BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030402
(178 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SEZ6|RNH2A_ARATH Ribonuclease H2 subunit A OS=Arabidopsis thaliana GN=At2g25100 PE=2
SV=2
Length = 296
Score = 286 bits (732), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 133/169 (78%), Positives = 154/169 (91%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
M SE P+WAS PC+MