjct: 3 IGVDEAGKGPALGSMFAAAVHV---ERETVLPDGIADSKRLTPARRDELAAILRENDQIG 59
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEIS---HDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
V E++ ++ + ++N +S H AI + + ++ DA+
Sbjct: 60 VGV-----AEITTAQIDDPETDMNSLSVQAHAEAIEAVAADTGLETPISGHCDACDTDAD 114
Query: 134 KYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAK 169
++ +++ R AD PVV ASI+AK
Sbjct: 115 RFARRVADRCGLECTITAEHGADDDSPVVGAASIIAK 151
>gi|320100359|ref|YP_004175951.1| ribonuclease HII [Desulfurococcus mucosus DSM 2162]
gi|319752711|gb|ADV64469.1| ribonuclease HII [Desulfurococcus mucosus DSM 2162]
Length = 255
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 83/170 (48%), Gaps = 22/170 (12%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF-EDL 69
A + +G+DEAGRGP +G MV + P ++L ++ DSK L+ R ELF E L
Sbjct: 3 AGDTIEIGVDEAGRGPFVGDMVIVGVIGPSRVFESLVSIGLKDSKALEPVARRELFWEIL 62
Query: 70 KVN-DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLT------ 122
N D V W ++ P ++ N+NE+ + I I ++L+ L
Sbjct: 63 SSNVDIVAW---LVSP-------FTIDRGNMNELEY-IRICRILKLLSYSRLARSKPGNS 111
Query: 123 -EVYLDTVGDAEKYQAKLSQRF--PSIKFVVSKKADSLYPVVSGASIVAK 169
+Y+D V + + + R ++ V+ +AD+ YP VS AS++AK
Sbjct: 112 LRIYVDEVKGYGESVRECAMRIYGEHVEVVMEPEADARYPAVSAASVIAK 161
>gi|355677531|ref|ZP_09060434.1| ribonuclease HII [Clostridium citroniae WAL-17108]
gi|354813096|gb|EHE97709.1| ribonuclease HII [Clostridium citroniae WAL-17108]
Length = 219
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGP+ GP+ G + P + L DSK L E++REELFE++K +
Sbjct: 34 VCGIDEAGRGPLAGPVAAGAVILP----KDCRILYLNDSKKLSEKRREELFEEIK-EKAA 88
Query: 76 GWAVDIIDP 84
W+V I+ P
Sbjct: 89 AWSVGIVSP 97
>gi|419704823|ref|ZP_14232367.1| ribonuclease [Mycoplasma canis UF33]
gi|384392811|gb|EIE39264.1| ribonuclease [Mycoplasma canis UF33]
Length = 200
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G DEAGRGPV GP+V C+ P Y + DSK L E+KRE LFE++K N ++
Sbjct: 14 VAGCDEAGRGPVCGPLVAACVILPLDYANEM----IDDSKKLSEKKREILFEEIKQN-AI 68
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ ++I E IN +S IG+ + + I V D
Sbjct: 69 DYYIEIRSVDE----------INRTNPKKESQIGMANAIKKLKIKPEYVLTDF------- 111
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
K+ P + K D L ++ ASI+AK
Sbjct: 112 -EKIDIEIPQTNLI---KGDQLSLNIAAASILAK 141
>gi|257387378|ref|YP_003177151.1| ribonuclease HII [Halomicrobium mukohataei DSM 12286]
gi|257169685|gb|ACV47444.1| ribonuclease HII [Halomicrobium mukohataei DSM 12286]
Length = 210
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 16/155 (10%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
G+DEAG+GPVLG M + C P DSK + +E+RE L E ++ +V
Sbjct: 3 FGVDEAGKGPVLGSMFAAAVRCDPGDLPD-----GVGDSKGIPDERRERLAEAIRSVAAV 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
G A E++ + ++ + ++N ++ + ++ V G+ DT DAE++
Sbjct: 58 GLA-------EITPERIDDPETDMNTLTVAAHAEALSAVATDGLSGLVDAGDT--DAERF 108
Query: 136 QAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAK 169
+++ R S I + AD P+V ASIVAK
Sbjct: 109 GRRVADRVDSEIDLGSAHGADETDPLVGAASIVAK 143
>gi|378755758|gb|EHY65784.1| hypothetical protein NERG_01391 [Nematocida sp. 1 ERTm2]
Length = 352
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 98/228 (42%), Gaps = 70/228 (30%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRGP+ GP+VY Y + T + DSK + ++KR +DL + SVG
Sbjct: 49 VGIDEAGRGPLAGPLVYSMAY----WVSDPDTKVYNDSKKVGKQKRVMQHKDLYKDKSVG 104
Query: 77 WAVDIIDPRELSAKML----NKNKINLNEI-------------------------SHDSA 107
+ + + P +S ML +K +L +I S+ +
Sbjct: 105 FIIRCLSPLFISINMLCTIRDKENKSLKKIPAKKTAKRQKLEPGIAEEAGKNKEPSYSTI 164
Query: 108 IGLITRV-----------------LNIGILL-------------TEVYLDTVGDAEKYQA 137
+ ++ + L+IG +L EV++DTVG+ + +A
Sbjct: 165 LHMMGKTDLGPPIFVSRIRQNLNDLSIGCILELLNTSIKSGVQMQEVFVDTVGNKQTLRA 224
Query: 138 KLSQRFPSIKFV----VSKKADSLYPVVSGASIVAKRSN---FERMDI 178
K+ K + V +KADS Y VV ASI+AK + FE D+
Sbjct: 225 KVVDLLKDSKGIKNVTVEEKADSKYQVVGAASILAKVTRDMFFENFDL 272
>gi|325960150|ref|YP_004291616.1| ribonuclease Hii [Methanobacterium sp. AL-21]
gi|325331582|gb|ADZ10644.1| ribonuclease HII [Methanobacterium sp. AL-21]
Length = 204
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 18/159 (11%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRG VLGP+V + + L L DSK + ++R L+ +K
Sbjct: 3 IVGIDEAGRGSVLGPLVVCGVSIEEERLKYLERLKLKDSKKVTPKRRIVLYRKIK----- 57
Query: 76 GWAVDIIDPRELSA---KMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV-YLDTVG- 130
+ P +SA +L +NLNEI AI I IG ++ Y+D +
Sbjct: 58 --KIADCHPVHISAADIDLLRSKDVNLNEIEK-IAIKQI-----IGNCDPDISYIDCIDV 109
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E++ ++ ++K V AD YP+VS ASIVAK
Sbjct: 110 KPERFTNEIENFQENLKVVAEHGADDTYPIVSAASIVAK 148
>gi|240103148|ref|YP_002959457.1| ribonuclease HII [Thermococcus gammatolerans EJ3]
gi|239910702|gb|ACS33593.1| Ribonuclease HII (rnhB) [Thermococcus gammatolerans EJ3]
Length = 226
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 17/159 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL--KVND 73
I GIDEAGRGPV+GPMV + ++L L DSK L +RE LF+++ +++D
Sbjct: 5 IAGIDEAGRGPVIGPMVIAAVVVDEEKLKSLEELGVRDSKKLTPGRRERLFDEIIAQLDD 64
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDA 132
V II EL + ++ ++ LNE ++ ++ LN + + VY+D
Sbjct: 65 YV-----II---ELWPEEIDSREVTLNEFEVEN----FSKALNSLKVKPDVVYIDAADVK 112
Query: 133 EKYQAKLSQRFPSIK--FVVSKKADSLYPVVSGASIVAK 169
E + + K V +AD + VS ASI+AK
Sbjct: 113 EGRFGEAIGKLLKFKAEIVAEHRADDKFVPVSAASILAK 151
>gi|374629635|ref|ZP_09702020.1| RNase HII [Methanoplanus limicola DSM 2279]
gi|373907748|gb|EHQ35852.1| RNase HII [Methanoplanus limicola DSM 2279]
Length = 212
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 82/157 (52%), Gaps = 16/157 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAG+G V+GPMV G + FADSK L ++RE L+ +L
Sbjct: 2 ICGIDEAGKGSVIGPMVIGGI--SGVKLSDFEERGFADSKKLSPKRRESLYGEL--TREF 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEI-SHDSAIGLITRVLNIGILLTEVYLDTVGDAE- 133
+V +I ++ K + +++N+I +H A + + L+ G Y+D E
Sbjct: 58 KTSVIVISAPDIDQK---RETMSMNDIVAHGHA--SVIKQLSAGT----AYVDACDVNEA 108
Query: 134 KYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAK 169
+Y K++ + V SK KAD++YPVV+ ASIVAK
Sbjct: 109 RYGNKIADLLDNKVTVYSKHKADNIYPVVAAASIVAK 145
>gi|82701801|ref|YP_411367.1| ribonuclease H [Nitrosospira multiformis ATCC 25196]
gi|97189026|sp|Q2YB96.1|RNH2_NITMU RecName: Full=Ribonuclease HII; Short=RNase HII
gi|82409866|gb|ABB73975.1| RNase HII [Nitrosospira multiformis ATCC 25196]
Length = 199
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 74/166 (44%), Gaps = 31/166 (18%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
P + G+DEAGRGP+ GP+ C+ P S L ADSKTL E KR L +K
Sbjct: 7 PWVCGVDEAGRGPLAGPVFAACVILDPASPIDGL-----ADSKTLTEGKRNSLTLAIKAY 61
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
S+ WA+ RE+ N + + ++ AIG + + V +D
Sbjct: 62 -SIAWAIGFASVREID----RLNILQASLLAMKRAIG------KLPVTPARVLVD----- 105
Query: 133 EKYQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKRSNFERM 176
P +KF V+ + DSL P +S ASI+AK + M
Sbjct: 106 -------GNHSPRLKFPVTTIVRGDSLVPEISAASILAKTARDAEM 144
>gi|297618794|ref|YP_003706899.1| ribonuclease HII [Methanococcus voltae A3]
gi|297377771|gb|ADI35926.1| ribonuclease HII [Methanococcus voltae A3]
Length = 264
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 87/172 (50%), Gaps = 23/172 (13%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATL---NFADSKTLKEEKREELFEDLK 70
P ++G+DEAGRGPV+GPMV + ++ T + DSK L ++KRE L+++++
Sbjct: 17 PKVVGLDEAGRGPVIGPMVIAGVLLKMDNKENAKTFYDLDLKDSKKLSKKKRETLYKEIQ 76
Query: 71 VNDSVGWAVDIIDPRELSAKM--LNKNKINLNEIS------HDSAIGLITRVLNIGILLT 122
V II +E+ A+M +N NKI LN S + GL + G L
Sbjct: 77 KLAKVEKV--IITAKEIDAQMNIINLNKIELNGFSSIINKFYKDIYGLDENKRDSGFL-- 132
Query: 123 EVYLDTVGDAE-----KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
Y+D E + +AKL + +I + KAD Y +VS ASI+AK
Sbjct: 133 -TYIDACSSNETSFSNQLKAKLINK--NIDLIAEHKADDNYKIVSAASIIAK 181
>gi|384938155|ref|ZP_10029847.1| ribonuclease [Mycoplasma canis UF31]
gi|384393116|gb|EIE39567.1| ribonuclease [Mycoplasma canis UF31]
Length = 200
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G DEAGRGPV GP+V C+ P Y + DSK L E+KRE LFE++K N ++
Sbjct: 14 VAGCDEAGRGPVCGPLVAACVILPLDYVNEM----IDDSKKLSEKKREILFEEIKQN-AI 68
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ ++I E IN +S IG+ + + I V D
Sbjct: 69 DYYIEIRSVDE----------INRTNPKKESQIGMANAIKKLKIKPEYVLTDF------- 111
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
K+ P + K D L ++ ASI+AK
Sbjct: 112 -EKIDIEIPQTNLI---KGDQLSLNIAAASILAK 141
>gi|389852952|ref|YP_006355186.1| ribonuclease HII [Pyrococcus sp. ST04]
gi|388250258|gb|AFK23111.1| Ribonuclease HII [Pyrococcus sp. ST04]
Length = 222
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 13/157 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGP +GP+V + S +L + DSK L E+R +F ++ V+
Sbjct: 3 VGGIDEAGRGPAIGPLVIVAVVVDESKLSSLKNIGVKDSKQLTPEQRRRMFSEI-VSLLE 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD--AE 133
+ V + P E+ + N++ + + + LN + EV D AE
Sbjct: 62 DYVVIKVPPSEIDNRSGTMNELEVEKFAE---------ALNSLKVKPEVIYADAADVKAE 112
Query: 134 KYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAK 169
++ ++ R + + KAD+ Y VVS ASI+AK
Sbjct: 113 RFAREIGARLSYNASIIAEHKADAKYEVVSAASILAK 149
>gi|363897285|ref|ZP_09323824.1| ribonuclease HII [Oribacterium sp. ACB7]
gi|361958782|gb|EHL12079.1| ribonuclease HII [Oribacterium sp. ACB7]
Length = 214
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+V C P Y LN DSK + E++RE LFE+L+ +++
Sbjct: 29 IAGVDEAGRGPLAGPVVAACAVIPLDY--PFYYLN--DSKKMSEKRREALFEELQ-KEAI 83
Query: 76 GWAVDIIDPREL 87
+ + I+ P +
Sbjct: 84 AFGIGIVSPERI 95
>gi|225180946|ref|ZP_03734394.1| Ribonuclease H [Dethiobacter alkaliphilus AHT 1]
gi|225168427|gb|EEG77230.1| Ribonuclease H [Dethiobacter alkaliphilus AHT 1]
Length = 260
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 5/66 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+V G + P ++ LA LN DSK L +KREEL+E + +++V
Sbjct: 78 IAGVDEAGRGPLAGPVVAGAVILPDNF--FLAGLN--DSKKLTPQKREELYEAI-TSEAV 132
Query: 76 GWAVDI 81
W+V I
Sbjct: 133 AWSVGI 138
>gi|429216288|ref|YP_007174278.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Caldisphaera
lagunensis DSM 15908]
gi|429132817|gb|AFZ69829.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Caldisphaera
lagunensis DSM 15908]
Length = 228
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 19/174 (10%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
KW I+GIDEAGRG ++G ++ G + L + DSK L +RE L+E
Sbjct: 6 KW-----IIGIDEAGRGSIIGELMVGSYAIRENDIDFLKEIGVKDSKMLTPNQRENLYEI 60
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAI----GLITRVLNIGILLTEV 124
L + + ++V I P ++ ++ N+N + +AI L ++ NI + +
Sbjct: 61 L-IRKGL-FSVIPIKPYDI-------DRNNINTLEEKAAIQNILNLKRQIGNI-FEIKSI 110
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMDI 178
+D G + +KL Q +V KAD YPVVS ASI+AK R++I
Sbjct: 111 IIDKFGYLKLMPSKLKQLGFKGDLIVEPKADVNYPVVSAASIIAKVIRDRRIEI 164
>gi|383787360|ref|YP_005471929.1| ribonuclease HII [Fervidobacterium pennivorans DSM 9078]
gi|383110207|gb|AFG35810.1| ribonuclease HII [Fervidobacterium pennivorans DSM 9078]
Length = 251
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 25/155 (16%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+G+DEAGRGP+ GP+V +Y + + + ADSK L E++REEL+ ++
Sbjct: 24 SIIGVDEAGRGPLFGPVVAAAVY----FDEGVYVEGIADSKALSEKQREELYNEIFARAK 79
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
G + P E+ N + E++ + A+ ++++ + I V++D
Sbjct: 80 FGLG--LATPEEIDL----YNIFHATELAMNRALKILSQFVEI----KNVFVDG------ 123
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
L FP++ V K DS +S ASI+AK
Sbjct: 124 --KNLKLEFPAVCVV---KGDSKIYQISAASILAK 153
>gi|154250014|ref|YP_001410839.1| ribonuclease HII [Fervidobacterium nodosum Rt17-B1]
gi|154153950|gb|ABS61182.1| Ribonuclease H [Fervidobacterium nodosum Rt17-B1]
Length = 245
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 22/155 (14%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+G+DEAGRGP+ GP+V ++ + + + DSK L E KREEL+E K++ S
Sbjct: 10 SIIGVDEAGRGPIFGPVVAAAVF----FDEGIYIEGITDSKKLSESKREELYE--KISFS 63
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ + I P E+ N ++ E++ + A+ +++ + I +Y+D
Sbjct: 64 AKFGIGIATPDEIDV----YNILHATELAMNRALEILSYYIKID-EGKNIYVD------- 111
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
L FPS K +V K D +S ASI+AK
Sbjct: 112 -GKDLRLNFPS-KCIV--KGDEKVYQISAASILAK 142
>gi|20807898|ref|NP_623069.1| ribonuclease HII [Thermoanaerobacter tengcongensis MB4]
gi|39932431|sp|Q8R9X9.1|RNH2_THETN RecName: Full=Ribonuclease HII; Short=RNase HII
gi|20516465|gb|AAM24673.1| Ribonuclease HII [Thermoanaerobacter tengcongensis MB4]
Length = 241
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP++GP+V C+ P + + DSK L EEKRE+L E +K +++
Sbjct: 59 IAGVDEAGRGPLVGPVVAACVILP----KEIFIPEINDSKKLPEEKREKLAEVIK-KEAI 113
Query: 76 GWAVDIIDPREL 87
+ + I+D RE+
Sbjct: 114 SYGIGIVDCREI 125
>gi|448610387|ref|ZP_21661133.1| ribonuclease HII [Haloferax mucosum ATCC BAA-1512]
gi|445745011|gb|ELZ96481.1| ribonuclease HII [Haloferax mucosum ATCC BAA-1512]
Length = 215
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAG+GPVLGPMV + + +TL ADSK L +REEL E L+ D V
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVR---AESETLPD-GIADSKRLSAARREELNETLRERDDVA 58
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR---VLNIGILLTEVYLDTVGDAE 133
V ++P + + N++ + +A V + G + + V D
Sbjct: 59 VGVAFVEPATIDDPETDMNRLTVRAQVEAAAAVAADDDQLVCDAGDVSESRFGRRVRDG- 117
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
L++ S+ +AD + +V ASIVAK
Sbjct: 118 -----LAETGLSVDVHAQHRADDEHAIVGAASIVAK 148
>gi|254479478|ref|ZP_05092803.1| ribonuclease HII [Carboxydibrachium pacificum DSM 12653]
gi|214034582|gb|EEB75331.1| ribonuclease HII [Carboxydibrachium pacificum DSM 12653]
Length = 236
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP++GP+V C+ P + + DSK L EEKRE+L E +K +++
Sbjct: 54 IAGVDEAGRGPLVGPVVAACVILP----KEIFIPEINDSKKLPEEKREKLAEVIK-KEAI 108
Query: 76 GWAVDIIDPREL 87
+ + I+D RE+
Sbjct: 109 SYGIGIVDCREI 120
>gi|15679041|ref|NP_276158.1| ribonuclease HII [Methanothermobacter thermautotrophicus str. Delta
H]
gi|7227913|sp|O27102.1|RNH2_METTH RecName: Full=Ribonuclease HII; Short=RNase HII
gi|2622126|gb|AAB85519.1| ribonuclease HII [Methanothermobacter thermautotrophicus str. Delta
H]
Length = 206
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++GIDEAGRGPV+GP+V + P L + DSK L E+R L ++ V
Sbjct: 3 VLGIDEAGRGPVIGPLVVAGVMIPERKFSILRKMGVKDSKKLTPERRRFLARKIRRIARV 62
Query: 76 GWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ V I SA +++ + NLNEI + +I +++ V +
Sbjct: 63 -FTVKI------SASDIDRMRERGFNLNEIEKIAIKRIIPEAQPDRVIIDSVDV----KP 111
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E+ + ++ F I+ AD+ Y V+ ASI+AK
Sbjct: 112 ERLEEEIRSHFGEIEVTAEHGADTRYYPVAAASIIAK 148
>gi|118475400|ref|YP_891226.1| ribonuclease HII [Campylobacter fetus subsp. fetus 82-40]
gi|424819944|ref|ZP_18244982.1| Ribonuclease HII [Campylobacter fetus subsp. venerealis NCTC 10354]
gi|118414626|gb|ABK83046.1| ribonuclease HII [Campylobacter fetus subsp. fetus 82-40]
gi|342326723|gb|EGU23207.1| Ribonuclease HII [Campylobacter fetus subsp. venerealis NCTC 10354]
Length = 189
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 80/168 (47%), Gaps = 39/168 (23%)
Query: 16 IMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVND 73
I GIDEAGRG + G +V GC++ P +++ + L +DSK L E+KREE+F +L K++D
Sbjct: 4 ICGIDEAGRGALAGELVVAGCVFKP-KFKKEIIKLGLSDSKKLTEQKREEIFLNLEKMSD 62
Query: 74 S--VGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
V + I+D LS + LN K++ NE +
Sbjct: 63 YLVVYFRNTIVDKIGLSDCLRRALNVIKMHFNECNFI----------------------- 99
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
Y +IK +V KADS P VS ASI+AK S +M
Sbjct: 100 ------YDGNCDYGVKNIKTIV--KADSSVPQVSAASIIAKVSRDRQM 139
>gi|222480377|ref|YP_002566614.1| ribonuclease HII [Halorubrum lacusprofundi ATCC 49239]
gi|222453279|gb|ACM57544.1| ribonuclease HII [Halorubrum lacusprofundi ATCC 49239]
Length = 234
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 29/179 (16%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAG+GPVLGPMV + + DSK + +RE + +++ D+V
Sbjct: 3 LGVDEAGKGPVLGPMVAAAVLA----DPVALPADVDDSKRIAPSRRESIDAEIRATDAVA 58
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN--IGILLTEVYLDTVGDA-E 133
V ++P E +++ ++N ++ + L+ + + L E + V DA +
Sbjct: 59 VGVAFVEPAE-----IDRPDTDMNTLTVRGQARAVRAALHGVVAVDLDE-PIRVVADAGD 112
Query: 134 KYQAKLSQRF----------------PSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
+A+ ++R P + + AD P+V AS+VAK + ERM
Sbjct: 113 TSEARFARRLGESVADPDSDTTDTEHPEVDVSAAHGADEDDPMVGAASVVAKVARDERM 171
>gi|392394719|ref|YP_006431321.1| ribonuclease HII [Desulfitobacterium dehalogenans ATCC 51507]
gi|390525797|gb|AFM01528.1| ribonuclease HII [Desulfitobacterium dehalogenans ATCC 51507]
Length = 260
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 6/79 (7%)
Query: 10 WASNPC-IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
W+S I GIDEAGRGP+ GP+V P + L LN DSK L E +RE+LF+
Sbjct: 68 WSSGYLHIAGIDEAGRGPLAGPVVAATCILPAKF--NLPGLN--DSKKLTESRREKLFQQ 123
Query: 69 LKVNDSVGWAVDIIDPREL 87
+K ++G+AV +P E+
Sbjct: 124 IK-EQAIGYAVGSAEPAEI 141
>gi|297527144|ref|YP_003669168.1| ribonuclease HII [Staphylothermus hellenicus DSM 12710]
gi|297256060|gb|ADI32269.1| ribonuclease HII [Staphylothermus hellenicus DSM 12710]
Length = 244
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 16/159 (10%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED-LKVNDSV 75
+G+DEAGRGP++G +V L + + L ++ DSK L R L + LK+ DS
Sbjct: 10 IGVDEAGRGPLIGDLVIAILIISRNKIEKLISIGVKDSKQLTRHTRLSLAKKILKLADSA 69
Query: 76 GWAVDIIDPRELSAKMLNK---NKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ I P + + +N+ KI L A+ L + V+N +Y+D +
Sbjct: 70 --LIIYISPEIIDSYNINRIIAEKIIL-------ALKLFSPVIN-HYRTASIYIDEIKGY 119
Query: 133 EKY-QAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAK 169
+ Y A LS+ +I ++V+ AD YPVVS ASI+AK
Sbjct: 120 KNYILANLSKYINNIEEYVMEPNADQKYPVVSAASILAK 158
>gi|219669769|ref|YP_002460204.1| ribonuclease HII [Desulfitobacterium hafniense DCB-2]
gi|254807972|sp|B8FRK8.1|RNH2_DESHD RecName: Full=Ribonuclease HII; Short=RNase HII
gi|219540029|gb|ACL21768.1| Ribonuclease H [Desulfitobacterium hafniense DCB-2]
Length = 260
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+V P + L LN DSK L E KRE+LF+ +K ++
Sbjct: 75 IAGIDEAGRGPLAGPVVAATCILPAKF--NLPGLN--DSKKLTESKREKLFQQIK-EQAI 129
Query: 76 GWAVDIIDPREL 87
G+AV +P E+
Sbjct: 130 GYAVGSAEPAEI 141
>gi|89895335|ref|YP_518822.1| ribonuclease HII [Desulfitobacterium hafniense Y51]
gi|122482323|sp|Q24UB4.1|RNH2_DESHY RecName: Full=Ribonuclease HII; Short=RNase HII
gi|89334783|dbj|BAE84378.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 260
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+V P + L LN DSK L E KRE+LF+ +K ++
Sbjct: 75 IAGIDEAGRGPLAGPVVAATCILPAKF--NLPGLN--DSKKLTESKREKLFQQIK-EQAI 129
Query: 76 GWAVDIIDPREL 87
G+AV +P E+
Sbjct: 130 GYAVGSAEPAEI 141
>gi|355571207|ref|ZP_09042459.1| ribonuclease HII [Methanolinea tarda NOBI-1]
gi|354825595|gb|EHF09817.1| ribonuclease HII [Methanolinea tarda NOBI-1]
Length = 211
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 18/157 (11%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAG+G VLGP+V + C ++ LA L DSK L ++RE L +++ + V
Sbjct: 2 LCGVDEAGKGAVLGPLVVAAVG--CGKKEDLADLGVRDSKELSPQRREALAGEIRRSFPV 59
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
AV + P E+ + + N L SH + I ++ + + +D +A +
Sbjct: 60 --AVLSLSPAEIDGRGIGLN--TLIARSHAAVISMLAPSVAV--------VDACDVNASR 107
Query: 135 YQAKLSQRFPSI--KFVVSKKADSLYPVVSGASIVAK 169
Y ++ F S+ + V AD +P VS ASIVAK
Sbjct: 108 YGGMVTG-FLSVPCRVVSCHHADRQHPAVSAASIVAK 143
>gi|304315158|ref|YP_003850305.1| ribonuclease HII [Methanothermobacter marburgensis str. Marburg]
gi|302588617|gb|ADL58992.1| ribonuclease HII [Methanothermobacter marburgensis str. Marburg]
Length = 207
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++GIDEAGRGPV+GP+V + P L + DSK L E+R+ L ++ V
Sbjct: 3 VLGIDEAGRGPVIGPLVVAGVMVPERKFSILRKMGIRDSKKLTPERRKFLARKIRRISRV 62
Query: 76 GWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ V I SA +++ + NLNEI + +I +++ V +
Sbjct: 63 -FTVKI------SASDIDRMREKGFNLNEIEKIAIKRIIAEAQPDSVIIDSVDV----KP 111
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E+ ++ F I+ AD+ Y V+ ASI+AK
Sbjct: 112 ERLTEEIRSHFGDIEVKAEHGADAKYYPVAAASIIAK 148
>gi|423074824|ref|ZP_17063548.1| ribonuclease HII [Desulfitobacterium hafniense DP7]
gi|361854214|gb|EHL06302.1| ribonuclease HII [Desulfitobacterium hafniense DP7]
Length = 254
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+V P + L LN DSK L E KRE+LF+ +K ++
Sbjct: 69 IAGIDEAGRGPLAGPVVAATCILPAKF--NLPGLN--DSKKLTESKREKLFQQIK-EQAI 123
Query: 76 GWAVDIIDPREL 87
G+AV +P E+
Sbjct: 124 GYAVGSAEPAEI 135
>gi|149183639|ref|ZP_01862056.1| ribonuclease HII [Bacillus sp. SG-1]
gi|148848656|gb|EDL62889.1| ribonuclease HII [Bacillus sp. SG-1]
Length = 258
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 76/155 (49%), Gaps = 26/155 (16%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I GIDE GRGP+ GP+V + P + L DSK L E++RE ++ + ++
Sbjct: 74 LIAGIDEVGRGPLAGPVVAAAVILPADF----CLLGINDSKKLSEKQREAFYQYI-TEEA 128
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W+ II P+E+ +++N+ + S + ++T + + + + +D +
Sbjct: 129 IAWSTGIISPQEI-------DELNIYQASKKA---MVTALNTLNVKPDHLLIDAM----- 173
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+L +P + + K D+ ++ ASIVAK
Sbjct: 174 ---ELGSPYPEMSLI---KGDARSISIAAASIVAK 202
>gi|374857159|dbj|BAL60012.1| ribonuclease HII [uncultured candidate division OP1 bacterium]
Length = 207
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 19/162 (11%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRG V+GP+ + L+ L DSK L KR L + ++
Sbjct: 3 ILGIDEAGRGCVIGPLCVAGVVISAEDLDRLSALGVRDSKKLSRHKRALLAQQIEQLAHR 62
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT-VGDA-- 132
V+ I P EL NL EI A+G I R VYLD VG
Sbjct: 63 VIVVE-IGPSELDE--------NLTEIEL-QAMGQIIRESQT----DRVYLDLPVGPQAR 108
Query: 133 EKYQAKLSQRFPSIKF--VVSKKADSLYPVVSGASIVAKRSN 172
E++ L + + F V +AD+ YP+VS ASI+AK S
Sbjct: 109 ERFVHALREHAGTHSFALVAENRADATYPIVSAASIIAKVSR 150
>gi|371777738|ref|ZP_09484060.1| ribonuclease HII [Anaerophaga sp. HS1]
Length = 211
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 26/160 (16%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
++ P + G DEAGRG + GP+V + P + L LN DSK L E++R +L E ++
Sbjct: 18 STGPTVAGCDEAGRGCLAGPVVAAAVILPEDFNHPL--LN--DSKQLTEKRRNQLREIIE 73
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL-LTEVYLDTV 129
+++ WAV ++D RE+ +KIN+ S + +++ I L + +
Sbjct: 74 -KEAIAWAVAMVDNREI-------DKINILNAS--------IKAMHLAIAQLNPAPISLL 117
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
D ++ + ++K K D+ Y ++ AS++AK
Sbjct: 118 VDGNRFHP-----YKNLKHQCIVKGDATYQCIAAASVLAK 152
>gi|397780747|ref|YP_006545220.1| ribonuclease HII [Methanoculleus bourgensis MS2]
gi|396939249|emb|CCJ36504.1| ribonuclease HII [Methanoculleus bourgensis MS2]
Length = 216
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 26/162 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAG+G VLGPMV + C LA L DSK L+ ++RE ++E L +
Sbjct: 9 ICGVDEAGKGSVLGPMVVAAV--GCREAGDLAPLPIRDSKALRPKQREAIYEILLRD--- 63
Query: 76 GWAVDIIDPRELSAKMLN--KNKINLNEIS---HDSAIGLITRVLNIGILLTEVYLDTVG 130
+A+ I+ + A ++ ++++++NE H A+ +G+ Y+D
Sbjct: 64 -FAISIV---TIDAAGIDEARSRMSMNECVAELHAEAL--------MGLRPESAYVDACD 111
Query: 131 -DAEKYQAKLSQ--RFPSIKFVVSKKADSLYPVVSGASIVAK 169
+AE+Y ++ FP + +AD+ Y +V AS+VAK
Sbjct: 112 VNAERYGRTVTDYLDFPC-DIISEHRADARYKIVGAASVVAK 152
>gi|408381629|ref|ZP_11179177.1| ribonuclease HII [Methanobacterium formicicum DSM 3637]
gi|407815560|gb|EKF86130.1| ribonuclease HII [Methanobacterium formicicum DSM 3637]
Length = 206
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 75/162 (46%), Gaps = 24/162 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKR-------EELFED 68
I+GIDEAGRG VLGP+V + + L L DSK + ++R E + E
Sbjct: 3 ILGIDEAGRGSVLGPLVVCGVAVEEDRVKYLERLGLKDSKKISPKRRLSLSRKIERIAEC 62
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
VN + A+DI L +NLNEI AI I N + ++D+
Sbjct: 63 HTVNIT---ALDI--------DTLRSRDVNLNEIEK-IAINQIIGNSN----PSTCFIDS 106
Query: 129 VG-DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+ E+ ++L + V KAD YP+VS ASIVAK
Sbjct: 107 MDVKPERLASELESMHSQLNVVSEHKADDHYPIVSAASIVAK 148
>gi|299067473|emb|CBJ38672.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum CMR15]
Length = 236
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 72/155 (46%), Gaps = 28/155 (18%)
Query: 18 GIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
G+DEAGRGP+ GP+ G + P Q L ADSK L +KRE L++++ V ++
Sbjct: 31 GVDEAGRGPLAGPVTAGAVVLNPRKPIQGL-----ADSKVLTAKKREALYDEI-VEKALA 84
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
W V A + ++IN+ + + + V G+L V +D
Sbjct: 85 WHV-------AEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVD--------- 128
Query: 137 AKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAK 169
R P + F V K D+L P +S ASI+AK
Sbjct: 129 ---GNRCPQVAFAVEAIVKGDALVPAISAASILAK 160
>gi|164655638|ref|XP_001728948.1| hypothetical protein MGL_3942 [Malassezia globosa CBS 7966]
gi|159102836|gb|EDP41734.1| hypothetical protein MGL_3942 [Malassezia globosa CBS 7966]
Length = 86
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 29/38 (76%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFA 52
C +G+DEAGRGPVLGP+VYG YCP Q+ L ++ FA
Sbjct: 40 CALGVDEAGRGPVLGPLVYGIAYCPMDMQEHLRSMGFA 77
>gi|298674468|ref|YP_003726218.1| ribonuclease HII [Methanohalobium evestigatum Z-7303]
gi|298287456|gb|ADI73422.1| ribonuclease HII [Methanohalobium evestigatum Z-7303]
Length = 218
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 22/165 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAG+GPV+G M + + +L L DSK + KREEL +K
Sbjct: 3 VAGIDEAGKGPVIGSMCIAGVVVDEAKINSLKNLGVTDSKKISPRKREELAHKIKK---- 58
Query: 76 GWAVDIIDPRELSAKMLN--KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DA 132
VD E++ ++ +N +++N+I +G V N+ L VY+D+
Sbjct: 59 --YVDNYFIFEITPSQIDELRNVMSMNDI---MVLGFSRVVENLNPEL--VYVDSADVKP 111
Query: 133 EKYQAKLSQRFP--------SIKFVVSKKADSLYPVVSGASIVAK 169
E++ K+ + +IK + +AD +Y VVS ASI+AK
Sbjct: 112 ERFAEKIRSEYSKSNKTASENIKIISEHEADVVYSVVSAASIIAK 156
>gi|124486303|ref|YP_001030919.1| ribonuclease HII [Methanocorpusculum labreanum Z]
gi|189043623|sp|A2STJ6.1|RNH2_METLZ RecName: Full=Ribonuclease HII; Short=RNase HII
gi|124363844|gb|ABN07652.1| RNase HII [Methanocorpusculum labreanum Z]
Length = 212
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 74/158 (46%), Gaps = 20/158 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAG+GPVLGPM+ + S L L DSK L +KRE LFE++ +
Sbjct: 3 ICGVDEAGKGPVLGPMITAGVL--VSDMSELEMLGIKDSKKLSPKKRESLFEEI----TF 56
Query: 76 GWAVDII--DPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DA 132
W + P ++ ++ N S + R L VYLD +A
Sbjct: 57 SWKTYTVVRTPFDIDSREGTMNAFTA------SCHADVVRALCADF----VYLDACDVNA 106
Query: 133 EKYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAK 169
+++ + + S V S+ KAD+ Y VV ASIVAK
Sbjct: 107 KRFGENVLRLSGSSAHVCSEHKADAKYAVVGAASIVAK 144
>gi|330831767|ref|XP_003291928.1| hypothetical protein DICPUDRAFT_11524 [Dictyostelium purpureum]
gi|325077872|gb|EGC31557.1| hypothetical protein DICPUDRAFT_11524 [Dictyostelium purpureum]
Length = 206
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 9/158 (5%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+ IDEAG+G +LGP+V C+ +Q DSK L KRE L+ +L S+
Sbjct: 3 ISIDEAGKGSLLGPLVVSCVVMDSKTEQLFKEQGVKDSKQLSPLKRESLY-NLISEKSIY 61
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLIT-RVLNIGI-LLTEVYLDTV-GDAE 133
I+ ++ + ++ LNEI + LI +LN+ +V LD++ ++E
Sbjct: 62 HQTIILSNHDIDKR---RSLHTLNEIETNIFYQLIKDSILNLAKNQPVKVILDSIESNSE 118
Query: 134 KYQAKLSQRF--PSIKFVVSKKADSLYPVVSGASIVAK 169
KY F P+ + + KAD Y V ASI+AK
Sbjct: 119 KYSLPFKSYFGSPTCEIICETKADIKYTSVGAASILAK 156
>gi|448465151|ref|ZP_21598718.1| ribonuclease HII [Halorubrum kocurii JCM 14978]
gi|445815126|gb|EMA65061.1| ribonuclease HII [Halorubrum kocurii JCM 14978]
Length = 238
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 23/178 (12%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAG+GPVLGPM + S TL + DSK L +RE + L+ D V
Sbjct: 3 LGVDEAGKGPVLGPMAAAAVLADPS---TLPA-DVDDSKRLTPSRRESIDAALREADRVA 58
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD----TVGDA 132
V ++P E+ + N + + + L R IG LD V DA
Sbjct: 59 VGVAFVEPDEIDRPETDMNTLTVRGQARAVRAALADRAA-IGDRAAAGPLDEPVRVVADA 117
Query: 133 -EKYQAKLSQR-------------FPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
+ +++ ++R P + + AD P+V AS+VAK + +RM
Sbjct: 118 GDTSESRFARRLGEFVADGDADADLPEVDVSAAHGADEDDPLVGAASVVAKVARDQRM 175
>gi|83945341|ref|ZP_00957689.1| ribonuclease HII [Oceanicaulis sp. HTCC2633]
gi|83851175|gb|EAP89032.1| ribonuclease HII [Oceanicaulis alexandrii HTCC2633]
Length = 202
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 24/163 (14%)
Query: 7 LPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF 66
+P+ P I G+DEAGRGP+ GP+V + P ++ A DSK L E++R L
Sbjct: 1 MPETRPTPLIAGVDEAGRGPLAGPVVCAAVILPANFS---ALDQLDDSKKLSEKRRAALS 57
Query: 67 EDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL 126
++ VG V I +P E+ +++N + H + ++ V +G++ E+ +
Sbjct: 58 AIIRAEARVG--VGIAEPVEI-------DRLN---VLHATMAAMVRAVEGLGVIPDEILI 105
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
D + A LS P+ V D + ASI+AK
Sbjct: 106 ----DGNRVPAGLSA--PARAIV---GGDGREACIGAASIIAK 139
>gi|219118288|ref|XP_002179922.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408975|gb|EEC48908.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 189
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 7/69 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTL-KEEKREELFEDLKVNDS 74
++G+DEAGRGP+ GP+V P + ADSKTL +E REEL+E + +D+
Sbjct: 3 VIGVDEAGRGPLAGPVVAAAAVVPID------IVGIADSKTLTRESVREELYEKIVSSDN 56
Query: 75 VGWAVDIID 83
V WAV +ID
Sbjct: 57 VRWAVAVID 65
>gi|291563277|emb|CBL42093.1| Ribonuclease HII [butyrate-producing bacterium SS3/4]
Length = 214
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 12/99 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+ G P + L DSK L E +REELF ++K ++
Sbjct: 34 ICGIDEAGRGPLAGPVAAGAAILP----KDCRILYLNDSKKLSESRREELFLEIK-EKAI 88
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRV 114
W+V I+ P + ++IN+ + ++++ I+++
Sbjct: 89 AWSVGIVGPERI-------DEINILQATYEAMRQAISKL 120
>gi|363899264|ref|ZP_09325774.1| ribonuclease HII [Oribacterium sp. ACB1]
gi|395209269|ref|ZP_10398363.1| ribonuclease HII [Oribacterium sp. ACB8]
gi|361959101|gb|EHL12397.1| ribonuclease HII [Oribacterium sp. ACB1]
gi|394704900|gb|EJF12429.1| ribonuclease HII [Oribacterium sp. ACB8]
Length = 214
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+V C P Y LN DSK + E++RE LFE L+ +++
Sbjct: 29 IAGVDEAGRGPLAGPVVAACAVIPLDY--PFYYLN--DSKKMSEKRREALFEVLQ-KEAI 83
Query: 76 GWAVDIIDPREL 87
+ + I+ P +
Sbjct: 84 AFGIGIVSPERI 95
>gi|238926779|ref|ZP_04658539.1| ribonuclease HII [Selenomonas flueggei ATCC 43531]
gi|238885311|gb|EEQ48949.1| ribonuclease HII [Selenomonas flueggei ATCC 43531]
Length = 259
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
N + GIDEAGRGP+ GP+ + P Q L DSK L E+ REEL+E + V+
Sbjct: 63 NCIVAGIDEAGRGPLAGPVAVAAVILP----QEYLLLRLNDSKKLSEKVREELYETI-VS 117
Query: 73 DSVGWAVDIID 83
D+V + V++ID
Sbjct: 118 DAVSYHVELID 128
>gi|319937633|ref|ZP_08012037.1| ribonuclease [Coprobacillus sp. 29_1]
gi|319807275|gb|EFW03887.1| ribonuclease [Coprobacillus sp. 29_1]
Length = 210
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 32/157 (20%)
Query: 16 IMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+G+DEAGRGP+ GP+V G ++ Y + + DSK L E+KRE L+ DL + D+
Sbjct: 19 IIGLDEAGRGPMAGPLVVAGVIFEKGYYHEAI-----NDSKQLSEKKRESLY-DLIIRDA 72
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT--VGDA 132
+ + ++IID ++ +++N+ + S G+I + +I I D +GD
Sbjct: 73 LAYQIEIIDVEDV-------DRLNVYQASKK---GMIDAIHHIAIQPDFALSDAMPLGDE 122
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+ A + K DSL + ASI+AK
Sbjct: 123 IAHNAII-------------KGDSLSMSIGAASILAK 146
>gi|313901245|ref|ZP_07834733.1| ribonuclease HII [Clostridium sp. HGF2]
gi|373121386|ref|ZP_09535254.1| hypothetical protein HMPREF0982_00183 [Erysipelotrichaceae
bacterium 21_3]
gi|422327402|ref|ZP_16408429.1| hypothetical protein HMPREF0981_01749 [Erysipelotrichaceae
bacterium 6_1_45]
gi|312954203|gb|EFR35883.1| ribonuclease HII [Clostridium sp. HGF2]
gi|371663242|gb|EHO28432.1| hypothetical protein HMPREF0981_01749 [Erysipelotrichaceae
bacterium 6_1_45]
gi|371665404|gb|EHO30569.1| hypothetical protein HMPREF0982_00183 [Erysipelotrichaceae
bacterium 21_3]
Length = 207
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI+GIDEAGRGP+ GP+V + P Y DSK L ++KR LF ++ V +
Sbjct: 18 CIVGIDEAGRGPIAGPLVVAAVAFPPGYSHP----EIYDSKKLSDKKRRALFHEV-VAQA 72
Query: 75 VGWAVDIIDPR 85
+ + + II+P+
Sbjct: 73 LEYHIRIIEPK 83
>gi|346314322|ref|ZP_08855843.1| ribonuclease HII [Erysipelotrichaceae bacterium 2_2_44A]
gi|345906680|gb|EGX76404.1| ribonuclease HII [Erysipelotrichaceae bacterium 2_2_44A]
Length = 207
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI+GIDEAGRGP+ GP+V + P Y DSK L ++KR LF ++ V +
Sbjct: 18 CIVGIDEAGRGPIAGPLVVAAVAFPPGYSHP----EIYDSKKLSDKKRRALFHEV-VAQA 72
Query: 75 VGWAVDIIDPR 85
+ + + II+P+
Sbjct: 73 LEYHIRIIEPK 83
>gi|159470503|ref|XP_001693396.1| predicted protein [Chlamydomonas reinhardtii]
gi|158282899|gb|EDP08650.1| predicted protein [Chlamydomonas reinhardtii]
Length = 197
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQ---QTLATLNFADSKTLKEEKREELFEDLKVN 72
+ G DEAGRGP+ GP+V P Q A LN DSK + E++RE +FE L +
Sbjct: 1 VGGADEAGRGPLAGPVVAAVCVLPHQSDTSWQMPAGLN--DSKAITEDEREAIFEALTTD 58
Query: 73 DSVGWAVDIID 83
V WAV IID
Sbjct: 59 SRVRWAVSIID 69
>gi|442805505|ref|YP_007373654.1| ribonuclease HII [Clostridium stercorarium subsp. stercorarium DSM
8532]
gi|442741355|gb|AGC69044.1| ribonuclease HII [Clostridium stercorarium subsp. stercorarium DSM
8532]
Length = 256
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+V GC+ P + + DSK L R+ LF D+ + ++V
Sbjct: 76 IGGIDEAGRGPLAGPVVAGCVVLP----ENCFIEHLNDSKKLTPSMRDRLF-DIIIEEAV 130
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ + ++ P E+ ++IN+ + + + ++ + T YL + DA +
Sbjct: 131 DYGIGMVMPEEI-------DEINIYNATKKAMMQAVSNMKK-----TPDYL--IIDAMEL 176
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
++SQ + KK DSL V+ ASI+AK
Sbjct: 177 PLQISQ-------LSLKKGDSLSISVAAASIIAK 203
>gi|309775665|ref|ZP_07670664.1| ribonuclease HII [Erysipelotrichaceae bacterium 3_1_53]
gi|308916571|gb|EFP62312.1| ribonuclease HII [Erysipelotrichaceae bacterium 3_1_53]
Length = 207
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI+GIDEAGRGP+ GP+V + P Y DSK L ++KR LF+D+ ++ +
Sbjct: 18 CIVGIDEAGRGPIAGPLVVAAVAFPPGYFHE----EIYDSKKLSDKKRRALFQDV-IHQA 72
Query: 75 VGWAVDIIDPR---ELSAKMLNKNKINLNEISHDSAIGLITRVL 115
+ + II+P EL+ +N + A G++T +
Sbjct: 73 KEYHIAIIEPAIIDELNIYRATQNAMQTLSEQFSMADGVLTDAM 116
>gi|332799159|ref|YP_004460658.1| Ribonuclease H [Tepidanaerobacter acetatoxydans Re1]
gi|438002277|ref|YP_007272020.1| Ribonuclease HII [Tepidanaerobacter acetatoxydans Re1]
gi|332696894|gb|AEE91351.1| Ribonuclease H [Tepidanaerobacter acetatoxydans Re1]
gi|432179071|emb|CCP26044.1| Ribonuclease HII [Tepidanaerobacter acetatoxydans Re1]
Length = 210
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
+ G+DEAGRGP+ GP+V + + LN DSK + E+KRE+++ED+K +
Sbjct: 27 LVAGVDEAGRGPLAGPVVAAAVILVLDTE----ILNLKDSKKISEKKREKVYEDIK-GKA 81
Query: 75 VGWAVDIID 83
V +A D+ID
Sbjct: 82 VAYAYDVID 90
>gi|294867798|ref|XP_002765242.1| ribonuclease hii, putative [Perkinsus marinus ATCC 50983]
gi|239865237|gb|EEQ97959.1| ribonuclease hii, putative [Perkinsus marinus ATCC 50983]
Length = 630
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTL-KEEKREELFEDLKVNDS 74
++G+DEAGRGP+ GP+V +Y Q T DSKT+ EE R+ ++E L N
Sbjct: 10 VIGVDEAGRGPLCGPVVAAAVYIN---QDTYIPYGICDSKTISNEEYRDMMYEQLTNNKG 66
Query: 75 VGWAVDIID 83
V W+V I+D
Sbjct: 67 VKWSVGIVD 75
>gi|451344262|ref|ZP_21913322.1| hypothetical protein HMPREF9943_01547 [Eggerthia catenaformis OT
569 = DSM 20559]
gi|449336976|gb|EMD16144.1| hypothetical protein HMPREF9943_01547 [Eggerthia catenaformis OT
569 = DSM 20559]
Length = 211
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 28/156 (17%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+G+DEAGRGP+ GP+ G + P +Y DSK L +KREEL E +K N +
Sbjct: 20 TIIGLDEAGRGPMAGPLTVGGVIFPKNYYDK----RINDSKQLTAKKREELSEIIKAN-A 74
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRV-LNIGILLTEVYLDTVGDAE 133
+ + V++I E+ +K+N+ + S + + +I + ++ LT+
Sbjct: 75 LAYKVEVISVEEV-------DKLNVYQASREGMLRIINTIAIHPDYALTDA--------- 118
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
L+ P + K DSL ++ ASI+AK
Sbjct: 119 ---MPLNNYIPHTSII---KGDSLSLSIAAASILAK 148
>gi|409729992|ref|ZP_11271603.1| ribonuclease HII [Halococcus hamelinensis 100A6]
gi|448722297|ref|ZP_21704835.1| ribonuclease HII [Halococcus hamelinensis 100A6]
gi|445790008|gb|EMA40681.1| ribonuclease HII [Halococcus hamelinensis 100A6]
Length = 212
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 17/165 (10%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
G+DEAGRGPVLG + C+ P DSK L +RE L +DL +D V
Sbjct: 3 FGVDEAGRGPVLGSLFVACVRADPADLPA-----GIDDSKRLSPARREALVDDLHGDDRV 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
AV E++A ++ + ++N ++ +A I V G+ DT DA ++
Sbjct: 58 STAV-----VEVTASEIDDPETDINALTITAAAEAIDDVAEDGLTGIVDACDT--DAARF 110
Query: 136 QAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAK---RSNFERM 176
++ + ++ AD + +V ASIVAK S+ ER+
Sbjct: 111 GRRVVVATETDVEVTAEHGADENHDLVGAASIVAKVARDSHIERL 155
>gi|449691976|ref|XP_004212862.1| PREDICTED: ribonuclease H2 subunit A-like, partial [Hydra
magnipapillata]
Length = 127
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 35/46 (76%)
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+Y+DTVGDA KYQ KLS+ F + V+ KAD+L+P+VS ASI AK
Sbjct: 1 MYVDTVGDASKYQNKLSEVFDGVSVKVTPKADALFPIVSAASICAK 46
>gi|335436880|ref|ZP_08559669.1| ribonuclease HII [Halorhabdus tiamatea SARL4B]
gi|334897145|gb|EGM35282.1| ribonuclease HII [Halorhabdus tiamatea SARL4B]
Length = 256
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 21/174 (12%)
Query: 2 GSEAALPKWASNPCIM--GIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLK 58
G L W + + G+DEAG+GPVLG M C+ P + DSK L
Sbjct: 30 GERTRLDDWTDDGGGLRAGVDEAGKGPVLGSMFAACIVADPADLPD-----DVDDSKDLA 84
Query: 59 EEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIG 118
E+REEL + + D D + E+ ++ + ++N ++ + + V + G
Sbjct: 85 PERREELA--VVIRDR----ADAVAVSEIPVARIDDPETDMNTLTVAAHAEALEPVASDG 138
Query: 119 ILLTEVYLDTVGD--AEKYQAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAK 169
+ YLD GD A +++ +++ R + + AD+ YP+V ASIVAK
Sbjct: 139 LA---TYLD-AGDTNAVRFERRVADRVEADLDLRAEHGADAAYPIVGAASIVAK 188
>gi|448593311|ref|ZP_21652309.1| ribonuclease HII [Haloferax elongans ATCC BAA-1513]
gi|445730219|gb|ELZ81809.1| ribonuclease HII [Haloferax elongans ATCC BAA-1513]
Length = 215
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 13/164 (7%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAG+GPVLGPMV + + +TL ADSK L E+REEL +L+ D +
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVR---ADPETLPE-GIADSKRLTPERREELAAELRERDDIS 58
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR---VLNIGILLTEVYLDTVGDAE 133
V ++P + + N + + +A V + G + + V D
Sbjct: 59 VGVAFVEPETIDDPETDMNLLTVRAQVEAAAEVAADADELVCDAGDVSESRFGRRVRDG- 117
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
+++ S++ +AD + +V ASIVAK R++
Sbjct: 118 -----VAEAGASVEVHAQHRADDEHAIVGAASIVAKVERDRRVE 156
>gi|187778966|ref|ZP_02995439.1| hypothetical protein CLOSPO_02561 [Clostridium sporogenes ATCC
15579]
gi|187772591|gb|EDU36393.1| ribonuclease HII [Clostridium sporogenes ATCC 15579]
Length = 269
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
++ ++ I G+DE GRGP+ GP+V + + ++ LN DSK L E+KREEL D
Sbjct: 78 RYGNSYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMHRILNIKDSKKLSEKKREEL--D 135
Query: 69 LKVND-SVGWAVDIIDPRELSAK 90
+ + + ++ + + ++D R + +
Sbjct: 136 IIIREKAISYNIALVDNRTIDER 158
>gi|386333599|ref|YP_006029769.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum Po82]
gi|334196048|gb|AEG69233.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum Po82]
Length = 236
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 26/154 (16%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGP+ GP+ G + ADSK L +KRE L++++ V ++ W
Sbjct: 31 GVDEAGRGPLAGPVTAGAVV----LNPRKPIKGLADSKVLTAKKREALYDEI-VEKALAW 85
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
V A + ++IN+ + + + V G+L V +D
Sbjct: 86 HV-------AEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVD---------- 128
Query: 138 KLSQRFPSIKFVVSK--KADSLYPVVSGASIVAK 169
R P + F V K D+L P +S ASI+AK
Sbjct: 129 --GNRCPQVAFAVEAIVKGDALVPAISAASILAK 160
>gi|83749784|ref|ZP_00946758.1| Ribonuclease HII [Ralstonia solanacearum UW551]
gi|207743230|ref|YP_002259622.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum
IPO1609]
gi|83723541|gb|EAP70745.1| Ribonuclease HII [Ralstonia solanacearum UW551]
gi|206594627|emb|CAQ61554.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum
IPO1609]
Length = 236
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 26/154 (16%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGP+ GP+ G + ADSK L +KRE L++++ V ++ W
Sbjct: 31 GVDEAGRGPLAGPVTAGAVV----LNPRKPIKGLADSKVLTAKKREALYDEI-VEKALAW 85
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
V A + ++IN+ + + + V G+L V +D
Sbjct: 86 HV-------AEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVD---------- 128
Query: 138 KLSQRFPSIKFVVSK--KADSLYPVVSGASIVAK 169
R P + F V K D+L P +S ASI+AK
Sbjct: 129 --GNRCPQVAFAVEAIVKGDALVPAISAASILAK 160
>gi|291550686|emb|CBL26948.1| Ribonuclease HII [Ruminococcus torques L2-14]
Length = 252
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 64/116 (55%), Gaps = 13/116 (11%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K+A I GIDEAGRGP+ GP+V G + P + L DSK L KREEL+++
Sbjct: 65 KYADYSFICGIDEAGRGPLAGPVVAGAVILP----KDCEILYLNDSKKLSAAKREELYDE 120
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRV-LNIGILLTE 123
+ + +V AV + P + ++IN+ + ++++ I+++ + GILL +
Sbjct: 121 I-MEKAVAAAVGMASPARI-------DEINILQATYEAMREAISKLAVEPGILLND 168
>gi|302348278|ref|YP_003815916.1| ribonuclease HII [Acidilobus saccharovorans 345-15]
gi|302328690|gb|ADL18885.1| Ribonuclease HII [Acidilobus saccharovorans 345-15]
Length = 223
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVNDS 74
I+G+DEAGRG ++G ++ C L + DSK L RE L+ + ++ +
Sbjct: 4 IIGVDEAGRGSLVGELMLACFATKEENLGLLKDMGVRDSKQLTPHSRETLYRSIVRLGEF 63
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIG----LITRVLNIGILLTEVYLDTVG 130
V V I P E+ ++ N+N + +A+ L++R+ L+ +Y+D G
Sbjct: 64 V---VVPIPPAEI-------DRENVNVLEERAALKGLKVLLSRLRP--ELVKAIYIDKFG 111
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMDI 178
+ +L + + VV KAD+ Y VVS ASI+AK R+++
Sbjct: 112 ELRILPGELKRLGFRGRLVVEPKADANYVVVSAASIIAKVIRDRRIEV 159
>gi|421897361|ref|ZP_16327729.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum MolK2]
gi|206588567|emb|CAQ35530.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum MolK2]
Length = 236
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 26/154 (16%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGP+ GP+ G + ADSK L +KRE L++++ V ++ W
Sbjct: 31 GVDEAGRGPLAGPVTAGAVV----LNPRKPIKGLADSKVLTAKKREALYDEI-VEKALAW 85
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
V A + ++IN+ + + + V G+L V +D
Sbjct: 86 HV-------AEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVD---------- 128
Query: 138 KLSQRFPSIKFVVSK--KADSLYPVVSGASIVAK 169
R P + F V K D+L P +S ASI+AK
Sbjct: 129 --GNRCPQVAFAVEAIVKGDALVPAISAASILAK 160
>gi|436834241|ref|YP_007319457.1| Ribonuclease H [Fibrella aestuarina BUZ 2]
gi|384065654|emb|CCG98864.1| Ribonuclease H [Fibrella aestuarina BUZ 2]
Length = 191
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 32/164 (19%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DE GRG + GP+V + P YQ + T DSK L +R L D++ D++ W
Sbjct: 14 GLDEVGRGCLAGPVVAAAVILPPDYQHPILT----DSKQLSRPQRNRLQADIR-RDAIAW 68
Query: 78 AVDIIDPRELSAKMLNKNKINLNEIS----HDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
A+ + P ++ ++IN+ + S H + L R ++ + D
Sbjct: 69 AIAEVSPADI-------DRINILQASFLAMHRATDALSVRPEHLLV-----------DGN 110
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
+++ +P + K DSLY ++ AS++AK E M+
Sbjct: 111 RFRP-----YPMVPHTCIVKGDSLYLSIAAASVLAKTYRDELME 149
>gi|421888303|ref|ZP_16319403.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum K60-1]
gi|378966342|emb|CCF96151.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum K60-1]
Length = 236
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 26/154 (16%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGP+ GP+ G + ADSK L +KRE L++++ V ++ W
Sbjct: 31 GVDEAGRGPLAGPVTAGAVV----LNPRKPIKGLADSKVLTAKKREALYDEI-VEKALAW 85
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
V A + ++IN+ + + + V G+L V +D
Sbjct: 86 HV-------AEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVD---------- 128
Query: 138 KLSQRFPSIKFVVSK--KADSLYPVVSGASIVAK 169
R P + F V K D+L P +S ASI+AK
Sbjct: 129 --GNRCPQVAFAVEAIVKGDALVPAISAASILAK 160
>gi|260584114|ref|ZP_05851862.1| ribonuclease HIII [Granulicatella elegans ATCC 700633]
gi|260158740|gb|EEW93808.1| ribonuclease HIII [Granulicatella elegans ATCC 700633]
Length = 304
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 5/173 (2%)
Query: 6 ALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREEL 65
LP+ SN ++G DE G G GP+ C + P + + L L DSK L + + +E+
Sbjct: 81 GLPEGFSNWGVIGSDEVGTGSYFGPLTVACAFVPENLIKELQILGVKDSKILTDSQIQEI 140
Query: 66 FEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVY 125
K+ + V + + + P + + KN + + H+ AI + + +N LL V
Sbjct: 141 VP--KIKELVPYKLLTLWPEKYNEVQQTKNLNEMKALLHNQAIKRLYQQINAD-LLQAVL 197
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVV--SKKADSLYPVVSGASIVAKRSNFERM 176
+D Y L + +K + K +S + V+ AS++A+ + E +
Sbjct: 198 IDEFCSPSNYYRYLGDQSAPLKAITYFKTKGESHHIAVAAASMIARDAFLEGL 250
>gi|297544719|ref|YP_003677021.1| Ribonuclease H [Thermoanaerobacter mathranii subsp. mathranii str.
A3]
gi|296842494|gb|ADH61010.1| Ribonuclease H [Thermoanaerobacter mathranii subsp. mathranii str.
A3]
Length = 242
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP++GP+V C+ P + + DSK L EEKRE L E +K ++
Sbjct: 60 IAGIDEAGRGPLVGPVVAACVILP----KNVFIPEINDSKKLSEEKREVLSEVIK-KVAI 114
Query: 76 GWAVDIIDPREL 87
+A+ I+D E+
Sbjct: 115 SYAIGIVDCEEI 126
>gi|217970566|ref|YP_002355800.1| ribonuclease HII [Thauera sp. MZ1T]
gi|217507893|gb|ACK54904.1| Ribonuclease H [Thauera sp. MZ1T]
Length = 203
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 76/171 (44%), Gaps = 29/171 (16%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
M +E P S+ I G+DEAGRGP+ GP+V + ADSK L E
Sbjct: 1 MNAELFDPGLPSSSLICGVDEAGRGPLCGPVVAAAVI----LDPARPIEGLADSKKLSEA 56
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
RE L ++ ++ WAV E S + +++ LN I H + + + V+ +GI
Sbjct: 57 ARERLAPLIRAR-ALAWAVA-----EASVEEIDR----LN-ILHATMLAMQRAVMALGIA 105
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAK 169
EV +D R P + + K D+ P +S ASI+AK
Sbjct: 106 PAEVRID------------GNRCPKLPYPARAIVKGDATEPSISAASILAK 144
>gi|283798046|ref|ZP_06347199.1| ribonuclease HII [Clostridium sp. M62/1]
gi|291074350|gb|EFE11714.1| ribonuclease HII [Clostridium sp. M62/1]
gi|295091815|emb|CBK77922.1| Ribonuclease HII [Clostridium cf. saccharolyticum K10]
Length = 223
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K+AS I GIDEAGRGP+ GP+V P + L DSK L E++REELF +
Sbjct: 25 KYASCGFICGIDEAGRGPLAGPVVAAACILPTDCE----ILYLNDSKKLTEKRREELFVE 80
Query: 69 LKVNDSVGWAVDIIDP 84
++ +V + V I+ P
Sbjct: 81 IQ-EKAVSFGVGIVSP 95
>gi|212223919|ref|YP_002307155.1| ribonuclease HII [Thermococcus onnurineus NA1]
gi|226736826|sp|B6YVT5.1|RNH2_THEON RecName: Full=Ribonuclease HII; Short=RNase HII
gi|212008876|gb|ACJ16258.1| ribonuclease HII [Thermococcus onnurineus NA1]
Length = 227
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 80/162 (49%), Gaps = 23/162 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGPVLGPMV + L L DSK L ++RE LF+++
Sbjct: 3 LAGIDEAGRGPVLGPMVIAAVVVDEGNVPKLEELGVKDSKKLTPKRRERLFDEI------ 56
Query: 76 GWAVDIIDPR---ELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT--VG 130
V ++D EL + ++ + LNE ++ + + ++ + VY+D V
Sbjct: 57 ---VQLLDDYVILELWPEEIDSREGTLNEFEVENFVKALN---SLKVKPDVVYIDAADVK 110
Query: 131 DA---EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+A E+ +AKL F + + KAD + VS ASI+AK
Sbjct: 111 EARFGEEIKAKLD--FEA-DIIAEHKADDKFVPVSAASILAK 149
>gi|429191022|ref|YP_007176700.1| ribonuclease H, mammalian HI/archaeal HII subfamily
[Natronobacterium gregoryi SP2]
gi|448327412|ref|ZP_21516740.1| ribonuclease HII [Natronobacterium gregoryi SP2]
gi|429135240|gb|AFZ72251.1| ribonuclease H, mammalian HI/archaeal HII subfamily
[Natronobacterium gregoryi SP2]
gi|445608510|gb|ELY62349.1| ribonuclease HII [Natronobacterium gregoryi SP2]
Length = 221
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 72/161 (44%), Gaps = 17/161 (10%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
G+DEAG+GPVLG M +Y P + ADSK L E RE+L L+ +D G
Sbjct: 3 FGVDEAGKGPVLGSMFAAAVYVP---EAAALPDGIADSKRLAPEHREKLAATLREDDRFG 59
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
V E+S +++ ++N ++ ++ I L L + +D + DA
Sbjct: 60 IGV-----AEISTGRIDEPTTDMNSLTVEAHANAIEAALEDCALEND-SVDGLCDACDTD 113
Query: 137 A-KLSQRFP-------SIKFVVSKKADSLYPVVSGASIVAK 169
A + ++R + AD PVV ASIVAK
Sbjct: 114 ANRFARRVADAASLSRDLDLEARHGADDDSPVVGAASIVAK 154
>gi|146303444|ref|YP_001190760.1| ribonuclease HII [Metallosphaera sedula DSM 5348]
gi|145701694|gb|ABP94836.1| RNase HII [Metallosphaera sedula DSM 5348]
Length = 208
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 77/156 (49%), Gaps = 18/156 (11%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRG ++GPMV + L DSK L +KREELF DL +++S G
Sbjct: 3 IGIDEAGRGCLIGPMVVVGVALNERSIVALKQSGVKDSKKLTRKKREELF-DLILSESEG 61
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRV--LNIGILLTEVYLDTVG-DAE 133
AV P E+ NLN +++ I +I + LN + V +D VG + E
Sbjct: 62 VAVAKALPEEIDNN-------NLNSLTYTKVIEIIDALSWLNPEV----VTVDKVGKEIE 110
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+A F K V KAD L+ S ASIVAK
Sbjct: 111 VIRAIEDLGF---KPNVVHKADELFVEASSASIVAK 143
>gi|332295819|ref|YP_004437742.1| ribonuclease H [Thermodesulfobium narugense DSM 14796]
gi|332178922|gb|AEE14611.1| Ribonuclease H [Thermodesulfobium narugense DSM 14796]
Length = 210
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 34/158 (21%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND--- 73
+G+DE GRG + GP+V G +Y + + DSK LK+++R EL + +K
Sbjct: 23 LGMDEVGRGALAGPLVVGAVY----FDKDYMIDGLKDSKLLKDQERRELCDIIKRKASYW 78
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR--VLNIGILLTEVYLDTVGD 131
S+GWA +K+N+ SA+ L + +LN+ L ++ D
Sbjct: 79 SIGWAYH-----------WEIDKLNIY-----SALVLACKRAILNMNFLPEAIFFDG--- 119
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL + FP K +V KAD L P V+ ASI+AK
Sbjct: 120 ----SLKL-KTFP-FKHIVFPKADRLVPSVAAASIIAK 151
>gi|375111099|ref|ZP_09757310.1| ribonuclease H [Alishewanella jeotgali KCTC 22429]
gi|374568641|gb|EHR39813.1| ribonuclease H [Alishewanella jeotgali KCTC 22429]
Length = 200
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 29/163 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP++G +V + + L DSK L E+KR+ L E++K ++
Sbjct: 11 IAGVDEVGRGPLIGAVVTAAVILDPAQ----PILGLTDSKKLTEKKRQLLAEEIKAK-AL 65
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
WA+ +P E+ +++N I H + + + V + I V +D
Sbjct: 66 CWALGRAEPAEI-------DQLN---ILHATMLAMQRAVAALAIQPEWVLID-------- 107
Query: 136 QAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKRSNFERM 176
R P++ S K DSL P +S ASI+AK + + M
Sbjct: 108 ----GNRCPALAMPASAVVKGDSLVPEISAASILAKVARDQEM 146
>gi|416046042|ref|ZP_11575580.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype d
str. I63B]
gi|347994875|gb|EGY36112.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype d
str. I63B]
Length = 199
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 30/165 (18%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I G+DE GRGP++G +V + +QT+ L ADSKTL E+KR L E++K +
Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVI--LDPKQTIEGL--ADSKTLSEKKRLLLAEEIK-QKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ WA+ +P E+ LN I H S + + + ++ I V +D
Sbjct: 67 LAWALGRAEPHEID---------ELN-ILHASMLAMERAIKHLKIQPHFVLMD------- 109
Query: 135 YQAKLSQRFPSIKFVVSK---KADSLYPVVSGASIVAKRSNFERM 176
R P + ++ K D+L P +S ASI+AK + + M
Sbjct: 110 -----GNRIPPNLMIPAQAVVKGDALVPEISAASILAKVARDQEM 149
>gi|281205710|gb|EFA79899.1| hypothetical protein PPL_06719 [Polysphondylium pallidum PN500]
Length = 589
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAG+G VLGP+V + + +Q L DSK L ++REEL++ +K ++
Sbjct: 267 IGVDEAGKGAVLGPLVIAAVSLDSAAEQYLKAAGVKDSKKLSAQRREELYDIIK-ERALY 325
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN 116
+ I++ R++ + + LN+I D + LI R LN
Sbjct: 326 TTIYILEARDID---IRRKTQTLNKIESDIFLELIQRSLN 362
>gi|376261101|ref|YP_005147821.1| ribonuclease HII [Clostridium sp. BNL1100]
gi|373945095|gb|AEY66016.1| ribonuclease HII [Clostridium sp. BNL1100]
Length = 255
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 79/154 (51%), Gaps = 25/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+V + P + L DSK L E +RE+LF+++K + ++
Sbjct: 74 IAGVDEAGRGPLAGPVVAAAVVLP----KGLTIEGVNDSKKLSEAQREKLFDEIK-DKAL 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ + +ID + + N +N +++ A+ + + + ILL V LD +
Sbjct: 129 SYGISVIDEKYID----EVNILNATKMAMADALSQLNPIADF-ILLDAVSLDNIS----- 178
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+++ P I K DSL ++ ASI+AK
Sbjct: 179 ----TKQVPII------KGDSLSLSIAAASILAK 202
>gi|300704217|ref|YP_003745820.1| ribonuclease HII [Ralstonia solanacearum CFBP2957]
gi|299071881|emb|CBJ43210.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum CFBP2957]
Length = 236
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 26/160 (16%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
S + G+DEAGRGP+ GP+ G + + ++ + L ADSK L ++RE L++++ V
Sbjct: 25 SRRILCGVDEAGRGPLAGPVTAGAVV--LNPRKPIKGL--ADSKVLTAKRREALYDEI-V 79
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
++ W V A + ++IN+ + + + V G+L V +D
Sbjct: 80 EKALAWHV-------AEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVD---- 128
Query: 132 AEKYQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAK 169
R P + F V K D+L P +S ASI+AK
Sbjct: 129 --------GNRCPQVAFAVEAIVKGDALVPAISAASILAK 160
>gi|448725585|ref|ZP_21708035.1| ribonuclease HII [Halococcus morrhuae DSM 1307]
gi|445798039|gb|EMA48468.1| ribonuclease HII [Halococcus morrhuae DSM 1307]
Length = 209
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 70/155 (45%), Gaps = 14/155 (9%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGPVLG + C+ S T DSK L +RE L +L+ ++ V
Sbjct: 1 MFGVDEAGRGPVLGSLFVACV----SADATALPDGTDDSKRLAPARREALAAELRADERV 56
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
AV + P E+ LN L + AI GI+ DT DAE++
Sbjct: 57 TIAVSEVTPTEIDDGRLN----GLTVAAMADAIDRAVPTGESGIIDA---CDT--DAERF 107
Query: 136 QAKL-SQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
++ ++ ++ AD + V ASIVAK
Sbjct: 108 GRRVRAETATDVELAAEHGADESHEHVGAASIVAK 142
>gi|374724762|gb|EHR76842.1| ribonuclease HII [uncultured marine group II euryarchaeote]
Length = 242
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 12/161 (7%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-DSVG 76
G+DEAGRGPV+GP+V G + P + L DSK L +KR + + G
Sbjct: 5 GVDEAGRGPVIGPLVVGAVAIPTADLPMLKEYGVRDSKDLTHKKRVAMADWFHEQARQRG 64
Query: 77 WAVDII--DPRELSAKMLNKNKINLNEIS-HDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
W +I P + A +++ N +NL E+ A+ + + + G+ + D +A+
Sbjct: 65 WLHQVIVCPPPRIDAAVIH-NGLNLLEVELFAEALNPMRKEVEQGVQILNDACDV--NAQ 121
Query: 134 KYQAKLSQRFPSIKFVVS-----KKADSLYPVVSGASIVAK 169
++ +++ R + S KAD+ + +V ASI+AK
Sbjct: 122 RFTDRIAARLTGWPWNQSSMTSEHKADTNHAIVGMASILAK 162
>gi|304436821|ref|ZP_07396787.1| ribonuclease H [Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304370193|gb|EFM23852.1| ribonuclease H [Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 259
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Query: 15 CIM-GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
CI+ G+DEAGRGP+ GP+ + P Q L DSK L E+ REEL+E + V+D
Sbjct: 64 CIVAGVDEAGRGPLAGPVAVAAVILP----QEYLLLRLDDSKKLSEKVREELYERI-VSD 118
Query: 74 SVGWAVDIID 83
+V + V++ID
Sbjct: 119 AVSYHVELID 128
>gi|153934073|ref|YP_001384616.1| ribonuclease HII [Clostridium botulinum A str. ATCC 19397]
gi|153935357|ref|YP_001388133.1| ribonuclease HII [Clostridium botulinum A str. Hall]
gi|189043578|sp|A7FW05.1|RNH2_CLOB1 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|152930117|gb|ABS35617.1| ribonuclease HII [Clostridium botulinum A str. ATCC 19397]
gi|152931271|gb|ABS36770.1| ribonuclease HII [Clostridium botulinum A str. Hall]
Length = 269
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
++ +N I G+DE GRGP+ GP+V + + ++ N DSK L E+KREEL D
Sbjct: 78 RYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRVFNIKDSKKLSEKKREEL--D 135
Query: 69 LKVND-SVGWAVDIIDPRELSAK 90
+ + + ++ + + ++D + + +
Sbjct: 136 IIIREKAISYNIALVDNKTIDER 158
>gi|145481239|ref|XP_001426642.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393718|emb|CAK59244.1| unnamed protein product [Paramecium tetraurelia]
Length = 281
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 86/173 (49%), Gaps = 13/173 (7%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKRE--ELFE 67
A++ I+GI EAGRGP++GP++ GC + ++ + + + +K + + E E+
Sbjct: 21 ANSEWILGIFEAGRGPLIGPIIIAGCFWPITNHNYIVKQCSLSLNKQFYQNQVESSEIIS 80
Query: 68 DLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD 127
LK ++ + I ++LS K+L ++NEIS + + LI +L+ G + E Y++
Sbjct: 81 KLK-GKALQFETIEISAQKLSTKILAYTPSDVNEISLNYTLQLIKNILSKGYKIIECYIN 139
Query: 128 TVGDAEKYQAKLSQRF----PSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
+G E L + +KF+V ++ + A IV+ + R+
Sbjct: 140 PIGFKENLNEVLKKGLGLGNNDLKFIV-----GMHQTIIAAQIVSLQERNTRL 187
>gi|435853381|ref|YP_007314700.1| ribonuclease HII [Halobacteroides halobius DSM 5150]
gi|433669792|gb|AGB40607.1| ribonuclease HII [Halobacteroides halobius DSM 5150]
Length = 258
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I GIDEAGRGP+ GP+V + P L DSK L E+KREELF D+ N +
Sbjct: 75 LIAGIDEAGRGPLAGPVVAAAVILPTDK----FILGLDDSKKLNEKKREELF-DIIYNQA 129
Query: 75 VGWAVDIID 83
+ V ++D
Sbjct: 130 IDIGVGVVD 138
>gi|289578443|ref|YP_003477070.1| ribonuclease H [Thermoanaerobacter italicus Ab9]
gi|289528156|gb|ADD02508.1| Ribonuclease H [Thermoanaerobacter italicus Ab9]
Length = 242
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP++GP+V C+ P + + DSK L EEKRE L E +K ++
Sbjct: 60 IAGVDEAGRGPLVGPVVAACVILP----KNVFIPEINDSKKLSEEKREVLSEVIK-KVAI 114
Query: 76 GWAVDIIDPREL 87
+A+ I+D E+
Sbjct: 115 SYAIGIVDCEEI 126
>gi|317152482|ref|YP_004120530.1| Ribonuclease H [Desulfovibrio aespoeensis Aspo-2]
gi|316942733|gb|ADU61784.1| Ribonuclease H [Desulfovibrio aespoeensis Aspo-2]
Length = 207
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 20/155 (12%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I G+DEAGRG + GP+V G P +Y L LN DSK L KRE L+ ++ + +
Sbjct: 10 AIAGVDEAGRGCLAGPVVAGACILPQTYD--LPGLN--DSKQLSAAKRETLYPLIR-SQA 64
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
V WAV + P E+ +++N+ + + A+G R L + + + + A
Sbjct: 65 VAWAVGLSWPGEI-------DRVNILQATF-LAMGRAVRALKLSPRFLRIDGNKIIPAHA 116
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+SQ ++V+ D P +S AS++AK
Sbjct: 117 LGLGVSQ-----EWVIG--GDGSVPAISAASVLAK 144
>gi|226949794|ref|YP_002804885.1| ribonuclease HII [Clostridium botulinum A2 str. Kyoto]
gi|387818662|ref|YP_005679009.1| ribonuclease HII [Clostridium botulinum H04402 065]
gi|226842944|gb|ACO85610.1| ribonuclease HII [Clostridium botulinum A2 str. Kyoto]
gi|322806706|emb|CBZ04275.1| ribonuclease HII [Clostridium botulinum H04402 065]
Length = 269
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 8 PKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE 67
++ +N I G+DE GRGP+ GP+V + + ++ N DSK L E+KREEL
Sbjct: 77 KRYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKKREEL-- 134
Query: 68 DLKVND-SVGWAVDIIDPRELSAK 90
D+ + + ++ + + ++D + + +
Sbjct: 135 DIIIREKAISYNIALVDNKTIDER 158
>gi|148380399|ref|YP_001254940.1| ribonuclease HII [Clostridium botulinum A str. ATCC 3502]
gi|168180678|ref|ZP_02615342.1| ribonuclease HII [Clostridium botulinum NCTC 2916]
gi|189043580|sp|A5I4L9.1|RNH2_CLOBH RecName: Full=Ribonuclease HII; Short=RNase HII
gi|148289883|emb|CAL83991.1| putative ribonuclease HII [Clostridium botulinum A str. ATCC 3502]
gi|182668376|gb|EDT80355.1| ribonuclease HII [Clostridium botulinum NCTC 2916]
Length = 269
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
++ +N I G+DE GRGP+ GP+V + + ++ N DSK L E+KREEL D
Sbjct: 78 RYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKKREEL--D 135
Query: 69 LKVND-SVGWAVDIIDPRELSAK 90
+ + + ++ + + ++D + + +
Sbjct: 136 IIIREKAISYNIALVDNKTIDER 158
>gi|168184647|ref|ZP_02619311.1| ribonuclease HII [Clostridium botulinum Bf]
gi|237795877|ref|YP_002863429.1| ribonuclease HII [Clostridium botulinum Ba4 str. 657]
gi|182672292|gb|EDT84253.1| ribonuclease HII [Clostridium botulinum Bf]
gi|229260950|gb|ACQ51983.1| ribonuclease HII [Clostridium botulinum Ba4 str. 657]
Length = 269
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 8 PKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE 67
++ +N I G+DE GRGP+ GP+V + + ++ N DSK L E+KREEL
Sbjct: 77 KRYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKKREEL-- 134
Query: 68 DLKVND-SVGWAVDIIDPRELSAK 90
D+ + + ++ + + ++D + + +
Sbjct: 135 DIIIREKAISYNIALVDNKTIDER 158
>gi|431794548|ref|YP_007221453.1| ribonuclease HII [Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430784774|gb|AGA70057.1| ribonuclease HII [Desulfitobacterium dichloroeliminans LMG P-21439]
Length = 259
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+V P + L LN DSK L E KRE LF+++K ++
Sbjct: 75 IAGMDEAGRGPLAGPVVAAACILPAKF--NLPGLN--DSKKLSESKRERLFQEIK-EQAL 129
Query: 76 GWAVDIIDPRELSA 89
G+AV + E+ A
Sbjct: 130 GYAVGSAESAEIDA 143
>gi|326389492|ref|ZP_08211059.1| Ribonuclease H [Thermoanaerobacter ethanolicus JW 200]
gi|325994497|gb|EGD52922.1| Ribonuclease H [Thermoanaerobacter ethanolicus JW 200]
Length = 242
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP++GP+V C+ P + + DSK L EEKRE L E +K ++
Sbjct: 60 IAGVDEAGRGPLVGPIVAACVILP----KEVFIPEINDSKKLSEEKREVLSEVIK-KVAI 114
Query: 76 GWAVDIIDPREL 87
+A+ I+D E+
Sbjct: 115 SYAIGIVDCEEI 126
>gi|387120665|ref|YP_006286548.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D7S-1]
gi|415757797|ref|ZP_11481463.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D17P-3]
gi|416055566|ref|ZP_11579608.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype e
str. SCC393]
gi|416069383|ref|ZP_11583260.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype f
str. D18P1]
gi|429734061|ref|ZP_19268104.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans Y4]
gi|444334309|ref|ZP_21149901.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype a
str. A160]
gi|348000172|gb|EGY40969.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype f
str. D18P1]
gi|348002850|gb|EGY43514.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype e
str. SCC393]
gi|348655371|gb|EGY70829.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D17P-3]
gi|385875157|gb|AFI86716.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D7S-1]
gi|429153411|gb|EKX96195.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans Y4]
gi|443550570|gb|ELT58806.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype a
str. A160]
Length = 199
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 30/165 (18%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I G+DE GRGP++G +V + +QT+ L ADSKTL E+KR L E++K +
Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVI--LDPKQTIEGL--ADSKTLSEKKRLLLAEEIK-QKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ WA+ +P E+ LN I H S + + + ++ I V +D
Sbjct: 67 LAWALGRAEPHEID---------ELN-ILHASMLAMERAIKHLKIQPHFVLVD------- 109
Query: 135 YQAKLSQRFPSIKFVVSK---KADSLYPVVSGASIVAKRSNFERM 176
R P + ++ K D+L P +S ASI+AK + + M
Sbjct: 110 -----GNRIPPNLMIPAQAVVKGDALVPEISAASILAKVARDQEM 149
>gi|160939135|ref|ZP_02086486.1| hypothetical protein CLOBOL_04029 [Clostridium bolteae ATCC
BAA-613]
gi|158438098|gb|EDP15858.1| hypothetical protein CLOBOL_04029 [Clostridium bolteae ATCC
BAA-613]
Length = 222
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+ G + P + L DSK L E++REELF ++K +V
Sbjct: 36 ICGIDEAGRGPLAGPVAAGAVVLP----KGCRILYLNDSKKLSEKRREELFLEIK-EKAV 90
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDS 106
W V + P + ++IN+ + ++++
Sbjct: 91 AWNVGLASPARI-------DEINILQATYEA 114
>gi|17546137|ref|NP_519539.1| ribonuclease HII [Ralstonia solanacearum GMI1000]
gi|39932439|sp|Q8XZH7.1|RNH2_RALSO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|17428433|emb|CAD15120.1| probable ribonuclease hII (rnase hII) protein [Ralstonia
solanacearum GMI1000]
Length = 236
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 28/155 (18%)
Query: 18 GIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
G+DEAGRGP+ GP+ + P Q L ADSK L +KRE L++++ V ++
Sbjct: 31 GVDEAGRGPLAGPVTAAAVVLNPRKPIQGL-----ADSKVLTAKKREALYDEI-VEKALA 84
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
W V A + ++IN+ + + + V G+L V +D
Sbjct: 85 WHV-------AEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVD--------- 128
Query: 137 AKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAK 169
R P + F V K D+L P +S ASI+AK
Sbjct: 129 ---GNRCPQVAFAVEAIVKGDALVPAISAASILAK 160
>gi|86742269|ref|YP_482669.1| ribonuclease HII [Frankia sp. CcI3]
gi|123764526|sp|Q2J702.1|RNH2_FRASC RecName: Full=Ribonuclease HII; Short=RNase HII
gi|86569131|gb|ABD12940.1| Ribonuclease H [Frankia sp. CcI3]
Length = 240
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
G E AL + P + G+DEAGRG GP+V + +Q LA L ADSK L E+
Sbjct: 15 FGYERALNRHGLGP-VAGVDEAGRGACAGPLVIAAVILAPEARQRLARL--ADSKLLTEQ 71
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKIN 98
RE +FED+ + + W+ +I E+ L+ I
Sbjct: 72 IRESVFEDV-MAAAAAWSTVVISAAEIDRVGLHVANIT 108
>gi|301103372|ref|XP_002900772.1| ribonuclease HII [Phytophthora infestans T30-4]
gi|262101527|gb|EEY59579.1| ribonuclease HII [Phytophthora infestans T30-4]
Length = 249
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++G+DEAGRGP+ GP+V + P T+A ++ DSK + E +RE LFE L + +
Sbjct: 46 TVIGVDEAGRGPLAGPVVAAACHVPLDV--TIAGID--DSKKILEPQREALFELLTSHPN 101
Query: 75 VGWAVDIIDPREL 87
+ +AV + P+ +
Sbjct: 102 ITYAVHVNSPQRI 114
>gi|189499018|ref|YP_001958488.1| ribonuclease HII [Chlorobium phaeobacteroides BS1]
gi|189494459|gb|ACE03007.1| Ribonuclease H [Chlorobium phaeobacteroides BS1]
Length = 207
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W + C+ GIDEAGRGP+ GP+V + P ++ DSKTL+ ++R L E +
Sbjct: 13 WHEHTCVCGIDEAGRGPLAGPVVAAAVMFPRYFKPEGVLTGLNDSKTLRPKQRSALAEAI 72
Query: 70 KVNDSVGWAVDIIDPREL-SAKMLNKNKINLN 100
+ + + +++ IID + S + N + +N
Sbjct: 73 Q-SAAECFSISIIDHTTIDSVNIFNATMLAMN 103
>gi|170760432|ref|YP_001787753.1| ribonuclease HII [Clostridium botulinum A3 str. Loch Maree]
gi|189043583|sp|B1KWN1.1|RNH2_CLOBM RecName: Full=Ribonuclease HII; Short=RNase HII
gi|169407421|gb|ACA55832.1| ribonuclease HII [Clostridium botulinum A3 str. Loch Maree]
Length = 269
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
++ +N I G+DE GRGP+ GP+V + + ++ N DSK L E+KREEL D
Sbjct: 78 RYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKKREEL--D 135
Query: 69 LKVND-SVGWAVDIIDPRELSAK 90
+ + + ++ + + ++D + + +
Sbjct: 136 IIIREKAISYNIALVDNKTIDER 158
>gi|157364353|ref|YP_001471120.1| ribonuclease HII/HIII [Thermotoga lettingae TMO]
gi|157314957|gb|ABV34056.1| ribonuclease HII/HIII [Thermotoga lettingae TMO]
Length = 305
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 22/171 (12%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G DE G+G V GP+V +Y C L ++ DSK++ + K E+ + K+ +
Sbjct: 103 IGSDEVGKGDVFGPVVVTAVYIGCKEYVALKDVDIKDSKSINDRKILEISK--KIKNICP 160
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
A+ + +P LN+ KIN+N + I I+RVL L VY D G A+K +
Sbjct: 161 HAIVVFEPER-----LNEKKINMNRLLEQMHIDAISRVLEKRSSLIAVY-DDFG-AKKDR 213
Query: 137 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK---------RSNFERMDI 178
+ ++ I F K V+ ASIV++ RS F M+I
Sbjct: 214 MRSVEQLTLIGF----KNGERNLAVAAASIVSRAEFLNWIETRSKFYEMEI 260
>gi|153940580|ref|YP_001391739.1| ribonuclease HII [Clostridium botulinum F str. Langeland]
gi|170755844|ref|YP_001781984.1| ribonuclease HII [Clostridium botulinum B1 str. Okra]
gi|384462747|ref|YP_005675342.1| ribonuclease HII [Clostridium botulinum F str. 230613]
gi|429243864|ref|ZP_19207348.1| ribonuclease HII [Clostridium botulinum CFSAN001628]
gi|189043581|sp|B1II72.1|RNH2_CLOBK RecName: Full=Ribonuclease HII; Short=RNase HII
gi|189043582|sp|A7GG29.1|RNH2_CLOBL RecName: Full=Ribonuclease HII; Short=RNase HII
gi|152936476|gb|ABS41974.1| ribonuclease HII [Clostridium botulinum F str. Langeland]
gi|169121056|gb|ACA44892.1| ribonuclease HII [Clostridium botulinum B1 str. Okra]
gi|295319764|gb|ADG00142.1| ribonuclease HII [Clostridium botulinum F str. 230613]
gi|428759070|gb|EKX81459.1| ribonuclease HII [Clostridium botulinum CFSAN001628]
Length = 269
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
++ +N I G+DE GRGP+ GP+V + + ++ N DSK L E+KREEL D
Sbjct: 78 RYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKKREEL--D 135
Query: 69 LKVND-SVGWAVDIIDPRELSAK 90
+ + + ++ + + ++D + + +
Sbjct: 136 IIIREKAISYNIALVDNKTIDER 158
>gi|358066999|ref|ZP_09153485.1| hypothetical protein HMPREF9333_00365 [Johnsonella ignava ATCC
51276]
gi|356694848|gb|EHI56503.1| hypothetical protein HMPREF9333_00365 [Johnsonella ignava ATCC
51276]
Length = 228
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K+ CI GIDEAGRGP+ GP+V C+ P + L DSK + +++R ELFE+
Sbjct: 40 KYDEYSCICGIDEAGRGPLAGPVVAACVILP----KDTEILFLNDSKKVTKKRRLELFEE 95
Query: 69 LKVNDSVGWAVDIID 83
+ +V V IID
Sbjct: 96 I-CYKAVDIGVGIID 109
>gi|297569140|ref|YP_003690484.1| ribonuclease H [Desulfurivibrio alkaliphilus AHT2]
gi|296925055|gb|ADH85865.1| Ribonuclease H [Desulfurivibrio alkaliphilus AHT2]
Length = 218
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGP+ GP+V C+ P + + F DSK LK E R L +++ V
Sbjct: 30 VAGIDEAGRGPLAGPVVAACVVLPAGCEAS----RFRDSKQLKPELRCRLAAEIEALPGV 85
Query: 76 GWAVDIIDPREL 87
W V ++ P E+
Sbjct: 86 YWGVGVVAPAEI 97
>gi|167040339|ref|YP_001663324.1| ribonuclease HII [Thermoanaerobacter sp. X514]
gi|300914423|ref|ZP_07131739.1| Ribonuclease H [Thermoanaerobacter sp. X561]
gi|307724341|ref|YP_003904092.1| Ribonuclease H [Thermoanaerobacter sp. X513]
gi|166854579|gb|ABY92988.1| Ribonuclease H [Thermoanaerobacter sp. X514]
gi|300889358|gb|EFK84504.1| Ribonuclease H [Thermoanaerobacter sp. X561]
gi|307581402|gb|ADN54801.1| Ribonuclease H [Thermoanaerobacter sp. X513]
Length = 242
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP++GP+V C+ P + + DSK L EEKRE L E +K ++
Sbjct: 60 IAGVDEAGRGPLVGPVVAACVILP----KEVFIPEINDSKKLSEEKREVLSEVIK-KVAI 114
Query: 76 GWAVDIIDPREL 87
+A+ I+D E+
Sbjct: 115 SYAIGIVDCEEI 126
>gi|167037678|ref|YP_001665256.1| ribonuclease HII [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|320116093|ref|YP_004186252.1| Ribonuclease H [Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|166856512|gb|ABY94920.1| Ribonuclease H [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|319929184|gb|ADV79869.1| Ribonuclease H [Thermoanaerobacter brockii subsp. finnii Ako-1]
Length = 242
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP++GP+V C+ P + + DSK L EEKRE L E +K ++
Sbjct: 60 IAGVDEAGRGPLVGPVVAACVILP----KEVFIPEINDSKKLSEEKREVLSEVIK-KVAI 114
Query: 76 GWAVDIIDPREL 87
+A+ I+D E+
Sbjct: 115 SYAIGIVDCEEI 126
>gi|392940897|ref|ZP_10306541.1| ribonuclease HII [Thermoanaerobacter siderophilus SR4]
gi|392292647|gb|EIW01091.1| ribonuclease HII [Thermoanaerobacter siderophilus SR4]
Length = 242
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP++GP+V C+ P + + DSK L EEKRE L E +K ++
Sbjct: 60 IAGVDEAGRGPLVGPVVAACVILP----KEVFIPEINDSKKLSEEKREVLSEIIK-KVAI 114
Query: 76 GWAVDIIDPREL 87
+A+ I+D E+
Sbjct: 115 SYAIGIVDCEEI 126
>gi|48478335|ref|YP_024041.1| ribonuclease HII [Picrophilus torridus DSM 9790]
gi|73917829|sp|Q6KZK4.1|RNH2_PICTO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|48430983|gb|AAT43848.1| ribonuclease HII [Picrophilus torridus DSM 9790]
Length = 199
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 21/157 (13%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNF--ADSKTLKEEKREELFEDLKVN 72
C+ GIDEAGRGPV+GPMV + C +NF DSK L KR +F D+
Sbjct: 2 CVCGIDEAGRGPVIGPMVMA-MVCA-------DDINFYVNDSKLLTRNKRSLIFNDVS-- 51
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ II+P E+ + K +LN + A LI + ++Y+D
Sbjct: 52 -GLYHKYYIINPAEIDDAV---KKHSLNNLEEQYAEKLILKA-----ECEKIYIDCFDVN 102
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E ++ + + + AD +VS ASI+AK
Sbjct: 103 ESRLERILKDRTGKEVICRHHADRDIKIVSAASIIAK 139
>gi|402574089|ref|YP_006623432.1| ribonuclease HII [Desulfosporosinus meridiei DSM 13257]
gi|402255286|gb|AFQ45561.1| ribonuclease HII [Desulfosporosinus meridiei DSM 13257]
Length = 260
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+V G P ++ L LN DSK L E KRE+LF ++ ++
Sbjct: 75 LAGVDEAGRGPLAGPVVAGACILPAKFE--LPGLN--DSKMLTESKREKLFIQIQ-KQAI 129
Query: 76 GWAVDIIDPRELSA 89
+AV +P E+ A
Sbjct: 130 DYAVGSAEPAEIDA 143
>gi|262038337|ref|ZP_06011718.1| ribonuclease HII [Leptotrichia goodfellowii F0264]
gi|261747641|gb|EEY35099.1| ribonuclease HII [Leptotrichia goodfellowii F0264]
Length = 205
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
MGS A + N I+G+DEAGRGP+ GP+V + Y + L +N DSK L E+
Sbjct: 1 MGSLAEFDN-SYNKIIVGVDEAGRGPLAGPVVAAAVII-IQYFKELDEIN--DSKKLSEK 56
Query: 61 KREELFEDLKVNDSVGWAVDIIDPREL 87
KRE+LFE +K VG I D +E+
Sbjct: 57 KREQLFELIKEKCIVGTG--IADEKEI 81
>gi|238916977|ref|YP_002930494.1| ribonuclease HII [Eubacterium eligens ATCC 27750]
gi|238872337|gb|ACR72047.1| ribonuclease HII [Eubacterium eligens ATCC 27750]
Length = 218
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+V G + P + L DSK L E+KR+ELF+ +K +++
Sbjct: 38 ICGIDEAGRGPLAGPVVAGAVILPKGKR----ILYVNDSKKLSEKKRDELFDVIK-EEAL 92
Query: 76 GWAVDIIDPREL 87
+ + I+ P +
Sbjct: 93 SYGIGIVSPERI 104
>gi|374328021|ref|YP_005086221.1| ribonuclease HII [Pyrobaculum sp. 1860]
gi|356643290|gb|AET33969.1| ribonuclease HII [Pyrobaculum sp. 1860]
Length = 195
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 19/157 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF-EDLKVNDS 74
I G+DEAGRGPV+GP+V + + L L DSK L RE L+ E L+V++
Sbjct: 2 IAGVDEAGRGPVVGPLVIAVV---AGDGEALRRLGVRDSKKLTPGAREVLYREVLRVSEC 58
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV-YLDTVG-DA 132
V + V ++P E+ + ++ +N E+ + + + I + +V Y+D+ DA
Sbjct: 59 VNYVV--VEPYEVD-RYASRGLLNALELDYTARL--------IELCPADVYYVDSPDVDA 107
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
++Y + LS F + + VV+ P V+ ASIVAK
Sbjct: 108 DRYGSGLS--FLTGRRVVALHKGEKVPQVAAASIVAK 142
>gi|415886554|ref|ZP_11548334.1| ribonuclease HII [Bacillus methanolicus MGA3]
gi|387587241|gb|EIJ79564.1| ribonuclease HII [Bacillus methanolicus MGA3]
Length = 259
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 30/161 (18%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+V + P + L ++ DSK L + KREEL+E + + +V
Sbjct: 73 IAGIDEAGRGPLAGPVVAAAVILPPEF--YLPGID--DSKKLSKAKREELYEMITSSGAV 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ ++D E+ ++IN++E + + + IT LDT D
Sbjct: 129 -IGIGMVDSDEI-------DRINISEAAKKAMLEAITN------------LDTHPDCLLI 168
Query: 136 QA-KLSQRFPSIKFVVSKKADSLYPVVSGASIVAK--RSNF 173
A KL +PS + K D+ ++ ASIVAK R N+
Sbjct: 169 DAIKLDTPYPSESII---KGDAKSVSIAAASIVAKVVRDNY 206
>gi|303271053|ref|XP_003054888.1| ribonuclease HII [Micromonas pusilla CCMP1545]
gi|226462862|gb|EEH60140.1| ribonuclease HII [Micromonas pusilla CCMP1545]
Length = 256
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+V C + + L DSK + EE REE++E L N V
Sbjct: 62 VCGVDEAGRGPLAGPVVAAA----CVFPEDLVIDAINDSKQMTEEDREEVYEQLMENPEV 117
Query: 76 GWAVDIIDPREL 87
+V +ID +E+
Sbjct: 118 LKSVCVIDHKEI 129
>gi|344210764|ref|YP_004795084.1| RNAase HII [Haloarcula hispanica ATCC 33960]
gi|343782119|gb|AEM56096.1| RNAase HII [Haloarcula hispanica ATCC 33960]
Length = 211
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 15/155 (9%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-DSV 75
G+DEAG+GPVLG M DSK ++ E+RE L D++ + D+V
Sbjct: 3 FGVDEAGKGPVLGSM----FAAAVRADPAALPDGVGDSKDIRPERRERLAGDIRESADAV 58
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
G A E+ + ++ ++ ++N ++ D ++ V G+ T DT DA ++
Sbjct: 59 GVA-------EIPVERIDADRTDMNTLTVDGQAEALSAVARDGLSGTVDAGDT--DAARF 109
Query: 136 QAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAK 169
+++ + + AD P+V ASIVAK
Sbjct: 110 GRRVADAVDTDVAVTAEHGADETDPLVGAASIVAK 144
>gi|448599595|ref|ZP_21655398.1| ribonuclease HII [Haloferax alexandrinus JCM 10717]
gi|445736268|gb|ELZ87812.1| ribonuclease HII [Haloferax alexandrinus JCM 10717]
Length = 215
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 15/165 (9%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+G+DEAG+GPVLGPMV + P + ADSK L E+REEL +L+ D +
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVRADPDALPD-----GIADSKRLAPERREELAAELRERDDI 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR---VLNIGILLTEVYLDTVGDA 132
V ++P + + N + + +A V + G + +
Sbjct: 58 SVGVAFVEPETIDDPETDMNLLTVRAQVEAAAEVAADADELVCDAGDVSESRF------G 111
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
+ + L++ S++ +AD + +V ASIVAK R++
Sbjct: 112 RRVREGLAEAGVSVEVRAQHRADDEHAIVGAASIVAKVERDRRVE 156
>gi|435846199|ref|YP_007308449.1| RNase HII [Natronococcus occultus SP4]
gi|433672467|gb|AGB36659.1| RNase HII [Natronococcus occultus SP4]
Length = 224
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 22/165 (13%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
G+DEAG+GPVLG M ++ S L ADSK L E+REEL L+ +D +
Sbjct: 3 FGVDEAGKGPVLGSMFAAAVH--VSEPDALPE-GIADSKRLAPERREELDATLREDDRIA 59
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL-------DTV 129
V E++ +++ + ++N ++ + I L L + DT
Sbjct: 60 VGV-----SEITPPLIDDPETDMNSLAVRAHAEAIEGALEAAELPADPSASGRCDACDT- 113
Query: 130 GDAEKYQAKLS-----QRFPSIKFVVSKKADSLYPVVSGASIVAK 169
DA+++ +++ +R ++ + AD P+V AS+VAK
Sbjct: 114 -DADRFARRVADTCEPERDLELELTAAHGADDEDPIVGAASVVAK 157
>gi|448360110|ref|ZP_21548753.1| ribonuclease HII [Natrialba chahannaoensis JCM 10990]
gi|445640487|gb|ELY93575.1| ribonuclease HII [Natrialba chahannaoensis JCM 10990]
Length = 221
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 12/157 (7%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAG+GP LG M ++ ++T+ DSK L +R+EL L+ +D +G
Sbjct: 3 IGVDEAGKGPALGSMFAAAVHV---ERETVLPDGITDSKQLTPARRDELATTLREDDRIG 59
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEIS---HDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
V E++ ++ + ++N +S H AI + + +T DA+
Sbjct: 60 VGV-----AEITIAQIDDPETDMNSLSVLAHAEAIEAVACDAGLETPITGHCDACDTDAD 114
Query: 134 KYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAK 169
++ +++ + AD P+V ASI+AK
Sbjct: 115 RFARRVADQCGLECTITAEHGADDDSPIVGAASIIAK 151
>gi|210615856|ref|ZP_03290818.1| hypothetical protein CLONEX_03037 [Clostridium nexile DSM 1787]
gi|210150059|gb|EEA81068.1| hypothetical protein CLONEX_03037 [Clostridium nexile DSM 1787]
Length = 252
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K+A I GIDE GRGP+ GP+V G + P + L DSK L E++REEL+++
Sbjct: 65 KYAHFSYICGIDEVGRGPLAGPVVAGAVILP----KDCEILYLNDSKKLSEKRREELYDE 120
Query: 69 LKVNDSVGWAVDIIDP 84
+ + ++ + I+ P
Sbjct: 121 I-MEKAIATGIGIVSP 135
>gi|197303275|ref|ZP_03168316.1| hypothetical protein RUMLAC_01998 [Ruminococcus lactaris ATCC
29176]
gi|197297701|gb|EDY32260.1| ribonuclease HII [Ruminococcus lactaris ATCC 29176]
Length = 252
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 72/136 (52%), Gaps = 23/136 (16%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K++ CI GIDEAGRGP+ GP+V G + P + L DSK L +REEL+++
Sbjct: 65 KYSQYRCICGIDEAGRGPLAGPVVAGAVILPADCE----ILYLNDSKKLSAARREELYDE 120
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDS---AIGLITR----VLNIGILL 121
+ + +V + + P + ++IN+ + ++++ A+ ++R +LN + +
Sbjct: 121 I-MEKAVATGIGMASPARI-------DEINILQATYEAMREAVSKLSREPDLLLNDAVTI 172
Query: 122 TEVYLDTV----GDAE 133
E+ + V GDA+
Sbjct: 173 PEMTIMQVPIIKGDAK 188
>gi|334142196|ref|YP_004535403.1| ribonuclease HII [Novosphingobium sp. PP1Y]
gi|333940227|emb|CCA93585.1| ribonuclease HII [Novosphingobium sp. PP1Y]
Length = 211
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 18/158 (11%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
S ++G+DEAGRGP+ GP+V G + C + + DSK L + +R +L E +K
Sbjct: 15 SGGIVIGVDEAGRGPLAGPVVAGAVLL-CKPRPS----GLDDSKKLSKARRLQLEEVIK- 68
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
WAV ++D E+ N ++ A+ + NIG EV +D G+
Sbjct: 69 -RRCQWAVGVVDVEEID----RLNIFGATMLAMTRAVAALCD--NIGTEPDEVLVD--GN 119
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+ + R+ + V D+L P +S ASI+AK
Sbjct: 120 MTPHGRREEWRWKARAIV---GGDALEPCISAASIIAK 154
>gi|346225808|ref|ZP_08846950.1| ribonuclease HII [Anaerophaga thermohalophila DSM 12881]
Length = 210
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 26/167 (15%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
A P + G DEAGRG + GP+V + P + L LN DSK L E+KR +L +
Sbjct: 24 ADGPLVAGCDEAGRGCLAGPVVAAAVILPEDFDHPL--LN--DSKQLSEKKR-DLLRTII 78
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGI-LLTEVYLDTV 129
+S+ WAV ++ E+ ++IN+ S R +++ I L L +
Sbjct: 79 EKESLAWAVAMVHNEEI-------DQINILNAS--------IRAMHLAIEQLKPQPLSLL 123
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
D ++ + K K DS+Y ++ ASI+AK E M
Sbjct: 124 IDGNRFHP-----YEKTKHKCIVKGDSIYKCIAAASILAKTHRDEYM 165
>gi|331085160|ref|ZP_08334246.1| hypothetical protein HMPREF0987_00549 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330407943|gb|EGG87433.1| hypothetical protein HMPREF0987_00549 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 254
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K+ I GIDE GRGP+ GP+V G + P Q L DSK L E++REEL+E
Sbjct: 65 KYRDAAFICGIDEVGRGPLAGPVVAGAVILPKDSQ----ILYLNDSKKLTEKRREELYEV 120
Query: 69 LKVNDSVGWAVDIIDP 84
+ + ++V + I+ P
Sbjct: 121 I-MREAVAVGIGIVSP 135
>gi|325661112|ref|ZP_08149739.1| hypothetical protein HMPREF0490_00472 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325472619|gb|EGC75830.1| hypothetical protein HMPREF0490_00472 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 254
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K+ I GIDE GRGP+ GP+V G + P Q L DSK L E++REEL+E
Sbjct: 65 KYRDAAFICGIDEVGRGPLAGPVVAGAVILPKDSQ----ILYLNDSKKLTEKRREELYEV 120
Query: 69 LKVNDSVGWAVDIIDP 84
+ + +++ + I+ P
Sbjct: 121 I-MREAIAVGIGIVSP 135
>gi|260889965|ref|ZP_05901228.1| ribonuclease HII [Leptotrichia hofstadii F0254]
gi|260860571|gb|EEX75071.1| ribonuclease HII [Leptotrichia hofstadii F0254]
Length = 198
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 59/103 (57%), Gaps = 8/103 (7%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
N ++G+DEAGRGP+ GP+V G + + + L +N DSK L E+KRE LFE ++ N
Sbjct: 8 NKIVVGVDEAGRGPLAGPVVAGAVIVIQDFPE-LQEIN--DSKKLTEKKRERLFEAIEKN 64
Query: 73 DSVGWAV----DIIDPRELSAKMLNKNKINLNEISHDSAIGLI 111
VG + +I + L+A L + +N+++ SA ++
Sbjct: 65 CIVGIGIASEKEIDEMNILNATFLAMRRA-INQVAEKSAFDIV 106
>gi|326204815|ref|ZP_08194669.1| Ribonuclease H [Clostridium papyrosolvens DSM 2782]
gi|325985027|gb|EGD45869.1| Ribonuclease H [Clostridium papyrosolvens DSM 2782]
Length = 255
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 27/155 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+V + P + L DSK L E +RE+LF+++K ++
Sbjct: 74 IAGVDEAGRGPLAGPVVAAAVVLP----KGLTIEGVNDSKKLSEAQREKLFDEIK-EKAL 128
Query: 76 GWAVDIIDPREL-SAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ + ++D + + +LN K+ + E A+ + + + ILL V LD +
Sbjct: 129 SYGISVVDEKYIDEVNILNATKMAMTE-----ALNRLDPIADC-ILLDAVSLDNIS---- 178
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+++ P I K DSL ++ ASI+AK
Sbjct: 179 -----TKQVPII------KGDSLSLSIAAASILAK 202
>gi|374582894|ref|ZP_09655988.1| ribonuclease HII [Desulfosporosinus youngiae DSM 17734]
gi|374418976|gb|EHQ91411.1| ribonuclease HII [Desulfosporosinus youngiae DSM 17734]
Length = 260
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+V G P + L LN DSK L E KRE+L+ + N ++
Sbjct: 75 LAGVDEAGRGPLAGPVVAGACILPAKF--DLPGLN--DSKMLTESKREKLYTQI-CNQAI 129
Query: 76 GWAVDIIDPRELSA 89
+A+ +P E+ A
Sbjct: 130 DYAIGSAEPAEIDA 143
>gi|448689619|ref|ZP_21695203.1| ribonuclease HII [Haloarcula japonica DSM 6131]
gi|445777890|gb|EMA28850.1| ribonuclease HII [Haloarcula japonica DSM 6131]
Length = 211
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 15/155 (9%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVNDSV 75
G+DEAG+GPVLG M DSK +K E+RE L E++ K D+V
Sbjct: 3 FGVDEAGKGPVLGSM----FAAAVRADPAALPNGVGDSKDIKPERRERLAEEIRKSADAV 58
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
G A E+ + ++ + ++N ++ D ++ V G+ T DT DA ++
Sbjct: 59 GVA-------EIPVERIDADGTDMNTLTVDGQAEALSAVARDGLSGTVDAGDT--DAARF 109
Query: 136 QAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAK 169
+++ + + AD P+V ASI+AK
Sbjct: 110 GRRVADAVDADVTVTAEHGADETDPLVGAASIIAK 144
>gi|392391148|ref|YP_006427751.1| ribonuclease HII [Ornithobacterium rhinotracheale DSM 15997]
gi|390522226|gb|AFL97957.1| ribonuclease HII [Ornithobacterium rhinotracheale DSM 15997]
Length = 198
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 30/164 (18%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G DEAGRG + GP+V G + P ++ L+ DSK L ++KR +L E ++ +++
Sbjct: 12 VGCDEAGRGCLAGPVVAGAVILPPDFK----NLDLNDSKQLSKKKRNQLREIIE-REALD 66
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
WAV + P+E+ +++N +LN IL +D + ++
Sbjct: 67 WAVAFVSPQEI-------DEVN---------------ILNASILAMHRAIDKLSLKPEFI 104
Query: 137 AKLSQRFPSIKFVVSK---KADSLYPVVSGASIVAKRSNFERMD 177
A +F + + + + K D+ Y ++ ASI+AK E M+
Sbjct: 105 AVDGDKFKNYQNLPHQCCIKGDANYMSIAAASILAKTHRDEYME 148
>gi|268324099|emb|CBH37687.1| ribonuclease HII [uncultured archaeon]
gi|268326416|emb|CBH40004.1| ribonuclease HII [uncultured archaeon]
Length = 210
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 80/160 (50%), Gaps = 24/160 (15%)
Query: 17 MGIDEAGRGPVLGPM-VYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+G+DEAGRGPV+G M V G L L L DSK L +RE L + + D+
Sbjct: 6 IGVDEAGRGPVIGSMFVAGVLNY-----DGLEELGVKDSKRLSASRREHLAK--IIEDAT 58
Query: 76 GWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DA 132
V ++ E++A ++K + LN+I+ + L + V+N ++D
Sbjct: 59 --EVHVV---EMTASEIDKAREERTLNKIT----VELFSEVIN-HFQPARAFVDAADVKP 108
Query: 133 EKYQAKLS---QRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E++ A L +R ++ + KAD YPVVS ASIVAK
Sbjct: 109 ERFAANLRSNYKRVGELEIISEWKADDHYPVVSAASIVAK 148
>gi|281422598|ref|ZP_06253597.1| ribonuclease HII [Prevotella copri DSM 18205]
gi|281403268|gb|EFB33948.1| ribonuclease HII [Prevotella copri DSM 18205]
Length = 215
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 71/163 (43%), Gaps = 30/163 (18%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G DEAGRG + G + + P YQ A LN DSK L ++KR+ L E ++ D+V W
Sbjct: 27 GCDEAGRGCLAGSVYAAAVILPPGYQN--AELN--DSKKLTDKKRKALREQIE-RDAVAW 81
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
AV I+ P E+ +KIN +LN L LD + +
Sbjct: 82 AVGIVTPEEI-------DKIN---------------ILNASFLAMHRALDQLKVRPEAVI 119
Query: 138 KLSQRFPSIK---FVVSKKADSLYPVVSGASIVAKRSNFERMD 177
RF K + K D Y ++ ASI+AK + MD
Sbjct: 120 VDGNRFKPYKDLPYTTIVKGDGKYMAIAAASILAKTYRDDYMD 162
>gi|225849921|ref|YP_002730155.1| ribonuclease HII [Persephonella marina EX-H1]
gi|225645751|gb|ACO03937.1| ribonuclease HII [Persephonella marina EX-H1]
Length = 198
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGPV GP+V + P Q + F DSK L +++REELF +K ++
Sbjct: 16 IAGIDEAGRGPVAGPVVAASVIFP----QNIEPFIFKDSKKLTKKQREELFTQIK-ERAL 70
Query: 76 GWAVDIID 83
+ I+D
Sbjct: 71 AVGIGIVD 78
>gi|448577303|ref|ZP_21642933.1| ribonuclease HII [Haloferax larsenii JCM 13917]
gi|445727948|gb|ELZ79557.1| ribonuclease HII [Haloferax larsenii JCM 13917]
Length = 215
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 13/164 (7%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAG+GPVLGPMV + + +TL ADSK L +REEL +L+ D +
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVR---ADPETLPE-GIADSKRLTPARREELAAELRERDDIS 58
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR---VLNIGILLTEVYLDTVGDAE 133
V ++P + + N + + +A + V + G + + V D
Sbjct: 59 VGVAFVEPETIDDPETDMNLLTVRAQVEAAAAVAVDADELVCDAGDVSESRFGRRVRDG- 117
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
+++ S++ +AD + +V ASIVAK R++
Sbjct: 118 -----VAEAGASVEVHAQHRADDEHAIVGAASIVAKVERDRRVE 156
>gi|257052068|ref|YP_003129901.1| ribonuclease HII [Halorhabdus utahensis DSM 12940]
gi|256690831|gb|ACV11168.1| ribonuclease HII [Halorhabdus utahensis DSM 12940]
Length = 234
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 19/156 (12%)
Query: 18 GIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
G+DEAG+GPVLG M C+ P + DSK L E+REEL ++
Sbjct: 26 GVDEAGKGPVLGSMFAACVVADPADLPD-----DVDDSKDLSAERREELATVIR---DRA 77
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD--AEK 134
AV + E+ ++ + ++N ++ + + V + G+ YLD GD A +
Sbjct: 78 HAVAV---SEIPVARIDDTETDMNTLTVVAHAEALEPVASDGLA---TYLD-AGDTNAVR 130
Query: 135 YQAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAK 169
++ +++ R + + AD+ YP+V ASI+AK
Sbjct: 131 FERRVADRIEADLDLRAEHGADAAYPIVGAASIIAK 166
>gi|448679235|ref|ZP_21690072.1| ribonuclease HII [Haloarcula argentinensis DSM 12282]
gi|445771333|gb|EMA22390.1| ribonuclease HII [Haloarcula argentinensis DSM 12282]
Length = 211
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-DS 74
G+DEAG+GPVLG M + P + DSK +K E+RE L E+++ + D+
Sbjct: 3 FGVDEAGKGPVLGSMFAAAVRADPVTLPD-----GVGDSKDIKPERRERLAEEIRESADA 57
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
VG A E+ + ++ ++ ++N ++ D+ ++ V + T DT DA +
Sbjct: 58 VGVA-------EVPVERIDADETDMNTLTVDAQATALSTVARDNLSGTVDAGDT--DATR 108
Query: 135 YQAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAK 169
+ +++ + + AD VV ASI+AK
Sbjct: 109 FGRRVADAVDADVTVTAEHGADETDTVVGAASIIAK 144
>gi|424827561|ref|ZP_18252348.1| ribonuclease HII [Clostridium sporogenes PA 3679]
gi|365980001|gb|EHN16042.1| ribonuclease HII [Clostridium sporogenes PA 3679]
Length = 269
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 8 PKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE 67
++ + I G+DE GRGP+ GP+V + + ++ LN DSK L E+KREEL
Sbjct: 77 KRYVDSYLIAGVDEVGRGPLAGPIVAAAVILDLNVEEMHRILNIKDSKKLSEKKREEL-- 134
Query: 68 DLKVND-SVGWAVDIIDPRELSAK 90
D+ + + ++ + + ++D + + +
Sbjct: 135 DIIIREKAISYNIALVDNKTIDER 158
>gi|357419366|ref|YP_004932358.1| RNase HII [Thermovirga lienii DSM 17291]
gi|355396832|gb|AER66261.1| RNase HII [Thermovirga lienii DSM 17291]
Length = 186
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++G+DEAGRGP+ GP+V +Y + L +L DSK L ++RE LFE + +N V
Sbjct: 3 VVGVDEAGRGPLAGPVVAAAVYLENWQTRELLSLGLNDSKKLSPKRREALFEAV-LNMGV 61
Query: 76 GWAVDIIDP 84
W P
Sbjct: 62 CWRAQAASP 70
>gi|320527486|ref|ZP_08028667.1| ribonuclease HII [Solobacterium moorei F0204]
gi|320132199|gb|EFW24748.1| ribonuclease HII [Solobacterium moorei F0204]
Length = 208
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W I+GIDEAGRGP+ GP+ + P Y+ + DSK++ E+KR+ LFE +
Sbjct: 16 WPLEKLIIGIDEAGRGPLAGPLTVAGVVFPIGYENP----DIYDSKSISEKKRDALFEQI 71
Query: 70 KVNDSVGWAVDIIDPRELSA-KMLNKNKINLNEIS-HDSAIGLITRVLNIGILLTEVYLD 127
+ D++ + + + P ++ + +++ + +I+ H A ++T + + I E+
Sbjct: 72 Q-EDALWFEIIQVSPEDIDKYNIYRADQLAMEQIAIHSDAEIVLTDAMPLIIEGKEIIPL 130
Query: 128 TVGD 131
GD
Sbjct: 131 VKGD 134
>gi|300691590|ref|YP_003752585.1| ribonuclease HII (RNase HII) [Ralstonia solanacearum PSI07]
gi|299078650|emb|CBJ51308.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum PSI07]
Length = 242
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 26/154 (16%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGP+ GP+ + + ++ + L ADSK L +KRE L++++ V ++ W
Sbjct: 37 GVDEAGRGPLAGPVTAAAVV--LNPRKPIKGL--ADSKVLTAKKREALYDEI-VEKALAW 91
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
V A + ++IN+ + + + V G+L V +D
Sbjct: 92 HV-------AEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVD---------- 134
Query: 138 KLSQRFPSIKFVVSK--KADSLYPVVSGASIVAK 169
R P + F V K D+L P +S ASI+AK
Sbjct: 135 --GNRCPQVAFAVEAIVKGDALVPAISAASILAK 166
>gi|374997102|ref|YP_004972601.1| ribonuclease HII [Desulfosporosinus orientis DSM 765]
gi|357215468|gb|AET70086.1| ribonuclease HII [Desulfosporosinus orientis DSM 765]
Length = 260
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+V G P + L LN DSK L E KRE+LF ++ ++
Sbjct: 75 LAGVDEAGRGPLAGPVVAGACILPAKF--NLPGLN--DSKLLTESKREKLFVQIQ-KQAI 129
Query: 76 GWAVDIIDPRELSA 89
+A+ +P E+ A
Sbjct: 130 DYAIGSAEPAEIDA 143
>gi|244539013|dbj|BAH83056.1| ribonuclease HII [Candidatus Ishikawaella capsulata Mpkobe]
Length = 206
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 30/168 (17%)
Query: 7 LPKWAS-----NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEK 61
L +W + N I G+DEAGRGP+ G ++ + S+ DSK L E+K
Sbjct: 7 LHRWMTLVKKMNVLIAGVDEAGRGPLAGSVISAAVILNVSHPIN----GLKDSKKLSEKK 62
Query: 62 REELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILL 121
R LFE++ + +++ W + +P E+ A N + IS AI + IL
Sbjct: 63 RLLLFENI-IKNAISWNIGRAEPAEIDA----VNILQATMISMQRAIE------GLSILP 111
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
V++D K+ K++ PS FV K D+ +S ASI+AK
Sbjct: 112 DYVFIDG-----KHPPKIN--IPSRCFV---KGDNFIAEISAASILAK 149
>gi|433637107|ref|YP_007282867.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Halovivax
ruber XH-70]
gi|433288911|gb|AGB14734.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Halovivax
ruber XH-70]
Length = 232
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 76/177 (42%), Gaps = 30/177 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAG+GP +GPM+ + ++ ADSK L ++RE+L L+ D V
Sbjct: 2 VFGVDEAGKGPAIGPMIAVAVRV---ADRSHLPDGMADSKDLAPDRREDLAARLRAADDV 58
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG----- 130
V I ++ ++ + ++N ++ + I L + LD G
Sbjct: 59 AVGVCAI-----TSDRIDDPETDMNGLA------VAAHAGAIEAALADAGLDGAGTDDDP 107
Query: 131 ----------DAEKYQAKLSQRF-PSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
DA+++ +++ P I AD+ P+V ASIVAK RM
Sbjct: 108 PAGICDACDTDADRFARRVTDACSPPIDVAAKHGADADDPLVGAASIVAKVERDARM 164
>gi|344169900|emb|CCA82269.1| ribonuclease HII (RNase HII) [blood disease bacterium R229]
Length = 236
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 26/154 (16%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGP+ GP+ + + ++ + L ADSK L +KRE L++++ V ++ W
Sbjct: 31 GVDEAGRGPLAGPVTAAAVV--LNPRKPIKGL--ADSKVLTAKKREALYDEI-VEKALAW 85
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
V A + ++IN+ + + + V G+L V +D
Sbjct: 86 HV-------AEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVD---------- 128
Query: 138 KLSQRFPSIKFVVSK--KADSLYPVVSGASIVAK 169
R P + F V K D+L P +S ASI+AK
Sbjct: 129 --GNRCPQVAFAVEAIVKGDALVPAISAASILAK 160
>gi|260437013|ref|ZP_05790829.1| ribonuclease HII [Butyrivibrio crossotus DSM 2876]
gi|292810322|gb|EFF69527.1| ribonuclease HII [Butyrivibrio crossotus DSM 2876]
Length = 210
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 27/163 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+V + P Y L DSK L E KREE+++++ +V
Sbjct: 30 ICGIDEAGRGPLCGPVVAAAVILPDEYN----ILYINDSKKLSETKREEVYKEID-KYAV 84
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRV-LNIGILLTEVYLDTVGDAEK 134
+ V I+ P + ++IN+ + ++++ I ++ + ILL + + D
Sbjct: 85 AYGVGIVSPERI-------DEINILQATYEAMRTAIHKLSVTPDILLNDAVTIPMVD--- 134
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
IK V K D+ ++ ASIVAK + M+
Sbjct: 135 -----------IKQVPIIKGDAKSQSIAAASIVAKVTRDHLME 166
>gi|228940925|ref|ZP_04103484.1| Ribonuclease [Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228973854|ref|ZP_04134430.1| Ribonuclease [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228980444|ref|ZP_04140754.1| Ribonuclease [Bacillus thuringiensis Bt407]
gi|384187897|ref|YP_005573793.1| ribonuclease HII [Bacillus thuringiensis serovar chinensis CT-43]
gi|410676211|ref|YP_006928582.1| ribonuclease HII [Bacillus thuringiensis Bt407]
gi|452200276|ref|YP_007480357.1| Ribonuclease HII [Bacillus thuringiensis serovar thuringiensis str.
IS5056]
gi|228779264|gb|EEM27521.1| Ribonuclease [Bacillus thuringiensis Bt407]
gi|228785879|gb|EEM33882.1| Ribonuclease [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228818761|gb|EEM64827.1| Ribonuclease [Bacillus thuringiensis serovar berliner ATCC 10792]
gi|326941606|gb|AEA17502.1| ribonuclease HII [Bacillus thuringiensis serovar chinensis CT-43]
gi|409175340|gb|AFV19645.1| ribonuclease HII [Bacillus thuringiensis Bt407]
gi|452105669|gb|AGG02609.1| Ribonuclease HII [Bacillus thuringiensis serovar thuringiensis str.
IS5056]
Length = 257
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DEINIYQATKQA---MLDAVANLSYTPQHLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL P + K D+ +S ASI+AK
Sbjct: 173 --KLPTPIPQTSII---KGDAKSVSISAASIIAK 201
>gi|423385340|ref|ZP_17362596.1| ribonuclease HII [Bacillus cereus BAG1X1-2]
gi|423528302|ref|ZP_17504747.1| ribonuclease HII [Bacillus cereus HuB1-1]
gi|401635396|gb|EJS53151.1| ribonuclease HII [Bacillus cereus BAG1X1-2]
gi|402451965|gb|EJV83784.1| ribonuclease HII [Bacillus cereus HuB1-1]
Length = 257
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DEINIYQATKQA---MLDAVANLSYTPQHLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL P + K D+ +S ASI+AK
Sbjct: 173 --KLPTPIPQTSII---KGDAKSVSISAASIIAK 201
>gi|126466172|ref|YP_001041281.1| RNase HII [Staphylothermus marinus F1]
gi|126014995|gb|ABN70373.1| RNase HII [Staphylothermus marinus F1]
Length = 244
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 10/156 (6%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED-LKVNDSV 75
+GIDEAGRGP++G +V L + L ++ DSK L R + + LK+ D+V
Sbjct: 10 IGIDEAGRGPLIGDLVIAVLMINRDKIKNLISIGVRDSKQLTRHTRLIMAKKILKLADNV 69
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
++ I P + + N + A+ ++++++N +Y+D + + Y
Sbjct: 70 --SIIYISPEMIDS----YNINKIIAEKIIIALRMLSQIIN-HYRTVSIYIDEIKGYKNY 122
Query: 136 -QAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAK 169
LS+ +I ++V+ AD YPVVS ASI+AK
Sbjct: 123 ILTNLSKYINNIEEYVMEPNADQKYPVVSAASILAK 158
>gi|341581295|ref|YP_004761787.1| ribonuclease HII [Thermococcus sp. 4557]
gi|340808953|gb|AEK72110.1| ribonuclease HII [Thermococcus sp. 4557]
Length = 231
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGPV+GPM + L L DSK L +RE LF+++
Sbjct: 3 LAGIDEAGRGPVIGPMAIAAVVVDERNVPKLEELGVKDSKKLTPRRRERLFDEI------ 56
Query: 76 GWAVDIIDPR---ELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ ++D EL + ++ + LNE ++ + + ++ + +Y+D
Sbjct: 57 ---ISLLDDYVVLELWPEEIDSREGTLNEFEVENFVKALN---SLKVKPDVIYIDAADVK 110
Query: 133 E-KYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAK 169
E ++ + +R + + KAD + VS ASI+AK
Sbjct: 111 EARFGEDIGKRLDFKAEIIAEHKADDKFVPVSAASIIAK 149
>gi|257126162|ref|YP_003164276.1| ribonuclease H [Leptotrichia buccalis C-1013-b]
gi|257050101|gb|ACV39285.1| Ribonuclease H [Leptotrichia buccalis C-1013-b]
Length = 214
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 59/103 (57%), Gaps = 8/103 (7%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
N ++G+DEAGRGP+ GP+V G + + + L +N DSK L E+KRE LFE ++ N
Sbjct: 21 NKIVVGVDEAGRGPLAGPVVAGAVIVIQDFPE-LQEIN--DSKKLTEKKRERLFEAIEKN 77
Query: 73 DSVGWAV----DIIDPRELSAKMLNKNKINLNEISHDSAIGLI 111
VG + +I + L+A L + +N+++ SA ++
Sbjct: 78 CIVGIGIASEKEIDEMNILNATFLAMRRA-INQVAEKSAFDIV 119
>gi|448376204|ref|ZP_21559488.1| ribonuclease HII [Halovivax asiaticus JCM 14624]
gi|445658222|gb|ELZ11045.1| ribonuclease HII [Halovivax asiaticus JCM 14624]
Length = 235
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 17/170 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAG+GP +GPM+ + + ADSK L ++RE+L L+ D++
Sbjct: 6 VFGVDEAGKGPAIGPMIAAAVRV---ADRGHLPDGMADSKDLAPDRREDLAARLRSADAI 62
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG----- 130
V I P ++ + ++N ++ + G I L + +D
Sbjct: 63 AVGVCAITP-----DRIDDPETDMNGLAVAAHTGAIEAALADADHGSGADVDPPAGVCDA 117
Query: 131 ---DAEKYQAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
DA+++ +++ I AD+ P+V ASIVAK RM
Sbjct: 118 CDTDADRFARRVTDACSHPIDVAAEHGADADDPLVGAASIVAKVERDARM 167
>gi|304316917|ref|YP_003852062.1| ribonuclease H [Thermoanaerobacterium thermosaccharolyticum DSM
571]
gi|302778419|gb|ADL68978.1| Ribonuclease H [Thermoanaerobacterium thermosaccharolyticum DSM
571]
Length = 245
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 6/80 (7%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I G+DE GRGP+ GP+V GC+ P + + + DSK L EEKRE L E +K N +
Sbjct: 59 AIGGVDEVGRGPLAGPVVAGCVVLP----KDVFIPDVNDSKKLGEEKRELLSEVIKKN-A 113
Query: 75 VGWAVDIIDPREL-SAKMLN 93
+ + + IID + S +LN
Sbjct: 114 IAYGIGIIDNEYIDSVNILN 133
>gi|320354477|ref|YP_004195816.1| RNase HII [Desulfobulbus propionicus DSM 2032]
gi|320122979|gb|ADW18525.1| RNase HII [Desulfobulbus propionicus DSM 2032]
Length = 224
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+V C+ P T + DSKTL +RE LFE L N +
Sbjct: 34 VAGVDEAGRGPLAGPVVAACVILPADGDFT----PYVDSKTLTRRQRERLFELLSTNGAR 89
Query: 76 GWAVDIIDPREL 87
V PRE+
Sbjct: 90 -IGVGEASPREI 100
>gi|448730927|ref|ZP_21713230.1| ribonuclease HII [Halococcus saccharolyticus DSM 5350]
gi|445792521|gb|EMA43122.1| ribonuclease HII [Halococcus saccharolyticus DSM 5350]
Length = 223
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 21/163 (12%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
G+DEAGRGPVLG + C+ P + DSK L +RE + +L+ +D +
Sbjct: 5 FGVDEAGRGPVLGSLFVACVRADPAALPA-----GIDDSKRLSPARRETIAGELRDDDRI 59
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG----- 130
A RE++ ++ +LN ++ +A I V+++G E D +
Sbjct: 60 SIAT-----REVTPSEIDAPDTDLNALTIAAAGAAIDGVVSVG-ADAEAAADRMAGVIDA 113
Query: 131 ---DAEKYQAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAK 169
DAE++ ++ + + + AD Y +V AS+VAK
Sbjct: 114 CDTDAERFGRRVREATTADVAITAEHGADEEYDLVGAASVVAK 156
>gi|357053019|ref|ZP_09114123.1| ribonuclease HII [Clostridium clostridioforme 2_1_49FAA]
gi|355386444|gb|EHG33484.1| ribonuclease HII [Clostridium clostridioforme 2_1_49FAA]
Length = 218
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 12/91 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+ G + P + L DSK L E++RE+LF ++K +V
Sbjct: 34 ICGIDEAGRGPLAGPVAAGAVVLP----KGCRILYLNDSKKLSEKRREDLFLEIK-EKAV 88
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDS 106
W V + P + ++IN+ + ++++
Sbjct: 89 AWNVGLATPARI-------DEINILQATYEA 112
>gi|67613296|ref|XP_667291.1| ribonuclease H1 large subunit [Cryptosporidium hominis TU502]
gi|54658412|gb|EAL37062.1| ribonuclease H1 large subunit [Cryptosporidium hominis]
Length = 81
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 4 EAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTL 57
E + ++ I+GIDEAGRGPVLGPMVY CL+ P + L ++ D K L
Sbjct: 6 EENIHRFEHKEVILGIDEAGRGPVLGPMVYACLFYPKENENLLKMIS-VDGKLL 58
>gi|448570098|ref|ZP_21639092.1| ribonuclease HII [Haloferax lucentense DSM 14919]
gi|445723399|gb|ELZ75041.1| ribonuclease HII [Haloferax lucentense DSM 14919]
Length = 215
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 15/165 (9%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+G+DEAG+GPVLGPMV + P + ADSK L E+REEL +L+ D +
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVRADPDALPD-----GIADSKRLAPERREELAAELRECDDI 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR---VLNIGILLTEVYLDTVGDA 132
V ++P + + N + + +A V + G + +
Sbjct: 58 SVGVAFVEPETIDDPETDMNLLTVRAQVEAAADVAADADELVCDAGDVSESRF------G 111
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
+ + L++ S++ +AD + +V ASIVAK R++
Sbjct: 112 RRVREGLAEAGVSVEVRAQHRADDEHAIVGAASIVAKVERDRRVE 156
>gi|354610229|ref|ZP_09028185.1| ribonuclease HII [Halobacterium sp. DL1]
gi|353195049|gb|EHB60551.1| ribonuclease HII [Halobacterium sp. DL1]
Length = 210
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 16/155 (10%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
G+DEAG+GPVLG M + P + ADSK L E+R+EL E ++ +V
Sbjct: 3 FGVDEAGKGPVLGSMFAAAVAGDPADLPDGV-----ADSKRLAPERRDELDERIRARCAV 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
G A E+ ++ + ++N ++ + +++V + G L V V DAE++
Sbjct: 58 GVA-------EIPVARIDDPETDMNALTVAAQADALSQVASDG-LAGHVDAGDV-DAERF 108
Query: 136 QAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAK 169
+++ + + AD Y V+ ASIVAK
Sbjct: 109 GRRVADAVTADVDITAEHGADDEYDFVAAASIVAK 143
>gi|406671089|ref|ZP_11078329.1| ribonuclease HIII [Facklamia hominis CCUG 36813]
gi|405581183|gb|EKB55234.1| ribonuclease HIII [Facklamia hominis CCUG 36813]
Length = 316
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 7/159 (4%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++G DE G G G + +Y + QTL L DSK L + K + L ++ D V
Sbjct: 94 LIGSDEVGNGSYFGALTVCAVYLNQTQIQTLKDLGIQDSKNLTDAKIQSL--SRQIQDQV 151
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI--GILLTEVYLDTVGDAE 133
+ + II+P + + N N + I+H+ + + L+ L +D
Sbjct: 152 CFHLTIINPNKYNQLTQNYNANAIKAIAHNYTLNACYQKLSTKDQADLDGALIDQFTPER 211
Query: 134 KYQAKLSQRFPSI---KFVVSKKADSLYPVVSGASIVAK 169
Y L ++ SI K +KKA+SL+ V+ ASI+A+
Sbjct: 212 NYYQHLEKQGQSIYPGKTFFAKKAESLHLSVACASIIAR 250
>gi|358064077|ref|ZP_09150666.1| ribonuclease HII [Clostridium hathewayi WAL-18680]
gi|356697710|gb|EHI59281.1| ribonuclease HII [Clostridium hathewayi WAL-18680]
Length = 212
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+V G + P Q L DSK + E+KRE LF++++ +V
Sbjct: 32 ICGIDEAGRGPLAGPVVAGAVILPKDCQ----ILYLNDSKKVSEKKRELLFDEIR-GKAV 86
Query: 76 GWAVDIIDP 84
+ + ++ P
Sbjct: 87 SYGIGVVGP 95
>gi|448534698|ref|ZP_21621856.1| ribonuclease HII [Halorubrum hochstenium ATCC 700873]
gi|445704309|gb|ELZ56226.1| ribonuclease HII [Halorubrum hochstenium ATCC 700873]
Length = 236
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 23/170 (13%)
Query: 17 MGIDEAGRGPVLGPMVYGC-LYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+G+DEAG+GP LGPMV + P S + DSK + ++RE + L + V
Sbjct: 3 LGVDEAGKGPALGPMVAAAVIAAPSSLPA-----DVDDSKRIAPDRREAMAAALDEDPEV 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V ++P E+ + N + + + L R IG + V D +E+
Sbjct: 58 AVGVARVEPAEIDRPDTDMNTLTVRGQARAVRAALADRPAGIGEPV-RVVADAGDTSEER 116
Query: 136 QAKLSQRF----------------PSIKFVVSKKADSLYPVVSGASIVAK 169
A+ + F P++ + AD+ P+V AS+VAK
Sbjct: 117 FARRLREFVAAGEDGDRAEGGDPVPAVDVTAAHGADADDPLVGAASVVAK 166
>gi|46446292|ref|YP_007657.1| ribonuclease HII [Candidatus Protochlamydia amoebophila UWE25]
gi|81627372|sp|Q6MDG7.1|RNH2_PARUW RecName: Full=Ribonuclease HII; Short=RNase HII
gi|46399933|emb|CAF23382.1| putative ribonuclease HII [Candidatus Protochlamydia amoebophila
UWE25]
Length = 222
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 24/157 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+V C + L DSK L + RE LFE L + +V
Sbjct: 31 IAGIDEAGRGPLAGPVVAAA----CILPKGLLVPQINDSKKLSPKVRERLFERLTTDSAV 86
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ + II E+ +++N I + + ++ + + + V +D +
Sbjct: 87 RYGIGIIGQAEI-------DRVN---IYQATILAMLMAIQQLPVTPDYVLVDGMNLPHP- 135
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSN 172
P +K + K D L ++ ASI+AK +
Sbjct: 136 ------DLPCLKII---KGDQLSQSIAAASIIAKETR 163
>gi|428170387|gb|EKX39312.1| hypothetical protein GUITHDRAFT_143524 [Guillardia theta CCMP2712]
Length = 225
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQ-------QTLATLN-FADSKTLKEEKREELFE 67
+ G+DE GRGP+ GP+V + P Q + L L+ DSK L E +REE+FE
Sbjct: 58 VAGVDEVGRGPLAGPVVAAAVILPREAQGEVGVDGEALEYLDQLDDSKKLSERQREEVFE 117
Query: 68 DLKVNDSVGWAVDIIDPRELSA 89
L + V WAV+ R++ A
Sbjct: 118 KLTQDPRVVWAVEFKSNRDIDA 139
>gi|392426852|ref|YP_006467846.1| ribonuclease HII [Desulfosporosinus acidiphilus SJ4]
gi|391356815|gb|AFM42514.1| ribonuclease HII [Desulfosporosinus acidiphilus SJ4]
Length = 260
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+V P + L LN DSK L E +RE+LF ++ ++
Sbjct: 75 IAGIDEAGRGPLAGPVVAAACILPTRF--NLPGLN--DSKALTESRREKLFTKIQTQ-AI 129
Query: 76 GWAVDIIDPRELSA 89
+A+ +P E+ A
Sbjct: 130 DYAIGSAEPAEIDA 143
>gi|427429623|ref|ZP_18919610.1| Ribonuclease HII [Caenispirillum salinarum AK4]
gi|425879860|gb|EKV28561.1| Ribonuclease HII [Caenispirillum salinarum AK4]
Length = 204
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYC--PCSYQQTLATLNFADSKTLKEEKREELF 66
+WA + GIDEAGRGP+ GP+V + C + LN DSK L KREEL
Sbjct: 7 EWAETGVVCGIDEAGRGPLAGPVVAAAVILDRACVPDTLVDGLN--DSKKLTASKREEL- 63
Query: 67 EDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
L V ++ G AV I ++ A++ N + ++ D A G + R +++ ++
Sbjct: 64 --LTVLETCGAAVIGIGQADV-AEIDTHNILRATHMAMDRACGALGRAVDVALV 114
>gi|18312482|ref|NP_559149.1| ribonuclease HII [Pyrobaculum aerophilum str. IM2]
gi|74564756|sp|Q8ZXL6.1|RNH2_PYRAE RecName: Full=Ribonuclease HII; Short=RNase HII
gi|18159942|gb|AAL63331.1| ribonuclease HII (rnhB) [Pyrobaculum aerophilum str. IM2]
Length = 212
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 19/157 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED-LKVNDS 74
I GIDEAGRGPV+GPMV + + + DSK L RE ++E L+V
Sbjct: 2 IGGIDEAGRGPVIGPMVIAIV---VGESDDMIKIGVRDSKRLSPGAREAVYEKILRVAAC 58
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA-- 132
V + V I+P E+ A +++ +N E+ + + + I + E Y D
Sbjct: 59 VNYVV--IEPAEIDA-YVSRGMLNALELKYTAQL--------INLCPAEYYYVDSPDVNP 107
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
++Y++ L F + K V++ P V+ ASIVAK
Sbjct: 108 KRYESGLV--FATGKRVIALHKGEAVPQVAAASIVAK 142
>gi|322372194|ref|ZP_08046735.1| ribonuclease HII [Haladaptatus paucihalophilus DX253]
gi|320548203|gb|EFW89876.1| ribonuclease HII [Haladaptatus paucihalophilus DX253]
Length = 212
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 31/165 (18%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYC--PCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
+ G+DEAGRGPVLG M + P DSK L E+REEL L+ ++
Sbjct: 1 MFGVDEAGRGPVLGSMFAAAVAIDDPDDLPD-----GIDDSKNLSPERREELAAALRADE 55
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEIS---HDSAIGLITRVLNIGILLTEVYLDTVG 130
+V V E++ ++ + ++N ++ H AI I GI+
Sbjct: 56 AVAVGV-----AEITTTRIDDPETDMNTLTVAAHGEAISRIVSGGERGIV---------- 100
Query: 131 DA-EKYQAKLSQRF-----PSIKFVVSKKADSLYPVVSGASIVAK 169
DA + +++ ++R P I AD + +V ASIVAK
Sbjct: 101 DACDTSESRFARRVAAAVGPEITVEAEHGADETHAIVGAASIVAK 145
>gi|241662957|ref|YP_002981317.1| ribonuclease HII [Ralstonia pickettii 12D]
gi|309782124|ref|ZP_07676854.1| ribonuclease HII [Ralstonia sp. 5_7_47FAA]
gi|404377816|ref|ZP_10982916.1| ribonuclease HII [Ralstonia sp. 5_2_56FAA]
gi|240864984|gb|ACS62645.1| Ribonuclease H [Ralstonia pickettii 12D]
gi|308919190|gb|EFP64857.1| ribonuclease HII [Ralstonia sp. 5_7_47FAA]
gi|348612883|gb|EGY62490.1| ribonuclease HII [Ralstonia sp. 5_2_56FAA]
Length = 232
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 26/154 (16%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGP+ GP+ + + ++ + L ADSK L +KRE L++++ V ++ W
Sbjct: 30 GVDEAGRGPLAGPVTAAAVV--LNPRKPIKGL--ADSKILTAKKREALYDEI-VEKALAW 84
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
V A + ++IN+ + + + V +G L V +D
Sbjct: 85 HV-------AEATVEEIDRINILHATMLAMQRAVHGVAALGTLPDLVQVD---------- 127
Query: 138 KLSQRFPSIKFVVSK--KADSLYPVVSGASIVAK 169
R P + F V K D+L P +S ASI+AK
Sbjct: 128 --GNRCPQVAFAVEAVVKGDALVPAISAASILAK 159
>gi|390937865|ref|YP_006401603.1| RNase HII [Desulfurococcus fermentans DSM 16532]
gi|390190972|gb|AFL66028.1| RNase HII [Desulfurococcus fermentans DSM 16532]
Length = 255
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 80/164 (48%), Gaps = 22/164 (13%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAGRGP +G MV + S ++L ++ DSK L+ KR + +N+ +
Sbjct: 9 IGVDEAGRGPFIGDMVIAGVIGLSSTFESLVSIGLRDSKLLEPLKRL-----IILNNMLS 63
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILL------TEVYLDTVG 130
+DI+ ++ ++ N+N + + G++ + IL +Y+D V
Sbjct: 64 LDIDIV---ATYVSPIHIDRSNMNMLEYTVICGILKYLSYSHILRQHQDAGVRIYIDEV- 119
Query: 131 DAEKYQAKLSQ-----RFPSIKFVVSKKADSLYPVVSGASIVAK 169
+ Y K+ + +++ + +AD+ YP VS AS+VAK
Sbjct: 120 --KGYNGKIGECARGLYRGNVEIFIESRADAKYPAVSAASVVAK 161
>gi|322418210|ref|YP_004197433.1| Ribonuclease H [Geobacter sp. M18]
gi|320124597|gb|ADW12157.1| Ribonuclease H [Geobacter sp. M18]
Length = 228
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+V + P L +N DSK L EEKREELF DL ++V
Sbjct: 28 IAGVDEAGRGPLAGPVVAAAVIIPTGV--LLPGVN--DSKQLTEEKREELF-DLIYREAV 82
Query: 76 GWAVDIID 83
V I D
Sbjct: 83 AVGVGIGD 90
>gi|187928381|ref|YP_001898868.1| ribonuclease HII [Ralstonia pickettii 12J]
gi|238691815|sp|B2UBB5.1|RNH2_RALPJ RecName: Full=Ribonuclease HII; Short=RNase HII
gi|187725271|gb|ACD26436.1| Ribonuclease H [Ralstonia pickettii 12J]
Length = 232
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 26/154 (16%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGP+ GP+ + + ++ + L ADSK L KRE L++++ V ++ W
Sbjct: 30 GVDEAGRGPLAGPVTAAAVV--LNPRKPIKGL--ADSKILTARKREALYDEI-VEKALAW 84
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
V A + ++IN+ + + + V +G L V +D
Sbjct: 85 HV-------AEATVEEIDRINILHATMLAMQRAVQGVAALGTLPDLVQVD---------- 127
Query: 138 KLSQRFPSIKFVVSK--KADSLYPVVSGASIVAK 169
R P + F V K D+L P +S ASI+AK
Sbjct: 128 --GNRCPQVAFAVEAIVKGDALVPAISAASILAK 159
>gi|359406589|ref|ZP_09199266.1| ribonuclease HII [Prevotella stercorea DSM 18206]
gi|357555468|gb|EHJ37117.1| ribonuclease HII [Prevotella stercorea DSM 18206]
Length = 212
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 72/174 (41%), Gaps = 30/174 (17%)
Query: 7 LPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF 66
LP + ++ G DEAGRG + G + + P Y L LN DSK L E+ R L
Sbjct: 11 LPHYYTDLVEAGCDEAGRGCLAGSVYAAAVILPPDYDNAL--LN--DSKKLSEKARRTL- 65
Query: 67 EDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL 126
D V D+V WAV ++ P E+ ++IN +LN L L
Sbjct: 66 RDQIVRDAVAWAVGVVTPEEI-------DRIN---------------ILNASFLAMHRAL 103
Query: 127 DTVGDAEKYQAKLSQRFPSIK---FVVSKKADSLYPVVSGASIVAKRSNFERMD 177
D + + RF + + K D Y ++ ASI+AK E MD
Sbjct: 104 DQLTVRPEAVIVDGNRFTPYRDLPYTTIVKGDGKYQSIAAASILAKTFRDEYMD 157
>gi|327311983|ref|YP_004338880.1| ribonuclease HII [Thermoproteus uzoniensis 768-20]
gi|326948462|gb|AEA13568.1| ribonuclease HII [Thermoproteus uzoniensis 768-20]
Length = 203
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 15/155 (9%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE-DLKVNDS 74
+ GIDEAGRGPV+GPMV + ++ L L DSK L + RE L+ LK +
Sbjct: 3 VAGIDEAGRGPVVGPMVLAIV---AGNEKALRALGVRDSKELSRKARERLYPLILKSAEC 59
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
V + V ++P + + +K+NL E + + R+ + + Y+D+ +
Sbjct: 60 VNYVV--LEPHVID-EWAASHKLNLLEAEEAAK---LMRLCDADVY----YVDSPDPKPE 109
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
++L R + V KA+ + P V+ ASIVAK
Sbjct: 110 RFSELLSRMSGRRVVAMNKAERV-PQVAAASIVAK 143
>gi|292656107|ref|YP_003536004.1| ribonuclease H II [Haloferax volcanii DS2]
gi|291372875|gb|ADE05102.1| ribonuclease H II [Haloferax volcanii DS2]
Length = 215
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 15/165 (9%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+G+DEAG+GPVLGPMV + P + ADSK L E+REEL +L+ D +
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVRGDPDALPD-----GIADSKRLAPERREELAAELRERDDI 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR---VLNIGILLTEVYLDTVGDA 132
V ++P + + N + + +A + V + G + +
Sbjct: 58 SVGVAFVEPETIDDPETDMNLLTVRAQVEAAAEVAVDADELVCDAGDVSESRF------G 111
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
+ + L++ S+ +AD + +V ASIVAK R++
Sbjct: 112 RRVREGLAEAGVSVAVRAQHRADDEHAIVGAASIVAKVERDRRVE 156
>gi|448634381|ref|ZP_21674779.1| ribonuclease HII [Haloarcula vallismortis ATCC 29715]
gi|445749354|gb|EMA00799.1| ribonuclease HII [Haloarcula vallismortis ATCC 29715]
Length = 211
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 15/158 (9%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-DSV 75
G+DEAG+GPVLG M + DSK +K ++RE L E++ + D+V
Sbjct: 3 FGVDEAGKGPVLGSM----FAAAVRAEPAALPDGVGDSKDIKPQRRERLAEEIHESADAV 58
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
G A E+ + ++ ++ ++N ++ ++ ++ V G+ T DT DAE++
Sbjct: 59 GVA-------EIPVERIDDDETDMNTLTVEAQAEALSAVARDGLSGTVDAGDT--DAERF 109
Query: 136 QAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKRSN 172
+++ + + AD P+V ASI+AK +
Sbjct: 110 GRRVAGAVDAEVTVTAEHGADETDPLVGAASIIAKEAR 147
>gi|424779899|ref|ZP_18206785.1| Ribonuclease HIII [Catellicoccus marimammalium M35/04/3]
gi|422843438|gb|EKU27875.1| Ribonuclease HIII [Catellicoccus marimammalium M35/04/3]
Length = 296
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 5/164 (3%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G DE G G GP+V Y L TL ADSKTL +EK +++ LK + +
Sbjct: 83 IGSDEVGNGSYFGPLVVVAAYVTKEDIPWLTTLEVADSKTLTDEKMKKIAPQLK--EKLP 140
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLI-TRVLNIGILLTEVYLDTVGDAEKY 135
+ I+ P++ +A N + + H+ A+ L+ R+ L + +D + Y
Sbjct: 141 YQALIVSPKKYNAIQPRYNAVKMKVALHNQALLLLEKRIEKENQPLDALLIDQFTSEKNY 200
Query: 136 Q--AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
Q K + P ++ K + + V+ ASI+A+ E+++
Sbjct: 201 QQYVKEEKEQPHHPVLMRVKGEQEHLAVAAASIIARTLFLEQLE 244
>gi|223986426|ref|ZP_03636431.1| hypothetical protein HOLDEFILI_03743 [Holdemania filiformis DSM
12042]
gi|223961622|gb|EEF66129.1| hypothetical protein HOLDEFILI_03743 [Holdemania filiformis DSM
12042]
Length = 207
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W ++GIDEAGRGP+ GP+V Y A DSK L E+KRE+LF L
Sbjct: 14 WDQGKHVVGIDEAGRGPIAGPLVVAGAVFDIGY----ANSEIYDSKALSEKKREKLF-SL 68
Query: 70 KVNDSVGWAVDIIDPREL 87
+ ++ + + I+ P E+
Sbjct: 69 ILREARCYKIKIVTPEEI 86
>gi|448440394|ref|ZP_21588557.1| ribonuclease HII [Halorubrum saccharovorum DSM 1137]
gi|445690290|gb|ELZ42505.1| ribonuclease HII [Halorubrum saccharovorum DSM 1137]
Length = 234
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 27/178 (15%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAG+GPVLGPMV + S + A DSK + +RE + ++ V
Sbjct: 3 LGVDEAGKGPVLGPMVAAAVLADPSDLPSDAD----DSKRIAPSRRESIDAAIREAADVA 58
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLT-EVYLDTVGDA-EK 134
V ++P E +++ ++N ++ + L+ G+ + + V DA +
Sbjct: 59 VGVAFVEPAE-----IDRPDTDMNTLTVRGQARAVRAALDGGVAVGLNGPVRVVADAGDT 113
Query: 135 YQAKLSQR----------------FPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
+A+ ++R P++ + AD PVV AS+VAK + RM
Sbjct: 114 SEARFARRLGEFIADRDTNAGDPGLPTVDVSAAHGADEDDPVVGAASVVAKVARDRRM 171
>gi|71082816|ref|YP_265535.1| ribonuclease HII (RNase HII) [Candidatus Pelagibacter ubique
HTCC1062]
gi|97189139|sp|Q4FPF7.1|RNH2_PELUB RecName: Full=Ribonuclease HII; Short=RNase HII
gi|71061929|gb|AAZ20932.1| Ribonuclease HII (RNase HII) [Candidatus Pelagibacter ubique
HTCC1062]
Length = 186
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 29/159 (18%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
+ G+DE GRG ++GP+ + S + L DSKTL ++KREEL + +K N
Sbjct: 3 ILAGVDEVGRGSLIGPVYAAAVILNNSIDKKL----LKDSKTLTKDKREELEKYIKKNSI 58
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD--TVGDA 132
WA+ +E+ KIN I H S + + +L + I + V +D + D
Sbjct: 59 --WAIGQASTKEIE-------KIN---ILHASLLAMKRAILKLKIKPSLVLIDGNKLPDL 106
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRS 171
+ Y+ +++V+ K D P +S ASI+AK S
Sbjct: 107 KNYK---------LEYVI--KGDQKIPSISAASIIAKVS 134
>gi|386014752|ref|YP_005933029.1| ribonuclease HII RnhB [Pantoea ananatis AJ13355]
gi|327392811|dbj|BAK10233.1| ribonuclease HII RnhB [Pantoea ananatis AJ13355]
Length = 231
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 29/164 (17%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI G+DE GRGP++G +V + ADSK L E++R LF+ +K +
Sbjct: 34 CIAGVDEVGRGPLVGAVVTAAVI----LDPANPVPGLADSKKLSEKRRLALFDQIK-EKA 88
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ NLN I H + + + V + I V +D
Sbjct: 89 LAWSLGRAEPDEID---------NLN-ILHATMLAMQRAVAGLSITPDFVLID------- 131
Query: 135 YQAKLSQRFPSIKF--VVSKKADSLYPVVSGASIVAKRSNFERM 176
R P++ + K DSL +S ASI+AK + M
Sbjct: 132 -----GNRCPALPMPSLAVVKGDSLVAEISAASIIAKVTRDREM 170
>gi|295098996|emb|CBK88085.1| RNase HII [Eubacterium cylindroides T2-87]
Length = 202
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 60/103 (58%), Gaps = 6/103 (5%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W + ++GIDEAGRGP+ GP+V + C +++ DSK L E+KRE LF L
Sbjct: 11 WNLHQDVLGIDEAGRGPIAGPLVVAGV-C---FEKGFTNEMIDDSKKLTEKKREALFS-L 65
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNK-NKINLNEISHDSAIGLI 111
N+++ + + +I+ + + K + + + + EI+H++ + ++
Sbjct: 66 ITNEALWYQILVIEEKIIDKKNIYRTTQEAMLEIAHNAPVDIV 108
>gi|374340872|ref|YP_005097608.1| ribonuclease HII [Marinitoga piezophila KA3]
gi|372102406|gb|AEX86310.1| ribonuclease HII [Marinitoga piezophila KA3]
Length = 220
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+G+DEAGRGP+ GP+V + Q + DSK L E+KREE++E L N
Sbjct: 12 IIGVDEAGRGPLAGPVVAAAIEVENENQLKILEEISNDSKKLSEKKREEIYEILIKN--F 69
Query: 76 GWAVDIIDPREL 87
++++I P E+
Sbjct: 70 NYSIEIATPEEI 81
>gi|229071335|ref|ZP_04204558.1| Ribonuclease [Bacillus cereus F65185]
gi|229180113|ref|ZP_04307457.1| Ribonuclease [Bacillus cereus 172560W]
gi|228603322|gb|EEK60799.1| Ribonuclease [Bacillus cereus 172560W]
gi|228711789|gb|EEL63741.1| Ribonuclease [Bacillus cereus F65185]
Length = 254
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 71 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 125
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + + IN+ + + + ++ V N+ + +D +
Sbjct: 126 AIGVGIVSPQVI-------DDINIYQATKQA---MLDAVANLSCTPQHLLIDAM------ 169
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL P + K D+ +S ASI+AK
Sbjct: 170 --KLPTPIPQTSII---KGDAKSVSISAASIIAK 198
>gi|378768458|ref|YP_005196931.1| ribonuclease HII RnhB [Pantoea ananatis LMG 5342]
gi|386080579|ref|YP_005994104.1| ribonuclease HII RnhB [Pantoea ananatis PA13]
gi|354989760|gb|AER33884.1| ribonuclease HII RnhB [Pantoea ananatis PA13]
gi|365187944|emb|CCF10894.1| ribonuclease HII RnhB [Pantoea ananatis LMG 5342]
Length = 208
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 31/165 (18%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
CI G+DE GRGP++G +V + P + L ADSK L E++R LF+ +K
Sbjct: 11 CIAGVDEVGRGPLVGAVVTAAVILDPANPVPGL-----ADSKKLSEKRRLALFDQIK-EK 64
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
++ W++ +P E+ NLN I H + + + V + I V +D
Sbjct: 65 ALAWSLGRAEPDEID---------NLN-ILHATMLAMQRAVAGLSITPDFVLID------ 108
Query: 134 KYQAKLSQRFPSIKF--VVSKKADSLYPVVSGASIVAKRSNFERM 176
R P++ + K DSL +S ASI+AK + M
Sbjct: 109 ------GNRCPALPMPSLAVVKGDSLVAEISAASIIAKVTRDREM 147
>gi|291616360|ref|YP_003519102.1| RnhB [Pantoea ananatis LMG 20103]
gi|291151390|gb|ADD75974.1| RnhB [Pantoea ananatis LMG 20103]
Length = 215
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 31/165 (18%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
CI G+DE GRGP++G +V + P + L ADSK L E++R LF+ +K
Sbjct: 18 CIAGVDEVGRGPLVGAVVTAAVILDPANPVPGL-----ADSKKLSEKRRLALFDQIK-EK 71
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
++ W++ +P E+ NLN I H + + + V + I V +D
Sbjct: 72 ALAWSLGRAEPDEID---------NLN-ILHATMLAMQRAVAGLSITPDFVLID------ 115
Query: 134 KYQAKLSQRFPSIKF--VVSKKADSLYPVVSGASIVAKRSNFERM 176
R P++ + K DSL +S ASI+AK + M
Sbjct: 116 ------GNRCPALPMPSLAVVKGDSLVAEISAASIIAKVTRDREM 154
>gi|433422650|ref|ZP_20406055.1| ribonuclease HII [Haloferax sp. BAB2207]
gi|432198565|gb|ELK54835.1| ribonuclease HII [Haloferax sp. BAB2207]
Length = 215
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 15/165 (9%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+G+DEAG+GPVLGPMV + P + ADSK L E+REEL +L+ D +
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVRADPDALPD-----GIADSKRLAPERREELAAELRECDDI 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR---VLNIGILLTEVYLDTVGDA 132
V ++P + + N + + +A V + G + +
Sbjct: 58 SVGVAFVEPETIDDPETDMNLLTVRAQVEAAADVAADADELVCDAGDVSESRF------G 111
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
+ + L++ S+ +AD + +V ASIVAK R++
Sbjct: 112 RRVREGLAEAGVSVAVRAQHRADDEHAIVGAASIVAKVERDRRVE 156
>gi|30021925|ref|NP_833556.1| ribonuclease HII [Bacillus cereus ATCC 14579]
gi|39932341|sp|Q819W9.1|RNH2_BACCR RecName: Full=Ribonuclease HII; Short=RNase HII
gi|29897481|gb|AAP10757.1| Ribonuclease HII [Bacillus cereus ATCC 14579]
Length = 257
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + + IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DDINIYQATKQA---MLDAVANLSCTPQHLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL P + K D+ +S ASI+AK
Sbjct: 173 --KLPTPIPQTSII---KGDAKSVSISAASIIAK 201
>gi|194335200|ref|YP_002016994.1| ribonuclease HII [Pelodictyon phaeoclathratiforme BU-1]
gi|238693361|sp|B4SAK8.1|RNH2_PELPB RecName: Full=Ribonuclease HII; Short=RNase HII
gi|194307677|gb|ACF42377.1| Ribonuclease H [Pelodictyon phaeoclathratiforme BU-1]
Length = 206
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATL-NFADSKTLKE 59
M ++ P W + + GIDEAGRGP+ GP+V + P ++ L DSK L
Sbjct: 1 MITDYEWPLWQTTALVCGIDEAGRGPLAGPVVAAAVIFPRWFRPVGTILERVNDSKKLSA 60
Query: 60 EKREELFEDLKVNDSVGWAVDIIDPRE------LSAKMLNKNK 96
+RE L ++ N + WAV +DP L A ML N+
Sbjct: 61 AERELLAPAIR-NAAAFWAVAEVDPETIDQINILQATMLAMNQ 102
>gi|257867805|ref|ZP_05647458.1| ribonuclease HII [Enterococcus casseliflavus EC30]
gi|257874132|ref|ZP_05653785.1| ribonuclease HII [Enterococcus casseliflavus EC10]
gi|257876697|ref|ZP_05656350.1| ribonuclease HII [Enterococcus casseliflavus EC20]
gi|257801888|gb|EEV30791.1| ribonuclease HII [Enterococcus casseliflavus EC30]
gi|257808296|gb|EEV37118.1| ribonuclease HII [Enterococcus casseliflavus EC10]
gi|257810863|gb|EEV39683.1| ribonuclease HII [Enterococcus casseliflavus EC20]
Length = 254
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 12/88 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP+ GP+V + P Q L DSK L +KREELF +++ N +V
Sbjct: 73 IAGLDEVGRGPLAGPVVSAAVILPKECQ----ILGLNDSKQLSAKKREELFIEIQ-NKAV 127
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEIS 103
+ ++ P E+ ++IN+ + S
Sbjct: 128 AVGIGVVSPEEI-------DRINIYQAS 148
>gi|227893503|ref|ZP_04011308.1| ribonuclease HII [Lactobacillus ultunensis DSM 16047]
gi|227864673|gb|EEJ72094.1| ribonuclease HII [Lactobacillus ultunensis DSM 16047]
Length = 250
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 30/170 (17%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W N C+ G+DE GRGP+ GP+V + Q L+ DSK L E+R +L+ +
Sbjct: 62 WQKNQCVGGVDEVGRGPLAGPVVTAAVII----DQDFDLLDVNDSKKLSPERRLKLYPKI 117
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI--GILLTEVYLD 127
+ ++V + + P + ++IN+ E A+ R LNI LL + +D
Sbjct: 118 -LEEAVSVGIGVKSPAVI-------DQINIYEADR-QAMAQAVRALNIKPDALLVDA-MD 167
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
D P +K + K D+ ++ ASIVAK + MD
Sbjct: 168 VSVD-----------LPQVKLI---KGDAKSNSIAAASIVAKVFRDKLMD 203
>gi|448397461|ref|ZP_21569494.1| ribonuclease HII [Haloterrigena limicola JCM 13563]
gi|445672560|gb|ELZ25131.1| ribonuclease HII [Haloterrigena limicola JCM 13563]
Length = 223
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 9/158 (5%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLN-FADSKTLKEEKREELFEDLKVNDSV 75
G+DEAG+GP LG M +Y + T + DSK L E+REEL L+ +D +
Sbjct: 3 FGVDEAGKGPALGSMFAAAVY----LEDTDGLPDGIRDSKRLTSERREELAATLRDDDRI 58
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISH--DSAIGLITRVLNIGILLTEVYLDTVGDAE 133
V I P + + N + + + + A+ + R + ++ + DAE
Sbjct: 59 AIGVAEITPARIDDPQTDMNSLAVTAHAEAIEDAVADLERSEDSSEPVSGLCDACDTDAE 118
Query: 134 KYQAKLSQRFPSIKFVVSKK--ADSLYPVVSGASIVAK 169
++ ++S + V + AD P+V ASI+AK
Sbjct: 119 RFARRVSDTCSLERLAVDARHGADDDSPLVGAASIIAK 156
>gi|224541328|ref|ZP_03681867.1| hypothetical protein CATMIT_00488 [Catenibacterium mitsuokai DSM
15897]
gi|224525765|gb|EEF94870.1| ribonuclease HII [Catenibacterium mitsuokai DSM 15897]
Length = 211
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
+ A I+G+DEAGRGP+ GP+V G + P + DSK L E+KRE L+ D
Sbjct: 14 RAAGYSRILGVDEAGRGPMAGPLVVGGVIFPEDFYDE----RINDSKKLTEKKREALY-D 68
Query: 69 LKVNDSVGWAVDIIDPREL 87
L + +++ + ++++ E+
Sbjct: 69 LIIENALAYQIEVLSVEEV 87
>gi|423412358|ref|ZP_17389478.1| ribonuclease HII [Bacillus cereus BAG3O-2]
gi|423431857|ref|ZP_17408861.1| ribonuclease HII [Bacillus cereus BAG4O-1]
gi|401104426|gb|EJQ12403.1| ribonuclease HII [Bacillus cereus BAG3O-2]
gi|401116613|gb|EJQ24451.1| ribonuclease HII [Bacillus cereus BAG4O-1]
Length = 257
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + + IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DDINIYQATKQA---MLDAVANLSCTPQHLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL P + K D+ +S ASI+AK
Sbjct: 173 --KLPTPIPQTSII---KGDAKSVSISAASIIAK 201
>gi|319649582|ref|ZP_08003738.1| hypothetical protein HMPREF1013_00342 [Bacillus sp. 2_A_57_CT2]
gi|317398744|gb|EFV79426.1| hypothetical protein HMPREF1013_00342 [Bacillus sp. 2_A_57_CT2]
Length = 259
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 12/96 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + L L+ DSK + E KREE E +K +
Sbjct: 74 IAGIDEVGRGPLAGPVVAAAVILPEDF--FLPGLD--DSKKVPESKREEFSEIIKAK-AA 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLI 111
++V IIDP E+ ++IN+ E + + + I
Sbjct: 129 AFSVGIIDPEEI-------DRINIFEATKKAMLSAI 157
>gi|228954113|ref|ZP_04116142.1| Ribonuclease [Bacillus thuringiensis serovar kurstaki str. T03a001]
gi|229081092|ref|ZP_04213602.1| Ribonuclease [Bacillus cereus Rock4-2]
gi|365159386|ref|ZP_09355567.1| ribonuclease HII [Bacillus sp. 7_6_55CFAA_CT2]
gi|423425973|ref|ZP_17403004.1| ribonuclease HII [Bacillus cereus BAG3X2-2]
gi|423437292|ref|ZP_17414273.1| ribonuclease HII [Bacillus cereus BAG4X12-1]
gi|423503486|ref|ZP_17480078.1| ribonuclease HII [Bacillus cereus HD73]
gi|449090778|ref|YP_007423219.1| Ribonuclease [Bacillus thuringiensis serovar kurstaki str. HD73]
gi|228702136|gb|EEL54612.1| Ribonuclease [Bacillus cereus Rock4-2]
gi|228805679|gb|EEM52269.1| Ribonuclease [Bacillus thuringiensis serovar kurstaki str. T03a001]
gi|363625384|gb|EHL76425.1| ribonuclease HII [Bacillus sp. 7_6_55CFAA_CT2]
gi|401110720|gb|EJQ18619.1| ribonuclease HII [Bacillus cereus BAG3X2-2]
gi|401120447|gb|EJQ28243.1| ribonuclease HII [Bacillus cereus BAG4X12-1]
gi|402458840|gb|EJV90580.1| ribonuclease HII [Bacillus cereus HD73]
gi|449024535|gb|AGE79698.1| Ribonuclease [Bacillus thuringiensis serovar kurstaki str. HD73]
Length = 257
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + + IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DDINIYQATKQA---MLDAVANLSCTPQHLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL P + K D+ +S ASI+AK
Sbjct: 173 --KLPTPIPQTSII---KGDAKSVSISAASIIAK 201
>gi|119355888|ref|YP_910532.1| ribonuclease HII [Chlorobium phaeobacteroides DSM 266]
gi|166225181|sp|A1BCI1.1|RNH2_CHLPD RecName: Full=Ribonuclease HII; Short=RNase HII
gi|119353237|gb|ABL64108.1| Ribonuclease H [Chlorobium phaeobacteroides DSM 266]
Length = 205
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLN-FADSKTLKEEKREELFED 68
W + I GIDEAGRGP+ GP+V + P ++ A L+ DSK L RE+L
Sbjct: 10 WPTLSLISGIDEAGRGPLAGPVVAAAVIFPRWFRPRHAGLDKLDDSKKLSPNLREQLAPT 69
Query: 69 LKVNDSVGWAVDIIDP 84
+K + WAV +I+P
Sbjct: 70 IKTFAAF-WAVAVIEP 84
>gi|448738065|ref|ZP_21720096.1| ribonuclease HII [Halococcus thailandensis JCM 13552]
gi|445802649|gb|EMA52953.1| ribonuclease HII [Halococcus thailandensis JCM 13552]
Length = 208
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGPVL G L+ C T DSK L +RE L +++ ++ V
Sbjct: 1 MFGVDEAGRGPVL-----GSLFVACVSADTALPDGIDDSKRLTPARREALAAEIRADERV 55
Query: 76 GWAVDIIDPRELSAKMLNKNKIN-LNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
AV E++A ++ ++N L + AI T + G++ DT DA +
Sbjct: 56 TIAV-----SEITASEIDDGRLNALTVAAMADAIDRATATGDSGVVDA---CDT--DAAR 105
Query: 135 YQAKL-SQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
+ ++ ++ ++ AD + V ASIVAK + E +
Sbjct: 106 FGRRVRAETTTDVELAAEHGADESHDHVGAASIVAKVARDEHV 148
>gi|52424478|ref|YP_087615.1| ribonuclease HII [Mannheimia succiniciproducens MBEL55E]
gi|81387520|sp|Q65VI0.1|RNH2_MANSM RecName: Full=Ribonuclease HII; Short=RNase HII
gi|52306530|gb|AAU37030.1| RnhB protein [Mannheimia succiniciproducens MBEL55E]
Length = 198
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 29/166 (17%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I G+DE GRGP++G +V + + DSK L E+KRE+L E++K +
Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVILDPNN----PIDGLTDSKKLSEKKREKLAEEIK-QKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ WA+ +P E+ A LN I + + + + N+ I V +D
Sbjct: 67 LAWALGRAEPEEIDA--LN--------ILQATMLAMQRAIKNLKIQPHFVLID------- 109
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKRSNFERMDI 178
R P + K DSL +S ASI+AK S M++
Sbjct: 110 -----GNRIPQLAIPAQAVVKGDSLVAEISAASIIAKVSRDHEMEV 150
>gi|218233890|ref|YP_002368638.1| ribonuclease HII [Bacillus cereus B4264]
gi|226736814|sp|B7HDW0.1|RNH2_BACC4 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|218161847|gb|ACK61839.1| ribonuclease HII [Bacillus cereus B4264]
Length = 257
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + + IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DDINIYQATKQA---MLDAVANLSCTPQHLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL P + K D+ +S ASI+AK
Sbjct: 173 --KLPTPIPQTSII---KGDAKSVSISAASIIAK 201
>gi|392531087|ref|ZP_10278224.1| ribonuclease HII [Carnobacterium maltaromaticum ATCC 35586]
Length = 261
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 27/161 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + L DSK L E KR+ELF+ +K + ++
Sbjct: 75 IAGIDEVGRGPLAGPVVAAAVILPHDFH----VLEINDSKQLSESKRDELFDKIK-DSAL 129
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ I D + +++N+ E + + +I V N+ I + +D +
Sbjct: 130 AIGIGIKDEGII-------DQVNIYEATK---LAMIEAVENLTIDPEHLLIDAMA----- 174
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
L P K + K D+ ++ ASI+AK + +RM
Sbjct: 175 ---LDLPIPQSKII---KGDTKSLSIAAASIIAKVTR-DRM 208
>gi|416050597|ref|ZP_11577006.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
gi|347993944|gb|EGY35268.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
Length = 199
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 30/165 (18%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I G+DE GRGP++G +V + + ADSKTL E+KR L E++K +
Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVILDPQH----PVEGLADSKTLSEKKRLLLAEEIK-QKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ WA+ +P N+I+ I H S + + + ++ I V +D
Sbjct: 67 LAWALGRAEP----------NEIDELNILHASMLAMERAIKHLKIQPHFVLVD------- 109
Query: 135 YQAKLSQRFPSIKFVVSK---KADSLYPVVSGASIVAKRSNFERM 176
R P + ++ K D+L P +S ASI+AK + + M
Sbjct: 110 -----GNRIPPNLMIPAQAVVKGDALVPEISAASILAKVARDQEM 149
>gi|331091010|ref|ZP_08339852.1| hypothetical protein HMPREF9477_00495 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330405232|gb|EGG84768.1| hypothetical protein HMPREF9477_00495 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 252
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V G + P + + LN DSK L E+KREEL+ D+ + +V
Sbjct: 72 ICGIDEVGRGPLAGPVVAGAVILPKD--EMILYLN--DSKKLSEKKREELY-DIIMERAV 126
Query: 76 GWAVDIIDP 84
+ I+ P
Sbjct: 127 AAGIGIVSP 135
>gi|381210005|ref|ZP_09917076.1| ribonuclease H [Lentibacillus sp. Grbi]
Length = 256
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+V + P ++ L DSK L E REE F +K N +V
Sbjct: 73 IAGMDEAGRGPLAGPVVAAAVILPRDFK----LLGLNDSKQLNETTREEYFTIIK-NAAV 127
Query: 76 GWAVDIID 83
+ + IID
Sbjct: 128 SYGIAIID 135
>gi|325570947|ref|ZP_08146566.1| ribonuclease HII [Enterococcus casseliflavus ATCC 12755]
gi|325156273|gb|EGC68457.1| ribonuclease HII [Enterococcus casseliflavus ATCC 12755]
Length = 254
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 12/88 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP+ GP+V + P Q L DSK L +KREELF +++ N +V
Sbjct: 73 IAGLDEVGRGPLAGPVVSAAVILPKECQ----ILGLNDSKQLSAKKREELFIEIQ-NKAV 127
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEIS 103
+ ++ P E+ ++IN+ + S
Sbjct: 128 AVGIGVVSPEEI-------DRINIYQAS 148
>gi|423585754|ref|ZP_17561841.1| ribonuclease HII [Bacillus cereus VD045]
gi|423628930|ref|ZP_17604679.1| ribonuclease HII [Bacillus cereus VD154]
gi|423641082|ref|ZP_17616700.1| ribonuclease HII [Bacillus cereus VD166]
gi|423649700|ref|ZP_17625270.1| ribonuclease HII [Bacillus cereus VD169]
gi|423656696|ref|ZP_17631995.1| ribonuclease HII [Bacillus cereus VD200]
gi|401233100|gb|EJR39596.1| ribonuclease HII [Bacillus cereus VD045]
gi|401268475|gb|EJR74523.1| ribonuclease HII [Bacillus cereus VD154]
gi|401280143|gb|EJR86065.1| ribonuclease HII [Bacillus cereus VD166]
gi|401282980|gb|EJR88877.1| ribonuclease HII [Bacillus cereus VD169]
gi|401290437|gb|EJR96131.1| ribonuclease HII [Bacillus cereus VD200]
Length = 257
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + + IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DDINIYQATKQA---MLDAVANLSCTPQHLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL P + K D+ +S ASI+AK
Sbjct: 173 --KLPTPIPQTSII---KGDAKSVSISAASIIAK 201
>gi|423582047|ref|ZP_17558158.1| ribonuclease HII [Bacillus cereus VD014]
gi|423635392|ref|ZP_17611045.1| ribonuclease HII [Bacillus cereus VD156]
gi|401212926|gb|EJR19667.1| ribonuclease HII [Bacillus cereus VD014]
gi|401278143|gb|EJR84079.1| ribonuclease HII [Bacillus cereus VD156]
Length = 257
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVILPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + + IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DDINIYQATKQA---MLDAVANLSCTPQHLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL P + K D+ +S ASI+AK
Sbjct: 173 --KLPTPIPQTSII---KGDAKSVSISAASIIAK 201
>gi|414083722|ref|YP_006992430.1| ribonuclease HII family protein [Carnobacterium maltaromaticum
LMA28]
gi|412997306|emb|CCO11115.1| ribonuclease HII family protein [Carnobacterium maltaromaticum
LMA28]
Length = 261
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
I GIDE GRGP+ GP+V + P + L DSK L E KR+ELF+ +K
Sbjct: 75 IAGIDEVGRGPLAGPVVAAAVILPHDFH----VLEINDSKQLSESKRDELFDKIK 125
>gi|311068127|ref|YP_003973050.1| ribonuclease HII [Bacillus atrophaeus 1942]
gi|419823893|ref|ZP_14347426.1| ribonuclease HII [Bacillus atrophaeus C89]
gi|310868644|gb|ADP32119.1| ribonuclease HII [Bacillus atrophaeus 1942]
gi|388471930|gb|EIM08720.1| ribonuclease HII [Bacillus atrophaeus C89]
Length = 255
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + L DSK L E+KREE +E + +N+++
Sbjct: 74 IAGIDEVGRGPLAGPVVASAVILPAECE----ILGLTDSKKLSEKKREEYYERI-MNEAL 128
Query: 76 GWAVDIID 83
G + II+
Sbjct: 129 GVGIGIIE 136
>gi|229129113|ref|ZP_04258086.1| Ribonuclease [Bacillus cereus BDRD-Cer4]
gi|228654350|gb|EEL10215.1| Ribonuclease [Bacillus cereus BDRD-Cer4]
Length = 254
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 71 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 125
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + + IN+ + + + ++ V N+ + +D +
Sbjct: 126 AIGVGIVSPQVI-------DDINIYQATKQA---MLDAVANLSCTPQHLLIDAM------ 169
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL P + K D+ +S ASI+AK
Sbjct: 170 --KLPTPIPQTSII---KGDAKSVSISAASIIAK 198
>gi|420263141|ref|ZP_14765780.1| ribonuclease HII [Enterococcus sp. C1]
gi|394769775|gb|EJF49609.1| ribonuclease HII [Enterococcus sp. C1]
Length = 254
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 12/88 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP+ GP+V + P Q L DSK L +KREELF +++ N +V
Sbjct: 73 IAGLDEVGRGPLAGPVVSAAVILPKECQ----ILGLNDSKQLSAKKREELFIEIQ-NKAV 127
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEIS 103
+ ++ P E+ ++IN+ + S
Sbjct: 128 AVGIGVVSPEEI-------DRINIYQAS 148
>gi|228960053|ref|ZP_04121717.1| Ribonuclease [Bacillus thuringiensis serovar pakistani str. T13001]
gi|229047524|ref|ZP_04193114.1| Ribonuclease [Bacillus cereus AH676]
gi|229111308|ref|ZP_04240861.1| Ribonuclease [Bacillus cereus Rock1-15]
gi|229146408|ref|ZP_04274779.1| Ribonuclease [Bacillus cereus BDRD-ST24]
gi|229152036|ref|ZP_04280231.1| Ribonuclease [Bacillus cereus m1550]
gi|228631385|gb|EEK88019.1| Ribonuclease [Bacillus cereus m1550]
gi|228637041|gb|EEK93500.1| Ribonuclease [Bacillus cereus BDRD-ST24]
gi|228672084|gb|EEL27375.1| Ribonuclease [Bacillus cereus Rock1-15]
gi|228723771|gb|EEL75126.1| Ribonuclease [Bacillus cereus AH676]
gi|228799569|gb|EEM46522.1| Ribonuclease [Bacillus thuringiensis serovar pakistani str. T13001]
Length = 254
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 71 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 125
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + + IN+ + + + ++ V N+ + +D +
Sbjct: 126 AIGVGIVSPQVI-------DDINIYQATKQA---MLDAVANLSCTPQHLLIDAM------ 169
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL P + K D+ +S ASI+AK
Sbjct: 170 --KLPTPIPQTSII---KGDAKSVSISAASIIAK 198
>gi|228922591|ref|ZP_04085891.1| Ribonuclease [Bacillus thuringiensis serovar huazhongensis BGSC
4BD1]
gi|228837020|gb|EEM82361.1| Ribonuclease [Bacillus thuringiensis serovar huazhongensis BGSC
4BD1]
Length = 254
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 71 IAGIDEVGRGPLAGPVVTAAVILPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 125
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + + IN+ + + + ++ V N+ + +D +
Sbjct: 126 AIGVGIVSPQVI-------DDINIYQATKQA---MLDAVANLSCTPQHLLIDAM------ 169
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL P + K D+ +S ASI+AK
Sbjct: 170 --KLPTPIPQTSII---KGDAKSVSISAASIIAK 198
>gi|448668246|ref|ZP_21686377.1| ribonuclease HII [Haloarcula amylolytica JCM 13557]
gi|445768328|gb|EMA19413.1| ribonuclease HII [Haloarcula amylolytica JCM 13557]
Length = 211
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 15/162 (9%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-DSV 75
G+DEAG+GPVLG M + + DSK ++ E+RE L +++ + D+V
Sbjct: 3 FGVDEAGKGPVLGSMFAAAVRA----DPEVLPDGVGDSKGIRPERRERLAGEIRESADAV 58
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
G A E+ + ++ + ++N ++ D+ ++ V G+ T DT DA ++
Sbjct: 59 GVA-------EIPVERIDADGTDMNTLTVDAQAEALSVVARDGLPGTVDAGDT--DAARF 109
Query: 136 QAKLSQRF-PSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
+++ + AD P+V ASI+AK + E +
Sbjct: 110 GRRVADAVNADVTVTAEHGADETDPLVGAASIIAKVARDEHV 151
>gi|227326550|ref|ZP_03830574.1| ribonuclease HII [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 198
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 29/164 (17%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI G+DE GRGP++G +V + T + ADSK L E++R L++++K +
Sbjct: 12 CIAGVDEVGRGPLVGAVVTAAVIL----DPTRPIVGLADSKQLSEKRRLSLYDEIK-EKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ +++N I H + + + V + I+ V +D
Sbjct: 67 LAWSLGRAEPEEI-------DQLN---ILHATMLAMQRAVAGLAIVPDFVLID------- 109
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKRSNFERM 176
R P++ K DS +S ASI+AK + M
Sbjct: 110 -----GNRCPALPMSAQAVVKGDSRVAEISAASIMAKVTRDREM 148
>gi|126178454|ref|YP_001046419.1| ribonuclease HII [Methanoculleus marisnigri JR1]
gi|125861248|gb|ABN56437.1| RNase HII [Methanoculleus marisnigri JR1]
Length = 205
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 24/158 (15%)
Query: 19 IDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWA 78
+DEAG+G VLGPMV + C + LATL DSK L+ ++RE L+E L
Sbjct: 1 MDEAGKGSVLGPMVVAAV--GCREIEDLATLPIRDSKVLRPKQREALYEILF-------- 50
Query: 79 VDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLT----EVYLDTVG-DAE 133
R+ S ++ + +++ ++ L+ L++ Y+D +AE
Sbjct: 51 ------RDFSIAIVTIDAAGIDDARSRMSMNTCVAELHAEALMSLQPEYAYVDACDVNAE 104
Query: 134 KYQAKLSQ--RFPSIKFVVSKKADSLYPVVSGASIVAK 169
+Y +++ +P + V AD+ + VV AS+VAK
Sbjct: 105 RYGRTVAELLDYPC-EIVAEHHADARHKVVGAASVVAK 141
>gi|344171454|emb|CCA84066.1| ribonuclease HII (RNase HII) [Ralstonia syzygii R24]
Length = 236
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 26/154 (16%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGP+ GP+ + + ++ + L ADSK L +KRE L+ ++ V ++ W
Sbjct: 31 GVDEAGRGPLAGPVTAAAVV--LNPRKPIKGL--ADSKVLTAKKREALYGEI-VEKALAW 85
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
V A + ++IN+ + + + V G+L V +D
Sbjct: 86 HV-------AEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVD---------- 128
Query: 138 KLSQRFPSIKFVVSK--KADSLYPVVSGASIVAK 169
R P + F V K D+L P +S ASI+AK
Sbjct: 129 --GNRCPQVAFAVEAIVKGDALVPAISAASILAK 160
>gi|54026116|ref|YP_120358.1| ribonuclease HII [Nocardia farcinica IFM 10152]
gi|81373729|sp|Q5YS47.1|RNH2_NOCFA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|54017624|dbj|BAD58994.1| putative RNase HII [Nocardia farcinica IFM 10152]
Length = 251
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 4 EAALPKWASNPCIMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKR 62
EAAL + P + G+DEAGRGP GP+V CL P +Y + LA L+ DSK L E R
Sbjct: 23 EAALIRGGLGP-VAGVDEAGRGPCAGPLVVAACLLAPKAYDR-LAGLD--DSKKLTEAAR 78
Query: 63 EELFEDLKVNDSVGWAVDIIDPRELSA 89
EEL+ + ++ W V +I E+ A
Sbjct: 79 EELYPVI-TRLALAWEVVVIPAWEIDA 104
>gi|220928167|ref|YP_002505076.1| ribonuclease HII [Clostridium cellulolyticum H10]
gi|254807971|sp|B8I7T9.1|RNH2_CLOCE RecName: Full=Ribonuclease HII; Short=RNase HII
gi|219998495|gb|ACL75096.1| ribonuclease HII/HIII [Clostridium cellulolyticum H10]
Length = 255
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 27/155 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+V + P T+ +N DSK L E +RE+LF ++K ++
Sbjct: 74 IAGVDEAGRGPLAGPVVAAAVVLPNGL--TIEGIN--DSKKLSESQREKLFSEIK-EKAL 128
Query: 76 GWAVDIIDPREL-SAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ + +ID + + +LN K + E A+ + + ILL V LD +
Sbjct: 129 SYGISVIDEKYIDEVNILNATKRAMTE-----ALSQLEPTADC-ILLDAVRLDNIS---- 178
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+++ P I K DSL ++ ASI+AK
Sbjct: 179 -----TKQVPII------KGDSLSLSIAAASILAK 202
>gi|197119787|ref|YP_002140214.1| ribonuclease HII [Geobacter bemidjiensis Bem]
gi|254807977|sp|B5EBC6.1|RNH2_GEOBB RecName: Full=Ribonuclease HII; Short=RNase HII
gi|197089147|gb|ACH40418.1| ribonuclease HII [Geobacter bemidjiensis Bem]
Length = 230
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 81/163 (49%), Gaps = 30/163 (18%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+V + P L +N DSK L EEKREELF D+ +++
Sbjct: 30 IAGIDEAGRGPLAGPVVAAAVMLPAGL--LLPGVN--DSKQLTEEKREELF-DVIHREAL 84
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI--GILLTEVYLDTVGDAE 133
V I D + + IN+ + + SA+ R L+I G LL +D + +
Sbjct: 85 AVGVGIGDHALV-------DSINILQATL-SAMRDAVRALSITPGFLL----IDGISN-- 130
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
+ QR KK DSL ++ ASI+AK + +RM
Sbjct: 131 -IPMNIPQR-------TVKKGDSLSLSIAAASIIAKVTR-DRM 164
>gi|372276089|ref|ZP_09512125.1| ribonuclease HII [Pantoea sp. SL1_M5]
Length = 208
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 29/163 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP++G +V + + T ADSK L E++R L++++K ++
Sbjct: 12 IAGVDEVGRGPLVGAVVTAAVILDPANPIT----GLADSKKLSEKRRLALYDEIK-EKAL 66
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W++ +P E+ +++N I H + + + V +GI V +D
Sbjct: 67 AWSLGRAEPEEI-------DQLN---ILHATMLAMQRAVAGLGIQPDYVLID-------- 108
Query: 136 QAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKRSNFERM 176
R P++ K DSL +S ASI+AK S + M
Sbjct: 109 ----GNRCPALPMPSQAVVKGDSLVAEISAASIIAKVSRDQEM 147
>gi|424780491|ref|ZP_18207364.1| Ribonuclease HII [Catellicoccus marimammalium M35/04/3]
gi|422842893|gb|EKU27340.1| Ribonuclease HII [Catellicoccus marimammalium M35/04/3]
Length = 256
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 9/74 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCP--CSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
I GIDE GRGP+ GP+V + P C T+ LN DSK L E+KREELF ++ +
Sbjct: 72 IAGIDEVGRGPLAGPVVAAAVILPEDC----TIEELN--DSKQLSEKKREELFLAIQ-KE 124
Query: 74 SVGWAVDIIDPREL 87
++G V I P E+
Sbjct: 125 AIGIGVGICSPEEI 138
>gi|393762668|ref|ZP_10351294.1| ribonuclease HII [Alishewanella agri BL06]
gi|392606290|gb|EIW89175.1| ribonuclease HII [Alishewanella agri BL06]
Length = 200
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 29/163 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP++G +V + + L DSK L E+KR+ L E++K ++
Sbjct: 11 IAGVDEVGRGPLIGAVVTAAVILDPAQ----PILGLTDSKKLTEKKRQLLAEEIKAK-AL 65
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
WA+ +P E+ +++N I H + + + V + I V +D
Sbjct: 66 CWALGRAEPAEI-------DQLN---ILHATMLAMQRAVAALAIQPQWVLID-------- 107
Query: 136 QAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKRSNFERM 176
R P++ S K DSL +S ASI+AK + + M
Sbjct: 108 ----GNRCPALAMPASAVVKGDSLVAEISAASILAKVARDQEM 146
>gi|119872804|ref|YP_930811.1| ribonuclease HII [Pyrobaculum islandicum DSM 4184]
gi|189043646|sp|A1RU36.1|RNH2_PYRIL RecName: Full=Ribonuclease HII; Short=RNase HII
gi|119674212|gb|ABL88468.1| RNase HII [Pyrobaculum islandicum DSM 4184]
Length = 195
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 74/164 (45%), Gaps = 15/164 (9%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED-LKVNDS 74
I GIDEAGRGPV+GPMV + + L L DSKTL KRE ++ ++V D
Sbjct: 2 ICGIDEAGRGPVVGPMVIAAV---AGDGERLLQLGVRDSKTLSPTKREVIYARIIEVADC 58
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
V + V ++P + + + LN + D LI + E+Y D
Sbjct: 59 VNYVV--VEPHIIDEYVRRR---MLNSLELDFTARLIE------LCPAELYYVDSPDVNS 107
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMDI 178
+ + F + + VV+ P V+ ASIVAK +DI
Sbjct: 108 RRYGDALSFITGRRVVALHGGESVPQVAAASIVAKVIRDRLIDI 151
>gi|313147897|ref|ZP_07810090.1| ribonuclease HII [Bacteroides fragilis 3_1_12]
gi|423281174|ref|ZP_17260085.1| ribonuclease HII [Bacteroides fragilis HMW 610]
gi|313136664|gb|EFR54024.1| ribonuclease HII [Bacteroides fragilis 3_1_12]
gi|404583338|gb|EKA88019.1| ribonuclease HII [Bacteroides fragilis HMW 610]
Length = 201
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 32/164 (19%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G DEAGRG + G + + P ++ L LN DSK L E++R L E ++ +++ W
Sbjct: 14 GCDEAGRGCLAGAVYAAAVILPKDFENEL--LN--DSKQLSEKQRYALREVIE-REAIAW 68
Query: 78 AVDIIDPRELSAKMLNKNKINLNEIS----HDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
AV I+ P E+ +KIN+ S H + GL TR ++ I D
Sbjct: 69 AVGIVSPEEI-------DKINILNASFLAMHRAVDGLKTRPQHLLI-----------DGN 110
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
++ +++P I K D Y ++ ASI+AK + M+
Sbjct: 111 RF-----RKYPDIPHTTVVKGDGKYLSIAAASILAKTYRDDYMN 149
>gi|256003759|ref|ZP_05428747.1| Ribonuclease H [Clostridium thermocellum DSM 2360]
gi|281417482|ref|ZP_06248502.1| Ribonuclease H [Clostridium thermocellum JW20]
gi|385778809|ref|YP_005687974.1| Ribonuclease H [Clostridium thermocellum DSM 1313]
gi|419723174|ref|ZP_14250309.1| ribonuclease HII/HIII [Clostridium thermocellum AD2]
gi|419724922|ref|ZP_14251977.1| ribonuclease HII/HIII [Clostridium thermocellum YS]
gi|255992320|gb|EEU02414.1| Ribonuclease H [Clostridium thermocellum DSM 2360]
gi|281408884|gb|EFB39142.1| Ribonuclease H [Clostridium thermocellum JW20]
gi|316940489|gb|ADU74523.1| Ribonuclease H [Clostridium thermocellum DSM 1313]
gi|380771542|gb|EIC05407.1| ribonuclease HII/HIII [Clostridium thermocellum YS]
gi|380780941|gb|EIC10604.1| ribonuclease HII/HIII [Clostridium thermocellum AD2]
Length = 261
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+V + P Q + DSK L E +RE+LF D+ + ++
Sbjct: 80 IAGIDEAGRGPLAGPVVAAAVILP----QDVFIEGLNDSKKLTENQREKLF-DVINDKAI 134
Query: 76 GWAVDIIDPRELSA-KMLNKNK 96
G + I+D +++ +LN K
Sbjct: 135 GVGIGIVDEKQIDEINILNATK 156
>gi|345859698|ref|ZP_08812032.1| ribonuclease HII [Desulfosporosinus sp. OT]
gi|344327155|gb|EGW38599.1| ribonuclease HII [Desulfosporosinus sp. OT]
Length = 271
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGP+ GP+V P + L+ LN DSK L E KRE+L+ ++ ++
Sbjct: 75 LAGIDEAGRGPLAGPVVAAACILPAQF--DLSGLN--DSKMLTESKREKLYTQIQAQ-AI 129
Query: 76 GWAVDIIDPRELSA 89
+A+ +P E+ A
Sbjct: 130 DYAIGSAEPAEIDA 143
>gi|424665889|ref|ZP_18102925.1| ribonuclease HII [Bacteroides fragilis HMW 616]
gi|404574142|gb|EKA78893.1| ribonuclease HII [Bacteroides fragilis HMW 616]
Length = 201
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 32/156 (20%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G DEAGRG + G + + P ++ L LN DSK L E++R L E ++ +++ W
Sbjct: 14 GCDEAGRGCLAGAVYAAAVILPKDFENEL--LN--DSKQLSEKQRYALREVIE-REAIAW 68
Query: 78 AVDIIDPRELSAKMLNKNKINLNEIS----HDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
AV I+ P E+ +KIN+ S H + GL TR ++ I D
Sbjct: 69 AVGIVSPEEI-------DKINILNASFLAMHRAVDGLKTRPQHLLI-----------DGN 110
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
++ +++P I K D Y ++ ASI+AK
Sbjct: 111 RF-----RKYPDIPHTTVVKGDGKYLSIAAASILAK 141
>gi|359401458|ref|ZP_09194426.1| ribonuclease HII [Novosphingobium pentaromativorans US6-1]
gi|357597133|gb|EHJ58883.1| ribonuclease HII [Novosphingobium pentaromativorans US6-1]
Length = 204
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 18/158 (11%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
S ++G+DEAGRGP+ GP+V G + C + DSK L + +R +L E +K
Sbjct: 8 SGGIVIGVDEAGRGPLAGPVVAGAVLL-CKPRPP----GLDDSKKLSKARRLQLEEVIK- 61
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
WAV ++D E+ N ++ A+ + IG EV +D G+
Sbjct: 62 -RRCQWAVGVVDVEEID----RLNIFGATMLAMTRAVAALCE--KIGTEADEVLVD--GN 112
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+ + R+ + V D+L P +S ASI+AK
Sbjct: 113 MTPHGRREEWRWKARAIV---GGDALEPCISAASIIAK 147
>gi|296504332|ref|YP_003666032.1| ribonuclease HII [Bacillus thuringiensis BMB171]
gi|296325384|gb|ADH08312.1| ribonuclease HII [Bacillus thuringiensis BMB171]
Length = 257
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + + IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQII-------DDINIYQATKQA---MLDAVANLSCTPQHLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL P + K D+ +S ASI+AK
Sbjct: 173 --KLPTPIPQTSII---KGDAKSVSISAASIIAK 201
>gi|189043611|sp|A7H722.2|RNH2_ANADF RecName: Full=Ribonuclease HII; Short=RNase HII
Length = 315
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 25/161 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAG P+ GP+V G P Y+ DSK L +RE L ED+K N +V
Sbjct: 80 VAGVDEAGMAPLAGPVVAGACILPRDYRPR----GIDDSKQLDRRERERLAEDIKAN-AV 134
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
WAV A++ +++N+ + + + +TR + LT + DA K
Sbjct: 135 CWAV-------ARAEVEEIDRLNI----YRAGLLALTRAVQA---LTPAPGHVLVDARKL 180
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
R P + D+L ++ ASI+AK + E M
Sbjct: 181 P---ELRLPQTPII---HGDALSLTIAAASILAKTTRDELM 215
>gi|339443159|ref|YP_004709164.1| ribonuclease HII [Clostridium sp. SY8519]
gi|338902560|dbj|BAK48062.1| ribonuclease HII [Clostridium sp. SY8519]
Length = 254
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K+ I GIDEAGRGP+ GP+V G + P + L DSK L +REEL+
Sbjct: 67 KYEDYAMICGIDEAGRGPLAGPVVAGAVVLP----KDCRILYINDSKKLSPGRREELYAV 122
Query: 69 LKVNDSVGWAVDIIDPREL 87
++ + W+V I+ P +
Sbjct: 123 IQ-EQAAAWSVGIVGPERI 140
>gi|397775767|ref|YP_006543313.1| ribonuclease HII [Natrinema sp. J7-2]
gi|397684860|gb|AFO59237.1| ribonuclease HII [Natrinema sp. J7-2]
Length = 222
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 8/157 (5%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLN-FADSKTLKEEKREELFEDLKVNDSV 75
G+DEAG+GP LG M ++ + +A + DSK L ++REEL L+ +D +
Sbjct: 3 FGVDEAGKGPALGSMFAAAVH----LEDPVALPDGIRDSKRLTPDRREELAATLRADDRI 58
Query: 76 GWAVDIIDPRELSAKMLNKNKINL--NEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
V I P + + N + + + + + AIG + G + + DA+
Sbjct: 59 AIGVAEITPVRIDDPGTDMNSLTVEAHATAINDAIGSFGSAASTGDRPSVLCDACDTDAD 118
Query: 134 KYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAK 169
++ +++ P + AD P+V ASI+AK
Sbjct: 119 RFARRVADACPLEVDVDARHGADDDAPLVGAASIIAK 155
>gi|294102509|ref|YP_003554367.1| Ribonuclease H [Aminobacterium colombiense DSM 12261]
gi|293617489|gb|ADE57643.1| Ribonuclease H [Aminobacterium colombiense DSM 12261]
Length = 195
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
N I G+DEAGRGP+ GP+V + S LA L DSK L KRE++F+ + V+
Sbjct: 3 NRVIAGVDEAGRGPLAGPVVAAAVVLTPSQLDALAALGLNDSKKLTPLKREKIFKAM-VS 61
Query: 73 DSVGWAVDIIDPREL 87
V W PR +
Sbjct: 62 LGVAWRAQAASPRRI 76
>gi|125973279|ref|YP_001037189.1| ribonuclease HII [Clostridium thermocellum ATCC 27405]
gi|189043587|sp|A3DDG7.1|RNH2_CLOTH RecName: Full=Ribonuclease HII; Short=RNase HII
gi|125713504|gb|ABN51996.1| Ribonuclease H [Clostridium thermocellum ATCC 27405]
Length = 256
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+V + P Q + DSK L E +RE+LF D+ + ++
Sbjct: 75 IAGIDEAGRGPLAGPVVAAAVILP----QDVFIEGLNDSKKLTENQREKLF-DVINDKAI 129
Query: 76 GWAVDIIDPRELSA-KMLNKNK 96
G + I+D +++ +LN K
Sbjct: 130 GVGIGIVDEKQIDEINILNATK 151
>gi|420145722|ref|ZP_14653177.1| Ribonuclease HII (RNase HII) [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398402622|gb|EJN55940.1| Ribonuclease HII (RNase HII) [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 252
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 26/160 (16%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W + P I GIDE GRGP+ GP+V + P + A + DSK L KR+ L+ +
Sbjct: 64 WPNYPQIAGIDEVGRGPLAGPVVTAAVILPHDF----AVYDVNDSKQLSATKRQLLYRQI 119
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ +V ++ + D ++ +++N+ E + + + + + + + +D V
Sbjct: 120 -LEQAVSVSIGVSD-------VVTIDRVNILEA---TKLAMSQAIAGLSVPPDHLLIDAV 168
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL+ P+I K DS ++ ASIVAK
Sbjct: 169 --------KLNTDIPTISMF---KGDSHSISIAAASIVAK 197
>gi|153003177|ref|YP_001377502.1| ribonuclease HII [Anaeromyxobacter sp. Fw109-5]
gi|152026750|gb|ABS24518.1| Ribonuclease H [Anaeromyxobacter sp. Fw109-5]
Length = 338
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 25/161 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAG P+ GP+V G P Y+ DSK L +RE L ED+K N +V
Sbjct: 103 VAGVDEAGMAPLAGPVVAGACILPRDYRPR----GIDDSKQLDRRERERLAEDIKAN-AV 157
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
WAV A++ +++N+ + + + +TR + LT + DA K
Sbjct: 158 CWAV-------ARAEVEEIDRLNI----YRAGLLALTRAVQA---LTPAPGHVLVDARKL 203
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
R P + D+L ++ ASI+AK + E M
Sbjct: 204 P---ELRLPQTPII---HGDALSLTIAAASILAKTTRDELM 238
>gi|333986451|ref|YP_004519058.1| ribonuclease HII [Methanobacterium sp. SWAN-1]
gi|333824595|gb|AEG17257.1| ribonuclease HII [Methanobacterium sp. SWAN-1]
Length = 202
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 18/159 (11%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRG VLGP+V + + + L L DSK L ++R L +K
Sbjct: 3 IVGIDEAGRGSVLGPLVVCGVAIEENRVKYLERLKLRDSKKLSPKRRIVLSRKIK----- 57
Query: 76 GWAVDIIDPRELSAK---MLNKNKINLNEISHDSAIGLI-TRVLNIGILLTEVYLDTVG- 130
+ P +++A+ +L +NLNEI + +I +I I +D +
Sbjct: 58 --KIAECYPVKITAQDIDLLRSKDVNLNEIEKIAMKKIIGDSEPDISI------IDCIDV 109
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
++++A++ +++ V KAD Y +VS ASIVAK
Sbjct: 110 KPKRFKAEIETYKENLEVVAEHKADDKYVIVSAASIVAK 148
>gi|218883330|ref|YP_002427712.1| Ribonuclease HII [Desulfurococcus kamchatkensis 1221n]
gi|218764946|gb|ACL10345.1| Ribonuclease HII [Desulfurococcus kamchatkensis 1221n]
Length = 255
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 24/165 (14%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAGRGP +G MV + S ++L ++ DSK L+ KR + N+ +
Sbjct: 9 IGVDEAGRGPFIGDMVIAGVIGLSSAFESLVSIGLRDSKLLEPLKRLMIL-----NNMLS 63
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE-------VYLDTV 129
+DI+ +S ++++ +N+ E + I I + L+ +L + +Y+D V
Sbjct: 64 LDIDIV-ATYVSPIHIDRSNMNMLEY---TVICSILKYLSYSHILRQHQGTGVRIYIDEV 119
Query: 130 GDAEKYQAKLSQ-----RFPSIKFVVSKKADSLYPVVSGASIVAK 169
+ Y K+ + +++ + +AD+ YP VS AS+VAK
Sbjct: 120 ---KGYNDKIGECARGLYRGNVEIFIESRADAKYPAVSAASVVAK 161
>gi|354604170|ref|ZP_09022162.1| ribonuclease HII [Alistipes indistinctus YIT 12060]
gi|353348181|gb|EHB92454.1| ribonuclease HII [Alistipes indistinctus YIT 12060]
Length = 203
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 24/159 (15%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G DEAGRGP+ GP+ + P + L LN DSK + E+ R L + ++V W
Sbjct: 14 GCDEAGRGPLAGPVTAAAVILPPGWFHPL--LN--DSKKMSEKNR-NLLRTVIEQEAVAW 68
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
AV+I+ P E+ ++IN+ S + +T++ LL + D ++++
Sbjct: 69 AVEIVMPEEI-------DRINILNASFAAMSRAVTKLGTKPQLL-------LIDGNRFRS 114
Query: 138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
L I + K D+ Y ++ AS++AK E M
Sbjct: 115 SL-----DIPYRCIVKGDATYAPIAAASVLAKTYRDEYM 148
>gi|284164032|ref|YP_003402311.1| ribonuclease HII [Haloterrigena turkmenica DSM 5511]
gi|284013687|gb|ADB59638.1| ribonuclease HII [Haloterrigena turkmenica DSM 5511]
Length = 228
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 26/169 (15%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
G+DEAG+GP LG M ++C T ADSK L E+REEL ++ +D +
Sbjct: 3 FGVDEAGKGPALGSMFAAAVHC---EDPTALPDGIADSKRLSPERREELAAAIREDDGIR 59
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV------YLDTVG 130
V E++ ++ + ++N ++ + I L L T DT
Sbjct: 60 VGV-----AEITPARIDDPETDMNSLAVAAHAEAIDGALEADALETAPITGLCDACDT-- 112
Query: 131 DAEKYQAKLSQRFPS----------IKFVVSKKADSLYPVVSGASIVAK 169
DAE++ +++ I AD P+V AS+VAK
Sbjct: 113 DAERFARRVTDACTDLFADASSALEINIEARHGADDESPIVGAASVVAK 161
>gi|171184725|ref|YP_001793644.1| ribonuclease HII [Pyrobaculum neutrophilum V24Sta]
gi|254807995|sp|B1YB67.1|RNH2_THENV RecName: Full=Ribonuclease HII; Short=RNase HII
gi|170933937|gb|ACB39198.1| ribonuclease HII [Pyrobaculum neutrophilum V24Sta]
Length = 198
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 15/153 (9%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE-DLKVNDSVG 76
G+DEAGRGPV+GPMV + LA L DSK L E+RE L++ L+ D V
Sbjct: 7 GVDEAGRGPVVGPMVIAVV---VGDGGVLARLGVRDSKRLSPERRERLYQLILEAADCVN 63
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
+ V ++P + + + +N E+ + + + I + +VY D + +
Sbjct: 64 YVV--VEPAVVDTYVW-RGLLNALELDYTAKL--------IELCPADVYYVDSPDVDPRR 112
Query: 137 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+ F + + VV+ P V+ ASIVAK
Sbjct: 113 YGSALEFITGRRVVAMHKGESVPQVAAASIVAK 145
>gi|448384513|ref|ZP_21563351.1| ribonuclease HII [Haloterrigena thermotolerans DSM 11522]
gi|445658579|gb|ELZ11397.1| ribonuclease HII [Haloterrigena thermotolerans DSM 11522]
Length = 223
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 7/157 (4%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
G+DEAG+GP LG M ++ C L DSK L E+REEL L+ +D +
Sbjct: 3 FGVDEAGKGPALGSMFAAAVH--CDAPDDLPD-GIRDSKRLSPERREELAATLRGDDRIA 59
Query: 77 WAVDIIDPRELSAKMLNKNKINL--NEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
V I P + + N + + + + + A+ RV + + + DA++
Sbjct: 60 IGVAEITPARIDDPETDMNSLAVAAHATAIEGALADRARVASADEQFSGLCDACDTDADR 119
Query: 135 YQAKLSQ--RFPSIKFVVSKKADSLYPVVSGASIVAK 169
+ +++ ++ AD P+V ASIVAK
Sbjct: 120 FARRVADACSLEALTVDARHGADDESPLVGAASIVAK 156
>gi|229192006|ref|ZP_04318976.1| Ribonuclease [Bacillus cereus ATCC 10876]
gi|228591557|gb|EEK49406.1| Ribonuclease [Bacillus cereus ATCC 10876]
Length = 254
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 71 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 125
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P + + IN+ + + + ++ V N+ + +D +
Sbjct: 126 AIGVGIVSPEVI-------DDINIYQATKQA---MLDAVANLSCTPQHLLIDAM------ 169
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL P + K D+ +S ASI+AK
Sbjct: 170 --KLPTPIPQTSII---KGDAKSVSISAASIIAK 198
>gi|399577795|ref|ZP_10771547.1| rnase hii [Halogranum salarium B-1]
gi|399237237|gb|EJN58169.1| rnase hii [Halogranum salarium B-1]
Length = 219
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 23/161 (14%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G DEAG+GPVLGPMV + TL + DSK + +REE+ L+ +D V
Sbjct: 4 VGADEAGKGPVLGPMVAAAVRT----DPTLLPHDIDDSKQVAPARREEIATALRTHDDVD 59
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLI--------TRVLNIGILLTEVYLDT 128
V +I S ++ + ++N ++ + + + T V++ G + E +
Sbjct: 60 VGVGVI-----STDRIDDPETDMNSLTVAAQVEAVAAVACDGDTVVVDAGDVSEERF--- 111
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+ + +++ I V AD + +V ASIVAK
Sbjct: 112 ---GRRVRDGVAEIGVDIDVVSEHGADETHGIVGAASIVAK 149
>gi|345017759|ref|YP_004820112.1| ribonuclease HII/HIII [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033102|gb|AEM78828.1| ribonuclease HII/HIII [Thermoanaerobacter wiegelii Rt8.B1]
Length = 242
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP++GP+V C+ P + + DSK L E+KRE L E +K +
Sbjct: 60 IAGVDEAGRGPLVGPVVAACVILP----KEVFIPEINDSKKLSEKKREVLSEVIK-KVAT 114
Query: 76 GWAVDIIDPREL 87
+A+ I+D E+
Sbjct: 115 SYAIGIVDCEEI 126
>gi|418465650|ref|ZP_13036584.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans RhAA1]
gi|359755922|gb|EHK90084.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans RhAA1]
Length = 199
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 30/165 (18%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I G+DE GRGP++G +V + + ADSKTL E+KR L E++K +
Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVILDPQH----PVEGLADSKTLSEKKRLLLAEEIK-QKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ WA+ +P N+I+ I H S + + ++ I V +D
Sbjct: 67 LAWALGRAEP----------NEIDELNILHASMFAMERAIKHLKIQPHFVLVD------- 109
Query: 135 YQAKLSQRFPSIKFVVSK---KADSLYPVVSGASIVAKRSNFERM 176
R P + ++ K D+L P +S ASI+AK + + M
Sbjct: 110 -----GNRIPPNLMIPAQAVVKGDALVPEISAASILAKVARDQEM 149
>gi|325282798|ref|YP_004255339.1| Ribonuclease H [Deinococcus proteolyticus MRP]
gi|324314607|gb|ADY25722.1| Ribonuclease H [Deinococcus proteolyticus MRP]
Length = 215
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRG GP+ + P T A L FADSKTL +RE L E+++ +V
Sbjct: 27 VAGVDEAGRGAWAGPVTVAAVILP----NTGAELPFADSKTLTARQREMLAEEVR-RVAV 81
Query: 76 GWAVDIIDPREL 87
WAV+ P E+
Sbjct: 82 AWAVEYAWPDEI 93
>gi|296117635|ref|ZP_06836219.1| ribonuclease HII [Corynebacterium ammoniagenes DSM 20306]
gi|295969366|gb|EFG82607.1| ribonuclease HII [Corynebacterium ammoniagenes DSM 20306]
Length = 223
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 4 EAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKRE 63
E AL K P + G+DEAGRG GP+ P +LATL DSK L ++RE
Sbjct: 11 EVALSKAGLGP-VAGVDEAGRGACAGPITIAACILPEKIIPSLATLT--DSKKLSAKQRE 67
Query: 64 ELFEDLKVNDSVGWAVDIIDPREL 87
ELF ++ N ++ +++ IDP ++
Sbjct: 68 ELFPAIQRN-ALAYSIVHIDPGDI 90
>gi|330508333|ref|YP_004384761.1| ribonuclease HII [Methanosaeta concilii GP6]
gi|328929141|gb|AEB68943.1| ribonuclease HII [Methanosaeta concilii GP6]
Length = 210
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 13/157 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+MG DEAG+GPV+G M L LA L DSK L KRE L + +
Sbjct: 3 LMGADEAGKGPVIGSMFVAGLVIDEERFFDLAVLGVKDSKMLSPAKREALARKITTIATD 62
Query: 76 GWAVDIIDPRELSAKMLNKNKI--NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
+ + E+ A+++++ ++ +N+I S ++ R+ +L + +AE
Sbjct: 63 QYIL------EVRAEVIDELRLVMTMNDIMVRSFSQVVGRLHADRAILDAADV----NAE 112
Query: 134 KY-QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
++ QA + S+ + KAD + VVS ASI+AK
Sbjct: 113 RFAQAVRNHSKTSMDLIAEHKADQRHHVVSAASILAK 149
>gi|383316023|ref|YP_005376865.1| ribonuclease HII [Frateuria aurantia DSM 6220]
gi|379043127|gb|AFC85183.1| ribonuclease HII [Frateuria aurantia DSM 6220]
Length = 198
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+ + + +A LN DSK L E++RE L+E + + ++
Sbjct: 7 IAGVDEAGRGPLAGPLTVAAVI--LDPARPIAGLN--DSKKLSEKRREALYEQI-IERAL 61
Query: 76 GWAVDIIDPRELSA 89
W ++II+ E+ A
Sbjct: 62 AWRIEIIEVAEIDA 75
>gi|348686595|gb|EGZ26410.1| hypothetical protein PHYSODRAFT_481980 [Phytophthora sojae]
Length = 255
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++G+DEAGRGP+ GP+V + P + DSK + E +RE LFE L + S
Sbjct: 51 TVIGVDEAGRGPLAGPVVAAACHVPLD----VTIEGVDDSKKISEPQREALFELLTNHPS 106
Query: 75 VGWAVDI 81
+ +AV +
Sbjct: 107 ITYAVHV 113
>gi|325294626|ref|YP_004281140.1| ribonuclease HIII [Desulfurobacterium thermolithotrophum DSM 11699]
gi|325065074|gb|ADY73081.1| ribonuclease HIII [Desulfurobacterium thermolithotrophum DSM 11699]
Length = 270
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 18/166 (10%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G DEAG+G +GP+V C+ + + L L DSK L EK ++ E++K
Sbjct: 75 VGCDEAGKGEFVGPLVVACVCADKNCLRKLLDLGVKDSKALSREKILKMAEEIK--KYCR 132
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLT-----EVYLDTVGD 131
V +I P + + K+ K K NLN + D + L IG LL EV +D
Sbjct: 133 GRVKVIMPFQYN-KLYEKYK-NLNRLLEDIYVEL------IGSLLAKYSPQEVIVDKF-- 182
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
+ + + L ++F + F V KA+ VV+ ASIVAK + M+
Sbjct: 183 SSRIEPLLKEKFKNTSFKVVPKAEKDL-VVAAASIVAKAERLKAME 227
>gi|448490375|ref|ZP_21607963.1| ribonuclease HII [Halorubrum californiensis DSM 19288]
gi|445693979|gb|ELZ46117.1| ribonuclease HII [Halorubrum californiensis DSM 19288]
Length = 236
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 19/168 (11%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAG+GP LGPM + T + DSK + +REE+ L+ + +V
Sbjct: 3 LGVDEAGKGPALGPMAAAAVIA----DPTSLPADVDDSKRIAPARREEMATALRDDPAVA 58
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR----------VLNIGILLTEVYL 126
V ++P E+ + N + + + L R V + G E +
Sbjct: 59 VGVARVEPTEIDRPDTDMNTLTVRGQARAVRDALADRPAETAEPVRVVADAGDTSEERFA 118
Query: 127 DTV-----GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+ + GD P++ + AD PVV AS+VAK
Sbjct: 119 ERLVRFVEGDDADESVGDGISLPAVDVTAAHGADGDDPVVGAASVVAK 166
>gi|268590518|ref|ZP_06124739.1| ribonuclease HII [Providencia rettgeri DSM 1131]
gi|291314104|gb|EFE54557.1| ribonuclease HII [Providencia rettgeri DSM 1131]
Length = 197
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 29/156 (18%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP++G +V + + ADSK L E+KRE+LF++++ ++
Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVIL----DPNNPIIGLADSKKLTEKKREKLFDEIQ-EKAL 65
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W + +P E+ N+N I H + + + V + I+ V +D
Sbjct: 66 CWCIGRAEPEEID---------NIN-ILHATMLAMQRAVAGLSIIPEYVLID-------- 107
Query: 136 QAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAK 169
R P + K DSL +S ASI+AK
Sbjct: 108 ----GNRCPELPMPSQAVIKGDSLVQEISAASILAK 139
>gi|193211692|ref|YP_001997645.1| ribonuclease HII [Chlorobaculum parvum NCIB 8327]
gi|238692672|sp|B3QQY0.1|RNH2_CHLP8 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|193085169|gb|ACF10445.1| Ribonuclease H [Chlorobaculum parvum NCIB 8327]
Length = 205
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
+ +E P W + + GIDEAGRGP+ GP+V + P ++ T DSK L E
Sbjct: 2 LSTEFETPLWENLSRVCGIDEAGRGPLAGPVVAAAVAFPRHFKPTGILEKLDDSKKLTAE 61
Query: 61 KREELFEDLKVNDSVGWAVDIID 83
REEL ++ + WAV ++D
Sbjct: 62 LREELAPAIR-ESAEAWAVAVVD 83
>gi|448556345|ref|ZP_21631996.1| ribonuclease HII, partial [Haloferax sp. ATCC BAA-644]
gi|445716718|gb|ELZ68456.1| ribonuclease HII, partial [Haloferax sp. ATCC BAA-644]
Length = 66
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAG+GPVLGPMV + + ADSK L E+REEL +L+ D +
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVRG----EPDALPDGIADSKRLSPERREELATELRERDDIS 58
Query: 77 WAVDIIDP 84
V ++P
Sbjct: 59 VGVAFVEP 66
>gi|50119985|ref|YP_049152.1| ribonuclease HII [Pectobacterium atrosepticum SCRI1043]
gi|73917607|sp|Q6D8C9.1|RNH2_ERWCT RecName: Full=Ribonuclease HII; Short=RNase HII
gi|49610511|emb|CAG73956.1| ribonuclease HII [Pectobacterium atrosepticum SCRI1043]
Length = 198
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 29/164 (17%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI G+DE GRGP++G +V + T + ADSK L E++R L++++K +
Sbjct: 12 CIAGVDEVGRGPLVGAVVTAAVIL----DPTRPIVGLADSKQLSEKRRLSLYDEIK-EKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ +++N I H + + + V + I+ V +D
Sbjct: 67 LAWSLGRAEPEEI-------DQLN---ILHATMLAMQRAVAALAIVPDFVLID------- 109
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKRSNFERM 176
R P++ K DS +S ASI+AK + M
Sbjct: 110 -----GNRCPALPMPAQAVVKGDSRVAEISAASIMAKVTRDREM 148
>gi|448327673|ref|ZP_21516995.1| ribonuclease HII [Natrinema versiforme JCM 10478]
gi|445617302|gb|ELY70900.1| ribonuclease HII [Natrinema versiforme JCM 10478]
Length = 223
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 15/161 (9%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
G+DEAG+GP LG M ++C + DSK L E+REEL L+ +D +
Sbjct: 3 FGVDEAGKGPALGSMFAAAVHC---EDSAVLPDGIRDSKRLSPERREELAATLRADDRIA 59
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAI-GLITRVLNIGILLTEV-----YLDTVG 130
V I P + + N + + +H AI G + + G + DT
Sbjct: 60 VGVAEIPPTRIDDSETDMNSLAV--AAHAEAIEGAVADLERDGTATEPISGLCDACDT-- 115
Query: 131 DAEKYQAKLSQRFPSIKFVVSKK--ADSLYPVVSGASIVAK 169
DA+++ +++ + V + AD +V ASI+AK
Sbjct: 116 DADRFARRVADACSLERLAVDARHGADDDSLLVGAASIIAK 156
>gi|293400516|ref|ZP_06644661.1| ribonuclease HII [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|373452162|ref|ZP_09544080.1| hypothetical protein HMPREF0984_01122 [Eubacterium sp. 3_1_31]
gi|291305542|gb|EFE46786.1| ribonuclease HII [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|371967594|gb|EHO85065.1| hypothetical protein HMPREF0984_01122 [Eubacterium sp. 3_1_31]
Length = 207
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 60/104 (57%), Gaps = 10/104 (9%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRGP+ GP+V + P + + DSK L E+KR+ LF+++ + +
Sbjct: 19 IIGIDEAGRGPIAGPLVVAAVSFPVGFSHE----SIYDSKKLSEKKRKALFQEI-IQLAS 73
Query: 76 GWAVDIIDPRELSAKMLNK-NKINLNEIS---HDSAIGLITRVL 115
+ + I+ P+ + + + + ++ + E+S HD A G++T +
Sbjct: 74 EYHIKIVSPQIIDEQNIYRATQLAMLELSNSFHD-ADGVLTDAM 116
>gi|333897172|ref|YP_004471046.1| ribonuclease H [Thermoanaerobacterium xylanolyticum LX-11]
gi|333112437|gb|AEF17374.1| Ribonuclease H [Thermoanaerobacterium xylanolyticum LX-11]
Length = 252
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V GC+ P +Q+ + DSK L E KRE L E +K ++
Sbjct: 70 IGGIDEVGRGPLAGPVVAGCVILP---KQSFIP-DIDDSKKLSESKRELLSEIIK-KKAI 124
Query: 76 GWAVDIIDPREL 87
+ + IID ++
Sbjct: 125 AYGIGIIDNEQI 136
>gi|256750728|ref|ZP_05491613.1| Ribonuclease H [Thermoanaerobacter ethanolicus CCSD1]
gi|256750311|gb|EEU63330.1| Ribonuclease H [Thermoanaerobacter ethanolicus CCSD1]
Length = 242
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP++GP+V C+ P + + DSK L EEKRE L E +K ++
Sbjct: 60 IAGVDEAGRGPLVGPVVAACVIFP----KDVFIPEINDSKKLSEEKREVLSEVIK-KVAI 114
Query: 76 GWAVDIIDPREL 87
++ I+D E+
Sbjct: 115 SYSFGIVDCEEI 126
>gi|338732656|ref|YP_004671129.1| ribonuclease HII [Simkania negevensis Z]
gi|336482039|emb|CCB88638.1| ribonuclease HII [Simkania negevensis Z]
Length = 207
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 24/161 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+V C + + L DSK + KREE+++ L + +
Sbjct: 22 IAGVDEAGRGPLAGPVVAAA----CIFPRGLVLEGVDDSKKISPIKREEIYQILVSHPEI 77
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+A+ +++ + +I++ I S + V N +++ +L G+
Sbjct: 78 DFAIGVVE----------QAQIDVINILQASLAAMAIAVKN--LIVEPDFLLVDGNQLP- 124
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
R PS K VV K DSL ++ ASI+AK S + M
Sbjct: 125 ----PTRIPS-KAVV--KGDSLSQSIAAASILAKHSRDQMM 158
>gi|387927053|ref|ZP_10129732.1| ribonuclease HII [Bacillus methanolicus PB1]
gi|387589197|gb|EIJ81517.1| ribonuclease HII [Bacillus methanolicus PB1]
Length = 259
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 34/163 (20%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP+ GP+V + P + L ++ DSK L + KREE + K+ S
Sbjct: 73 IAGVDEVGRGPLAGPVVAAAVILPSEF--YLPGID--DSKKLTKAKREEFY---KIISSS 125
Query: 76 GWAVDI--IDPRELSAKMLNKNKINLNEISHDSAIGLITRV-LNIGILLTEVYLDTVGDA 132
G A+ I ID E+ ++IN+NE + + + IT + N LL +
Sbjct: 126 GAAIGIGMIDHDEI-------DRININEAAKKAMLEAITNLETNPDCLLIDA-------- 170
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK--RSNF 173
KL +PS + K D ++ ASIVAK R N+
Sbjct: 171 ----MKLDTPYPSESII---KGDGKSVSIAAASIVAKVVRDNY 206
>gi|433655060|ref|YP_007298768.1| ribonuclease HII [Thermoanaerobacterium thermosaccharolyticum
M0795]
gi|433293249|gb|AGB19071.1| ribonuclease HII [Thermoanaerobacterium thermosaccharolyticum
M0795]
Length = 245
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I G+DE GRGP+ GP+V GC+ P + + + DSK L EEKRE L E +K +
Sbjct: 59 AIGGVDEVGRGPLAGPVVAGCVVLP----KDVFIPDVNDSKKLGEEKRELLSEVIK-KSA 113
Query: 75 VGWAVDIIDPREL-SAKMLN 93
+ + + IID + S +LN
Sbjct: 114 IAYGIGIIDNEYIDSVNILN 133
>gi|46579247|ref|YP_010055.1| ribonuclease HII [Desulfovibrio vulgaris str. Hildenborough]
gi|387152632|ref|YP_005701568.1| Ribonuclease H [Desulfovibrio vulgaris RCH1]
gi|81404983|sp|Q72DU5.1|RNH2_DESVH RecName: Full=Ribonuclease HII; Short=RNase HII
gi|46448661|gb|AAS95314.1| ribonuclease HII [Desulfovibrio vulgaris str. Hildenborough]
gi|311233076|gb|ADP85930.1| Ribonuclease H [Desulfovibrio vulgaris RCH1]
Length = 220
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 24/169 (14%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
P GIDEAGRG + GP+V + P Y A DSK L +RE L E ++ +
Sbjct: 16 PVFAGIDEAGRGCLAGPVVAAAVILPQEY----ALPGLTDSKKLTAARRESLAEGIR-SC 70
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
+V W + ++ PR++ ++IN+ + + A+ RVL + +D GD
Sbjct: 71 AVTWGIGVVWPRDI-------DRINILQATF-RAMARAVRVLRQPP--PAILID--GDKT 118
Query: 134 KYQAKLSQ-----RFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
L+ P+ + ++ D P +S ASI+AK MD
Sbjct: 119 LPPHVLTSLSCDGHLPTQRAIIG--GDGCIPAISAASILAKTFRDRLMD 165
>gi|227114701|ref|ZP_03828357.1| ribonuclease HII [Pectobacterium carotovorum subsp. brasiliensis
PBR1692]
gi|403057427|ref|YP_006645644.1| ribonuclease HII [Pectobacterium carotovorum subsp. carotovorum
PCC21]
gi|402804753|gb|AFR02391.1| ribonuclease HII [Pectobacterium carotovorum subsp. carotovorum
PCC21]
Length = 198
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 29/164 (17%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI G+DE GRGP++G +V + T + ADSK L E++R L++++K +
Sbjct: 12 CIAGVDEVGRGPLVGAVVTAAVIL----DPTRPIVGLADSKKLSEKRRLSLYDEIK-EKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ +++N I H + + + V + ++ V +D
Sbjct: 67 LAWSLGRAEPEEI-------DQLN---ILHATMLAMQRAVAGLAVVPDFVLID------- 109
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKRSNFERM 176
R P++ K DS +S ASI+AK + M
Sbjct: 110 -----GNRCPALPMPAQAVVKGDSRVAEISAASIMAKVTRDREM 148
>gi|251772986|gb|EES53543.1| Ribonuclease HII [Leptospirillum ferrodiazotrophum]
Length = 195
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV---ND 73
MG+DE GRGP+ GP+V C++ + L+ L ADSK+L ++R+EL + +
Sbjct: 1 MGVDEVGRGPLAGPVVAACVFFSAPVSR-LSRLGIADSKSLSSDRRDELSRLIHTEADHV 59
Query: 74 SVGWA 78
S+GW+
Sbjct: 60 SLGWS 64
>gi|390934872|ref|YP_006392377.1| ribonuclease HII/HIII [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389570373|gb|AFK86778.1| ribonuclease HII/HIII [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 252
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V GC+ P +Q+L + DSK L E KRE L E +K ++
Sbjct: 70 IGGIDEVGRGPLAGPVVAGCVILP---KQSLIP-DIDDSKKLSEAKRELLSEIIK-KKAI 124
Query: 76 GWAVDIID 83
+ + IID
Sbjct: 125 SYGIGIID 132
>gi|386876647|ref|ZP_10118743.1| ribonuclease HII [Candidatus Nitrosopumilus salaria BD31]
gi|386805548|gb|EIJ65071.1| ribonuclease HII [Candidatus Nitrosopumilus salaria BD31]
Length = 206
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 12/156 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED-LKVNDS 74
I G+D+AGRG +LGP+V + + L+ L DSK L + RE+L++ +K+ DS
Sbjct: 3 ICGVDDAGRGSMLGPLVIAGISLDKKNLKQLSLLGVKDSKKLSPKSREDLYKKIIKIADS 62
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAE 133
+ V I P+ + A + N + +N+ E + + + LN Y+D+ +
Sbjct: 63 --YYVVKISPKSIDASVKN-HCLNVLEAKY---MAKVVSKLN----PDTSYVDSCDVNPS 112
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
++ ++S+ + K ADS + +VS ASI+AK
Sbjct: 113 RFGREISKMSDNHKIKSYHHADSRFVIVSAASILAK 148
>gi|159042290|ref|YP_001541542.1| ribonuclease HII [Caldivirga maquilingensis IC-167]
gi|189043570|sp|A8MAH5.1|RNH2_CALMQ RecName: Full=Ribonuclease HII; Short=RNase HII
gi|157921125|gb|ABW02552.1| ribonuclease HII [Caldivirga maquilingensis IC-167]
Length = 209
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 72/152 (47%), Gaps = 12/152 (7%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGPV+GPMV + S + + DSK L R L++ L V+ +
Sbjct: 10 GIDEAGRGPVIGPMVIAIVGWSNSEAEGIGV---KDSKQLTPSGRSRLYK-LIVSKAPCV 65
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
I++P E+ + N+ LNE+ LI + T VY+D+ D +
Sbjct: 66 RHVIVEPSEIDYYV---NRGLLNELEAIKMSELIKACSGV----TRVYVDS-PDPNPSRF 117
Query: 138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+ ++ +V AD P+VS ASIVAK
Sbjct: 118 RGFINVKDVELIVLNHADESIPLVSAASIVAK 149
>gi|259046715|ref|ZP_05737116.1| ribonuclease HII [Granulicatella adiacens ATCC 49175]
gi|259036611|gb|EEW37866.1| ribonuclease HII [Granulicatella adiacens ATCC 49175]
Length = 256
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I GIDE GRGP+ GP+V + P + + + DSK L ++REE+FE +K +
Sbjct: 73 MIAGIDEVGRGPLAGPVVAAAVILP----EGMEDIGLDDSKKLSAKRREEIFEMIK-EQA 127
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEIS 103
V + I+D +KIN+ E S
Sbjct: 128 VAIGIGIVDA-------FTIDKINIYEAS 149
>gi|171920922|ref|ZP_02932071.1| ribonuclease HII [Ureaplasma urealyticum serovar 13 str. ATCC
33698]
gi|185178980|ref|ZP_02964735.1| ribonuclease HII [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
gi|188023994|ref|ZP_02996755.1| ribonuclease HII [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
gi|188518241|ref|ZP_03003771.1| ribonuclease HII [Ureaplasma urealyticum serovar 11 str. ATCC
33695]
gi|188524398|ref|ZP_03004424.1| ribonuclease HII [Ureaplasma urealyticum serovar 12 str. ATCC
33696]
gi|198273849|ref|ZP_03206383.1| ribonuclease HII [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
gi|209554110|ref|YP_002284833.1| ribonuclease HIII [Ureaplasma urealyticum serovar 10 str. ATCC
33699]
gi|225550434|ref|ZP_03771383.1| ribonuclease HII [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
gi|225551445|ref|ZP_03772391.1| ribonuclease HII [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
gi|171903150|gb|EDT49439.1| ribonuclease HII [Ureaplasma urealyticum serovar 13 str. ATCC
33698]
gi|184209262|gb|EDU06305.1| ribonuclease HII [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
gi|188019019|gb|EDU57059.1| ribonuclease HII [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
gi|188998110|gb|EDU67207.1| ribonuclease HII [Ureaplasma urealyticum serovar 11 str. ATCC
33695]
gi|195659944|gb|EDX53324.1| ribonuclease HII [Ureaplasma urealyticum serovar 12 str. ATCC
33696]
gi|198249604|gb|EDY74386.1| ribonuclease HII [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
gi|209541611|gb|ACI59840.1| ribonuclease HIII [Ureaplasma urealyticum serovar 10 str. ATCC
33699]
gi|225379260|gb|EEH01625.1| ribonuclease HII [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
gi|225379588|gb|EEH01950.1| ribonuclease HII [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
Length = 317
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 88/176 (50%), Gaps = 20/176 (11%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQT----LATLNFADSKTLKEEKREEL 65
+ +N I+G DE G G + G G + C S +Q+ LA LN DSK L + + +E+
Sbjct: 98 YQNNQIIIGSDEVGVGDLFG----GIVVCAVSLKQSDLKFLAHLNIVDSKKLSDHQMQEI 153
Query: 66 FEDLKVNDSVGWAVDIIDPRELSAKMLNK--NKINLNEISHDSAI-GLITRVLNIGILLT 122
+E K+ + + + V +P+E + +++N+ N L I H A+ I + N I
Sbjct: 154 YE--KIKNQISYTVLSYNPKEYN-ELINQYNNAHVLKTILHYKAVQSEIVKHQNYSIFSV 210
Query: 123 EVYLDTVGDAEKY--QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
++ + +Y +A L P++ + KA+S Y V+ ASI+A R F +M
Sbjct: 211 VDAFSSLKNWNQYLQKAHLKPYEPNL---LIPKAESSYTSVALASIIA-RVMFLKM 262
>gi|311030147|ref|ZP_07708237.1| Ribonuclease H [Bacillus sp. m3-13]
Length = 256
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + DSK L +KRE F +K + ++
Sbjct: 74 IAGIDEVGRGPLAGPVVAAAVILPEDFHLP----GLTDSKKLNAQKREHFFRYVKEH-AI 128
Query: 76 GWAVDIIDPREL 87
+ + IID RE+
Sbjct: 129 SYGIGIIDSREI 140
>gi|163941575|ref|YP_001646459.1| ribonuclease HII [Bacillus weihenstephanensis KBAB4]
gi|423518527|ref|ZP_17495008.1| ribonuclease HII [Bacillus cereus HuA2-4]
gi|229564282|sp|A9VT75.1|RNH2_BACWK RecName: Full=Ribonuclease HII; Short=RNase HII
gi|163863772|gb|ABY44831.1| Ribonuclease H [Bacillus weihenstephanensis KBAB4]
gi|401160735|gb|EJQ68110.1| ribonuclease HII [Bacillus cereus HuA2-4]
Length = 257
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++K + ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIK-DHAI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V II P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIISPQVI-------DEINIYQATKQA---MLDAVANLSCTPEYLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL P + K D+ +S ASI+AK
Sbjct: 173 --KLPTSIPQTSII---KGDAKSVSISAASIIAK 201
>gi|229157413|ref|ZP_04285491.1| Ribonuclease [Bacillus cereus ATCC 4342]
gi|228626140|gb|EEK82889.1| Ribonuclease [Bacillus cereus ATCC 4342]
Length = 257
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++K +V
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIKAQ-AV 128
Query: 76 GWAVDIIDPR 85
V I+ PR
Sbjct: 129 AIGVGIVSPR 138
>gi|154151483|ref|YP_001405101.1| ribonuclease HII [Methanoregula boonei 6A8]
gi|166226624|sp|A7I9P7.1|RNH2_METB6 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|154000035|gb|ABS56458.1| ribonuclease HII [Methanoregula boonei 6A8]
Length = 213
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 70/154 (45%), Gaps = 10/154 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAG+G VLGPMV + + + DSK L +RE LF +K V
Sbjct: 2 ICGVDEAGKGSVLGPMVIAGV--GVGSTEMIDGFGLRDSKQLSPSERERLFVLIKKKCKV 59
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
A +I E+ A + ++ LN + +I ++ + ++ AE
Sbjct: 60 --ATVVISAAEIDA---FRREMTLNTCVARAHAVVIAQLAPEIAYVDACDVNPFRYAETV 114
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+ LS + V ADS YPVVS ASIVAK
Sbjct: 115 RGYLSS---PCEIVSEHHADSTYPVVSAASIVAK 145
>gi|385323341|ref|YP_005877780.1| ribonuclease HII (RNase HII) [Neisseria meningitidis 8013]
gi|261391728|emb|CAX49177.1| ribonuclease HII (RNase HII) [Neisseria meningitidis 8013]
Length = 194
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 62/154 (40%), Gaps = 30/154 (19%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGP++G + + P +T DSK L E+KR+ L E +K N + W
Sbjct: 7 GVDEAGRGPLVGSVFAAAVILP----ETFDLPGLTDSKKLSEKKRDTLAEMIK-NQAAAW 61
Query: 78 AVDIIDPRE------LSAKMLNKNKINLNEISHDSAIGL----ITRVLNIG--------- 118
V P E L A ML + + H I + I LNI
Sbjct: 62 HVSAATPEEIASLNILHATMLAMKRAVDGLVVHPEKIFIDGNRIPEHLNIPAEAVVKGDS 121
Query: 119 ----ILLTEVYLDTVGDAEKYQAKLSQRFPSIKF 148
I V T DAE Y L+QR P F
Sbjct: 122 KIIEISAASVLAKTARDAEMY--ALAQRHPQYGF 153
>gi|238897797|ref|YP_002923476.1| RNAse HII [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|259494067|sp|C4K435.1|RNH2_HAMD5 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|229465554|gb|ACQ67328.1| RNAse HII [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 200
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 25/163 (15%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I G+DE GRGP+ GP+V + + ADSKTL ++KR L+E++ + +
Sbjct: 12 SIAGVDEVGRGPLAGPVVTAAVIL----DPKNPIIGLADSKTLSKKKRMALYEEI-THKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ + +E+ ++IN I H + + + V +GI V +D
Sbjct: 67 LAWSLGRAESKEI-------DEIN---IFHATLLAMQRAVNALGIKTDHVLIDG-----H 111
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
LS PS V K DS P +S ASI+AK + M+
Sbjct: 112 ICPILS--IPSSSIV---KGDSKVPEISAASILAKVTRDREME 149
>gi|421558167|ref|ZP_16004051.1| ribonuclease HII [Neisseria meningitidis 92045]
gi|402338561|gb|EJU73792.1| ribonuclease HII [Neisseria meningitidis 92045]
Length = 194
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 62/154 (40%), Gaps = 30/154 (19%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGP++G + + P +T DSK L E+KR+ L E +K N + W
Sbjct: 7 GVDEAGRGPLVGSVFAAAVILP----ETFDLPGLTDSKKLSEKKRDTLAEMIK-NQAAAW 61
Query: 78 AVDIIDPRE------LSAKMLNKNKINLNEISHDSAIGL----ITRVLNIG--------- 118
V P E L A ML + + H I + I LNI
Sbjct: 62 HVSAATPEEIASLNILHATMLAMKRAVDGLVVHPEKIFIDGNRIPEHLNIPAEAVVKGDS 121
Query: 119 ----ILLTEVYLDTVGDAEKYQAKLSQRFPSIKF 148
I V T DAE Y L+QR P F
Sbjct: 122 KIIEISAASVLAKTARDAEMY--ALAQRHPQYGF 153
>gi|300361596|ref|ZP_07057773.1| ribonuclease H [Lactobacillus gasseri JV-V03]
gi|300354215|gb|EFJ70086.1| ribonuclease H [Lactobacillus gasseri JV-V03]
Length = 250
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W N + G+DE GRGP+ GP+V + P ++ ++ DSK L +KR+ LF +
Sbjct: 62 WQKNQLVAGVDEVGRGPLAGPVVTAAVILPHNFD----LIDVNDSKKLSPKKRKALFPQI 117
Query: 70 ---KVNDSVGWA-VDIID 83
V+ SVG A D+ID
Sbjct: 118 LAKAVSVSVGLANNDVID 135
>gi|21675069|ref|NP_663134.1| ribonuclease HII [Chlorobium tepidum TLS]
gi|39932423|sp|Q8KAA5.1|RNH2_CHLTE RecName: Full=Ribonuclease HII; Short=RNase HII
gi|21648308|gb|AAM73476.1| ribonuclease HII [Chlorobium tepidum TLS]
Length = 205
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 8 PKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE 67
P W S + GIDEAGRGP+ GP+V + P ++ T DSK L E R+EL
Sbjct: 9 PLWESLSQVCGIDEAGRGPLAGPVVAAAVVFPRHFRPTGIFAKLDDSKKLTAELRDEL-- 66
Query: 68 DLKVNDSV-GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL 126
L + +S WA+ ++D + ++IN +L +L + +
Sbjct: 67 ALAIRESAESWALGVVDAETI-------DRIN---------------ILQATMLAMNLAV 104
Query: 127 DTVGDAEKYQAKLSQRFP---SIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
+++G ++ RF I + K DS ++ AS++AK E M
Sbjct: 105 ESLGSTPEFLLVDGNRFRPVLPIPYQTIVKGDSKVFSIAAASVLAKTHRDELM 157
>gi|448547399|ref|ZP_21626877.1| ribonuclease HII [Haloferax sp. ATCC BAA-645]
gi|445716410|gb|ELZ68154.1| ribonuclease HII [Haloferax sp. ATCC BAA-645]
Length = 215
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAG+GPVLGPMV + + ADSK L E+REEL +L+ D +
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVRG----EPDALPDGIADSKRLSPERREELATELRERDDIS 58
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR---VLNIGILLTEVYLDTVGDAE 133
V ++P + + N + + +A V + G + +
Sbjct: 59 VGVAFVEPATIDDPETDMNLLTVRAQVDAAAAVAADADELVCDAGDVSESRF------GR 112
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
+ + L++ ++ +AD + +V ASIVAK R++
Sbjct: 113 RVREGLAEAGVPVEVRAQHRADDEHAIVGAASIVAKVERDRRVE 156
>gi|397654304|ref|YP_006494987.1| ribonuclease HII [Corynebacterium ulcerans 0102]
gi|393403260|dbj|BAM27752.1| ribonuclease HII [Corynebacterium ulcerans 0102]
Length = 240
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 4 EAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKRE 63
E L KW P + GIDEAGRG GP+ P LATL DSK L RE
Sbjct: 32 EGTLEKWGLGP-VAGIDEAGRGSCCGPITIAACILPPRPIAALATLT--DSKKLSPRMRE 88
Query: 64 ELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKIN 98
EL+ +K +V W++ I E+ A + I+
Sbjct: 89 ELYPLIK-KHAVAWSILHIPASEIDAYGIQHANIS 122
>gi|325262275|ref|ZP_08129012.1| ribonuclease HII [Clostridium sp. D5]
gi|324032107|gb|EGB93385.1| ribonuclease HII [Clostridium sp. D5]
Length = 254
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 12/98 (12%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K+ + I GIDE GRGP+ GP+V G + P + L DSK L +KREEL+++
Sbjct: 65 KYDEHTFICGIDEVGRGPLAGPVVAGAVILP----KDCEILYINDSKKLSAKKREELYDE 120
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDS 106
+ ++ +V + + P + +KIN+ + ++++
Sbjct: 121 I-MDKAVATGIGMASPARI-------DKINILQATYEA 150
>gi|261866967|ref|YP_003254889.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D11S-1]
gi|415771058|ref|ZP_11485188.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D17P-2]
gi|416073291|ref|ZP_11584179.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype b
str. SCC1398]
gi|416108138|ref|ZP_11590934.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype c
str. SCC2302]
gi|444344290|ref|ZP_21152577.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype b
str. SCC4092]
gi|444345489|ref|ZP_21153503.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype c
str. AAS4A]
gi|261412299|gb|ACX81670.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D11S-1]
gi|348004522|gb|EGY45024.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype c
str. SCC2302]
gi|348007415|gb|EGY47730.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype b
str. SCC1398]
gi|348656432|gb|EGY74047.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D17P-2]
gi|443542820|gb|ELT53115.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype c
str. AAS4A]
gi|443544445|gb|ELT54431.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype b
str. SCC4092]
Length = 199
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 30/165 (18%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I G+DE GRGP++G +V + +Q + L ADSKTL E+KR L E++K +
Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVI--LDPKQPIEGL--ADSKTLSEKKRLLLAEEIK-QKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ WA+ +P E+ LN I H S + + + ++ I V +D
Sbjct: 67 LAWALGRAEPHEID---------ELN-ILHASMLAMERAIKHLKIRPHFVLVD------- 109
Query: 135 YQAKLSQRFPSIKFVVSK---KADSLYPVVSGASIVAKRSNFERM 176
R P + ++ K D L P +S ASI+AK + + M
Sbjct: 110 -----GNRIPPNLMIPAQAVVKGDVLVPEISAASILAKVARDQEM 149
>gi|195867864|ref|ZP_03079863.1| ribonuclease HII [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
gi|195660441|gb|EDX53699.1| ribonuclease HII [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
Length = 317
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 88/176 (50%), Gaps = 20/176 (11%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQT----LATLNFADSKTLKEEKREEL 65
+ +N I+G DE G G + G G + C S +Q+ LA LN DSK L + + +E+
Sbjct: 98 YQNNQIIIGSDEVGVGDLFG----GIVVCAVSLKQSDLKFLAHLNIVDSKKLSDHQMQEI 153
Query: 66 FEDLKVNDSVGWAVDIIDPRELSAKMLNK--NKINLNEISHDSAI-GLITRVLNIGILLT 122
+E K+ + + + V +P+E + +++N+ N L I H A+ I + N I
Sbjct: 154 YE--KIKNQISYTVLSYNPKEYN-ELINQYNNAHVLKTILHYKAVQSEIVKHQNYSIFSV 210
Query: 123 EVYLDTVGDAEKY--QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
++ + +Y +A L P++ + KA+S Y V+ ASI+A R F +M
Sbjct: 211 VDAFSSLKNWNQYLQKAHLKPYEPNL---LIPKAESSYTSVALASIIA-RVMFLKM 262
>gi|374308408|ref|YP_005054839.1| ribonuclease HII [Filifactor alocis ATCC 35896]
gi|320120511|gb|EFE28779.2| ribonuclease HII [Filifactor alocis ATCC 35896]
Length = 256
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 WASNPCIM--GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE 67
W S ++ G+DEAGRGP+ GP+V C+ L DSK +KE REEL++
Sbjct: 69 WNSKGILLVGGVDEAGRGPLAGPVVAACVIMKSDS----LILGMNDSKKIKETVREELYD 124
Query: 68 DLKVNDSVGWAVDIIDPREL 87
+ + DS+ + + I E+
Sbjct: 125 KV-IQDSISFGIGIASSEEI 143
>gi|384509098|ref|YP_005685766.1| Ribonuclease HII [Corynebacterium pseudotuberculosis I19]
gi|308276686|gb|ADO26585.1| Ribonuclease HII [Corynebacterium pseudotuberculosis I19]
Length = 204
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 75/174 (43%), Gaps = 26/174 (14%)
Query: 4 EAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKRE 63
E L KW P + GIDEAGRG GP+ P LATL DSK L RE
Sbjct: 32 EGTLEKWGLGP-VAGIDEAGRGSCCGPITIAACILPSRPIAALATLT--DSKKLSSRMRE 88
Query: 64 ELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEIS-HDSAIGLITRVLNIGILLT 122
EL+ +K +V W++ +SA +++ I IS AI L+++ G +L
Sbjct: 89 ELYPLIK-KYAVAWSI-----LHISASEIDRYGIQHANISGMRRAIALLSK--QPGYVLI 140
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
DA + P I D+ ++ AS++AK+S E M
Sbjct: 141 --------DAMRVPGLTCPSLPII------GGDTAARCIAAASVLAKQSRDELM 180
>gi|451948934|ref|YP_007469529.1| ribonuclease HII [Desulfocapsa sulfexigens DSM 10523]
gi|451908282|gb|AGF79876.1| ribonuclease HII [Desulfocapsa sulfexigens DSM 10523]
Length = 233
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVN 72
P + G+DE GRGP+ GP+V + P + Q +L F DSK L +KR+ LFE L ++
Sbjct: 46 PVVAGLDEVGRGPLAGPVVAAAVILPSNCQHSL----FIDSKKLTPKKRQLLFEYLYEIP 101
Query: 73 DSVGWAV---DIIDPRELSAKMLNKNKINLNEIS 103
+G + IID + L K +NE++
Sbjct: 102 AHIGIGIVSHKIIDKINILQASLLAMKRGVNELT 135
>gi|116629569|ref|YP_814741.1| ribonuclease HII [Lactobacillus gasseri ATCC 33323]
gi|311110787|ref|ZP_07712184.1| ribonuclease HII [Lactobacillus gasseri MV-22]
gi|420147281|ref|ZP_14654557.1| Ribonuclease HII (RNase HII) [Lactobacillus gasseri CECT 5714]
gi|122273493|sp|Q043R9.1|RNH2_LACGA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|116095151|gb|ABJ60303.1| RNase HII [Lactobacillus gasseri ATCC 33323]
gi|311065941|gb|EFQ46281.1| ribonuclease HII [Lactobacillus gasseri MV-22]
gi|398401282|gb|EJN54784.1| Ribonuclease HII (RNase HII) [Lactobacillus gasseri CECT 5714]
Length = 250
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W + + G+DE GRGP+ GP+V + P ++ ++ DSK L +KR+ELF +
Sbjct: 62 WQKSQLVAGVDEVGRGPLAGPVVTAAVILPHNFD----LIDVNDSKKLSPKKRKELFPKI 117
Query: 70 ---KVNDSVGWA-VDIID 83
V+ SVG A D+ID
Sbjct: 118 LAKAVSVSVGLANNDVID 135
>gi|53711581|ref|YP_097573.1| ribonuclease HII [Bacteroides fragilis YCH46]
gi|423259374|ref|ZP_17240297.1| ribonuclease HII [Bacteroides fragilis CL07T00C01]
gi|423263654|ref|ZP_17242657.1| ribonuclease HII [Bacteroides fragilis CL07T12C05]
gi|423269868|ref|ZP_17248840.1| ribonuclease HII [Bacteroides fragilis CL05T00C42]
gi|423272678|ref|ZP_17251625.1| ribonuclease HII [Bacteroides fragilis CL05T12C13]
gi|423282457|ref|ZP_17261342.1| ribonuclease HII [Bacteroides fragilis HMW 615]
gi|81383847|sp|Q64ZN7.1|RNH2_BACFR RecName: Full=Ribonuclease HII; Short=RNase HII
gi|52214446|dbj|BAD47039.1| ribonuclease HII [Bacteroides fragilis YCH46]
gi|387776954|gb|EIK39054.1| ribonuclease HII [Bacteroides fragilis CL07T00C01]
gi|392700714|gb|EIY93876.1| ribonuclease HII [Bacteroides fragilis CL05T00C42]
gi|392707076|gb|EIZ00196.1| ribonuclease HII [Bacteroides fragilis CL07T12C05]
gi|392708592|gb|EIZ01698.1| ribonuclease HII [Bacteroides fragilis CL05T12C13]
gi|404582025|gb|EKA86720.1| ribonuclease HII [Bacteroides fragilis HMW 615]
Length = 201
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 32/156 (20%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G DEAGRG + G + + P ++ L LN DSK L E++R L E ++ D+V W
Sbjct: 14 GCDEAGRGCLAGAVYAAAVILPKDFENEL--LN--DSKQLSEKQRYALREVIE-RDAVAW 68
Query: 78 AVDIIDPRELSAKMLNKNKINLNEIS----HDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
AV I+ P E+ +KIN+ S H + L TR ++ I D
Sbjct: 69 AVGIVSPEEI-------DKINILNASFLAMHRAVDRLKTRPQHLLI-----------DGN 110
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
++ +++P I K D Y ++ ASI+AK
Sbjct: 111 RF-----KKYPDIPHTTVIKGDGKYLSIAAASILAK 141
>gi|390962065|ref|YP_006425899.1| ribonuclease HII [Thermococcus sp. CL1]
gi|390520373|gb|AFL96105.1| ribonuclease HII [Thermococcus sp. CL1]
Length = 232
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 23/162 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGPV+GPMV + L L DSK L ++RE LF+++
Sbjct: 5 LAGIDEAGRGPVIGPMVIAAVVLDEVNVPRLEELGVKDSKKLTPKRRERLFDEI------ 58
Query: 76 GWAVDIIDPR---ELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
V ++D EL ++ LNE ++ + + ++ + VY+D A
Sbjct: 59 ---VQLLDDYVILELWPGEIDSRGGTLNEFEVENFVKALN---SLKVKPDVVYIDA---A 109
Query: 133 EKYQAKLSQRFP-----SIKFVVSKKADSLYPVVSGASIVAK 169
+ +A+ + + + KAD + VS ASI+AK
Sbjct: 110 DVKEARFGEEIRKGLDFEAEIIAEHKADDKFVPVSAASILAK 151
>gi|387769245|ref|ZP_10125511.1| ribonuclease HII [Pasteurella bettyae CCUG 2042]
gi|386907201|gb|EIJ71916.1| ribonuclease HII [Pasteurella bettyae CCUG 2042]
Length = 199
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 31/166 (18%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
+ G+DE GRGP++G +V + P + + LA DSK L E+KRE+L E++K
Sbjct: 12 LVAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLA-----DSKKLSEKKREQLAEEIK-QK 65
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
++ WA+ +P E+ LN I H + + + V N+ I V +D
Sbjct: 66 ALAWALGRAEPEEID---------QLN-ILHATMLAMQRAVKNLKIQPHFVLVD------ 109
Query: 134 KYQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKRSNFERMD 177
R P K DS +S ASI+AK + M+
Sbjct: 110 ------GNRVPEFAMPAQAVVKGDSKVQEISAASIIAKVARDHEME 149
>gi|407647394|ref|YP_006811153.1| ribonuclease HII [Nocardia brasiliensis ATCC 700358]
gi|407310278|gb|AFU04179.1| ribonuclease HII [Nocardia brasiliensis ATCC 700358]
Length = 251
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 51/87 (58%), Gaps = 6/87 (6%)
Query: 4 EAALPKWASNPCIMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKR 62
EAAL + P + G+DEAGRGP GP+V CL P +Y + LA L+ DSK L E R
Sbjct: 11 EAALIRSGLGP-VAGVDEAGRGPCAGPLVVAACLLAPKAYDK-LAGLD--DSKKLTESVR 66
Query: 63 EELFEDLKVNDSVGWAVDIIDPRELSA 89
EEL+ + + S+ W V +I E+ +
Sbjct: 67 EELYPVI-LRLSLAWNVVVIPAWEIDS 92
>gi|300715410|ref|YP_003740213.1| ribonuclease HII [Erwinia billingiae Eb661]
gi|299061246|emb|CAX58355.1| Ribonuclease HII [Erwinia billingiae Eb661]
Length = 207
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 25/162 (15%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI G+DE GRGP++G +V + + ADSK L E++R L++++ V +
Sbjct: 11 CIAGVDEVGRGPLVGAVVTAAVI----LDPARPIVGLADSKKLSEKRRLALYDEI-VEKA 65
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ +++N I H + + + V + I V +D G+
Sbjct: 66 LSWSLGRAEPEEI-------DRLN---ILHATMLAMQRAVAGLHICPDFVLID--GNRCP 113
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
A PS+ V K DSL +S ASI+AK + M
Sbjct: 114 ALA-----MPSLAVV---KGDSLVREISAASIIAKVTRDREM 147
>gi|448320192|ref|ZP_21509680.1| ribonuclease HII [Natronococcus amylolyticus DSM 10524]
gi|445606598|gb|ELY60502.1| ribonuclease HII [Natronococcus amylolyticus DSM 10524]
Length = 222
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 81/165 (49%), Gaps = 24/165 (14%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC--PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
G+DEAG+GP LG M ++ P + + +A DSK L E+REEL L+ +D
Sbjct: 3 FGVDEAGKGPALGSMFAAAVHVADPDALPEGIA-----DSKRLVPERREELAATLREDDR 57
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEI---SHDSAIGLITRVLNIGILLTEVYL----D 127
+ V E++ +++ + ++N + +H AI + +++ + L D
Sbjct: 58 IAVGV-----SEITPSLIDNPETDMNSLAVRAHAEAIEEMLEAVDVSADSSAPGLCDACD 112
Query: 128 TVGDAEKYQAKLSQRF-PSIKFVVSKK--ADSLYPVVSGASIVAK 169
T DA+++ +++ P + + + AD P+V AS+VAK
Sbjct: 113 T--DADRFARRVADACEPEYELEIEAEHGADDQDPIVGAASVVAK 155
>gi|60679832|ref|YP_209976.1| ribonuclease HII [Bacteroides fragilis NCTC 9343]
gi|265764964|ref|ZP_06093239.1| ribonuclease HII [Bacteroides sp. 2_1_16]
gi|336407768|ref|ZP_08588264.1| ribonuclease HII [Bacteroides sp. 2_1_56FAA]
gi|375356671|ref|YP_005109443.1| putative ribonuclease HII [Bacteroides fragilis 638R]
gi|383116582|ref|ZP_09937330.1| ribonuclease HII [Bacteroides sp. 3_2_5]
gi|423248243|ref|ZP_17229259.1| ribonuclease HII [Bacteroides fragilis CL03T00C08]
gi|423253192|ref|ZP_17234123.1| ribonuclease HII [Bacteroides fragilis CL03T12C07]
gi|81317095|sp|Q5LIL2.1|RNH2_BACFN RecName: Full=Ribonuclease HII; Short=RNase HII
gi|60491266|emb|CAH06014.1| putative ribonuclease HII [Bacteroides fragilis NCTC 9343]
gi|251948144|gb|EES88426.1| ribonuclease HII [Bacteroides sp. 3_2_5]
gi|263254348|gb|EEZ25782.1| ribonuclease HII [Bacteroides sp. 2_1_16]
gi|301161352|emb|CBW20892.1| putative ribonuclease HII [Bacteroides fragilis 638R]
gi|335944847|gb|EGN06664.1| ribonuclease HII [Bacteroides sp. 2_1_56FAA]
gi|392657092|gb|EIY50729.1| ribonuclease HII [Bacteroides fragilis CL03T12C07]
gi|392660350|gb|EIY53964.1| ribonuclease HII [Bacteroides fragilis CL03T00C08]
Length = 201
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 32/156 (20%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G DEAGRG + G + + P ++ L LN DSK L E++R L E ++ D+V W
Sbjct: 14 GCDEAGRGCLAGAVYAAAVILPKDFENEL--LN--DSKQLSEKQRYALREVIE-RDAVAW 68
Query: 78 AVDIIDPRELSAKMLNKNKINLNEIS----HDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
AV I+ P E+ +KIN+ S H + L TR ++ I D
Sbjct: 69 AVGIVSPEEI-------DKINILNASFLAMHRAVDRLKTRPQHLLI-----------DGN 110
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
++ +++P I K D Y ++ ASI+AK
Sbjct: 111 RF-----KKYPDIPHTTVIKGDGKYLSIAAASILAK 141
>gi|288801638|ref|ZP_06407080.1| ribonuclease HII [Prevotella melaninogenica D18]
gi|288335680|gb|EFC74113.1| ribonuclease HII [Prevotella melaninogenica D18]
Length = 200
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 70/160 (43%), Gaps = 40/160 (25%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G DEAGRG + G + + P YQ L LN DSK L +KR L E+++ D++ W
Sbjct: 14 GCDEAGRGCLAGSVYAAAVILPPDYQNEL--LN--DSKKLTAKKRYALREEIE-RDAIAW 68
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG------- 130
AV I+ P E+ +KIN +LN L LD +
Sbjct: 69 AVGIVTPEEI-------DKIN---------------ILNASFLAMHRALDQLSVRPEAVI 106
Query: 131 -DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
D ++ K Q PS V K D Y ++ ASI+AK
Sbjct: 107 VDGNRF--KPYQDLPSTTIV---KGDGKYLSIAAASILAK 141
>gi|302344951|ref|YP_003813304.1| ribonuclease HII [Prevotella melaninogenica ATCC 25845]
gi|302149166|gb|ADK95428.1| ribonuclease HII [Prevotella melaninogenica ATCC 25845]
Length = 200
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 70/160 (43%), Gaps = 40/160 (25%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G DEAGRG + G + + P YQ L LN DSK L +KR L E+++ D++ W
Sbjct: 14 GCDEAGRGCLAGSVYAAAVILPPDYQNEL--LN--DSKKLTAKKRYALREEIE-RDAIAW 68
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD--------TV 129
AV I+ P E+ +KIN +LN L LD +
Sbjct: 69 AVGIVTPEEI-------DKIN---------------ILNASFLAMHRALDQLKVRPEAVI 106
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
D ++ K Q PS V K D Y ++ ASI+AK
Sbjct: 107 VDGNRF--KPYQDLPSTTIV---KGDGKYLSIAAASILAK 141
>gi|333394923|ref|ZP_08476742.1| ribonuclease HII (RNase HII) [Lactobacillus coryniformis subsp.
coryniformis KCTC 3167]
Length = 252
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 26/160 (16%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W + P I GIDE GRGP+ GP+V + P + A + DSK L KR+ L+ +
Sbjct: 64 WPNYPQIAGIDEVGRGPLAGPVVTAAVILPHDF----AVYDVNDSKQLSATKRQLLYRQI 119
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ +V ++ I D + +++N+ E + + + + + + + +D V
Sbjct: 120 -LEQAVSVSIGISD-------VATIDRVNILEA---TKLTMSQAIAGLSVPPDHLLIDAV 168
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL+ P+I K DS ++ ASIVAK
Sbjct: 169 --------KLNTDIPTISMF---KGDSHSISIAAASIVAK 197
>gi|302386482|ref|YP_003822304.1| Ribonuclease H [Clostridium saccharolyticum WM1]
gi|302197110|gb|ADL04681.1| Ribonuclease H [Clostridium saccharolyticum WM1]
Length = 213
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
++ + GIDEAGRGP+ GP+V G + P + L DSK L E++RE LFE+
Sbjct: 25 QYEDQVLVCGIDEAGRGPLAGPVVAGAVILP----RDCEILFLNDSKKLSEKRREALFEE 80
Query: 69 LKVNDSVGWAVDII 82
+ + + +AV ++
Sbjct: 81 I-MEKASAFAVGVV 93
>gi|423612054|ref|ZP_17587915.1| ribonuclease HII [Bacillus cereus VD107]
gi|401247061|gb|EJR53405.1| ribonuclease HII [Bacillus cereus VD107]
Length = 257
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++K + ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVILPEDF--YIPGLN--DSKKLSEAKRERFYDEIK-DHAI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DEINIYQATKQA---MLDAVANLSCTPEYLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL P + K D+ +S ASI+AK
Sbjct: 173 --KLPTSIPQTSII---KGDAKSVSISAASIIAK 201
>gi|307129834|ref|YP_003881850.1| ribonuclease HII [Dickeya dadantii 3937]
gi|306527363|gb|ADM97293.1| ribonuclease HII [Dickeya dadantii 3937]
Length = 198
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI G+DE GRGP++G +V + + +A L ADSKTL E++R L+++++ +
Sbjct: 12 CIAGVDEVGRGPLVGAVVTAAVI--LDPNRPIAGL--ADSKTLSEKRRLALYDEIR-EKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ +LN I H + + + V + I V +D
Sbjct: 67 LAWSLGRAEPEEID---------SLN-ILHATMLAMQRAVAGLPITPDFVLID------- 109
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKRSNFERMDI 178
R PS+ K DS +S ASI+AK + M++
Sbjct: 110 -----GNRCPSLPMPSQAVVKGDSRVAEISAASILAKVTRDREMEV 150
>gi|428176797|gb|EKX45680.1| hypothetical protein GUITHDRAFT_48118, partial [Guillardia theta
CCMP2712]
Length = 189
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+V + P ++ L + DSK + EE+RE +E L + V
Sbjct: 1 VAGVDEAGRGPLAGPVVAAAVILPAEEEEMLRGIK--DSKKMTEEEREACYETLTQSKKV 58
Query: 76 GWAVDIID 83
V +I+
Sbjct: 59 TIGVSVIE 66
>gi|336392850|ref|ZP_08574249.1| ribonuclease HII (RNase HII) [Lactobacillus coryniformis subsp.
torquens KCTC 3535]
Length = 252
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 26/160 (16%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W + P I GIDE GRGP+ GP+V + P + A + DSK L KR+ L+ +
Sbjct: 64 WPNYPQIAGIDEVGRGPLAGPVVTAAVILPHDF----AVYDVNDSKQLSATKRQLLYRQI 119
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ +V ++ + D + +++N+ E + + + + + + + +D V
Sbjct: 120 -LEQAVSVSIGVSD-------VATIDRVNILEA---TKLAMSQAIAGLSVPPDHLLIDAV 168
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL+ P+I K DS ++ ASIVAK
Sbjct: 169 --------KLNTDIPTISMF---KGDSHSISIAAASIVAK 197
>gi|448290101|ref|ZP_21481255.1| ribonuclease HII, partial [Haloferax volcanii DS2]
gi|445580103|gb|ELY34491.1| ribonuclease HII, partial [Haloferax volcanii DS2]
Length = 68
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+G+DEAG+GPVLGPMV + P + ADSK L E+REEL +L+ D +
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVRGDPDALPD-----GIADSKRLAPERREELAAELRERDDI 57
Query: 76 GWAVDIIDP 84
V ++P
Sbjct: 58 SVGVAFVEP 66
>gi|229013020|ref|ZP_04170185.1| Ribonuclease [Bacillus mycoides DSM 2048]
gi|229134645|ref|ZP_04263454.1| Ribonuclease [Bacillus cereus BDRD-ST196]
gi|229168576|ref|ZP_04296299.1| Ribonuclease [Bacillus cereus AH621]
gi|423489013|ref|ZP_17465695.1| ribonuclease HII [Bacillus cereus BtB2-4]
gi|423494738|ref|ZP_17471382.1| ribonuclease HII [Bacillus cereus CER057]
gi|423498470|ref|ZP_17475087.1| ribonuclease HII [Bacillus cereus CER074]
gi|423592167|ref|ZP_17568198.1| ribonuclease HII [Bacillus cereus VD048]
gi|423598852|ref|ZP_17574852.1| ribonuclease HII [Bacillus cereus VD078]
gi|423661323|ref|ZP_17636492.1| ribonuclease HII [Bacillus cereus VDM022]
gi|423669411|ref|ZP_17644440.1| ribonuclease HII [Bacillus cereus VDM034]
gi|423674410|ref|ZP_17649349.1| ribonuclease HII [Bacillus cereus VDM062]
gi|228614982|gb|EEK72084.1| Ribonuclease [Bacillus cereus AH621]
gi|228648691|gb|EEL04717.1| Ribonuclease [Bacillus cereus BDRD-ST196]
gi|228748274|gb|EEL98134.1| Ribonuclease [Bacillus mycoides DSM 2048]
gi|401150831|gb|EJQ58283.1| ribonuclease HII [Bacillus cereus CER057]
gi|401160519|gb|EJQ67897.1| ribonuclease HII [Bacillus cereus CER074]
gi|401232300|gb|EJR38802.1| ribonuclease HII [Bacillus cereus VD048]
gi|401237122|gb|EJR43579.1| ribonuclease HII [Bacillus cereus VD078]
gi|401298538|gb|EJS04138.1| ribonuclease HII [Bacillus cereus VDM034]
gi|401301364|gb|EJS06953.1| ribonuclease HII [Bacillus cereus VDM022]
gi|401309961|gb|EJS15294.1| ribonuclease HII [Bacillus cereus VDM062]
gi|402432261|gb|EJV64320.1| ribonuclease HII [Bacillus cereus BtB2-4]
Length = 257
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++K ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIK-EHAI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V II P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIISPQVI-------DEINIYQATKQA---MLDAVANLSCTPEYLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL P + K D+ +S ASI+AK
Sbjct: 173 --KLPTSIPQTSII---KGDAKSVSISAASIIAK 201
>gi|217076334|ref|YP_002334050.1| ribonuclease HII [Thermosipho africanus TCF52B]
gi|226736825|sp|B7IF45.1|RNH2_THEAB RecName: Full=Ribonuclease HII; Short=RNase HII
gi|217036187|gb|ACJ74709.1| ribonuclease HII [Thermosipho africanus TCF52B]
Length = 220
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 27/155 (17%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
+ G+DEAGRGP+ GP+V + + + L+ DSK L KRE+LF L++
Sbjct: 2 IVAGVDEAGRGPLFGPVVAAAVIL----NEEIDGLD--DSKKLTSRKREKLF--LEIIKK 53
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+A+ I E+ N ++ EI+ D A+ + + +N I +
Sbjct: 54 SYFAISIATADEID----KFNILHATEIAMDRALERLRKKINFDIAFVD----------- 98
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
L+ +FP F K DSL +S ASI+AK
Sbjct: 99 -GKNLNLKFP---FKCIVKGDSLVKEISAASILAK 129
>gi|448415068|ref|ZP_21577939.1| ribonuclease HII [Halosarcina pallida JCM 14848]
gi|445681186|gb|ELZ33622.1| ribonuclease HII [Halosarcina pallida JCM 14848]
Length = 224
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 19/170 (11%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
+P ++G DEAG+GPVLGPMV + DSK L +REE+ L+ +
Sbjct: 5 SPVLVGSDEAGKGPVLGPMVAAAV----RADADALPDGIDDSKRLSSARREEIAATLREH 60
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD- 131
+ V V ++P + +++ ++N ++ + + + V G EV D GD
Sbjct: 61 EGVEIGVAFVEP-----ERIDRPDTDMNALTVAAHVEAVAAVAREG---DEVVTD-AGDV 111
Query: 132 -----AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
+ + + + ++ +AD YP V AS+VAK RM
Sbjct: 112 NESRFGRRVRTGVEEAGVAVSVTAEHRADETYPHVGAASVVAKVERDARM 161
>gi|374296155|ref|YP_005046346.1| ribonuclease HII [Clostridium clariflavum DSM 19732]
gi|359825649|gb|AEV68422.1| ribonuclease HII [Clostridium clariflavum DSM 19732]
Length = 260
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+V + P + + DSK L E++RE+LF ++ +V
Sbjct: 79 IAGIDEAGRGPLAGPVVAAAVILP----ENVFINGLNDSKKLSEKQREKLFSEI-TEKAV 133
Query: 76 GWAVDIIDPRELSA-KMLNKNKINLNEISHDS 106
+ V I+D + + +LN K+ + EI+ +S
Sbjct: 134 AYEVGIVDEKIIDELNILNATKVAM-EIAVES 164
>gi|443469619|ref|ZP_21059773.1| Ribonuclease HII [Pseudomonas pseudoalcaligenes KF707]
gi|442899071|gb|ELS25602.1| Ribonuclease HII [Pseudomonas pseudoalcaligenes KF707]
Length = 200
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 29/164 (17%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
C+ G+DE GRGP+ GP+V + L DSK L E +R+ LF++++ +
Sbjct: 13 CVAGVDEVGRGPLCGPVVTAAVI----LDPARPILGLNDSKKLSEARRDALFDEIR-EKA 67
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W + + E+ +++N I H + + + V + + +D
Sbjct: 68 LAWCIARAEVEEI-------DQLN---ILHATMLAMQRAVEGLSVTPKLALID------- 110
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKRSNFERM 176
R P +K + K DS P ++ ASI+AK S M
Sbjct: 111 -----GNRCPKLKVPAAPVVKGDSQVPAIAAASILAKVSRDREM 149
>gi|423367881|ref|ZP_17345313.1| ribonuclease HII [Bacillus cereus VD142]
gi|401082742|gb|EJP91007.1| ribonuclease HII [Bacillus cereus VD142]
Length = 257
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++K ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIK-EHAI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V II P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIISPQVI-------DEINIYQATKQA---MLDAVANLSCTPEYLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL P + K D+ +S ASI+AK
Sbjct: 173 --KLPTSIPQTSII---KGDAKSVSISAASIIAK 201
>gi|346308011|ref|ZP_08850139.1| ribonuclease HII [Dorea formicigenerans 4_6_53AFAA]
gi|345904366|gb|EGX74114.1| ribonuclease HII [Dorea formicigenerans 4_6_53AFAA]
Length = 219
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
++ P I GIDE GRGP+ GP+V G + P + L DSK L E+KRE L+++
Sbjct: 32 EYKDYPYICGIDEVGRGPLAGPVVAGAVILP----KDDMILYLNDSKKLSEKKREMLYDE 87
Query: 69 LKVNDSVGWAVDIIDP 84
+ +N +V + + P
Sbjct: 88 I-MNRAVATGIGMASP 102
>gi|283768287|ref|ZP_06341199.1| ribonuclease HII [Bulleidia extructa W1219]
gi|283104679|gb|EFC06051.1| ribonuclease HII [Bulleidia extructa W1219]
Length = 200
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 10/91 (10%)
Query: 2 GSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEK 61
G+E W S+ ++GIDEAGRGP+ G + + P Y+ DSK + E+K
Sbjct: 5 GNEYEKKAWFSSKRLVGIDEAGRGPLAGSLFVAGVIFPIGYENE----EIYDSKAISEKK 60
Query: 62 REELFEDLKVNDSVGWA-----VDIIDPREL 87
RE LF+ ++ D++ + V++ID + +
Sbjct: 61 REHLFKQIQ-QDAIWFQIIEVPVEVIDEKNI 90
>gi|423511871|ref|ZP_17488402.1| ribonuclease HII [Bacillus cereus HuA2-1]
gi|402450132|gb|EJV81966.1| ribonuclease HII [Bacillus cereus HuA2-1]
Length = 257
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++K ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIK-EHAI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V II P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIISPQVI-------DEINIYQATKQA---MLDAVANLSCTPEYLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL P + K D+ +S ASI+AK
Sbjct: 173 --KLPTSIPQTSII---KGDAKSVSISAASIIAK 201
>gi|291294813|ref|YP_003506211.1| ribonuclease H [Meiothermus ruber DSM 1279]
gi|290469772|gb|ADD27191.1| Ribonuclease H [Meiothermus ruber DSM 1279]
Length = 215
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRG + GP+V + P + L F DSKTL RE L E ++ ++
Sbjct: 15 VAGVDEAGRGALAGPVVAAAVILPPPKEPAL--YPFRDSKTLTPRAREHLAEQVRAV-AL 71
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRV-LNIGILLTEVYLDTVGDAEK 134
W V + E+ +++ + +H +A + ++ ++ LLT+ YL + ++
Sbjct: 72 AWGVGWAEVAEI-------DRLGILRATHLAAARALEQLKVSPEALLTD-YLRLEQEWQQ 123
Query: 135 YQAKLSQRFPSIKFV-VSKKADSLYPVVSGASIVAK 169
Y R + + KAD P V+ ASI+AK
Sbjct: 124 YLRNNPSRPDAPHLLRAPPKADRHSPTVAAASILAK 159
>gi|433625062|ref|YP_007258692.1| Ribonuclease HII [Mycoplasma cynos C142]
gi|429535088|emb|CCP24590.1| Ribonuclease HII [Mycoplasma cynos C142]
Length = 199
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
N I G DE GRG V GP+V C+ P Y+ DSK L +KR ELFE +K
Sbjct: 11 NKLIAGCDEVGRGCVAGPLVAACVIFPIDYKNDFIN----DSKKLTSKKRNELFEQIK-K 65
Query: 73 DSVGWAV 79
D++ + +
Sbjct: 66 DALDYCI 72
>gi|166031980|ref|ZP_02234809.1| hypothetical protein DORFOR_01682 [Dorea formicigenerans ATCC
27755]
gi|166028433|gb|EDR47190.1| ribonuclease HII [Dorea formicigenerans ATCC 27755]
Length = 219
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
++ P I GIDE GRGP+ GP+V G + P + L DSK L E+KRE L+++
Sbjct: 32 EYKDYPYICGIDEVGRGPLAGPVVAGAVILP----KDDMILYLNDSKKLSEKKREMLYDE 87
Query: 69 LKVNDSVGWAVDIIDP 84
+ +N +V + + P
Sbjct: 88 I-MNRAVATGIGMASP 102
>gi|408406045|ref|YP_006864029.1| ribonuclease HII [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408366641|gb|AFU60371.1| ribonuclease HII [Candidatus Nitrososphaera gargensis Ga9.2]
Length = 225
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 13/157 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF-EDLKVNDS 74
+ G+DEAGRG ++GP+V + S L + DSK L R LF + +K+ DS
Sbjct: 13 VGGVDEAGRGSIIGPLVVAGVSIKESKVALLTEMGVRDSKALTPRARARLFGQIMKIADS 72
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAE 133
V + ++P E+ + ++L ++ A + + +IG EVY+D + +
Sbjct: 73 V--CIRKVNPVEVD------DSVSLRALNRLEARVMAAVINDIG--ADEVYVDCCDINPD 122
Query: 134 KYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAK 169
+Y+ + Q S K AD VVS ASI+AK
Sbjct: 123 RYKDYIGQHLKCSPKVHSIHHADVTNVVVSAASIIAK 159
>gi|350561354|ref|ZP_08930193.1| Ribonuclease H [Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349781461|gb|EGZ35769.1| Ribonuclease H [Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 214
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 74/177 (41%), Gaps = 36/177 (20%)
Query: 1 MGSEAALPK-----WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSK 55
+GS +P+ W + G+DE GRGP+ GP+V + P Y A DSK
Sbjct: 3 VGSAGFMPRQQDDNWIAGEHCAGVDEVGRGPLAGPVVAAAVILPAGY----ALAGLTDSK 58
Query: 56 TLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVL 115
L +RE L E L+ + GWA+ E+ A LN I H + + + +L
Sbjct: 59 RLSARRREALAEVLRA-EVEGWALGSASAAEIDA--LN--------IHHATLLAMRRALL 107
Query: 116 NIGILLTEVYLDTVGDAEKYQAKLSQRF-PSIKFVVSK--KADSLYPVVSGASIVAK 169
+ +V++D RF P + + D P +S AS++AK
Sbjct: 108 ALPRPPQQVWVDG-------------RFVPEGPWSATPVIGGDGRVPAISAASVLAK 151
>gi|255067201|ref|ZP_05319056.1| ribonuclease HII [Neisseria sicca ATCC 29256]
gi|255048569|gb|EET44033.1| ribonuclease HII [Neisseria sicca ATCC 29256]
Length = 197
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 30/164 (18%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP++G + + P SY DSK L E+KR+ L +K ++
Sbjct: 7 IAGVDEAGRGPLVGSVFAAAVILPPSYHLP----GLTDSKKLSEKKRDTLAVLIK-EQAL 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W V DP+E+ LN I H + + + V + I +V++D
Sbjct: 62 AWCVAQADPQEI---------FELN-ILHATMLAMSRAVHGLAIKPDKVFID-------- 103
Query: 136 QAKLSQRFPSIKFVVSK---KADSLYPVVSGASIVAKRSNFERM 176
R P V ++ K DS +S AS++AK + M
Sbjct: 104 ----GNRVPKALGVDAEAVVKGDSKIMEISAASVLAKTARDAEM 143
>gi|448566780|ref|ZP_21637035.1| ribonuclease HII [Haloferax prahovense DSM 18310]
gi|445713369|gb|ELZ65146.1| ribonuclease HII [Haloferax prahovense DSM 18310]
Length = 215
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 15/165 (9%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+G+DEAG+GPVLGPMV + P + + ADSK L E+REEL L+ D V
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVRGDPDALPDGI-----ADSKRLAPERREELAAKLRDRDDV 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR---VLNIGILLTEVYLDTVGDA 132
V ++P + N N + + +A + V + G + +
Sbjct: 58 EVGVAFVEPETIDDPETNMNLLTVRAQVEAAAEVAVDADELVCDAGDVSESRF------G 111
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
+ + +++ ++ +AD + +V ASIVAK R++
Sbjct: 112 RRVREGVAEAGVEVEVHAQHRADDEHAIVGAASIVAKVERDRRVE 156
>gi|313125351|ref|YP_004035615.1| rnase hii [Halogeometricum borinquense DSM 11551]
gi|448287053|ref|ZP_21478269.1| ribonuclease HII [Halogeometricum borinquense DSM 11551]
gi|312291716|gb|ADQ66176.1| RNase HII [Halogeometricum borinquense DSM 11551]
gi|445572799|gb|ELY27329.1| ribonuclease HII [Halogeometricum borinquense DSM 11551]
Length = 224
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 65/163 (39%), Gaps = 19/163 (11%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
+P +G DEAG+GPVLGPMV + DSK L +REE+ + L+
Sbjct: 5 SPVRIGSDEAGKGPVLGPMVAAAV----RAPADALPDGIDDSKRLTSAQREEIDQTLRGR 60
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D V V IDP + + N + + A EV D GD
Sbjct: 61 DDVTVGVATIDPVRIDDPTTDMNSLTVAAHVAAVAAVAQD--------ADEVVTD-AGDV 111
Query: 133 E------KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+ + + + + V +AD YP V AS+VAK
Sbjct: 112 DESRFGRRVRTGVGDEGTDVTVVSEHRADETYPHVGAASVVAK 154
>gi|423483427|ref|ZP_17460117.1| ribonuclease HII [Bacillus cereus BAG6X1-2]
gi|401140978|gb|EJQ48533.1| ribonuclease HII [Bacillus cereus BAG6X1-2]
Length = 257
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++K ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIK-EHAI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DEINIYQATKQA---MLDAVANLSCTPQYLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL P + K D+ +S ASI+AK
Sbjct: 173 --KLPTSIPQTSII---KGDAKSVSISAASIIAK 201
>gi|345019908|ref|ZP_08783521.1| ribonuclease H [Ornithinibacillus scapharcae TW25]
Length = 190
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+V + P +++ L DSK L + KREE ++ + V ++
Sbjct: 6 IAGIDEAGRGPLAGPVVAAAVILPDNFK----LLGLNDSKQLNKSKREEYYQ-IIVEQAI 60
Query: 76 GWAVDIID 83
+ + I++
Sbjct: 61 SYGISIVE 68
>gi|253687351|ref|YP_003016541.1| Ribonuclease H [Pectobacterium carotovorum subsp. carotovorum PC1]
gi|259494070|sp|C6DAJ7.1|RNH2_PECCP RecName: Full=Ribonuclease HII; Short=RNase HII
gi|251753929|gb|ACT12005.1| Ribonuclease H [Pectobacterium carotovorum subsp. carotovorum PC1]
Length = 198
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 29/164 (17%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI G+DE GRGP++G +V + T + ADSK L E++R L++++K +
Sbjct: 12 CIAGVDEVGRGPLVGAVVTAAVIL----DPTRPIVGLADSKQLSEKRRLALYDEIK-EKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ +++N I H + + + V + ++ V +D
Sbjct: 67 LAWSLGRAEPEEI-------DQLN---ILHATMLAMQRAVAGLAVVPDFVLID------- 109
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKRSNFERM 176
R P++ K DS +S ASI+AK + M
Sbjct: 110 -----GNRCPALPMPSQAVVKGDSRVAEISAASIMAKVTRDREM 148
>gi|423615902|ref|ZP_17591736.1| ribonuclease HII [Bacillus cereus VD115]
gi|401260439|gb|EJR66612.1| ribonuclease HII [Bacillus cereus VD115]
Length = 257
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + DSK L E KRE ++++K ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPDDFH----IPGLDDSKKLSEAKRERFYDEIKAQ-AI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DEINIYQATKQA---MLDAVANLSCTPQYLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL P + K D+ +S ASI+AK
Sbjct: 173 --KLPTSIPQTSII---KGDAKSVSISAASIIAK 201
>gi|448394694|ref|ZP_21568366.1| ribonuclease HII [Haloterrigena salina JCM 13891]
gi|445662155|gb|ELZ14928.1| ribonuclease HII [Haloterrigena salina JCM 13891]
Length = 247
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATL--NFADSKTLKEEKREELFEDLKVNDS 74
G+DEAG+GP LG M ++C + A L ADSK L E+REEL ++ +D
Sbjct: 3 FGVDEAGKGPALGSMFAAAVHC-----EDPAALPDGIADSKRLAPERREELAATIREDDR 57
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIG 109
V V I P + + N + + +H AIG
Sbjct: 58 VRVGVAEISPARIDDPETDMNSLAVT--AHAEAIG 90
>gi|85860168|ref|YP_462370.1| ribonuclease HII [Syntrophus aciditrophicus SB]
gi|97189377|sp|Q2LVU5.1|RNH2_SYNAS RecName: Full=Ribonuclease HII; Short=RNase HII
gi|85723259|gb|ABC78202.1| ribonuclease HII [Syntrophus aciditrophicus SB]
Length = 212
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I G+DEAGRGP+ GP+V + P Y T DSK L KRE+L+E +K D+
Sbjct: 18 VIAGVDEAGRGPLAGPVVAAAVILPHGYSHPEIT----DSKKLSAGKREKLYEVIK-RDA 72
Query: 75 VGWAVDIID 83
+ V +++
Sbjct: 73 LAIGVGVVE 81
>gi|337286015|ref|YP_004625488.1| Ribonuclease H [Thermodesulfatator indicus DSM 15286]
gi|335358843|gb|AEH44524.1| Ribonuclease H [Thermodesulfatator indicus DSM 15286]
Length = 235
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRG + GP+V + P + + ADSK L EKREEL+ L +++
Sbjct: 36 IAGVDEVGRGALAGPVVAAAVILPQDFDHP----DLADSKCLTPEKREELYR-LITQEAI 90
Query: 76 GWAVDIID 83
WAV I+
Sbjct: 91 AWAVAQIE 98
>gi|384515955|ref|YP_005711047.1| Ribonuclease HII [Corynebacterium ulcerans 809]
gi|334697156|gb|AEG81953.1| Ribonuclease HII [Corynebacterium ulcerans 809]
Length = 240
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 4 EAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKRE 63
E L KW P + GIDEAGRG GP+ P LATL DSK L RE
Sbjct: 32 EGTLEKWGLGP-VAGIDEAGRGSCCGPITIAACILPPRPIAALATLT--DSKKLSPRMRE 88
Query: 64 ELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKIN 98
EL+ +K +V W++ I E+ A + I+
Sbjct: 89 ELYPLIK-KHAVSWSILHIPASEIDAYGIQHANIS 122
>gi|449122469|ref|ZP_21758802.1| ribonuclease HII [Treponema denticola MYR-T]
gi|448947459|gb|EMB28303.1| ribonuclease HII [Treponema denticola MYR-T]
Length = 198
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 8/65 (12%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREE----LFEDLKVND 73
GIDEAGRGP+ GP+ + P S+ ++ DSK L E+KREE ++ D V
Sbjct: 4 GIDEAGRGPLAGPVTAAAVILPSSFDFSI----LKDSKKLSEKKREEVRKTIYADPNVLW 59
Query: 74 SVGWA 78
S+GWA
Sbjct: 60 SIGWA 64
>gi|404379953|ref|ZP_10985000.1| ribonuclease HII [Simonsiella muelleri ATCC 29453]
gi|294482633|gb|EFG30323.1| ribonuclease HII [Simonsiella muelleri ATCC 29453]
Length = 201
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGP++G + + P Y + DSK L E+KR++L E +K N ++ W
Sbjct: 12 GVDEAGRGPLVGSVFAAAVILPAHYDLP----DLTDSKKLSEKKRDKLAELIK-NQAIAW 66
Query: 78 AVDIIDPREL 87
++ P E+
Sbjct: 67 SIASASPAEI 76
>gi|337291043|ref|YP_004630064.1| ribonuclease HII [Corynebacterium ulcerans BR-AD22]
gi|334699349|gb|AEG84145.1| Ribonuclease HII [Corynebacterium ulcerans BR-AD22]
Length = 240
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 4 EAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKRE 63
E L KW P + GIDEAGRG GP+ P LATL DSK L RE
Sbjct: 32 EGTLEKWGLGP-VAGIDEAGRGSCCGPITIAACILPPRPIVALATLT--DSKKLSPRMRE 88
Query: 64 ELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKIN 98
EL+ +K +V W++ I E+ A + I+
Sbjct: 89 ELYPLIK-KHAVAWSILHIPASEIDAYGIQHANIS 122
>gi|255513539|gb|EET89805.1| ribonuclease HII [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 212
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 75/151 (49%), Gaps = 32/151 (21%)
Query: 41 SYQQTLATLNFADSKTLKEEKREELFEDLK-VNDSVGWAVDIIDPRELSAKMLNKNKINL 99
S ++ A + DSK L ++RE LF+ + ++D++ AVD I P E++ M NKI+L
Sbjct: 7 SNERKFAEIGVRDSKMLSRKRRELLFKSINSISDAI--AVDKITPAEINQAM--SNKISL 62
Query: 100 NEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFP--------------- 144
NE+ AI + + VYLD+ + Q K RF
Sbjct: 63 NELE---AIRFAKLFDQLKEDIGTVYLDS---PDVIQEKFGIRFKMSSGKPLKVIGLKQK 116
Query: 145 ---SIKF--VVSK-KADSLYPVVSGASIVAK 169
IKF V+S+ KADS YPVVS ASI+AK
Sbjct: 117 AQKGIKFTKVISEHKADSKYPVVSAASIIAK 147
>gi|416159282|ref|ZP_11605747.1| ribonuclease HII [Neisseria meningitidis N1568]
gi|433472573|ref|ZP_20429943.1| ribonuclease HII family protein [Neisseria meningitidis 97021]
gi|433480999|ref|ZP_20438271.1| ribonuclease HII family protein [Neisseria meningitidis 2006087]
gi|433483121|ref|ZP_20440359.1| ribonuclease HII family protein [Neisseria meningitidis 2002038]
gi|433485221|ref|ZP_20442427.1| ribonuclease HII family protein [Neisseria meningitidis 97014]
gi|325129110|gb|EGC51959.1| ribonuclease HII [Neisseria meningitidis N1568]
gi|432212457|gb|ELK68395.1| ribonuclease HII family protein [Neisseria meningitidis 97021]
gi|432219352|gb|ELK75199.1| ribonuclease HII family protein [Neisseria meningitidis 2006087]
gi|432223567|gb|ELK79347.1| ribonuclease HII family protein [Neisseria meningitidis 2002038]
gi|432224681|gb|ELK80444.1| ribonuclease HII family protein [Neisseria meningitidis 97014]
Length = 194
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 69/157 (43%), Gaps = 36/157 (22%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGP++G + + P +T DSK L E+KR+ L E +K N +V W
Sbjct: 7 GVDEAGRGPLVGSVFAAAVILP----ETFDLPGLTDSKKLSEKKRDALAEMIK-NQAVAW 61
Query: 78 AVDIIDPRE------LSAKML------------------NKNKI--NLNEISHDSAIGLI 111
V P E L A ML + N+I +LN I ++ +
Sbjct: 62 HVAAATPEEIASLNILHATMLAMKRAVDGLAVRPERIFIDGNRIPEHLN-IPAEAVVKGD 120
Query: 112 TRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKF 148
++++ I V T DAE Y L+QR P F
Sbjct: 121 SKIIEISA--ASVLAKTARDAEMY--ALAQRHPQYGF 153
>gi|326693008|ref|ZP_08230013.1| ribonuclease HII [Leuconostoc argentinum KCTC 3773]
Length = 258
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 9 KWASN-PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE 67
+WA + G+DE GRGP+ GP+V + P + A L+ DSK L E+ RE+LF+
Sbjct: 65 QWAQGLSHVAGVDEVGRGPLAGPVVAAAVILPHDF----AELDVIDSKQLSEKMREQLFD 120
>gi|289434557|ref|YP_003464429.1| Ribonuclease HII [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|289170801|emb|CBH27343.1| rnhB [Listeria seeligeri serovar 1/2b str. SLCC3954]
Length = 261
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI G+DE GRGP+ GP+V + P + + + DSK L E KRE LFE L +
Sbjct: 72 CIAGVDEVGRGPLAGPVVAAAVILP----EDFSVVGINDSKQLSELKRETLFE-LIQQQA 126
Query: 75 VGWAVDIID 83
+ V II+
Sbjct: 127 IAVGVGIIE 135
>gi|389792822|ref|ZP_10196004.1| ribonuclease HII [Rhodanobacter fulvus Jip2]
gi|388435686|gb|EIL92583.1| ribonuclease HII [Rhodanobacter fulvus Jip2]
Length = 219
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 24/157 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+ + S + + L+ DSK L E +RE L+ + + ++
Sbjct: 31 VAGVDEAGRGPLAGPLAVAAVILDPS--RPIKALD--DSKKLTEARREALYPQI-IERAL 85
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W V M+ ++I+ I H + G+ V + ++ E ++D G+
Sbjct: 86 AWCV----------VMIEVDEIDRLNIFHATMAGMSRAVAGLSVVAQEAFID--GN---- 129
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSN 172
+L + P + D+ P +S ASI+AK S
Sbjct: 130 --QLPRDLPCPGRAII-GGDARVPAISAASILAKVSR 163
>gi|229061440|ref|ZP_04198785.1| Ribonuclease [Bacillus cereus AH603]
gi|423558600|ref|ZP_17534902.1| ribonuclease HII [Bacillus cereus MC67]
gi|228717863|gb|EEL69511.1| Ribonuclease [Bacillus cereus AH603]
gi|401191868|gb|EJQ98890.1| ribonuclease HII [Bacillus cereus MC67]
Length = 257
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++K ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIK-EHAI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DEINIYQATKQA---MLDAVANLSCTPEYLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL P + K D+ +S ASI+AK
Sbjct: 173 --KLPTSIPQTSII---KGDAKSVSISAASIIAK 201
>gi|423470051|ref|ZP_17446795.1| ribonuclease HII [Bacillus cereus BAG6O-2]
gi|402437303|gb|EJV69327.1| ribonuclease HII [Bacillus cereus BAG6O-2]
Length = 257
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++K ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIK-EHAI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DEINIYQATKQA---MLDAVANLSCTPEYLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL P + K D+ +S ASI+AK
Sbjct: 173 --KLPTSIPQTSII---KGDAKSVSISAASIIAK 201
>gi|347534421|ref|YP_004841091.1| ribonuclease HII [Lactobacillus sanfranciscensis TMW 1.1304]
gi|345504477|gb|AEN99159.1| Ribonuclease HII [Lactobacillus sanfranciscensis TMW 1.1304]
Length = 254
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I GIDE GRGP+ GP+V + P ++ L DSK L ++KR EL E +K +
Sbjct: 70 LIAGIDEVGRGPLAGPVVAAAVILPHDFK----ILEVNDSKKLTDQKRRELVEIIK-EQA 124
Query: 75 VGWAVDIID 83
+ +A +ID
Sbjct: 125 ISYAYAVID 133
>gi|218264672|ref|ZP_03478435.1| hypothetical protein PRABACTJOHN_04144 [Parabacteroides johnsonii
DSM 18315]
gi|423341089|ref|ZP_17318804.1| ribonuclease HII [Parabacteroides johnsonii CL02T12C29]
gi|218221859|gb|EEC94509.1| hypothetical protein PRABACTJOHN_04144 [Parabacteroides johnsonii
DSM 18315]
gi|409222589|gb|EKN15529.1| ribonuclease HII [Parabacteroides johnsonii CL02T12C29]
Length = 199
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 32/175 (18%)
Query: 7 LPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF 66
LP +N G DEAGRG + GP+ + P + + DSK L E+KR L
Sbjct: 3 LPYLEANRIEAGCDEAGRGCLAGPVYAAAVILPPDFHNE----DLNDSKQLSEKKRYALR 58
Query: 67 EDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEIS----HDSAIGLITRVLNIGILLT 122
++ +++ WAV I+ P E+ ++IN+ + S H + GL + ++ I
Sbjct: 59 PIIE-QEAIAWAVGIVTPEEI-------DRINILKASFLAMHRAIDGLKVKPEHLLI--- 107
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
D ++ +P +K K D Y ++ ASI+AK + M+
Sbjct: 108 --------DGNRFTP-----YPGVKHTTVVKGDGKYLSIAAASILAKTYRDDYMN 149
>gi|42527055|ref|NP_972153.1| ribonuclease HII [Treponema denticola ATCC 35405]
gi|81412195|sp|Q73MG1.1|RNH2_TREDE RecName: Full=Ribonuclease HII; Short=RNase HII
gi|41817479|gb|AAS12064.1| ribonuclease HII [Treponema denticola ATCC 35405]
Length = 198
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGP+ GP+ + P S+ ++ DSK L E+KREE+ + + + +V W
Sbjct: 4 GIDEAGRGPLAGPVTAAAVILPSSFDFSI----LKDSKKLTEKKREEVRKTIYADPNVIW 59
Query: 78 AV 79
A+
Sbjct: 60 AI 61
>gi|423452862|ref|ZP_17429715.1| ribonuclease HII [Bacillus cereus BAG5X1-1]
gi|423522333|ref|ZP_17498806.1| ribonuclease HII [Bacillus cereus HuA4-10]
gi|401139421|gb|EJQ46983.1| ribonuclease HII [Bacillus cereus BAG5X1-1]
gi|401175027|gb|EJQ82230.1| ribonuclease HII [Bacillus cereus HuA4-10]
Length = 257
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++K ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIK-EHAI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DEINIYQATKQA---MLDAVANLSCTPEYLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL P + K D+ +S ASI+AK
Sbjct: 173 --KLPTSIPQTSII---KGDAKSVSISAASIIAK 201
>gi|386714316|ref|YP_006180639.1| ribonuclease HII [Halobacillus halophilus DSM 2266]
gi|384073872|emb|CCG45365.1| ribonuclease HII [Halobacillus halophilus DSM 2266]
Length = 254
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 11/131 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+V + P Y DSK + KREE F+ LK +
Sbjct: 73 IAGIDEAGRGPLAGPVVAAAVILPEDY----YLEGLYDSKKIPLAKREEFFQSLKAHADC 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
G V I+ E+ N +++ A+ +T+V +L+ +YL+ + Y
Sbjct: 129 G--VGIVSNEEID----QHNIYQATKLAMKRAVMDLTQVPE-HLLIDAMYLEESEVPQTY 181
Query: 136 QAKLSQRFPSI 146
K QR SI
Sbjct: 182 LVKGDQRSVSI 192
>gi|300858737|ref|YP_003783720.1| ribonuclease HII [Corynebacterium pseudotuberculosis FRC41]
gi|375288921|ref|YP_005123462.1| ribonuclease HII [Corynebacterium pseudotuberculosis 3/99-5]
gi|383314497|ref|YP_005375352.1| Ribonuclease HII [Corynebacterium pseudotuberculosis P54B96]
gi|384504914|ref|YP_005681584.1| Ribonuclease HII [Corynebacterium pseudotuberculosis 1002]
gi|384507010|ref|YP_005683679.1| Ribonuclease HII [Corynebacterium pseudotuberculosis C231]
gi|384511189|ref|YP_005690767.1| Ribonuclease HII [Corynebacterium pseudotuberculosis PAT10]
gi|385807799|ref|YP_005844196.1| Ribonuclease HII [Corynebacterium pseudotuberculosis 267]
gi|387136839|ref|YP_005692819.1| ribonuclease HII [Corynebacterium pseudotuberculosis 42/02-A]
gi|300686191|gb|ADK29113.1| Ribonuclease HII [Corynebacterium pseudotuberculosis FRC41]
gi|302206444|gb|ADL10786.1| Ribonuclease HII [Corynebacterium pseudotuberculosis C231]
gi|302331000|gb|ADL21194.1| Ribonuclease HII [Corynebacterium pseudotuberculosis 1002]
gi|341825128|gb|AEK92649.1| Ribonuclease HII [Corynebacterium pseudotuberculosis PAT10]
gi|348607284|gb|AEP70557.1| Ribonuclease HII [Corynebacterium pseudotuberculosis 42/02-A]
gi|371576210|gb|AEX39813.1| Ribonuclease HII [Corynebacterium pseudotuberculosis 3/99-5]
gi|380869998|gb|AFF22472.1| Ribonuclease HII [Corynebacterium pseudotuberculosis P54B96]
gi|383805192|gb|AFH52271.1| Ribonuclease HII [Corynebacterium pseudotuberculosis 267]
Length = 240
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 75/174 (43%), Gaps = 26/174 (14%)
Query: 4 EAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKRE 63
E L KW P + GIDEAGRG GP+ P LATL DSK L RE
Sbjct: 32 EGTLEKWGLGP-VAGIDEAGRGSCCGPITIAACILPSRPIAALATLT--DSKKLSSRMRE 88
Query: 64 ELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISH-DSAIGLITRVLNIGILLT 122
EL+ +K +V W++ +SA +++ I IS AI L+++ G +L
Sbjct: 89 ELYPLIK-KYAVAWSI-----LHISASEIDRYGIQHANISGMRRAIALLSK--QPGYVLI 140
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
DA + P I D+ ++ AS++AK+S E M
Sbjct: 141 --------DAMRVPGLTCPSLPII------GGDTAARCIAAASVLAKQSRDELM 180
>gi|161528901|ref|YP_001582727.1| ribonuclease HII [Nitrosopumilus maritimus SCM1]
gi|160340202|gb|ABX13289.1| ribonuclease HII [Nitrosopumilus maritimus SCM1]
Length = 205
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 81/157 (51%), Gaps = 14/157 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL--KVND 73
I G+D+AGRG +LGP+V + + L++L DSK L + RE L++ + V+D
Sbjct: 3 ICGVDDAGRGSMLGPLVISGISINKKNLRKLSSLGVKDSKKLSPKSRELLYKQIIELVDD 62
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DA 132
+ + I PR + A + K LNE+ A + VL + + Y+D+ +
Sbjct: 63 ---YYIAKITPRSIDASV---KKHGLNEL---EAKYMAKVVLKLDPDTS--YVDSCDVNP 111
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+++ ++S+ + K ADS + VVS ASI+AK
Sbjct: 112 KRFGKEISKLSDNHKIKSYHHADSRFVVVSAASIIAK 148
>gi|419798519|ref|ZP_14323924.1| ribonuclease HII [Neisseria sicca VK64]
gi|385694441|gb|EIG25044.1| ribonuclease HII [Neisseria sicca VK64]
Length = 197
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 68/158 (43%), Gaps = 34/158 (21%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP++G + + P SY DSK L E+KR+ L +K ++
Sbjct: 7 IAGVDEAGRGPLVGSVFAAAVILPPSYHLP----GLTDSKKLSEKKRDTLAVLIK-EQAL 61
Query: 76 GWAVDIIDPRE------LSAKML-------------NKNKINLNEISHDSAIGLITRVLN 116
W V DP+E L A ML +K I+ N + D +G+ +
Sbjct: 62 AWCVAQADPQEIFELNILHATMLAMSRAVHGLAIKPDKVFIDGNRVPKD--LGVDAEAVV 119
Query: 117 IG------ILLTEVYLDTVGDAEKYQAKLSQRFPSIKF 148
G I V T DAE Y L++R+P F
Sbjct: 120 KGDSKIMEISAASVLAKTARDAEMY--ALAERYPQYGF 155
>gi|163856833|ref|YP_001631131.1| ribonuclease HII [Bordetella petrii DSM 12804]
gi|163260561|emb|CAP42863.1| rnhB [Bordetella petrii]
Length = 187
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 29/159 (18%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ G G ADSK L E+REEL ++ ++
Sbjct: 1 MAGVDEAGRGPLAG----GVYAAAVILDPGRPVDGLADSKVLTAERREELAAHIQ-ERAL 55
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W V SA +L + +N +L +L + +D +G A +
Sbjct: 56 AWCV-------ASATVLEIDTLN---------------ILRATLLAMQRAVDGLGQAPQV 93
Query: 136 QAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKRSN 172
+ P+++ V K D+L P +S ASI+AK +
Sbjct: 94 AMVDGNQAPTLRCTVQTVIKGDALVPAISAASILAKTAR 132
>gi|149194772|ref|ZP_01871867.1| Ribonuclease H [Caminibacter mediatlanticus TB-2]
gi|149135195|gb|EDM23676.1| Ribonuclease H [Caminibacter mediatlanticus TB-2]
Length = 192
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 16 IMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNF---ADSKTLKEEKREELFEDLKV 71
I GIDEAGRGP+ GP+V G ++ + + ++ F DSK L +KREELFE +K
Sbjct: 3 ICGIDEAGRGPIAGPLVMAGVMFLMENGKWKMSNEYFEKLTDSKKLSPKKREELFEVIKE 62
Query: 72 NDSVGWAVDIIDPRELSAKMLN-KNKINLNEI 102
N + + ID + K L+ K LNEI
Sbjct: 63 NSI--YHIVFIDNETIDKKGLSFAIKFGLNEI 92
>gi|374632053|ref|ZP_09704427.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Metallosphaera
yellowstonensis MK1]
gi|373525883|gb|EHP70663.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Metallosphaera
yellowstonensis MK1]
Length = 212
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 74/158 (46%), Gaps = 22/158 (13%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRG ++GPMV + L + DSK L ++REELF L + +S
Sbjct: 3 LGIDEAGRGCLIGPMVVAGVVLSEKGMGRLRAVGVKDSKKLTRKRREELFH-LILEESEA 61
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD----- 131
A+ P E+ NLNE+++ + + R L+ + V +D VG
Sbjct: 62 VAIAKALPDEIDTN-------NLNELTYRKVLE-VMRALS-AFPIDTVTVDRVGKEVEVI 112
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E Y+ L P++ + AD + S ASIVAK
Sbjct: 113 EEIYRLGLR---PNVVY----HADENFLEASAASIVAK 143
>gi|340361307|ref|ZP_08683736.1| ribonuclease HII [Neisseria macacae ATCC 33926]
gi|339888684|gb|EGQ78118.1| ribonuclease HII [Neisseria macacae ATCC 33926]
Length = 197
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 68/158 (43%), Gaps = 34/158 (21%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP++G + + P SY DSK L E+KR+ L +K ++
Sbjct: 7 IAGVDEAGRGPLVGSVFAAAVILPPSYHLP----GLTDSKKLSEKKRDTLAVLIK-EQAL 61
Query: 76 GWAVDIIDPRE------LSAKML-------------NKNKINLNEISHDSAIGLITRVLN 116
W V DP+E L A ML +K I+ N + D +G+ +
Sbjct: 62 AWCVAQADPQEIFELNILHATMLAMSRAIHGVAIKPDKVFIDGNRVPKD--LGVDAEAVV 119
Query: 117 IG------ILLTEVYLDTVGDAEKYQAKLSQRFPSIKF 148
G I V T DAE Y L++R+P F
Sbjct: 120 KGDSKIMEISAASVLAKTARDAEMY--ALAERYPQYGF 155
>gi|218767115|ref|YP_002341627.1| ribonuclease HII [Neisseria meningitidis Z2491]
gi|385338908|ref|YP_005892781.1| ribonuclease HII (RNase HII) [Neisseria meningitidis WUE 2594]
gi|421549753|ref|ZP_15995763.1| ribonuclease HII [Neisseria meningitidis 69166]
gi|421553942|ref|ZP_15999893.1| ribonuclease HII [Neisseria meningitidis 98008]
gi|433470384|ref|ZP_20427784.1| ribonuclease HII family protein [Neisseria meningitidis 68094]
gi|433474668|ref|ZP_20432016.1| ribonuclease HII family protein [Neisseria meningitidis 88050]
gi|433476771|ref|ZP_20434099.1| ribonuclease HII family protein [Neisseria meningitidis 70012]
gi|433478971|ref|ZP_20436270.1| ribonuclease HII family protein [Neisseria meningitidis 63041]
gi|433512552|ref|ZP_20469354.1| ribonuclease HII family protein [Neisseria meningitidis 63049]
gi|433514682|ref|ZP_20471458.1| ribonuclease HII family protein [Neisseria meningitidis 2004090]
gi|433516779|ref|ZP_20473533.1| ribonuclease HII family protein [Neisseria meningitidis 96023]
gi|433518972|ref|ZP_20475699.1| ribonuclease HII family protein [Neisseria meningitidis 65014]
gi|433520981|ref|ZP_20477683.1| ribonuclease HII family protein [Neisseria meningitidis 61103]
gi|433523049|ref|ZP_20479722.1| ribonuclease HII family protein [Neisseria meningitidis 97020]
gi|433525278|ref|ZP_20481924.1| ribonuclease HII family protein [Neisseria meningitidis 69096]
gi|433527356|ref|ZP_20483969.1| ribonuclease HII family protein [Neisseria meningitidis NM3652]
gi|433529447|ref|ZP_20486047.1| ribonuclease HII family protein [Neisseria meningitidis NM3642]
gi|433531569|ref|ZP_20488138.1| ribonuclease HII family protein [Neisseria meningitidis 2007056]
gi|433533587|ref|ZP_20490136.1| ribonuclease HII family protein [Neisseria meningitidis 2001212]
gi|433537955|ref|ZP_20494442.1| ribonuclease HII family protein [Neisseria meningitidis 70030]
gi|433540127|ref|ZP_20496584.1| ribonuclease HII family protein [Neisseria meningitidis 63006]
gi|11387099|sp|Q9JX40.1|RNH2_NEIMA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|121051123|emb|CAM07394.1| ribonuclease HII [Neisseria meningitidis Z2491]
gi|319411322|emb|CBY91733.1| ribonuclease HII (RNase HII) [Neisseria meningitidis WUE 2594]
gi|402331704|gb|EJU67036.1| ribonuclease HII [Neisseria meningitidis 69166]
gi|402333978|gb|EJU69273.1| ribonuclease HII [Neisseria meningitidis 98008]
gi|432211817|gb|ELK67761.1| ribonuclease HII family protein [Neisseria meningitidis 68094]
gi|432212728|gb|ELK68663.1| ribonuclease HII family protein [Neisseria meningitidis 88050]
gi|432217924|gb|ELK73789.1| ribonuclease HII family protein [Neisseria meningitidis 70012]
gi|432218945|gb|ELK74797.1| ribonuclease HII family protein [Neisseria meningitidis 63041]
gi|432250307|gb|ELL05702.1| ribonuclease HII family protein [Neisseria meningitidis 63049]
gi|432256346|gb|ELL11669.1| ribonuclease HII family protein [Neisseria meningitidis 2004090]
gi|432256571|gb|ELL11893.1| ribonuclease HII family protein [Neisseria meningitidis 96023]
gi|432256937|gb|ELL12248.1| ribonuclease HII family protein [Neisseria meningitidis 65014]
gi|432262765|gb|ELL18000.1| ribonuclease HII family protein [Neisseria meningitidis 61103]
gi|432262922|gb|ELL18153.1| ribonuclease HII family protein [Neisseria meningitidis 97020]
gi|432263426|gb|ELL18646.1| ribonuclease HII family protein [Neisseria meningitidis 69096]
gi|432267425|gb|ELL22603.1| ribonuclease HII family protein [Neisseria meningitidis NM3652]
gi|432269589|gb|ELL24746.1| ribonuclease HII family protein [Neisseria meningitidis 2007056]
gi|432270098|gb|ELL25245.1| ribonuclease HII family protein [Neisseria meningitidis NM3642]
gi|432274140|gb|ELL29233.1| ribonuclease HII family protein [Neisseria meningitidis 2001212]
gi|432276095|gb|ELL31157.1| ribonuclease HII family protein [Neisseria meningitidis 70030]
gi|432278108|gb|ELL33152.1| ribonuclease HII family protein [Neisseria meningitidis 63006]
Length = 194
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 69/157 (43%), Gaps = 36/157 (22%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGP++G + + P +T DSK L E+KR+ L E +K N +V W
Sbjct: 7 GVDEAGRGPLVGSVFAAAVILP----ETFDLPGLTDSKKLSEKKRDALAEMIK-NQAVAW 61
Query: 78 AVDIIDPRE------LSAKML------------------NKNKI--NLNEISHDSAIGLI 111
V P E L A ML + N+I +LN I ++ +
Sbjct: 62 HVAAAGPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLN-IPAEAVVKGD 120
Query: 112 TRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKF 148
++++ I V T DAE Y L+QR P F
Sbjct: 121 SKIIEISA--ASVLAKTARDAEMYA--LAQRHPQYGF 153
>gi|403251451|ref|ZP_10917791.1| ribonuclease HII [actinobacterium SCGC AAA027-L06]
gi|402915211|gb|EJX36194.1| ribonuclease HII [actinobacterium SCGC AAA027-L06]
Length = 199
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP GP+V + + L+ + DSK L E KRE+LFE + + + +
Sbjct: 14 IAGVDEAGRGPCAGPLVVAAVILKDPFSNELSQVK--DSKELTEAKREQLFE-IIIENCI 70
Query: 76 GWAVDIIDPRELSAKMLNKNKI 97
+ + I P E+ L+K I
Sbjct: 71 DYNIVEITPDEIDQLGLHKCNI 92
>gi|349608814|ref|ZP_08888232.1| ribonuclease HII [Neisseria sp. GT4A_CT1]
gi|348609686|gb|EGY59417.1| ribonuclease HII [Neisseria sp. GT4A_CT1]
Length = 197
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 68/158 (43%), Gaps = 34/158 (21%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP++G + + P SY DSK L E+KR+ L +K ++
Sbjct: 7 IAGVDEAGRGPLVGSVFAAAVILPPSYHLP----GLTDSKKLSEKKRDTLAVLIK-EQAL 61
Query: 76 GWAVDIIDPRE------LSAKML-------------NKNKINLNEISHDSAIGLITRVLN 116
W V DP+E L A ML +K I+ N + D +G+ +
Sbjct: 62 AWCVAQADPQEIFELNILHATMLAMSRAIHGLAIKPDKVFIDGNRVPKD--LGVDAEAVV 119
Query: 117 IG------ILLTEVYLDTVGDAEKYQAKLSQRFPSIKF 148
G I V T DAE Y L++R+P F
Sbjct: 120 KGDSKIMEISAASVLAKTARDAEMY--ALAERYPQYGF 155
>gi|15895039|ref|NP_348388.1| ribonuclease HII [Clostridium acetobutylicum ATCC 824]
gi|337736980|ref|YP_004636427.1| ribonuclease HII [Clostridium acetobutylicum DSM 1731]
gi|384458487|ref|YP_005670907.1| ribonuclease HII [Clostridium acetobutylicum EA 2018]
gi|39932446|sp|Q97I90.1|RNH2_CLOAB RecName: Full=Ribonuclease HII; Short=RNase HII
gi|15024732|gb|AAK79728.1|AE007685_4 Ribonuclease HII [Clostridium acetobutylicum ATCC 824]
gi|325509176|gb|ADZ20812.1| ribonuclease HII [Clostridium acetobutylicum EA 2018]
gi|336291927|gb|AEI33061.1| ribonuclease HII [Clostridium acetobutylicum DSM 1731]
Length = 254
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 7 LPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL-ATLNFADSKTLKEEKREEL 65
K N I G+DE GRGP+ GP+V + + ++ L L DSK L +KR+EL
Sbjct: 60 FDKQFGNIVIAGVDEVGRGPLAGPIVGAAVILELNVEKDLDLILGINDSKKLSSKKRQEL 119
Query: 66 FEDLKVNDSVGWAVDIIDPRELSAK 90
E +K ++ W + +D E+ K
Sbjct: 120 SEIIK-EKALAWEIASLDNNEIDKK 143
>gi|323341686|ref|ZP_08081919.1| ribonuclease HII [Erysipelothrix rhusiopathiae ATCC 19414]
gi|322464111|gb|EFY09304.1| ribonuclease HII [Erysipelothrix rhusiopathiae ATCC 19414]
Length = 204
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 48/92 (52%), Gaps = 15/92 (16%)
Query: 1 MGS---EAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTL 57
MGS E + W ++GIDEAGRGP+ GP V + P Y A +N DSK L
Sbjct: 1 MGSLIDEFEVNYWEQGKLVVGIDEAGRGPMAGPCVVSGVIFPKGYYD--ARIN--DSKQL 56
Query: 58 KEEKREELFEDLKVNDSVGWA------VDIID 83
E++R+EL +++ N W VDIID
Sbjct: 57 SEKQRDELVSNIESN--ALWTFTEIIPVDIID 86
>gi|340345418|ref|ZP_08668550.1| Ribonuclease [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339520559|gb|EGP94282.1| Ribonuclease [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 215
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 10/155 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+D+AGRG +LGP+V + L+ L DSK L + REEL++ + +
Sbjct: 10 ICGVDDAGRGSMLGPLVIAGIIISKKDIPKLSKLGVKDSKQLTPKLREELYKKI-IALVD 68
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
+ V I P+ + A + K NLN + +I++ LN Y+D+ + ++
Sbjct: 69 NYYVTKISPKIIDASV---TKHNLNHLEAKYMAKVISK-LNPD----TSYVDSCDVNPKR 120
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+ ++++ K ADS + VVS ASI+AK
Sbjct: 121 FGKEIAKLSKHKKIRSYHHADSRFIVVSAASIIAK 155
>gi|288573052|ref|ZP_06391409.1| Ribonuclease H [Dethiosulfovibrio peptidovorans DSM 11002]
gi|288568793|gb|EFC90350.1| Ribonuclease H [Dethiosulfovibrio peptidovorans DSM 11002]
Length = 194
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 70/161 (43%), Gaps = 27/161 (16%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
+P G+DEAGRGP+ GP+V + L + DSK + +RE++F L
Sbjct: 4 SPVFAGVDEAGRGPMAGPVVAAAAILTEEQSERLVSAGLRDSKKMTPLRREKVFS-LMGE 62
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEIS----HDSAIGLITRVLNIGILLTEVYLDT 128
V WA +A + +KIN+ + S L +R+ + G+L+
Sbjct: 63 LGVIWAAQ-------AASVERIDKINILRATLWAMRRSVERLPSRLFD-GVLVD------ 108
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
GD E QR V D +YP +S AS+VAK
Sbjct: 109 -GDKEIPDLIWPQR-------VCPHGDDVYPQISAASVVAK 141
>gi|256831070|ref|YP_003159798.1| Ribonuclease H [Desulfomicrobium baculatum DSM 4028]
gi|256580246|gb|ACU91382.1| Ribonuclease H [Desulfomicrobium baculatum DSM 4028]
Length = 207
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 35/157 (22%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRG + GP+V G + P + DSK L +R L + +K +V W
Sbjct: 17 GVDEAGRGCLAGPVVAGAVILPPDFDLP----GLTDSKKLSSRRRVVLAQAIKAQ-AVSW 71
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI--GILLTEVYLDTVGDAEKY 135
A+ P E+ ++IN+ + S +A+ L + G++L +
Sbjct: 72 ALGFSWPGEI-------DRINILQASL-AAMARAVEALRVSPGLVLVDG----------- 112
Query: 136 QAKLSQRFPSI---KFVVSKKADSLYPVVSGASIVAK 169
+QRFPS K VV D+L+P +S ASI+AK
Sbjct: 113 ----NQRFPSSLPQKTVVG--GDALHPCISAASILAK 143
>gi|206890782|ref|YP_002248663.1| ribonuclease HII [Thermodesulfovibrio yellowstonii DSM 11347]
gi|206742720|gb|ACI21777.1| ribonuclease HII [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 201
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRG + GP+V C+ S++ ++ DSK L E+RE LF+++ + V
Sbjct: 18 IAGIDEAGRGCLAGPVVAACV----SFRDSVFIEGIKDSKELSHEQRESLFQEIIKHAFV 73
Query: 76 GWA---VDIID 83
G VD+ID
Sbjct: 74 GIGIVDVDLID 84
>gi|433462621|ref|ZP_20420198.1| ribonuclease HII [Halobacillus sp. BAB-2008]
gi|432188569|gb|ELK45750.1| ribonuclease HII [Halobacillus sp. BAB-2008]
Length = 254
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 10 WASN--PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE 67
W S I GIDEAGRGP+ GP+V G + P + L L+ DSK L +KRE F
Sbjct: 65 WISQGKQAIAGIDEAGRGPLAGPVVAGAVILPEGF--YLEGLD--DSKKLSLKKREAFF- 119
Query: 68 DLKVNDSVGWAVDIIDPREL 87
++ + W V ++ E+
Sbjct: 120 -CRITEEADWGVGVVSSEEI 138
>gi|333997686|ref|YP_004530298.1| ribonuclease HII [Treponema primitia ZAS-2]
gi|333739095|gb|AEF84585.1| ribonuclease HII [Treponema primitia ZAS-2]
Length = 203
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 13/162 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+ + P + + + DSK L +EKRE + + D++
Sbjct: 2 ICGLDEAGRGPLAGPVCAAAVVLPPDFPREI----LGDSKKLSKEKREAA-RGIIMKDAL 56
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W + D E+ + + + E + ++ ++ G+ L+ L+ + D Y
Sbjct: 57 AWGIGWADHEEIDKINILRASLLAMERAFEALAAMLAGPGGAGLPLSA--LEAIVDG-LY 113
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
+++ P I V KAD P V ASI+AK M+
Sbjct: 114 IPEIA--IPCIALV---KADGKIPEVMAASILAKTERDREME 150
>gi|291519510|emb|CBK74731.1| Ribonuclease HII [Butyrivibrio fibrisolvens 16/4]
Length = 254
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W I GIDE GRGP+ GP+V C+ P + L DSK L KREEL+E++
Sbjct: 68 WEQYDYIGGIDEVGRGPLAGPVVTACVILP----KDCDILYINDSKKLTAAKREELYEEI 123
Query: 70 ---KVNDSVGWA 78
++ S+G A
Sbjct: 124 MEKAISVSIGAA 135
>gi|218898990|ref|YP_002447401.1| ribonuclease HII [Bacillus cereus G9842]
gi|228902340|ref|ZP_04066497.1| Ribonuclease [Bacillus thuringiensis IBL 4222]
gi|228909662|ref|ZP_04073485.1| Ribonuclease [Bacillus thuringiensis IBL 200]
gi|228966782|ref|ZP_04127826.1| Ribonuclease [Bacillus thuringiensis serovar sotto str. T04001]
gi|402558837|ref|YP_006601561.1| ribonuclease HII [Bacillus thuringiensis HD-771]
gi|423561757|ref|ZP_17538033.1| ribonuclease HII [Bacillus cereus MSX-A1]
gi|434376940|ref|YP_006611584.1| ribonuclease HII [Bacillus thuringiensis HD-789]
gi|226736813|sp|B7IUJ6.1|RNH2_BACC2 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|218543986|gb|ACK96380.1| ribonuclease HII [Bacillus cereus G9842]
gi|228792881|gb|EEM40439.1| Ribonuclease [Bacillus thuringiensis serovar sotto str. T04001]
gi|228849951|gb|EEM94782.1| Ribonuclease [Bacillus thuringiensis IBL 200]
gi|228857309|gb|EEN01812.1| Ribonuclease [Bacillus thuringiensis IBL 4222]
gi|401202014|gb|EJR08879.1| ribonuclease HII [Bacillus cereus MSX-A1]
gi|401787489|gb|AFQ13528.1| ribonuclease HII [Bacillus thuringiensis HD-771]
gi|401875497|gb|AFQ27664.1| ribonuclease HII [Bacillus thuringiensis HD-789]
Length = 257
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 128
Query: 76 GWAVDIIDPR 85
V I+ P+
Sbjct: 129 AIGVGIVSPQ 138
>gi|392400846|ref|YP_006437446.1| ribonuclease HII [Corynebacterium pseudotuberculosis Cp162]
gi|390531924|gb|AFM07653.1| Ribonuclease HII [Corynebacterium pseudotuberculosis Cp162]
Length = 240
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Query: 4 EAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKRE 63
E L KW P + GIDEAGRG GP+ P LATL DSK L RE
Sbjct: 32 EGTLEKWGLGP-VAGIDEAGRGSCCGPITIAACILPSRPIAALATLT--DSKKLSSRMRE 88
Query: 64 ELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEIS 103
EL+ +K +V W++ +SA ++K I IS
Sbjct: 89 ELYPLIK-KYAVAWSI-----LHISASEIDKYGIQHANIS 122
>gi|226325139|ref|ZP_03800657.1| hypothetical protein COPCOM_02931 [Coprococcus comes ATCC 27758]
gi|225206487|gb|EEG88841.1| ribonuclease HII [Coprococcus comes ATCC 27758]
Length = 253
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 71/136 (52%), Gaps = 23/136 (16%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K+A + I GIDE GRGP+ GP+V G + P + L DSK L KR+EL+++
Sbjct: 66 KYADHAFICGIDEVGRGPLAGPVVAGAVILP----KECEILYINDSKKLSAAKRDELYDE 121
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDS---AIGLIT----RVLNIGILL 121
+ ++ +V + + P + ++IN+ + ++++ AIG + +LN + +
Sbjct: 122 I-MDKAVAVGLGMASPARI-------DEINILQATYEAMRQAIGNLKVEPDLLLNDAVTI 173
Query: 122 TEVYLDTV----GDAE 133
EV + V GDA+
Sbjct: 174 PEVVIPQVPIIKGDAK 189
>gi|448339615|ref|ZP_21528633.1| ribonuclease HII [Natrinema pallidum DSM 3751]
gi|445619604|gb|ELY73131.1| ribonuclease HII [Natrinema pallidum DSM 3751]
Length = 222
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 12/159 (7%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATL--NFADSKTLKEEKREELFEDLKVNDS 74
G+DEAG+GP LG M ++ + A L DSK L ++RE+L L+ +D
Sbjct: 3 FGVDEAGKGPALGSMFAAAVHL-----EDPAALPDGIRDSKRLTPDRREDLAASLRTDDR 57
Query: 75 VGWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ V I P + + N + + + D AIG G + + DA
Sbjct: 58 IAIGVAEITPARIDEPGTDMNSLAVEAHATAIDDAIGSFESAAAAGDRPSGLCDACDTDA 117
Query: 133 EKYQAKLSQRFPSIKFVVSKK--ADSLYPVVSGASIVAK 169
+++ +++ S++ V + AD P+V ASI+AK
Sbjct: 118 DRFARRVADAC-SLEVDVDARHGADDDAPLVGAASIIAK 155
>gi|97182194|sp|Q5PBG2.2|RNH2_ANAMM RecName: Full=Ribonuclease HII; Short=RNase HII
Length = 243
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 33/166 (19%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCP---CSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
I+G+DE G G + GP+V +Y P C Y + + DSK L +KREELF K+
Sbjct: 25 IVGVDEVGYGAIAGPVVAAAVYLPERECDYIK-----DIKDSKALSSKKREELF--CKIT 77
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ V RE+ + N+ SH I + + N+G+ V +D
Sbjct: 78 AHAKYGVGFARVREI-------EQHNILVASH---ISMKRALQNLGVKADLVLVDG---- 123
Query: 133 EKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAK--RSNFER 175
++ P ++K +V K DS+ ++ ASI+AK R F R
Sbjct: 124 ----SRAPAGLPWAVKTIV--KGDSISTSIAAASIIAKVTRDRFMR 163
>gi|419778112|ref|ZP_14304014.1| ribonuclease HIII [Streptococcus oralis SK10]
gi|383187865|gb|EIC80309.1| ribonuclease HIII [Streptococcus oralis SK10]
Length = 291
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 10/166 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+G DE G G G + + L L DSKTL ++K ++ LK + +
Sbjct: 80 IIGTDEVGNGSYFGGLAVVASFVTPDQHDFLRKLGVGDSKTLTDQKIRQIAPILK--EKI 137
Query: 76 GWAVDIIDPRELSAKMLNK-NKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
V ++ P + + + + N +++ H+ AI L+ L G+ ++ +D A+
Sbjct: 138 PHQVQLLSPSKYNEVIGERYNAVSVKVALHNQAIFLL---LKKGVQPEKIVIDAFTSAKN 194
Query: 135 YQAKLSQ---RFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
Y L+Q RFP+ K + +KA+ Y V+ +SI+A+ E ++
Sbjct: 195 YDKYLAQEANRFPN-KITLEEKAEGKYLAVAVSSIIARDLFLENLE 239
>gi|354559595|ref|ZP_08978842.1| Ribonuclease H [Desulfitobacterium metallireducens DSM 15288]
gi|353541232|gb|EHC10701.1| Ribonuclease H [Desulfitobacterium metallireducens DSM 15288]
Length = 245
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDE GRGP+ GP++ P + L LN DSK L E +RE+LFE +K + ++
Sbjct: 60 VAGIDEVGRGPLAGPVMAAACILPARF--DLPGLN--DSKKLSESRREKLFEQIK-SQAL 114
Query: 76 GWAVDIIDPRELSA-KMLNKNKINLNEISHDSAI 108
G+A+ + E+ +L K+ + D I
Sbjct: 115 GYAIGSAESAEIDVLNILQATKLAMKRAVEDLRI 148
>gi|448584728|ref|ZP_21647471.1| ribonuclease HII [Haloferax gibbonsii ATCC 33959]
gi|445727582|gb|ELZ79192.1| ribonuclease HII [Haloferax gibbonsii ATCC 33959]
Length = 215
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 15/165 (9%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+G+DEAG+GPVLGPMV + P + ADSK L E+REEL L+ D V
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVRGDPDALPD-----GIADSKRLAPERREELAAKLRDRDDV 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR---VLNIGILLTEVYLDTVGDA 132
V ++P + + N + + +A + V + G + +
Sbjct: 58 EVGVAFVEPETIDDPETDMNLLTVRAQVEAAAEVAVDADELVCDAGDVSESRF------G 111
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
+ + L++ ++ +AD + +V ASIVAK R++
Sbjct: 112 RRIREGLAEAGVEVEVHAQHRADDEHAIVGAASIVAKVERDRRVE 156
>gi|423359127|ref|ZP_17336630.1| ribonuclease HII [Bacillus cereus VD022]
gi|401084999|gb|EJP93245.1| ribonuclease HII [Bacillus cereus VD022]
Length = 257
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 128
Query: 76 GWAVDIIDPR 85
V I+ P+
Sbjct: 129 AIGVGIVSPQ 138
>gi|448620244|ref|ZP_21667592.1| ribonuclease HII [Haloferax denitrificans ATCC 35960]
gi|445757032|gb|EMA08388.1| ribonuclease HII [Haloferax denitrificans ATCC 35960]
Length = 215
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 15/165 (9%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+G+DEAG+GPVLGPMV + P + + ADSK L E+R EL L+ D V
Sbjct: 3 VGVDEAGKGPVLGPMVAAAVRADPDALPE-----GIADSKRLSPERRAELAAKLRERDDV 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR---VLNIGILLTEVYLDTVGDA 132
V ++P + + N + + +A + V + G + +
Sbjct: 58 EVGVAFVEPETIDDPETDMNLLTVRAQVEAAAEVAVDADELVCDAGDVSESRF------G 111
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
+ + +++ S++ +AD + +V ASIVAK R++
Sbjct: 112 RRVREGVAEAGVSVEVHAQHRADDEHAIVGAASIVAKVERDRRVE 156
>gi|347757971|ref|YP_004865533.1| ribonuclease HII family protein [Micavibrio aeruginosavorus ARL-13]
gi|347590489|gb|AEP09531.1| ribonuclease HII family protein [Micavibrio aeruginosavorus ARL-13]
Length = 239
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+V C+Y P + + DSK L +KR+ LF+ ++ +
Sbjct: 49 VCGLDEAGRGPLAGPVVAACVYVPPAARDLDFWAGVNDSKKLTAKKRDALFDLIQTHCIC 108
Query: 76 GWA---VDIID 83
G A VD ID
Sbjct: 109 GIAEASVDEID 119
>gi|303246153|ref|ZP_07332434.1| Ribonuclease H [Desulfovibrio fructosovorans JJ]
gi|302492549|gb|EFL52420.1| Ribonuclease H [Desulfovibrio fructosovorans JJ]
Length = 206
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 21/165 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRG + GP+V G + P +Y T DSK L +RE L +K ++
Sbjct: 7 IAGVDEAGRGCLAGPVVAGAVILPEAYDLPFLT----DSKKLSAARREGLAPAIKAQ-AI 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
WAV + P E+ ++IN+ + + +A+ R L + L G+
Sbjct: 62 AWAVGMAWPVEI-------DRINILQATF-AAMSRAVRALRV----RPEALKIDGNKRIP 109
Query: 136 QAKLSQ--RFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMDI 178
A L+ P + ++ D P +S ASI+AK S + M I
Sbjct: 110 AAHLANIAAPPPQEAIIG--GDLSVPAISAASILAKTSRDKLMTI 152
>gi|227872391|ref|ZP_03990738.1| ribonuclease H [Oribacterium sinus F0268]
gi|227841751|gb|EEJ52034.1| ribonuclease H [Oribacterium sinus F0268]
Length = 217
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+V P + LN DSK + E++RE LF ++K N ++
Sbjct: 29 IAGVDEAGRGPLAGPVVAATAILPKDH--LFYYLN--DSKKMTEKRREALFLEIKEN-AI 83
Query: 76 GWAVDIIDPREL 87
+ + I+ P +
Sbjct: 84 AYGIGIVSPERI 95
>gi|302036358|ref|YP_003796680.1| ribonuclease HIII (fragment) [Candidatus Nitrospira defluvii]
gi|300604422|emb|CBK40754.1| Ribonuclease HIII (fragment) [Candidatus Nitrospira defluvii]
Length = 219
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 12/164 (7%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDE+G+G GP+V ++ + +Q LA + DSK + + + E+ D+++
Sbjct: 13 IGIDESGKGDYFGPLVIAAVFVTPALEQDLALMQVRDSKKISDGRILEMAPDIRL--LCP 70
Query: 77 WAVDIIDPR---ELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
++ I P+ EL AK+ N N+ L H A+ + + ++ + + D GD
Sbjct: 71 HSLVAIGPQRYNELYAKIKNLNR--LLAWGHARALENLLQQVDCDLAIA----DQFGDER 124
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
L ++ I+ V KA+S V+ ASI+A+ +R+D
Sbjct: 125 LILNALQEKGKQIRLVQRTKAESDL-AVAAASILARADFLQRLD 167
>gi|223998909|ref|XP_002289127.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220974335|gb|EED92664.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 183
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 7/73 (9%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTL-KEEKREELFEDLKVNDS 74
++G+DEAGRGP+ GP+V P + + + DSK + KEE RE L+E+L +
Sbjct: 1 VVGVDEAGRGPLAGPVVAAAAIVPTNIEGVI------DSKKITKEEDRERLYEELVSSPG 54
Query: 75 VGWAVDIIDPREL 87
+ +AV I+ + +
Sbjct: 55 IRYAVAIVSAQRI 67
>gi|120603190|ref|YP_967590.1| ribonuclease HII [Desulfovibrio vulgaris DP4]
gi|166225183|sp|A1VFE7.1|RNH2_DESVV RecName: Full=Ribonuclease HII; Short=RNase HII
gi|120563419|gb|ABM29163.1| RNase HII [Desulfovibrio vulgaris DP4]
Length = 220
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 24/169 (14%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
P GIDEAGRG + GP+V + P Y TL L DSK L +RE L E ++ +
Sbjct: 16 PVFAGIDEAGRGCLAGPVVAAAVILPQEY--TLPGLT--DSKKLTAARRESLAEGIR-SC 70
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
+V W + ++ PR++ ++IN+ + + A+ RVL L GD
Sbjct: 71 AVTWGLGVVWPRDI-------DRINILQATF-RAMARAVRVLR----QPPPALLIDGDKT 118
Query: 134 KYQAKLSQ-----RFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
L+ P+ + ++ D P +S ASI+AK MD
Sbjct: 119 LPPHVLTTLSCDGHLPTQRAIIG--GDGCIPAISAASILAKTFRDRLMD 165
>gi|389774299|ref|ZP_10192418.1| ribonuclease HII [Rhodanobacter spathiphylli B39]
gi|388437898|gb|EIL94653.1| ribonuclease HII [Rhodanobacter spathiphylli B39]
Length = 196
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 75/157 (47%), Gaps = 24/157 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+ + S + +A L+ DSK L E KRE L+ L + +
Sbjct: 7 VAGVDEAGRGPLAGPLAVAAVILDPS--RPIAGLD--DSKKLSEAKREALYP-LIIERAR 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W V +I+P E+ +++N I + G+ V + E +D G+
Sbjct: 62 AWCVVLIEPDEI-------DRLN---IFQATMTGMSRAVAGLAPGAHEALVD--GN---- 105
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSN 172
+L + P + D+L P +S ASI+AK S
Sbjct: 106 --RLPKDLPCPGRAIV-GGDALEPAISAASILAKVSR 139
>gi|406947101|gb|EKD78098.1| ribonuclease HII [uncultured bacterium]
Length = 196
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 27/155 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+ + T L DSK L E+KRE+LF ++ +
Sbjct: 8 IAGVDEAGRGPLAGPVFAAAVIL----NPTHNILELTDSKLLTEKKREKLFTEI-TEKCI 62
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
++V E+ +++N I S + + V + ++ EV++D
Sbjct: 63 SYSVAFSSVAEI-------DEMN---ILQASLLAMRRAVAQLTVVPHEVWVD-------- 104
Query: 136 QAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAK 169
+ R P K ++ + D L PV+S ASI+AK
Sbjct: 105 -GNQNPRCPYPTKLII--QGDFLIPVISAASIIAK 136
>gi|345881415|ref|ZP_08832935.1| ribonuclease HII [Prevotella oulorum F0390]
gi|343919654|gb|EGV30398.1| ribonuclease HII [Prevotella oulorum F0390]
Length = 211
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 18/172 (10%)
Query: 7 LPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF 66
LP + ++ G DE GRG + G + + P Y + DSK L + KR L
Sbjct: 3 LPHYYTDKIEAGCDEVGRGCLAGSVYAAAVILPQDYDNP----HLNDSKKLTQAKRYALR 58
Query: 67 EDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL 126
E + + D++ WAV I+ P+E+ +KIN I H S + + + + + V +
Sbjct: 59 EQI-MQDALAWAVGIVTPQEI-------DKIN---ILHASFLAMHRALDQLSVRPEAVVV 107
Query: 127 D-TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK--RSNFER 175
D DA L ++ K D Y ++ ASI+AK R ++ R
Sbjct: 108 DGNRFDAYVVGKGLPGEGTTLPHTCVVKGDGKYQTIAAASILAKTFRDDYMR 159
>gi|339484815|ref|YP_004696601.1| ribonuclease HII/HIII [Nitrosomonas sp. Is79A3]
gi|338806960|gb|AEJ03202.1| ribonuclease HII/HIII [Nitrosomonas sp. Is79A3]
Length = 202
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 25/167 (14%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
+++N I G+DEAGRGP+ GP+ C+ ++ ADSK L E+KRE L +
Sbjct: 8 FSANAVICGVDEAGRGPLAGPVYAACVVLDVDHK----IAGLADSKELSEKKREVLAIAI 63
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
K + WA+ SA + +++N+ + S + + R + + ++ L V
Sbjct: 64 K-KYAKAWAI-------ASASVQEIDQLNILQAS----LLAMKRAVESLPFVPDMAL--V 109
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
+ Q K S R + DSL P +S ASI+AK + + M
Sbjct: 110 DGNQSPQLKCSVR-------TIIRGDSLIPEISAASILAKTARDKEM 149
>gi|304312462|ref|YP_003812060.1| ribonuclease HII [gamma proteobacterium HdN1]
gi|301798195|emb|CBL46417.1| Ribonuclease HII [gamma proteobacterium HdN1]
Length = 201
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 31/164 (18%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I G+DE GRGP++G +V + P + L DSK L E+KRE+L E ++ +
Sbjct: 16 IAGVDEVGRGPLIGAVVAAAVILDPAKPIEGL-----TDSKKLSEKKREQLAEQIRAQ-A 69
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ WA+ + E+ ++IN I S + + VL + I V +D
Sbjct: 70 LAWAIGRAEAEEI-------DRIN---ILQASLLAMQRAVLQLAIQPDLVLVD------- 112
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKRSNFERM 176
R P + K D L P +S ASI+AK + + M
Sbjct: 113 -----GNRCPRLSLPCRAIVKGDLLVPCISAASILAKVARDQEM 151
>gi|294668304|ref|ZP_06733408.1| hypothetical protein NEIELOOT_00217 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291309758|gb|EFE51001.1| hypothetical protein NEIELOOT_00217 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 196
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 15/110 (13%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGP++G + + P Y LA L ADSK L E+KR+ L E+++ +VGW
Sbjct: 8 GVDEAGRGPLVGSVFAAAVILPPDYD--LAGL--ADSKKLSEKKRDALAEEIR-RQAVGW 62
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD 127
V D E++ LN I H + + + V + + +V++D
Sbjct: 63 CVASADVAEIA---------ELN-ILHAAMLAMRRAVEGLAVPPQKVWID 102
>gi|271499509|ref|YP_003332534.1| Ribonuclease H [Dickeya dadantii Ech586]
gi|270343064|gb|ACZ75829.1| Ribonuclease H [Dickeya dadantii Ech586]
Length = 198
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 29/166 (17%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI G+DE GRGP++G +V + S + ADSKTL E++R L+++++ +
Sbjct: 12 CIAGVDEVGRGPLVGAVVTAAVILDPSRP----IVGLADSKTLSEKRRLALYDEIR-EKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ LN I H + + + V + + V +D
Sbjct: 67 LAWSLGRAEPEEID---------TLN-ILHATMLAMQRAVAALPVTPDFVLID------- 109
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKRSNFERMDI 178
R P++ K DS +S ASI+AK + M++
Sbjct: 110 -----GNRCPALPMPSQAVVKGDSRVAEISAASILAKVTRDREMEV 150
>gi|224372133|ref|YP_002606505.1| ribonuclease HII [Nautilia profundicola AmH]
gi|223589086|gb|ACM92822.1| ribonuclease HII [Nautilia profundicola AmH]
Length = 196
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 12/86 (13%)
Query: 16 IMGIDEAGRGPVLGPMVY-GCLY-------CPCSYQQTLATLNFADSKTLKEEKREELFE 67
I GIDEAGRGP+ GP+V GC++ ++ L LN DSK L +KREELFE
Sbjct: 5 ICGIDEAGRGPIAGPLVVAGCIFKNEKLKVKSEKWENFLQKLN--DSKKLNAKKREELFE 62
Query: 68 DLKVNDSVGWAVDIIDPRELSAKMLN 93
+ ++ + + +D + + K L+
Sbjct: 63 I--IQETCEYHIVFVDNKTIDEKGLS 86
>gi|91762761|ref|ZP_01264726.1| Ribonuclease HII (RNase HII) [Candidatus Pelagibacter ubique
HTCC1002]
gi|91718563|gb|EAS85213.1| Ribonuclease HII (RNase HII) [Candidatus Pelagibacter ubique
HTCC1002]
Length = 186
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 29/159 (18%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
+ G+DE GRG ++GP+ + S + L DSKTL ++KREEL + +K N
Sbjct: 3 ILAGVDEVGRGSLIGPVYAAAIILNNSIDKKL----LKDSKTLTKDKREELEKYIKKNSI 58
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD--TVGDA 132
WA+ +E+ KIN I S + + +L + + V +D + D
Sbjct: 59 --WAIGQASTKEIE-------KIN---ILQASLLAMKRAILKLKTKPSLVLIDGNKLPDL 106
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRS 171
+ Y+ +K+V+ K D P +S ASIVAK S
Sbjct: 107 KNYK---------LKYVI--KGDQKIPSISAASIVAKVS 134
>gi|332522627|ref|ZP_08398879.1| ribonuclease HII [Streptococcus porcinus str. Jelinkova 176]
gi|332313891|gb|EGJ26876.1| ribonuclease HII [Streptococcus porcinus str. Jelinkova 176]
Length = 258
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V C+ P + + + LN DSK + + K LFE +K N +V
Sbjct: 73 IAGIDEVGRGPLAGPVVAACVILPKNCK--IKGLN--DSKKIPKSKHNILFEQIK-NQAV 127
Query: 76 GWAVDIIDPRELSA 89
G + I+D + + +
Sbjct: 128 GIGIGIVDNKMIDS 141
>gi|254994768|ref|ZP_05276958.1| ribonuclease HII (rnhB) [Anaplasma marginale str. Mississippi]
Length = 239
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 33/166 (19%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCP---CSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
I+G+DE G G + GP+V +Y P C Y + + DSK L +KREELF K+
Sbjct: 21 IVGVDEVGYGAIAGPVVAAAVYLPERECDYIK-----DIKDSKALSSKKREELF--CKIT 73
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ V RE+ + N+ SH I + + N+G+ V +D
Sbjct: 74 AHARYGVGFARVREI-------EQHNILVASH---ISMKRALQNLGVKADLVLVDG---- 119
Query: 133 EKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAK--RSNFER 175
++ P ++K +V K DS+ ++ ASI+AK R F R
Sbjct: 120 ----SRAPAGLPWAVKTIV--KGDSISTSIAAASIIAKVTRDRFMR 159
>gi|229104399|ref|ZP_04235068.1| Ribonuclease [Bacillus cereus Rock3-28]
gi|228679097|gb|EEL33305.1| Ribonuclease [Bacillus cereus Rock3-28]
Length = 257
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P ++ DSK L E KRE ++++K ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPDNF----YIPGLDDSKKLSEAKRERFYDEIKAQ-AI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DEINIYQATKQA---MLDAVANLSCTPQYLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL P + K D+ +S ASI+AK
Sbjct: 173 --KLPTSIPQTSII---KGDAKSVSISAASIIAK 201
>gi|452946817|gb|EME52310.1| ribonuclease HII [Rhodococcus ruber BKS 20-38]
Length = 232
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRG GP+V TLA L+ DSK L E+ REELF ++ +V
Sbjct: 31 VAGVDEAGRGACAGPLVVAACILDPRPHPTLARLD--DSKKLTEKTREELFPIIR-RRAV 87
Query: 76 GWAVDIIDPRELSA 89
W+V I+ E+ A
Sbjct: 88 AWSVVIVPAAEIDA 101
>gi|255004020|ref|ZP_05278821.1| ribonuclease HII (rnhB) [Anaplasma marginale str. Virginia]
Length = 239
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 33/166 (19%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCP---CSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
I+G+DE G G + GP+V +Y P C Y + + DSK L +KREELF K+
Sbjct: 21 IVGVDEVGYGAIAGPVVAAAVYLPERECDYIK-----DIKDSKALSSKKREELF--CKIT 73
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ V RE+ + N+ SH I + + N+G+ V +D
Sbjct: 74 AHARYGVGFARVREI-------EQHNILVASH---ISMKRALQNLGVKADLVLVDG---- 119
Query: 133 EKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAK--RSNFER 175
++ P ++K +V K DS+ ++ ASI+AK R F R
Sbjct: 120 ----SRAPAGLPWAVKTIV--KGDSISTSIAAASIIAKVTRDRFMR 159
>gi|323691868|ref|ZP_08106122.1| ribonuclease [Clostridium symbiosum WAL-14673]
gi|323504075|gb|EGB19883.1| ribonuclease [Clostridium symbiosum WAL-14673]
Length = 219
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K+ I GIDEAGRGP+ GP+V P + L DSK L E +REELF +
Sbjct: 25 KYEEYSVICGIDEAGRGPLAGPVVAAAAVLP----KDAVILWLNDSKKLSERRREELFLE 80
Query: 69 LKVNDSVGWAVDIIDP 84
++ +V + V I+ P
Sbjct: 81 IR-EKAVAYGVGIVSP 95
>gi|313889379|ref|ZP_07823027.1| ribonuclease HII [Streptococcus pseudoporcinus SPIN 20026]
gi|416851618|ref|ZP_11908763.1| ribonuclease HII [Streptococcus pseudoporcinus LQ 940-04]
gi|313122211|gb|EFR45302.1| ribonuclease HII [Streptococcus pseudoporcinus SPIN 20026]
gi|356739107|gb|EHI64339.1| ribonuclease HII [Streptococcus pseudoporcinus LQ 940-04]
Length = 257
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI GIDE GRGP+ GP+V C+ P + + + LN DSK + + K LFE +K +
Sbjct: 72 CIAGIDEVGRGPLAGPVVAACVVLPKNCK--IKGLN--DSKKIPKSKHITLFEQIK-KQA 126
Query: 75 VGWAVDIID 83
+G + I+D
Sbjct: 127 MGIGIGIVD 135
>gi|422333344|ref|ZP_16414355.1| ribonuclease HII [Escherichia coli 4_1_47FAA]
gi|373245859|gb|EHP65324.1| ribonuclease HII [Escherichia coli 4_1_47FAA]
Length = 198
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 29/162 (17%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
+ + G+DE GRGP++G +V + S + +A LN DSK L E++R L+E++
Sbjct: 6 YPHTQLVAGVDEVGRGPLVGAVVTAAVILDPS--RPIAGLN--DSKKLSEKRRLALYEEI 61
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
K ++ W++ +P E+ +++N I H + + + V + I V +D
Sbjct: 62 K-EKALSWSLGRAEPHEI-------DELN---ILHATMLAMQRAVAGLHIAPEYVLID-- 108
Query: 130 GDAEKYQAKLSQRFPSIKF--VVSKKADSLYPVVSGASIVAK 169
R P + + K DS P +S ASI+AK
Sbjct: 109 ----------GNRCPKLPMPAMAVVKGDSRVPEISAASILAK 140
>gi|386067677|ref|YP_005982981.1| ribonuclease HII [Pseudomonas aeruginosa NCGM2.S1]
gi|348036236|dbj|BAK91596.1| ribonuclease HII [Pseudomonas aeruginosa NCGM2.S1]
Length = 201
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 25/161 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DE GRGP+ GP+V + + L DSK L+E +RE LFE+++ ++
Sbjct: 14 VAGVDEVGRGPLCGPVVTAAVI----LDPSRPILGLNDSKKLREARREALFEEIR-EKAL 68
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W + A++ +++N I H + + + V + + +D
Sbjct: 69 AWCIA-------RAEVEEIDRLN---ILHATMLAMQRAVEGLSVTPRLALIDG-----NR 113
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
KL+ PS V K DS P ++ ASI+AK S M
Sbjct: 114 CPKLA--VPSAPVV---KGDSQVPAIAAASILAKVSRDREM 149
>gi|443328950|ref|ZP_21057542.1| ribonuclease HII [Xenococcus sp. PCC 7305]
gi|442791495|gb|ELS00990.1| ribonuclease HII [Xenococcus sp. PCC 7305]
Length = 203
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 7 LPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF 66
L ++ + + G+DE GRG + GP+V + P S L + DSK L +KR++L
Sbjct: 9 LSEYGQDALVAGVDEVGRGALFGPVVAAAVVLPLSQLPKLQEIGVRDSKQLSPQKRQKLI 68
Query: 67 EDLK 70
E +K
Sbjct: 69 EPIK 72
>gi|389847511|ref|YP_006349750.1| ribonuclease HII [Haloferax mediterranei ATCC 33500]
gi|448617289|ref|ZP_21665944.1| ribonuclease HII [Haloferax mediterranei ATCC 33500]
gi|388244817|gb|AFK19763.1| ribonuclease HII [Haloferax mediterranei ATCC 33500]
gi|445748638|gb|EMA00085.1| ribonuclease HII [Haloferax mediterranei ATCC 33500]
Length = 215
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 15/157 (9%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+G+DEAG+GPVLGPMV + P + ADSK L +REEL L+ D +
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVRADPEALPD-----GIADSKRLTPVRREELAAKLRERDDI 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR---VLNIGILLTEVYLDTVGDA 132
V I+P + + N + + +A V + G + + V D
Sbjct: 58 AVGVAFIEPATIDDPETDMNLLTVRAQVEAAAAVAADDDELVCDAGDVSESRFGRRVRDG 117
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+++ S++ +AD + +V ASIVAK
Sbjct: 118 ------VAEAGASVEVHAQHRADDEHAIVGAASIVAK 148
>gi|348029848|ref|YP_004872534.1| ribonuclease H [Glaciecola nitratireducens FR1064]
gi|347947191|gb|AEP30541.1| ribonuclease H [Glaciecola nitratireducens FR1064]
Length = 213
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 29/163 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DE GRGP++G +V + L ADSK L E+KR EL +K N ++
Sbjct: 19 VAGVDEVGRGPLVGDVVTAAVIL----DPKRPILGLADSKKLSEKKRNELAVLIKQN-AL 73
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W++ A +L +++N I H + + + V + I V +D
Sbjct: 74 SWSIG-------RANVLEIDQLN---ILHATMLAMQRAVEGLNIQPEHVLVD-------- 115
Query: 136 QAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKRSNFERM 176
R P + K D+L+P +S ASI+AK + + M
Sbjct: 116 ----GNRCPPWSYSSHAVVKGDALFPQISAASIIAKVTRDDEM 154
>gi|94310391|ref|YP_583601.1| ribonuclease HII [Cupriavidus metallidurans CH34]
gi|189043647|sp|Q1LNE4.1|RNH2_RALME RecName: Full=Ribonuclease HII; Short=RNase HII
gi|93354243|gb|ABF08332.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Cupriavidus
metallidurans CH34]
Length = 226
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 32/159 (20%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+ + + Q ADSK L EKRE LF+ + + ++
Sbjct: 26 LCGVDEAGRGPLAGPVYAAAVVLNPARQ----IRGLADSKILSAEKREALFDRI-CDHAL 80
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI---GILLTEVYLDTVGDA 132
GW + SA + + IN I H S + + V + G++ V +D
Sbjct: 81 GWHI-------ASASVEEIDSIN---ILHASMLAMQRAVQGLAASGVIPDLVQVD----- 125
Query: 133 EKYQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAK 169
R P + F V K D+ +S ASI+AK
Sbjct: 126 -------GNRCPQVAFPVEAIVKGDAKVRAISAASILAK 157
>gi|189485020|ref|YP_001955961.1| ribonuclease HII [uncultured Termite group 1 bacterium phylotype
Rs-D17]
gi|254808005|sp|B1GZ18.1|RNH2_UNCTG RecName: Full=Ribonuclease HII; Short=RNase HII
gi|170286979|dbj|BAG13500.1| ribonuclease HII [uncultured Termite group 1 bacterium phylotype
Rs-D17]
Length = 210
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 5/68 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGP+ GP+V + P + LN DSK L E+KRE LFE +K ++
Sbjct: 20 VAGIDEAGRGPLAGPVVAAVVILPKD--SAIPYLN--DSKQLSEKKREILFEIIK-ETAL 74
Query: 76 GWAVDIID 83
+AV++++
Sbjct: 75 DYAVELVN 82
>gi|148284488|ref|YP_001248578.1| ribonuclease HII [Orientia tsutsugamushi str. Boryong]
gi|189043633|sp|A5CDI4.1|RNH2_ORITB RecName: Full=Ribonuclease HII; Short=RNase HII
gi|146739927|emb|CAM79925.1| ribonuclease HII [Orientia tsutsugamushi str. Boryong]
Length = 205
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 27/163 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+V + Q++ + DSK L + KRE ++ K+ +S
Sbjct: 16 VAGVDEAGRGPLAGPVVAAAV----VVNQSIMIDDIKDSKVLSKSKRESCYD--KITNSY 69
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+++ I +E+ +K N+ E + + I V N+ I+ T+V +D
Sbjct: 70 YYSIGIASVQEI-------DKYNILEA---TKLACIRAVKNLAIIPTKVLVDG------- 112
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMDI 178
+ F +F+ + D + +S ASIVAK + M I
Sbjct: 113 ----NMNFTDNRFISIVRGDQICYSISSASIVAKVTRDRIMQI 151
>gi|390436917|ref|ZP_10225455.1| ribonuclease HII [Pantoea agglomerans IG1]
Length = 208
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 29/163 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP++G +V + + T ADSK L E++R L +++K ++
Sbjct: 12 IAGVDEVGRGPLVGAVVTAAVILDPANPIT----GLADSKKLSEKRRLALCDEIK-EKAL 66
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W++ +P E+ +++N I H + + + V +GI V +D
Sbjct: 67 AWSLGRAEPEEI-------DQLN---ILHATMLAMQRAVAGLGIQPDYVLID-------- 108
Query: 136 QAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKRSNFERM 176
R P++ K DSL +S ASI+AK S + M
Sbjct: 109 ----GNRCPALPMPSQAVVKGDSLVAEISAASIIAKVSRDQEM 147
>gi|323484795|ref|ZP_08090152.1| ribonuclease HII [Clostridium symbiosum WAL-14163]
gi|323401901|gb|EGA94242.1| ribonuclease HII [Clostridium symbiosum WAL-14163]
Length = 219
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K+ I GIDEAGRGP+ GP+V P + L DSK L E +REELF +
Sbjct: 25 KYEEYSVICGIDEAGRGPLAGPVVAAAAVLP----KDAVILWLNDSKKLSERRREELFLE 80
Query: 69 LKVNDSVGWAVDIIDP 84
++ +V + V I+ P
Sbjct: 81 IR-EKAVAYGVGIVSP 95
>gi|308190329|ref|YP_003923260.1| ribonuclease H [Mycoplasma fermentans JER]
gi|319777726|ref|YP_004137377.1| ribonuclease [Mycoplasma fermentans M64]
gi|307625071|gb|ADN69376.1| ribonuclease H [Mycoplasma fermentans JER]
gi|318038801|gb|ADV35000.1| Ribonuclease [Mycoplasma fermentans M64]
Length = 198
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 74/154 (48%), Gaps = 25/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+G+DEAGRG GP+V GC+ P ++ L DSK L +++REE E + + +++
Sbjct: 15 IVGLDEAGRGCCAGPLVVGCVIMPQNFNHPL----IKDSKQLSQKQREEALEII-LENAI 69
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
II+ +E+ LN S IG+ R +N L T+ L + D EK
Sbjct: 70 ETVTTIINAQEVD--QLNP--------KQASRIGM-QRCIN--KLNTKPEL-VITDFEKI 115
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
P I V K D L V+ ASI+AK
Sbjct: 116 N---DINIPQINLV---KGDQLSINVAAASILAK 143
>gi|326791381|ref|YP_004309202.1| ribonuclease H [Clostridium lentocellum DSM 5427]
gi|326542145|gb|ADZ84004.1| Ribonuclease H [Clostridium lentocellum DSM 5427]
Length = 254
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++GIDE GRGP+ GP+V + P Y L L DSK L E KRE+L++ ++ N +
Sbjct: 70 ILVGIDEVGRGPLAGPVVAAAVILP--YDTNLVGLK--DSKKLTEPKREKLYDQIQSN-A 124
Query: 75 VGWAVDIID 83
+G + I+D
Sbjct: 125 LGIGIGIVD 133
>gi|87199856|ref|YP_497113.1| ribonuclease HII [Novosphingobium aromaticivorans DSM 12444]
gi|97189114|sp|Q2G794.1|RNH2_NOVAD RecName: Full=Ribonuclease HII; Short=RNase HII
gi|87135537|gb|ABD26279.1| RNase HII [Novosphingobium aromaticivorans DSM 12444]
Length = 196
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 16/153 (10%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAGRGP+ GP+V + C + + DSK L +R EL E K+
Sbjct: 4 IGVDEAGRGPLAGPVVAAAVVL-CKPRPS----GLDDSKKLSAARRAELEE--KIKRRCR 56
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
WAV +++P E+ N ++ A+G + L + EV +D G+ +
Sbjct: 57 WAVGVVEPDEID----RLNIFGATMLAMTLAVGALCEQLAHDEDVGEVLVD--GNLTPHG 110
Query: 137 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+ +P+ V D+L P +S ASI+AK
Sbjct: 111 RRPEWCWPARPIV---GGDALEPCISAASIIAK 140
>gi|452852396|ref|YP_007494080.1| Ribonuclease HII [Desulfovibrio piezophilus]
gi|451896050|emb|CCH48929.1| Ribonuclease HII [Desulfovibrio piezophilus]
Length = 213
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 20/154 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRG + GP+V G P Y DSK L KR L++ ++ +V
Sbjct: 17 IAGVDEAGRGCLAGPVVAGACILPAEYDLP----GLTDSKQLTAAKRAVLYDQIR-QQAV 71
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
WAV + E+ A IN+ E ++ A+ R L L + + +
Sbjct: 72 CWAVGVAWAPEIDA-------INILEATYQ-AMARAVRSLKEKPLFLRIDGNKTIPSYAL 123
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
Q ++Q ++V+ K D P +S AS++AK
Sbjct: 124 QQDIAQ-----EYVI--KGDGSVPAISAASVMAK 150
>gi|379715617|ref|YP_005303954.1| ribonuclease HII [Corynebacterium pseudotuberculosis 316]
gi|387140904|ref|YP_005696882.1| ribonuclease HII [Corynebacterium pseudotuberculosis 1/06-A]
gi|355392695|gb|AER69360.1| Ribonuclease HII [Corynebacterium pseudotuberculosis 1/06-A]
gi|377654323|gb|AFB72672.1| Ribonuclease HII [Corynebacterium pseudotuberculosis 316]
Length = 240
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 4 EAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKRE 63
E L KW P + GIDEAGRG GP+ P LATL DSK L RE
Sbjct: 32 EGTLEKWGLGP-VAGIDEAGRGSCCGPITIAACILPSRPIAALATLT--DSKKLSSRMRE 88
Query: 64 ELFEDLKVNDSVGWAVDIIDPREL 87
EL+ +K +V W++ I E+
Sbjct: 89 ELYPLIK-KYAVAWSILHISASEI 111
>gi|336113792|ref|YP_004568559.1| ribonuclease H [Bacillus coagulans 2-6]
gi|335367222|gb|AEH53173.1| Ribonuclease H [Bacillus coagulans 2-6]
Length = 255
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+V C+ P + L LN DSK L E++RE F ++ V
Sbjct: 71 IAGIDEAGRGPLAGPVVAACVILPEDF--CLPGLN--DSKQLSEKQREAFFAHIQEEALV 126
Query: 76 G 76
G
Sbjct: 127 G 127
>gi|352682597|ref|YP_004893121.1| Ribonuclease HII [Thermoproteus tenax Kra 1]
gi|350275396|emb|CCC82043.1| Ribonuclease HII [Thermoproteus tenax Kra 1]
Length = 196
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 75/157 (47%), Gaps = 19/157 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED-LKVNDS 74
+ GIDEAGRGP++GPMV + + L +L DSKTL ++R+ L+ L+ +
Sbjct: 3 VAGIDEAGRGPLVGPMVVAIV---AGDNERLRSLGVRDSKTLTPQRRKSLYSAVLQTAEC 59
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD--A 132
V + V I+P + + + K+NL E + + I + + Y D A
Sbjct: 60 VNYIV--IEPAVID-QYVGSRKLNLLEAEAMAQL--------INLCEADAYYVDAPDPVA 108
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E++ LS + + V + P V+ ASIVAK
Sbjct: 109 ERFGRALSA--ATGRSVTALHKAERVPAVAAASIVAK 143
>gi|407275732|ref|ZP_11104202.1| ribonuclease HII [Rhodococcus sp. P14]
Length = 214
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 4 EAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKRE 63
E+ L + P + G+DEAGRG GP+V TLA L+ DSK L E+ RE
Sbjct: 2 ESTLVRCGLGP-VAGVDEAGRGACAGPLVVAACILDRRPHPTLARLD--DSKKLTEKTRE 58
Query: 64 ELFEDLKVNDSVGWAVDIIDPRELSA 89
ELF ++ +V W+V I+ E+ A
Sbjct: 59 ELFPIIR-RRAVAWSVVIVPAAEIDA 83
>gi|386740650|ref|YP_006213830.1| Ribonuclease HII [Corynebacterium pseudotuberculosis 31]
gi|387138913|ref|YP_005694892.1| Ribonuclease HII [Corynebacterium pseudotuberculosis CIP 52.97]
gi|389850667|ref|YP_006352902.1| Ribonuclease HII [Corynebacterium pseudotuberculosis 258]
gi|349735391|gb|AEQ06869.1| Ribonuclease HII [Corynebacterium pseudotuberculosis CIP 52.97]
gi|384477344|gb|AFH91140.1| Ribonuclease HII [Corynebacterium pseudotuberculosis 31]
gi|388247973|gb|AFK16964.1| Ribonuclease HII [Corynebacterium pseudotuberculosis 258]
Length = 240
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 4 EAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKRE 63
E L KW P + GIDEAGRG GP+ P LATL DSK L RE
Sbjct: 32 EGTLEKWGLGP-VAGIDEAGRGSCCGPITIAACILPSRPIAALATLT--DSKKLSSRMRE 88
Query: 64 ELFEDLKVNDSVGWAVDIIDPREL 87
EL+ +K +V W++ I E+
Sbjct: 89 ELYPLIK-KYAVAWSILHISASEI 111
>gi|261344722|ref|ZP_05972366.1| ribonuclease HII [Providencia rustigianii DSM 4541]
gi|282567164|gb|EFB72699.1| ribonuclease HII [Providencia rustigianii DSM 4541]
Length = 196
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 27/155 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I G+DE GRGP++G +V + P + + LA DSK L E+KRE+LF+++K +
Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLA-----DSKKLTEKKREKLFDEIK-EKA 64
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W + +P N+I+ I H + + + V + I V +D
Sbjct: 65 LCWCIGRAEP----------NEIDELNILHATMLAMQRAVAGLSITPEFVLVDG-----N 109
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KLS PS V K DSL +S ASI+AK
Sbjct: 110 RCPKLS--MPSQAVV---KGDSLVQEISAASILAK 139
>gi|355627811|ref|ZP_09049442.1| ribonuclease HII [Clostridium sp. 7_3_54FAA]
gi|354820136|gb|EHF04562.1| ribonuclease HII [Clostridium sp. 7_3_54FAA]
Length = 219
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K+ I GIDEAGRGP+ GP+V P + L DSK L E +REELF +
Sbjct: 25 KYEEYSVICGIDEAGRGPLAGPVVAAAAVLP----KDAVILWLNDSKKLSERRREELFLE 80
Query: 69 LKVNDSVGWAVDIIDP 84
++ +V + V I+ P
Sbjct: 81 IR-EKAVAYGVGIVSP 95
>gi|220915421|ref|YP_002490725.1| ribonuclease HII [Anaeromyxobacter dehalogenans 2CP-1]
gi|219953275|gb|ACL63659.1| Ribonuclease H [Anaeromyxobacter dehalogenans 2CP-1]
Length = 283
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 29/156 (18%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAG P+ GP+V G P Y+ DSK L +RE L ED+K N +V
Sbjct: 80 VAGVDEAGMAPLAGPVVAGACVLPLDYRPR----GIDDSKQLDRAERERLAEDIKRN-AV 134
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
WAV D E+ +++N + G+L +D + ++
Sbjct: 135 CWAVARADVEEI-------DRLN---------------IYWAGMLALRRAVDGLSARPEH 172
Query: 136 QAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAK 169
+++ P + F + D+L ++ ASI+AK
Sbjct: 173 LLVDARKLPDLPFPQTPIVHGDALSLTIAAASILAK 208
>gi|335357306|ref|ZP_08549176.1| ribonuclease HII [Lactobacillus animalis KCTC 3501]
Length = 254
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF 66
+ GIDE GRGP+ GP+V + P +Q L +N DSK L E+KREEL+
Sbjct: 71 VAGIDEVGRGPLAGPVVTAAVILPHDFQ--LVEVN--DSKQLSEKKREELY 117
>gi|187735061|ref|YP_001877173.1| Ribonuclease H [Akkermansia muciniphila ATCC BAA-835]
gi|187425113|gb|ACD04392.1| Ribonuclease H [Akkermansia muciniphila ATCC BAA-835]
Length = 214
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF 66
C+ G+DEAGRGP+ GP+V G + P ++ L LN DSK L KRE LF
Sbjct: 22 CVAGVDEAGRGPLAGPVVAGAVILPVLAEE-LTGLN--DSKQLTAAKRERLF 70
>gi|398347238|ref|ZP_10531941.1| ribonuclease H [Leptospira broomii str. 5399]
Length = 221
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 76/168 (45%), Gaps = 29/168 (17%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCL-YCPCSYQQTLATLNFA---DSKTLKEEKREELFEDL 69
PC GIDEAGRGP GP+ + + P + L N + DSK L E KRE L+ +
Sbjct: 19 PC--GIDEAGRGPYAGPLSLALVAFSPEILESILVGKNLSGLNDSKKLSESKREMLYSQI 76
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKIN---LNEISHDSAIGLITRVLNIGILLTEVYL 126
+ S+ + S +++N IN L I + L T + +G LT + +
Sbjct: 77 RDVASICCHTFV------SHSFIDRNGINRAVLEGIWKCYRMALRTPIAIVGGSLT-LLI 129
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSK-----KADSLYPVVSGASIVAK 169
D + KY P KF+ SK K DS +S ASI+AK
Sbjct: 130 DGNYNFSKY--------PESKFISSKSHYYTKGDSRIVSISAASIIAK 169
>gi|325294887|ref|YP_004281401.1| ribonuclease H [Desulfurobacterium thermolithotrophum DSM 11699]
gi|325065335|gb|ADY73342.1| Ribonuclease H [Desulfurobacterium thermolithotrophum DSM 11699]
Length = 236
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF 66
I GIDEAGRGP+ GP+V + P Q++ F DSK L E++R+ELF
Sbjct: 22 IAGIDEAGRGPLAGPVVAAAVIFP----QSVIPFLFKDSKKLTEKRRKELF 68
>gi|15598838|ref|NP_252332.1| ribonuclease HII [Pseudomonas aeruginosa PAO1]
gi|418586123|ref|ZP_13150169.1| ribonuclease HII [Pseudomonas aeruginosa MPAO1/P1]
gi|418589449|ref|ZP_13153371.1| ribonuclease HII [Pseudomonas aeruginosa MPAO1/P2]
gi|421518185|ref|ZP_15964859.1| ribonuclease HII [Pseudomonas aeruginosa PAO579]
gi|451987778|ref|ZP_21935930.1| Ribonuclease HII [Pseudomonas aeruginosa 18A]
gi|37999786|sp|Q9HXY9.1|RNH2_PSEAE RecName: Full=Ribonuclease HII; Short=RNase HII
gi|9949802|gb|AAG07030.1|AE004784_3 ribonuclease HII [Pseudomonas aeruginosa PAO1]
gi|375043797|gb|EHS36413.1| ribonuclease HII [Pseudomonas aeruginosa MPAO1/P1]
gi|375051683|gb|EHS44149.1| ribonuclease HII [Pseudomonas aeruginosa MPAO1/P2]
gi|404347667|gb|EJZ74016.1| ribonuclease HII [Pseudomonas aeruginosa PAO579]
gi|451754537|emb|CCQ88453.1| Ribonuclease HII [Pseudomonas aeruginosa 18A]
Length = 201
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 29/163 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DE GRGP+ GP+V + + L DSK L E +RE LFE+++ ++
Sbjct: 14 VAGVDEVGRGPLCGPVVTAAVI----LDPSRPILGLNDSKKLSEARREALFEEIR-EKAL 68
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W + + E+ +++N I H + + + V + ++ +D
Sbjct: 69 AWCIARAEVEEI-------DRLN---ILHATMLAMQRAVEGLSVIPRLALID-------- 110
Query: 136 QAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKRSNFERM 176
R P + + K DS P ++ ASI+AK S M
Sbjct: 111 ----GNRCPKLAVPCAPVVKGDSQVPAIAAASILAKVSRDREM 149
>gi|308274702|emb|CBX31301.1| Ribonuclease HII [uncultured Desulfobacterium sp.]
Length = 214
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 75/168 (44%), Gaps = 37/168 (22%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+V + P SY T DSK L +KR+ L+ ++ +V
Sbjct: 20 IAGVDEAGRGPIAGPVVSAAVILPFSYPIEGVT----DSKKLTPKKRDYLY-NIIYERAV 74
Query: 76 GWAVDIIDPRE------LSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ I+DP E L A +L+ + I + +S +S LI + I L++
Sbjct: 75 SIGIGIVDPAEIERINILRASLLSMS-IAVQNLSPESDYLLIDGIFPIPHTLSQ------ 127
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
Q P DSL V+ ASIVAK + M+
Sbjct: 128 -----------QPIP--------HGDSLSLSVAAASIVAKVTRDRLME 156
>gi|188996137|ref|YP_001930388.1| ribonuclease H [Sulfurihydrogenibium sp. YO3AOP1]
gi|229564299|sp|B2V752.1|RNH2_SULSY RecName: Full=Ribonuclease HII; Short=RNase HII
gi|188931204|gb|ACD65834.1| Ribonuclease H [Sulfurihydrogenibium sp. YO3AOP1]
Length = 197
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
I+GIDEAGRGP+ GP+V + P + + T DSK L E++RE LFE K++D
Sbjct: 16 IVGIDEAGRGPLAGPLVIASVIFPKHQKPFIHT----DSKGLSEKEREYLFE--KIHD 67
>gi|312143696|ref|YP_003995142.1| Ribonuclease H [Halanaerobium hydrogeniformans]
gi|311904347|gb|ADQ14788.1| Ribonuclease H [Halanaerobium hydrogeniformans]
Length = 265
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 16/85 (18%)
Query: 4 EAALPKWA----------SN--PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNF 51
EA + KW SN ++GIDEAGRGP+ GP+V + T
Sbjct: 57 EAVIAKWVNMNSLQEKLESNGYQAVIGIDEAGRGPLAGPVVAAAVLLDS----TKPIYGL 112
Query: 52 ADSKTLKEEKREELFEDLKVNDSVG 76
DSK L EKRE+L E++K VG
Sbjct: 113 DDSKKLSREKREKLLEEIKKKAKVG 137
>gi|269127623|ref|YP_003300993.1| Ribonuclease H [Thermomonospora curvata DSM 43183]
gi|268312581|gb|ACY98955.1| Ribonuclease H [Thermomonospora curvata DSM 43183]
Length = 232
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 2 GSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEK 61
G E AL +P + G+DEAGRG GP+V + P + + L DSK L +
Sbjct: 17 GLERALQHAGFSP-VAGVDEAGRGACAGPLVVAAVILPSGRRALIDGLT--DSKLLTARR 73
Query: 62 REELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKIN 98
REEL+ + V +V WA II ++ L++ I
Sbjct: 74 REELYAQI-VERAVAWATVIIPRHDIDRLGLHQCNIT 109
>gi|229098306|ref|ZP_04229253.1| Ribonuclease [Bacillus cereus Rock3-29]
gi|229117323|ref|ZP_04246701.1| Ribonuclease [Bacillus cereus Rock1-3]
gi|407706296|ref|YP_006829881.1| hypothetical protein MC28_3060 [Bacillus thuringiensis MC28]
gi|423378324|ref|ZP_17355608.1| ribonuclease HII [Bacillus cereus BAG1O-2]
gi|423448342|ref|ZP_17425221.1| ribonuclease HII [Bacillus cereus BAG5O-1]
gi|423464506|ref|ZP_17441274.1| ribonuclease HII [Bacillus cereus BAG6O-1]
gi|423540883|ref|ZP_17517274.1| ribonuclease HII [Bacillus cereus HuB4-10]
gi|423547121|ref|ZP_17523479.1| ribonuclease HII [Bacillus cereus HuB5-5]
gi|228666223|gb|EEL21687.1| Ribonuclease [Bacillus cereus Rock1-3]
gi|228685204|gb|EEL39135.1| Ribonuclease [Bacillus cereus Rock3-29]
gi|401128936|gb|EJQ36619.1| ribonuclease HII [Bacillus cereus BAG5O-1]
gi|401172071|gb|EJQ79292.1| ribonuclease HII [Bacillus cereus HuB4-10]
gi|401178842|gb|EJQ86015.1| ribonuclease HII [Bacillus cereus HuB5-5]
gi|401636590|gb|EJS54344.1| ribonuclease HII [Bacillus cereus BAG1O-2]
gi|402420773|gb|EJV53044.1| ribonuclease HII [Bacillus cereus BAG6O-1]
gi|407383981|gb|AFU14482.1| Ribonuclease [Bacillus thuringiensis MC28]
Length = 257
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + DSK L E KRE ++++K ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPDDF----YIPGLDDSKKLSEAKRERFYDEIKAQ-AI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DEINIYQATKQA---MLDAVANLSCTPQYLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL P + K D+ +S ASI+AK
Sbjct: 173 --KLPTSIPQTSII---KGDAKSVSISAASIIAK 201
>gi|410464350|ref|ZP_11317795.1| ribonuclease HII [Desulfovibrio magneticus str. Maddingley MBC34]
gi|409982548|gb|EKO38992.1| ribonuclease HII [Desulfovibrio magneticus str. Maddingley MBC34]
Length = 210
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 17/162 (10%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
A N + G+DEAGRG + GP+ G + P +Y DSK L KRE L +K
Sbjct: 5 AKNRLVAGVDEAGRGCLAGPVAAGAVILPEAYDLP----GLTDSKKLSAAKREALAPAIK 60
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
++ WAV + P E+ ++IN+ + + +A+ L + L + G
Sbjct: 61 AQ-ALAWAVAFVWPDEI-------DRINILQATF-AAMAKALAHLRLAPGLARID----G 107
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSN 172
+ +A+L ++ D+ P +S ASI+AK +
Sbjct: 108 NKTIPEARLGLLAAKLRQECVIGGDASVPAISAASILAKTAR 149
>gi|47093922|ref|ZP_00231661.1| ribonuclease HII [Listeria monocytogenes str. 4b H7858]
gi|47017708|gb|EAL08502.1| ribonuclease HII [Listeria monocytogenes str. 4b H7858]
Length = 204
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP+ GP+V + P + + + DSK L E KR+ LFE +K +++
Sbjct: 16 IAGVDEVGRGPLAGPVVAAAVILPADF----SVVGINDSKQLSEAKRDALFETIK-KEAI 70
Query: 76 GWAVDIID 83
V II+
Sbjct: 71 AIGVGIIE 78
>gi|452856514|ref|YP_007498197.1| ribonuclease HIII [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
gi|452080774|emb|CCP22539.1| ribonuclease HIII [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
Length = 313
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 9/176 (5%)
Query: 6 ALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREEL 65
A P ++ ++G DE G G GP+ C Y S + L DSK LK+ + E+
Sbjct: 86 APPAGIASMSVIGSDEVGTGDYFGPITVACAYADKSKLSLMKELGVKDSKDLKDPQIIEI 145
Query: 66 FEDLKVNDSVGWAVDIIDPR---ELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLT 122
+ L ++ +++ ++ ++ K +++ K + + H+ AI + + +N G+
Sbjct: 146 AKLL--IKTIPYSLLVLKNEKYNQMQEKGMSQGK--MKALLHNQAISNLLKKMN-GVKPE 200
Query: 123 EVYLDTVGDAEKYQAKLSQR-FPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
+ +D D Y LS R K S KA+S++ V+ ASI+A+ S MD
Sbjct: 201 AILIDQFADPGIYFKHLSGRDIVKEKTFFSTKAESIHLSVAAASIIARYSFLIEMD 256
>gi|423623087|ref|ZP_17598865.1| ribonuclease HII [Bacillus cereus VD148]
gi|401259860|gb|EJR66034.1| ribonuclease HII [Bacillus cereus VD148]
Length = 257
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + DSK L E KRE ++++K ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPDDF----YIPGLDDSKKLSEAKRERFYDEIKAQ-AI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DEINIYQATKQA---MLDAVANLSCTPQYLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL P + K D+ +S ASI+AK
Sbjct: 173 --KLPTSIPQTSII---KGDAKSVSISAASIIAK 201
>gi|393795311|ref|ZP_10378675.1| ribonuclease HII [Candidatus Nitrosoarchaeum limnia BG20]
Length = 205
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 10/155 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+D+AGRG +LGP+V + S L L DSK L + REEL++ + ++
Sbjct: 3 ICGVDDAGRGSMLGPLVIAGVSLKKSDVSKLKLLGVKDSKQLTPKLREELYKKI-ISLVD 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
+ V I P+ + A + ++++H A + +L + + Y+D+ + +
Sbjct: 62 NYYVAKISPKLIDA------SVKKHDLNHLEAKYMAKVILKLNPDTS--YVDSCDVNPNR 113
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+ ++S+ + K ADS + VVS ASI+AK
Sbjct: 114 FGKEISKLSNNKKIRSYHHADSRFIVVSAASIIAK 148
>gi|336065754|ref|YP_004560612.1| ribonuclease HII [Erysipelothrix rhusiopathiae str. Fujisawa]
gi|334295700|dbj|BAK31571.1| ribonuclease HII [Erysipelothrix rhusiopathiae str. Fujisawa]
Length = 204
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 48/92 (52%), Gaps = 15/92 (16%)
Query: 1 MGS---EAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTL 57
MGS E + W ++GIDEAGRGP+ GP V + P Y A +N DSK L
Sbjct: 1 MGSLIDEFEVNYWEQGKLVVGIDEAGRGPMAGPCVVSGVIFPKGYYD--ARIN--DSKQL 56
Query: 58 KEEKREELFEDLKVNDSVGWA------VDIID 83
E++R+EL +++N W VDIID
Sbjct: 57 SEKQRDELVSIIELN--ALWTFTEIIPVDIID 86
>gi|444912781|ref|ZP_21232941.1| Ribonuclease HII [Cystobacter fuscus DSM 2262]
gi|444716705|gb|ELW57548.1| Ribonuclease HII [Cystobacter fuscus DSM 2262]
Length = 272
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 26/155 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE-KREELFEDLKVNDS 74
+ G+DEAGRGP+ GP+V P ++ L L+ DSK + +E +R+E+ E +K +
Sbjct: 70 VAGVDEAGRGPLAGPVVAAAAILPRGWK--LEGLD--DSKKIADESRRDEMAEAIK-QGA 124
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
V WAV +P E+ +++N I S + + + +GI + V LD E
Sbjct: 125 VAWAVGQAEPEEI-------DRLN---IRRASLLAMHRALQGLGIQPSFVLLDAFTIPE- 173
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
L QR ++ K D+L ++ AS++AK
Sbjct: 174 --CTLPQR-----GII--KGDALSLSIAAASVLAK 199
>gi|255002889|ref|ZP_05277853.1| ribonuclease HII [Anaplasma marginale str. Puerto Rico]
Length = 238
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 34/166 (20%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCP---CSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
I+G+DE G G + GP+V +Y P C Y + + DSK L +KREELF K+
Sbjct: 21 IVGVDEVGYGAIAGPVVAAAVYLPERECDYIK-----DIKDSKALSSKKREELF--CKIT 73
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ V RE+ + N+ SH S + + N+G+ V +D
Sbjct: 74 AHAKYGVGFARVREI-------EQHNILVASHIS----MKTLQNLGVKADLVLVDG---- 118
Query: 133 EKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAK--RSNFER 175
++ P ++K +V K DS+ ++ ASI+AK R F R
Sbjct: 119 ----SRAPAGLPWAVKTIV--KGDSISTSIAAASIIAKVTRDRFMR 158
>gi|238810213|dbj|BAH70003.1| hypothetical protein [Mycoplasma fermentans PG18]
Length = 217
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 74/154 (48%), Gaps = 25/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+G+DEAGRG GP+V GC+ P ++ L DSK L +++REE E + + +++
Sbjct: 34 IVGLDEAGRGCCAGPLVVGCVIMPQNFNHPL----IKDSKQLSQKQREEALEII-LENAI 88
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
II+ +E+ LN S IG+ R +N L T+ L + D EK
Sbjct: 89 ETVTTIINAQEVD---------QLNP-KQASRIGM-QRCIN--KLNTKPEL-VITDFEKI 134
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
P I V K D L V+ ASI+AK
Sbjct: 135 N---DINIPQINLV---KGDQLSINVAAASILAK 162
>gi|449102609|ref|ZP_21739357.1| ribonuclease HII [Treponema denticola AL-2]
gi|448966198|gb|EMB46856.1| ribonuclease HII [Treponema denticola AL-2]
Length = 198
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 8/65 (12%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREE----LFEDLKVND 73
GIDEAGRGP+ GP+ + P S+ ++ DSK L E+KREE ++ D V
Sbjct: 4 GIDEAGRGPLAGPVTAPAVILPSSFDFSI----LKDSKKLTEKKREEVRKTIYADPNVLW 59
Query: 74 SVGWA 78
S+GWA
Sbjct: 60 SIGWA 64
>gi|15676119|ref|NP_273250.1| ribonuclease HII [Neisseria meningitidis MC58]
gi|385852400|ref|YP_005898914.1| ribonuclease HII [Neisseria meningitidis H44/76]
gi|416181345|ref|ZP_11611591.1| ribonuclease HII [Neisseria meningitidis M13399]
gi|427826476|ref|ZP_18993527.1| ribonuclease HII family protein [Neisseria meningitidis H44/76]
gi|433464185|ref|ZP_20421679.1| ribonuclease HII family protein [Neisseria meningitidis NM422]
gi|433487390|ref|ZP_20444569.1| ribonuclease HII family protein [Neisseria meningitidis M13255]
gi|433489564|ref|ZP_20446703.1| ribonuclease HII family protein [Neisseria meningitidis NM418]
gi|433504170|ref|ZP_20461115.1| ribonuclease HII family protein [Neisseria meningitidis 9506]
gi|433506245|ref|ZP_20463164.1| ribonuclease HII family protein [Neisseria meningitidis 9757]
gi|433508289|ref|ZP_20465175.1| ribonuclease HII family protein [Neisseria meningitidis 12888]
gi|433510462|ref|ZP_20467305.1| ribonuclease HII family protein [Neisseria meningitidis 4119]
gi|11387100|sp|Q9K1G1.1|RNH2_NEIMB RecName: Full=Ribonuclease HII; Short=RNase HII
gi|7225412|gb|AAF40649.1| ribonuclease HII [Neisseria meningitidis MC58]
gi|316985719|gb|EFV64665.1| ribonuclease HII family protein [Neisseria meningitidis H44/76]
gi|325135118|gb|EGC57745.1| ribonuclease HII [Neisseria meningitidis M13399]
gi|325199404|gb|ADY94859.1| ribonuclease HII [Neisseria meningitidis H44/76]
gi|389604811|emb|CCA43737.1| ribonuclease HII [Neisseria meningitidis alpha522]
gi|432205995|gb|ELK62010.1| ribonuclease HII family protein [Neisseria meningitidis NM422]
gi|432226155|gb|ELK81888.1| ribonuclease HII family protein [Neisseria meningitidis M13255]
gi|432230560|gb|ELK86235.1| ribonuclease HII family protein [Neisseria meningitidis NM418]
gi|432243553|gb|ELK99064.1| ribonuclease HII family protein [Neisseria meningitidis 9506]
gi|432244261|gb|ELK99756.1| ribonuclease HII family protein [Neisseria meningitidis 9757]
gi|432249940|gb|ELL05338.1| ribonuclease HII family protein [Neisseria meningitidis 12888]
gi|432250530|gb|ELL05923.1| ribonuclease HII family protein [Neisseria meningitidis 4119]
Length = 194
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 69/157 (43%), Gaps = 36/157 (22%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGP++G + + P +T DSK L E+KR+ L E +K N +V W
Sbjct: 7 GVDEAGRGPLVGSVFAAAVILP----ETFDLPGLTDSKKLSEKKRDALAEMIK-NQAVEW 61
Query: 78 AVDIIDPRE------LSAKML------------------NKNKI--NLNEISHDSAIGLI 111
V P E L A ML + N+I +LN I ++ +
Sbjct: 62 HVAAASPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLN-IPAEAVVKGD 120
Query: 112 TRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKF 148
++++ I V T DAE Y L+QR P F
Sbjct: 121 SKIIEISA--ASVLAKTARDAEMY--ALAQRHPQYGF 153
>gi|406837519|ref|ZP_11097113.1| ribonuclease HII [Lactobacillus vini DSM 20605]
Length = 259
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 27/161 (16%)
Query: 10 W-ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
W A + GIDE GRGP+ GP+V + P + + L DSK L REEL
Sbjct: 66 WQAGKQLVAGIDEVGRGPLAGPVVAAAVILPHDF----SILAVNDSKQLSSHLREELSSQ 121
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
+ + ++ + + D ++ I+ I + I + V + IL ++ +D
Sbjct: 122 I-LATALAVGIGVADNQQ----------IDQANIYQATRIAMKQAVAALKILPQQLIIDA 170
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+ ++ P +K + KAD+ V+ ASIVAK
Sbjct: 171 M--------QIETAIPQLKLI---KADAKSNSVAAASIVAK 200
>gi|406927999|gb|EKD63911.1| ribonuclease HII [uncultured bacterium]
Length = 183
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRGP GP+V + P + + L LN DSK L ++RE LF+ +K + G
Sbjct: 9 IGIDEAGRGPFAGPLVVSACFLPKNIR--LPGLN--DSKKLSLKQRERLFKIIKKRTTYG 64
Query: 77 WAVDIIDPRELSAKMLN 93
+ I RE+ M+N
Sbjct: 65 --IGIATEREVEKGMIN 79
>gi|333397989|ref|ZP_08479802.1| ribonuclease HII [Leuconostoc gelidum KCTC 3527]
gi|406599894|ref|YP_006745240.1| ribonuclease HII [Leuconostoc gelidum JB7]
gi|406371429|gb|AFS40354.1| ribonuclease HII [Leuconostoc gelidum JB7]
Length = 254
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP++ + P ++ ++ DSK L +KREEL+ + + +V
Sbjct: 73 IAGIDEVGRGPLAGPVIAAAVILPSNFH----NIDVIDSKQLSAKKREELYH-IIIEQAV 127
Query: 76 GWAVDIID 83
V ++D
Sbjct: 128 SIGVGVVD 135
>gi|255281039|ref|ZP_05345594.1| ribonuclease HII [Bryantella formatexigens DSM 14469]
gi|255268487|gb|EET61692.1| ribonuclease HII [Marvinbryantia formatexigens DSM 14469]
Length = 252
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 59/102 (57%), Gaps = 19/102 (18%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCP--CSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
I GIDEAGRGP+ GP+V G + P C T+ LN DSK L E+ RE+L++++ +
Sbjct: 72 ICGIDEAGRGPLAGPVVAGAVILPKGC----TIRYLN--DSKQLSEKMREQLYDEI-MER 124
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDS---AIGLIT 112
+V V + P + ++IN+ + ++++ AIG ++
Sbjct: 125 AVAVGVGMASPARI-------DEINILQATYEAMRDAIGALS 159
>gi|448350813|ref|ZP_21539624.1| ribonuclease HII [Natrialba taiwanensis DSM 12281]
gi|445635685|gb|ELY88852.1| ribonuclease HII [Natrialba taiwanensis DSM 12281]
Length = 254
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 11/104 (10%)
Query: 9 KWASNPCIM--GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATL--NFADSKTLKEEKREE 64
+ A++P M G+DEAG+GP LG M ++ +T A L ADSK L +R+E
Sbjct: 10 RSATDPRRMPFGVDEAGKGPALGSMFAAAVHV-----ETDAALPEGIADSKRLAPARRDE 64
Query: 65 LFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAI 108
L + L+ +D +G + I P ++ + N + + +H AI
Sbjct: 65 LADTLRADDRIGIGLAEITPAQIDDPETDMNSLTVR--AHAQAI 106
>gi|386732013|ref|YP_006205509.1| ribonuclease HII [Listeria monocytogenes 07PF0776]
gi|384390771|gb|AFH79841.1| ribonuclease HII [Listeria monocytogenes 07PF0776]
Length = 261
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP+ GP+V + P + + + DSK L E KR+ LFE +K +++
Sbjct: 73 IAGVDEVGRGPLAGPVVAAAVILPADF----SVVGINDSKQLSEAKRDALFETIK-KEAI 127
Query: 76 GWAVDIID 83
V II+
Sbjct: 128 AIGVGIIE 135
>gi|255025707|ref|ZP_05297693.1| ribonuclease HII [Listeria monocytogenes FSL J2-003]
gi|255028970|ref|ZP_05300921.1| ribonuclease HII [Listeria monocytogenes LO28]
Length = 233
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP+ GP+V + P + + + DSK L E KR+ LFE +K +++
Sbjct: 73 IAGVDEVGRGPLAGPVVAAAVILPADF----SVVGINDSKQLSEAKRDALFEKIK-KEAI 127
Query: 76 GWAVDIID 83
V II+
Sbjct: 128 AIGVGIIE 135
>gi|449115883|ref|ZP_21752343.1| ribonuclease HII [Treponema denticola H-22]
gi|448955369|gb|EMB36136.1| ribonuclease HII [Treponema denticola H-22]
Length = 198
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGP+ GP+ + P S+ ++ DSK L E+KREE+ + + + +V W
Sbjct: 4 GIDEAGRGPLAGPVTAPAVILPSSFDFSI----LKDSKKLTEKKREEVRKTIYADPNVIW 59
Query: 78 AV 79
A+
Sbjct: 60 AI 61
>gi|229174503|ref|ZP_04302035.1| Ribonuclease [Bacillus cereus MM3]
gi|228609063|gb|EEK66353.1| Ribonuclease [Bacillus cereus MM3]
Length = 257
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I GIDE GRGP+ GP+V + P ++ + LN DSK L E KRE ++++K +
Sbjct: 73 LIAGIDEVGRGPLAGPVVTAAVVLPENF--YIPGLN--DSKKLSEAKRERFYDEIKAQ-A 127
Query: 75 VGWAVDIIDPR 85
+ V I+ P+
Sbjct: 128 IAIGVGIVSPQ 138
>gi|16803313|ref|NP_464798.1| ribonuclease HII [Listeria monocytogenes EGD-e]
gi|47097416|ref|ZP_00234965.1| ribonuclease HII [Listeria monocytogenes str. 1/2a F6854]
gi|254911948|ref|ZP_05261960.1| ribonuclease HII [Listeria monocytogenes J2818]
gi|254936274|ref|ZP_05267971.1| rnhB [Listeria monocytogenes F6900]
gi|284801658|ref|YP_003413523.1| hypothetical protein LM5578_1411 [Listeria monocytogenes 08-5578]
gi|284994800|ref|YP_003416568.1| hypothetical protein LM5923_1364 [Listeria monocytogenes 08-5923]
gi|386043584|ref|YP_005962389.1| ribonuclease HII [Listeria monocytogenes 10403S]
gi|386046924|ref|YP_005965256.1| rnhB [Listeria monocytogenes J0161]
gi|386050249|ref|YP_005968240.1| ribonuclease HII [Listeria monocytogenes FSL R2-561]
gi|386053526|ref|YP_005971084.1| ribonuclease HII [Listeria monocytogenes Finland 1998]
gi|404283764|ref|YP_006684661.1| ribonuclease HII [Listeria monocytogenes SLCC2372]
gi|404410570|ref|YP_006696158.1| ribonuclease HII [Listeria monocytogenes SLCC5850]
gi|404413349|ref|YP_006698936.1| ribonuclease HII [Listeria monocytogenes SLCC7179]
gi|405758320|ref|YP_006687596.1| ribonuclease HII [Listeria monocytogenes SLCC2479]
gi|38258623|sp|Q8Y7K4.1|RNH2_LISMO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|16410689|emb|CAC99351.1| rnhB [Listeria monocytogenes EGD-e]
gi|47014215|gb|EAL05199.1| ribonuclease HII [Listeria monocytogenes str. 1/2a F6854]
gi|258608863|gb|EEW21471.1| rnhB [Listeria monocytogenes F6900]
gi|284057220|gb|ADB68161.1| hypothetical protein LM5578_1411 [Listeria monocytogenes 08-5578]
gi|284060267|gb|ADB71206.1| hypothetical protein LM5923_1364 [Listeria monocytogenes 08-5923]
gi|293589909|gb|EFF98243.1| ribonuclease HII [Listeria monocytogenes J2818]
gi|345533915|gb|AEO03356.1| rnhB [Listeria monocytogenes J0161]
gi|345536818|gb|AEO06258.1| ribonuclease HII [Listeria monocytogenes 10403S]
gi|346424095|gb|AEO25620.1| ribonuclease HII [Listeria monocytogenes FSL R2-561]
gi|346646177|gb|AEO38802.1| ribonuclease HII [Listeria monocytogenes Finland 1998]
gi|404230396|emb|CBY51800.1| ribonuclease HII [Listeria monocytogenes SLCC5850]
gi|404233266|emb|CBY54669.1| ribonuclease HII [Listeria monocytogenes SLCC2372]
gi|404236202|emb|CBY57604.1| ribonuclease HII [Listeria monocytogenes SLCC2479]
gi|404239048|emb|CBY60449.1| ribonuclease HII [Listeria monocytogenes SLCC7179]
gi|441470943|emb|CCQ20698.1| Ribonuclease HII [Listeria monocytogenes]
gi|441474070|emb|CCQ23824.1| Ribonuclease HII [Listeria monocytogenes N53-1]
Length = 261
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP+ GP+V + P + + + DSK L E KR+ LFE +K +++
Sbjct: 73 IAGVDEVGRGPLAGPVVAAAVILPADF----SVVGINDSKQLSEAKRDALFEKIK-KEAI 127
Query: 76 GWAVDIID 83
V II+
Sbjct: 128 AIGVGIIE 135
>gi|46907500|ref|YP_013889.1| ribonuclease HII [Listeria monocytogenes serotype 4b str. F2365]
gi|226223876|ref|YP_002757983.1| ribonuclease H rnh [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|254824666|ref|ZP_05229667.1| ribonuclease HII [Listeria monocytogenes FSL J1-194]
gi|254852673|ref|ZP_05242021.1| ribonuclease HII [Listeria monocytogenes FSL R2-503]
gi|254932410|ref|ZP_05265769.1| rnhB [Listeria monocytogenes HPB2262]
gi|255520255|ref|ZP_05387492.1| ribonuclease HII [Listeria monocytogenes FSL J1-175]
gi|300765309|ref|ZP_07075293.1| ribonuclease HII [Listeria monocytogenes FSL N1-017]
gi|404280828|ref|YP_006681726.1| ribonuclease HII [Listeria monocytogenes SLCC2755]
gi|404286689|ref|YP_006693275.1| ribonuclease HII [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|405749617|ref|YP_006673083.1| ribonuclease HII [Listeria monocytogenes ATCC 19117]
gi|405752492|ref|YP_006675957.1| ribonuclease HII [Listeria monocytogenes SLCC2378]
gi|406704046|ref|YP_006754400.1| ribonuclease HII [Listeria monocytogenes L312]
gi|417313733|ref|ZP_12100440.1| ribonuclease HII [Listeria monocytogenes J1816]
gi|417317427|ref|ZP_12104045.1| ribonuclease HII [Listeria monocytogenes J1-220]
gi|424714148|ref|YP_007014863.1| Ribonuclease HII [Listeria monocytogenes serotype 4b str. LL195]
gi|424823038|ref|ZP_18248051.1| Ribonuclease HII [Listeria monocytogenes str. Scott A]
gi|67461454|sp|Q720E8.1|RNH2_LISMF RecName: Full=Ribonuclease HII; Short=RNase HII
gi|259494069|sp|C1L2I1.1|RNH2_LISMC RecName: Full=Ribonuclease HII; Short=RNase HII
gi|46880768|gb|AAT04066.1| ribonuclease HII [Listeria monocytogenes serotype 4b str. F2365]
gi|225876338|emb|CAS05047.1| Putative ribonuclease H rnh [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|258605991|gb|EEW18599.1| ribonuclease HII [Listeria monocytogenes FSL R2-503]
gi|293583967|gb|EFF95999.1| rnhB [Listeria monocytogenes HPB2262]
gi|293593905|gb|EFG01666.1| ribonuclease HII [Listeria monocytogenes FSL J1-194]
gi|300513992|gb|EFK41055.1| ribonuclease HII [Listeria monocytogenes FSL N1-017]
gi|328468563|gb|EGF39563.1| ribonuclease HII [Listeria monocytogenes J1816]
gi|328475117|gb|EGF45901.1| ribonuclease HII [Listeria monocytogenes J1-220]
gi|332311718|gb|EGJ24813.1| Ribonuclease HII [Listeria monocytogenes str. Scott A]
gi|404218817|emb|CBY70181.1| ribonuclease HII [Listeria monocytogenes ATCC 19117]
gi|404221692|emb|CBY73055.1| ribonuclease HII [Listeria monocytogenes SLCC2378]
gi|404227463|emb|CBY48868.1| ribonuclease HII [Listeria monocytogenes SLCC2755]
gi|404245618|emb|CBY03843.1| ribonuclease HII [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|406361076|emb|CBY67349.1| ribonuclease HII [Listeria monocytogenes L312]
gi|424013332|emb|CCO63872.1| Ribonuclease HII [Listeria monocytogenes serotype 4b str. LL195]
Length = 261
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP+ GP+V + P + + + DSK L E KR+ LFE +K +++
Sbjct: 73 IAGVDEVGRGPLAGPVVAAAVILPADF----SVVGINDSKQLSEAKRDALFETIK-KEAI 127
Query: 76 GWAVDIID 83
V II+
Sbjct: 128 AIGVGIIE 135
>gi|343491942|ref|ZP_08730321.1| ribonuclease H II [Mycoplasma columbinum SF7]
gi|343128396|gb|EGV00198.1| ribonuclease H II [Mycoplasma columbinum SF7]
Length = 199
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 13/87 (14%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W I+G+DEAGRG GP+V + + + L+ DSK L +KREELF+ +
Sbjct: 9 WNEYDLILGLDEAGRGCCAGPLVVAGVI----FNKNYVNLDINDSKKLNSKKREELFKII 64
Query: 70 KVNDSVGWA--------VDIIDPRELS 88
K D++ + VD+ +P++ S
Sbjct: 65 K-RDALAYKIVVYDANYVDLFNPKQTS 90
>gi|253702077|ref|YP_003023266.1| ribonuclease HII [Geobacter sp. M21]
gi|259494065|sp|C6E5I4.1|RNH2_GEOSM RecName: Full=Ribonuclease HII; Short=RNase HII
gi|251776927|gb|ACT19508.1| Ribonuclease H [Geobacter sp. M21]
Length = 230
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+V + P L +N DSK L EEKREELF D+ +++
Sbjct: 30 IAGIDEAGRGPLAGPVVAAAVILPPGL--LLPGVN--DSKQLTEEKREELF-DVIHREAL 84
Query: 76 GWAVDIID 83
V I D
Sbjct: 85 AVGVGIGD 92
>gi|254828636|ref|ZP_05233323.1| rnhB [Listeria monocytogenes FSL N3-165]
gi|258601035|gb|EEW14360.1| rnhB [Listeria monocytogenes FSL N3-165]
Length = 261
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP+ GP+V + P + + + DSK L E KR+ LFE +K +++
Sbjct: 73 IAGVDEVGRGPLAGPVVAAAVILPADF----SVVGINDSKQLSEAKRDALFEKIK-KEAI 127
Query: 76 GWAVDIID 83
V II+
Sbjct: 128 AIGVGIIE 135
>gi|261822585|ref|YP_003260691.1| ribonuclease HII [Pectobacterium wasabiae WPP163]
gi|261606598|gb|ACX89084.1| Ribonuclease H [Pectobacterium wasabiae WPP163]
gi|385872899|gb|AFI91419.1| Ribonuclease HII [Pectobacterium sp. SCC3193]
Length = 198
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 29/157 (18%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI G+DE GRGP++G +V + T + ADSK L E++R L++++ +
Sbjct: 12 CIAGVDEVGRGPLVGAVVTAAVIL----DPTRPIVGLADSKKLSEKRRLALYDEIN-EKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ +++N I H + + + V + I+ V +D
Sbjct: 67 LAWSLGRAEPEEI-------DQLN---ILHATMLAMQRAVAGLSIVPDFVLID------- 109
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAK 169
R P++ K DS +S ASI+AK
Sbjct: 110 -----GNRCPALPMRAQAVVKGDSRVAEISAASIMAK 141
>gi|225568157|ref|ZP_03777182.1| hypothetical protein CLOHYLEM_04231 [Clostridium hylemonae DSM
15053]
gi|225163110|gb|EEG75729.1| hypothetical protein CLOHYLEM_04231 [Clostridium hylemonae DSM
15053]
Length = 219
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V G + P + L DSK L E+KRE L++++ + +V
Sbjct: 39 ICGIDEVGRGPLAGPVVAGAVILP----KDDPVLYLNDSKKLSEKKREMLYDEI-MEKAV 93
Query: 76 GWAVDIIDPREL 87
+ I+ P+ +
Sbjct: 94 ATGIGIVGPQRI 105
>gi|315282093|ref|ZP_07870581.1| ribonuclease HII [Listeria marthii FSL S4-120]
gi|313614263|gb|EFR87919.1| ribonuclease HII [Listeria marthii FSL S4-120]
Length = 262
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP+ GP+V + P + + + DSK L E KR+ LFE +K +++
Sbjct: 73 IAGVDEVGRGPLAGPVVAAAVILPADF----SIVGINDSKQLSEAKRDALFETIKA-EAI 127
Query: 76 GWAVDIID 83
V II+
Sbjct: 128 AIGVGIIE 135
>gi|282852052|ref|ZP_06261410.1| ribonuclease HII [Lactobacillus gasseri 224-1]
gi|282556812|gb|EFB62416.1| ribonuclease HII [Lactobacillus gasseri 224-1]
Length = 250
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W + + G+DE GRGP+ GP+V + P ++ ++ DSK L +KR+ELF +
Sbjct: 62 WQKSQLVAGVDEVGRGPLAGPVVTAAVILPHNFD----LIDVNDSKKLSPKKRKELFPKI 117
Query: 70 ---KVNDSVGWA-VDIID 83
V+ VG A D+ID
Sbjct: 118 LAKAVSVGVGLANNDVID 135
>gi|385265752|ref|ZP_10043839.1| ribonuclease HIII [Bacillus sp. 5B6]
gi|394991847|ref|ZP_10384645.1| ribonuclease HIII [Bacillus sp. 916]
gi|385150248|gb|EIF14185.1| ribonuclease HIII [Bacillus sp. 5B6]
gi|393807392|gb|EJD68713.1| ribonuclease HIII [Bacillus sp. 916]
Length = 313
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 9/176 (5%)
Query: 6 ALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREEL 65
A P ++ ++G DE G G GP+ C Y S + L DSK LK+ + E+
Sbjct: 86 APPAGIASMSVIGSDEVGTGDYFGPITVACAYADKSKLSLMKELGVKDSKDLKDPQIIEI 145
Query: 66 FEDLKVNDSVGWAVDIIDPR---ELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLT 122
+ L ++ +++ ++ ++ K +++ K + + H+ AI + R +N G+
Sbjct: 146 AKLL--IKTIPYSLLVLKNEKYNQMQEKGMSQGK--MKALLHNQAISNLLRKMN-GVKPE 200
Query: 123 EVYLDTVGDAEKYQAKLSQR-FPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
+ +D + Y LS R K S KA+S++ V+ ASI+A+ S MD
Sbjct: 201 AILIDQFAEPGIYFKHLSGRDIVKEKTFFSTKAESIHLSVAAASIIARYSFLIEMD 256
>gi|430810424|ref|ZP_19437539.1| ribonuclease HII [Cupriavidus sp. HMR-1]
gi|429497115|gb|EKZ95658.1| ribonuclease HII [Cupriavidus sp. HMR-1]
Length = 226
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 69/157 (43%), Gaps = 32/157 (20%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGP+ GP+ + + Q ADSK L EKRE LF+ + ++GW
Sbjct: 28 GVDEAGRGPLAGPVYAAAVVLNPARQ----IRGLADSKILSAEKREALFDRI-CEHALGW 82
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI---GILLTEVYLDTVGDAEK 134
+ SA + + IN I H S + + V + G++ V +D
Sbjct: 83 HI-------ASASVEEIDSIN---ILHASMLAMQRAVQGLAASGVIPDLVQVD------- 125
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAK 169
R P + F V K D+ +S ASI+AK
Sbjct: 126 -----GNRCPQVAFPVEAIVKGDAKVRAISAASILAK 157
>gi|304388999|ref|ZP_07371046.1| ribonuclease HII [Neisseria meningitidis ATCC 13091]
gi|421537233|ref|ZP_15983421.1| ribonuclease HII [Neisseria meningitidis 93003]
gi|304337133|gb|EFM03320.1| ribonuclease HII [Neisseria meningitidis ATCC 13091]
gi|402319710|gb|EJU55215.1| ribonuclease HII [Neisseria meningitidis 93003]
Length = 194
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 68/157 (43%), Gaps = 36/157 (22%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGP++G + + P +T DSK L E+KR+ L E +K N + W
Sbjct: 7 GVDEAGRGPLVGSVFAAAVILP----ETFDLPGLTDSKKLSEKKRDTLAEMIK-NQAAAW 61
Query: 78 AVDIIDPRE------LSAKML------------------NKNKI--NLNEISHDSAIGLI 111
V P E L A ML + N+I +LN I ++ +
Sbjct: 62 HVSAATPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNRIPEHLN-IPAEAVVKGD 120
Query: 112 TRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKF 148
++++ I V T DAE Y L+QR P F
Sbjct: 121 SKIIEISA--ASVLAKTARDAEMY--ALAQRHPQYGF 153
>gi|432677779|ref|ZP_19913209.1| ribonuclease HII [Escherichia coli KTE142]
gi|431207961|gb|ELF06191.1| ribonuclease HII [Escherichia coli KTE142]
Length = 198
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 29/162 (17%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
+ + G+DE GRGP++G +V + + + +A LN DSK L E++R L+E++
Sbjct: 6 YPHTQLVAGVDEVGRGPLVGAVVTAAVILDPA--RPIAGLN--DSKKLSEKRRMALYEEI 61
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
K ++ W++ +P E+ +++N I H + + + V + I V +D
Sbjct: 62 K-EKALSWSLGRAEPHEI-------DELN---ILHATMLAMQRAVAGLHIAPEYVLID-- 108
Query: 130 GDAEKYQAKLSQRFPSIKF--VVSKKADSLYPVVSGASIVAK 169
R P + + K DS P +S ASI+AK
Sbjct: 109 ----------GNRCPKLPMPAMAVVKGDSRVPEISAASILAK 140
>gi|56416548|ref|YP_153622.1| ribonuclease HII [Anaplasma marginale str. St. Maries]
gi|56387780|gb|AAV86367.1| ribonuclease HII [Anaplasma marginale str. St. Maries]
Length = 339
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 33/166 (19%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCP---CSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
I+G+DE G G + GP+V +Y P C Y + + DSK L +KREELF K+
Sbjct: 121 IVGVDEVGYGAIAGPVVAAAVYLPERECDYIK-----DIKDSKALSSKKREELF--CKIT 173
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ V RE+ + N+ SH I + + N+G+ V +D
Sbjct: 174 AHAKYGVGFARVREI-------EQHNILVASH---ISMKRALQNLGVKADLVLVDG---- 219
Query: 133 EKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAK--RSNFER 175
++ P ++K +V K DS+ ++ ASI+AK R F R
Sbjct: 220 ----SRAPAGLPWAVKTIV--KGDSISTSIAAASIIAKVTRDRFMR 259
>gi|431077721|ref|ZP_19495186.1| ribonuclease HIII [Enterococcus faecium E1604]
gi|430566136|gb|ELB05257.1| ribonuclease HIII [Enterococcus faecium E1604]
Length = 305
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 9/177 (5%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREE 64
++LPK S ++G DE G G GP+ Y L L DSK LK+ + +
Sbjct: 80 SSLPKNISQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQ 139
Query: 65 LFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI----GIL 120
L + LK +++ + + ++ P + + N + + H+ AI L+ + + IL
Sbjct: 140 LADVLK--ETIPYKLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPEKPEAIL 197
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
+ + + + +KY A+L + K K + + V+ ASI+++ S E +D
Sbjct: 198 IDQFTPE--ANFKKY-ARLEKNHLQEKLYFVTKGEQYHLAVAAASIISRASFLEELD 251
>gi|431112288|ref|ZP_19497664.1| ribonuclease HIII [Enterococcus faecium E1613]
gi|430569242|gb|ELB08259.1| ribonuclease HIII [Enterococcus faecium E1613]
Length = 305
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 9/177 (5%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREE 64
++LPK S ++G DE G G GP+ Y L L DSK LK+ + +
Sbjct: 80 SSLPKNISQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQ 139
Query: 65 LFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI----GIL 120
L + LK +++ + + ++ P + + N + + H+ AI L+ + + IL
Sbjct: 140 LADVLK--ETIPYKLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPEKPEAIL 197
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
+ + + + +KY A+L + K K + + V+ ASI+++ S E +D
Sbjct: 198 IDQFTPE--ANFKKY-ARLEKNHLQEKLYFVTKGEQYHLAVAAASIISRASFLEELD 251
>gi|423441432|ref|ZP_17418338.1| ribonuclease HII [Bacillus cereus BAG4X2-1]
gi|423533848|ref|ZP_17510266.1| ribonuclease HII [Bacillus cereus HuB2-9]
gi|402418093|gb|EJV50393.1| ribonuclease HII [Bacillus cereus BAG4X2-1]
gi|402464067|gb|EJV95767.1| ribonuclease HII [Bacillus cereus HuB2-9]
Length = 257
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 26/154 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + DSK L E KRE ++++K ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPDDF----YIPGLDDSKKLSEAKRERFYDEIKAQ-AI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DEINIYQATKKA---MLDAVANLSCTPQYLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
KL P + K D+ +S ASI+AK
Sbjct: 173 --KLPTSIPQTSII---KGDAKSVSISAASIIAK 201
>gi|373494760|ref|ZP_09585359.1| ribonuclease HII [Eubacterium infirmum F0142]
gi|371967804|gb|EHO85272.1| ribonuclease HII [Eubacterium infirmum F0142]
Length = 222
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
I G+DE GRGP+ GP+V C + + + + DSK L E+KRE LF+++K
Sbjct: 32 IAGVDEVGRGPLAGPVVAAA----CIFDRDVDIVGIDDSKKLSEKKRERLFDEIK 82
>gi|293570968|ref|ZP_06682012.1| ribonuclease hiii [Enterococcus faecium E980]
gi|431737008|ref|ZP_19525964.1| ribonuclease HIII [Enterococcus faecium E1972]
gi|291608952|gb|EFF38230.1| ribonuclease hiii [Enterococcus faecium E980]
gi|430599384|gb|ELB37090.1| ribonuclease HIII [Enterococcus faecium E1972]
Length = 305
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 9/177 (5%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREE 64
++LPK S ++G DE G G GP+ Y L L DSK LK+ + +
Sbjct: 80 SSLPKNISQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQ 139
Query: 65 LFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI----GIL 120
L + LK +++ + + ++ P + + N + + H+ AI L+ + + IL
Sbjct: 140 LADVLK--ETIPYKLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPEKPEAIL 197
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
+ + + + +KY A+L + K K + + V+ ASI+++ S E +D
Sbjct: 198 IDQFTPE--ANFKKY-ARLEKNHLQEKLYFVTKGEQYHLAVAAASIISRASFLEELD 251
>gi|257886734|ref|ZP_05666387.1| ribonuclease HIII [Enterococcus faecium 1,141,733]
gi|257895300|ref|ZP_05674953.1| ribonuclease HIII [Enterococcus faecium Com12]
gi|293378171|ref|ZP_06624340.1| ribonuclease HIII [Enterococcus faecium PC4.1]
gi|431033422|ref|ZP_19491268.1| ribonuclease HIII [Enterococcus faecium E1590]
gi|431757248|ref|ZP_19545879.1| ribonuclease HIII [Enterococcus faecium E3083]
gi|257822788|gb|EEV49720.1| ribonuclease HIII [Enterococcus faecium 1,141,733]
gi|257831865|gb|EEV58286.1| ribonuclease HIII [Enterococcus faecium Com12]
gi|292643035|gb|EFF61176.1| ribonuclease HIII [Enterococcus faecium PC4.1]
gi|430564523|gb|ELB03707.1| ribonuclease HIII [Enterococcus faecium E1590]
gi|430619537|gb|ELB56364.1| ribonuclease HIII [Enterococcus faecium E3083]
Length = 305
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 9/177 (5%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREE 64
++LPK S ++G DE G G GP+ Y L L DSK LK+ + +
Sbjct: 80 SSLPKNISQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQ 139
Query: 65 LFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI----GIL 120
L + LK +++ + + ++ P + + N + + H+ AI L+ + + IL
Sbjct: 140 LADILK--ETIPYKLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPEKPEAIL 197
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
+ + + + +KY A+L + K K + + V+ ASI+++ S E +D
Sbjct: 198 IDQFTPE--ANFKKY-ARLEKNHLQEKLYFVTKGEQYHLAVAAASIISRASFLEELD 251
>gi|452975418|gb|EME75237.1| ribonuclease HIII [Bacillus sonorensis L12]
Length = 313
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 81/174 (46%), Gaps = 9/174 (5%)
Query: 8 PKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE 67
P+ + ++G DE G G GPM C+Y + L L DSK LK+ + ++
Sbjct: 90 PEGIGSMSVIGSDEVGTGDYFGPMTVACVYADKAKHPLLQELGVKDSKHLKDPQIVQIAR 149
Query: 68 DLKVNDSVGWAVDIIDP---RELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV 124
DL +V +++ ++ EL K +++ K + + H+ AI + + L+ G +
Sbjct: 150 DL--IKTVPYSLLVLKNDKYNELQKKGMSQGK--MKALLHNQAITHLLKKLD-GTRPEAI 204
Query: 125 YLDTVGDAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
+D + Y L+ R + S KA+ ++ V+ ASI+A+ S M+
Sbjct: 205 LIDQFAEPAVYFKHLAGRNAVKERTYFSTKAEGIHLAVAAASIIARYSFLMEMN 258
>gi|431762512|ref|ZP_19551074.1| ribonuclease HIII [Enterococcus faecium E3548]
gi|430625204|gb|ELB61854.1| ribonuclease HIII [Enterococcus faecium E3548]
Length = 305
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 9/177 (5%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREE 64
++LPK S ++G DE G G GP+ Y L L DSK LK+ + +
Sbjct: 80 SSLPKNISQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQ 139
Query: 65 LFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI----GIL 120
L + LK +++ + + ++ P + + N + + H+ AI L+ + + IL
Sbjct: 140 LADILK--ETIPYKLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPEKPEAIL 197
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
+ + + + +KY A+L + K K + + V+ ASI+++ S E +D
Sbjct: 198 IDQFTPE--ANFKKY-ARLEKNHLQEKLYFVTKGEQYHLAVAAASIISRASFLEELD 251
>gi|431586440|ref|ZP_19520955.1| ribonuclease HIII [Enterococcus faecium E1861]
gi|430593618|gb|ELB31604.1| ribonuclease HIII [Enterococcus faecium E1861]
Length = 305
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 9/177 (5%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREE 64
++LPK S ++G DE G G GP+ Y L L DSK LK+ + +
Sbjct: 80 SSLPKNISQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQ 139
Query: 65 LFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI----GIL 120
L + LK +++ + + ++ P + + N + + H+ AI L+ + + IL
Sbjct: 140 LADVLK--ETIPYKLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPEKPEAIL 197
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
+ + + + +KY A+L + K K + + V+ ASI+++ S E +D
Sbjct: 198 IDQFTPE--ANFKKY-ARLEKNHLQEKLYFVTKGEQYHLAVAAASIISRASFLEELD 251
>gi|410632345|ref|ZP_11343006.1| ribonuclease HII [Glaciecola arctica BSs20135]
gi|410148115|dbj|GAC19873.1| ribonuclease HII [Glaciecola arctica BSs20135]
Length = 203
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 29/168 (17%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
A++ + G+DE GRGP++G +V + Q +A L ADSK L E+KR+ L ++K
Sbjct: 6 ATSQLLAGVDEVGRGPLVGDVVTAAVI--LDPQHKIAGL--ADSKKLSEKKRDILAAEIK 61
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
++ W++ P+E+ +++N I H + + + V + I T V +D
Sbjct: 62 -QYALAWSIGRASPQEI-------DELN---ILHATMLAMTRAVQGLSIQPTHVMVD--- 107
Query: 131 DAEKYQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKRSNFERM 176
R P + K D L +S ASI+AK + + M
Sbjct: 108 ---------GNRCPKWDYSSEAIIKGDGLIAEISAASIIAKVTRDKEM 146
>gi|251790731|ref|YP_003005452.1| ribonuclease HII [Dickeya zeae Ech1591]
gi|247539352|gb|ACT07973.1| Ribonuclease H [Dickeya zeae Ech1591]
Length = 198
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 29/166 (17%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI G+DE GRGP++G +V + + ADSKTL E++R L+++++ +
Sbjct: 12 CIAGVDEVGRGPLVGAVVTAAVIL----DPNRPIVGLADSKTLSEKRRLALYDEIR-EKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ LN I H + + + V + + V +D
Sbjct: 67 LAWSLGRAEPEEID---------TLN-ILHATMLAMQRAVAALPVTPDFVLID------- 109
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKRSNFERMDI 178
R P++ K DS +S ASI+AK + M++
Sbjct: 110 -----GNRCPALPMPSQAVVKGDSRVAEISAASILAKVTRDREMEV 150
>gi|448607693|ref|ZP_21659646.1| ribonuclease HII [Haloferax sulfurifontis ATCC BAA-897]
gi|445737630|gb|ELZ89162.1| ribonuclease HII [Haloferax sulfurifontis ATCC BAA-897]
Length = 215
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 15/165 (9%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+G+DEAG+GPVLGPMV + P + ADSK L E+R EL L+ D V
Sbjct: 3 VGVDEAGKGPVLGPMVAAAVRADPDALPD-----GIADSKRLTPERRAELAAKLRERDDV 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR---VLNIGILLTEVYLDTVGDA 132
V ++P + + N + + +A + V + G + +
Sbjct: 58 EVGVAFVEPETIDDPETDMNLLTVRAQVEAAAAVAVDADELVCDAGDVSESRF------G 111
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
+ + +++ S++ +AD + +V ASIVAK R++
Sbjct: 112 RRVREGVAEAGVSVEVHAQHRADDEHAIVGAASIVAKVERDRRVE 156
>gi|430882569|ref|ZP_19484117.1| ribonuclease HIII [Enterococcus faecium E1575]
gi|430556814|gb|ELA96309.1| ribonuclease HIII [Enterococcus faecium E1575]
Length = 305
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 9/177 (5%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREE 64
++LPK S ++G DE G G GP+ Y L L DSK LK+ + +
Sbjct: 80 SSLPKNISQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQ 139
Query: 65 LFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI----GIL 120
L + LK +++ + + ++ P + + N + + H+ AI L+ + + IL
Sbjct: 140 LADVLK--ETIPYKLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPEKPEAIL 197
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
+ + + + +KY A+L + K K + + V+ ASI+++ S E +D
Sbjct: 198 IDQFTPE--ANFKKY-ARLEKNHLQEKLYFVTKGEQYHLAVAAASIISRASFLEELD 251
>gi|419760893|ref|ZP_14287155.1| ribonuclease HII [Thermosipho africanus H17ap60334]
gi|407513984|gb|EKF48852.1| ribonuclease HII [Thermosipho africanus H17ap60334]
Length = 220
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 27/155 (17%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
+ G+DEAGRGP+ GP+V + + + L+ DSK L KRE+LF L++
Sbjct: 2 IVAGVDEAGRGPLFGPVVAAAVIL----NEEIDGLD--DSKKLTSRKREKLF--LEIIKK 53
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+A+ I E+ N ++ EI+ D A+ + + ++ I +
Sbjct: 54 SYFAISIATADEID----KFNILHATEIAMDRALERLKKKIDFDIAFVD----------- 98
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
L+ +FP F K DSL +S ASI+AK
Sbjct: 99 -GKNLNLKFP---FKCIVKGDSLVKEISAASILAK 129
>gi|293363996|ref|ZP_06610732.1| ribonuclease HII [Mycoplasma alligatoris A21JP2]
gi|292552486|gb|EFF41260.1| ribonuclease HII [Mycoplasma alligatoris A21JP2]
Length = 199
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 33/166 (19%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+G+DE GR + GP+V C+ P +Y L DSK L +++R+ ++++ + D++
Sbjct: 15 ILGLDEVGRDSLAGPIVVACVMFPKNYHNPL----IKDSKELTKDQRDIAYKEI-IKDAI 69
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD----TVGD 131
+ L+K+ ++L+ S IG+ L+ LD + D
Sbjct: 70 TY----------KYIFLDKDFVDLHNPKKSSIIGMEK-------LIDSYELDQIDYVITD 112
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
EK K R +IKF D ++ ASIVAK E MD
Sbjct: 113 YEKVNTKFQSR--AIKF-----GDKYSITIAAASIVAKVIRDEYMD 151
>gi|182416696|ref|ZP_02948097.1| ribonuclease HII [Clostridium butyricum 5521]
gi|237668559|ref|ZP_04528543.1| ribonuclease HII (RNase HII) [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182379458|gb|EDT76951.1| ribonuclease HII [Clostridium butyricum 5521]
gi|237656907|gb|EEP54463.1| ribonuclease HII (RNase HII) [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 273
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 32/55 (58%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
I G+DE GRGP+ GP+V C+ + L DSK LKE KREEL E +K
Sbjct: 86 IAGVDEVGRGPLAGPIVACCVMLDLNVLDDELILYLNDSKKLKESKREELAEIIK 140
>gi|227552104|ref|ZP_03982153.1| ribonuclease H [Enterococcus faecium TX1330]
gi|424762401|ref|ZP_18189910.1| ribonuclease HIII [Enterococcus faecalis TX1337RF]
gi|227178770|gb|EEI59742.1| ribonuclease H [Enterococcus faecium TX1330]
gi|402424626|gb|EJV56794.1| ribonuclease HIII [Enterococcus faecium TX1337RF]
Length = 313
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 9/177 (5%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREE 64
++LPK S ++G DE G G GP+ Y L L DSK LK+ + +
Sbjct: 88 SSLPKNISQLSVLGSDEVGNGSYFGPLTVCAAYVKRDQLAELRKLGVRDSKELKDSQIIQ 147
Query: 65 LFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI----GIL 120
L + LK +++ + + ++ P + + N + + H+ AI L+ + + IL
Sbjct: 148 LADILK--ETIPYKLLVLPPEKYNEIQPKYNAVRMKVALHNQAIHLLLKKIAPEKPEAIL 205
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
+ + + + +KY A+L + K K + + V+ ASI+++ S E +D
Sbjct: 206 IDQFTPE--ANFKKY-ARLEKNHLQEKLYFVTKGEQYHLAVAAASIISRASFLEELD 259
>gi|410647264|ref|ZP_11357699.1| ribonuclease HII [Glaciecola agarilytica NO2]
gi|410133119|dbj|GAC06098.1| ribonuclease HII [Glaciecola agarilytica NO2]
Length = 197
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 29/156 (18%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP++G +V + S + +A L ADSK + E+KR LF DL + +++
Sbjct: 5 IAGVDEVGRGPLVGDVVTAAVILDPS--KPIAGL--ADSKKISEKKRLALF-DLIMQNAL 59
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+V P E+ +++N I H + + + V + I T V +D
Sbjct: 60 SVSVGRASPEEI-------DELN---ILHATMLAMTRAVQGLAIQPTFVRVD-------- 101
Query: 136 QAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAK 169
R P + K DSLY +S ASI+AK
Sbjct: 102 ----GNRCPKWNYASEAVVKGDSLYAEISAASIIAK 133
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,585,496,568
Number of Sequences: 23463169
Number of extensions: 96145157
Number of successful extensions: 263401
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 3550
Number of HSP's that attempted gapping in prelim test: 258731
Number of HSP's gapped (non-prelim): 4752
length of query: 178
length of database: 8,064,228,071
effective HSP length: 133
effective length of query: 45
effective length of database: 9,238,593,890
effective search space: 415736725050
effective search space used: 415736725050
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 71 (32.0 bits)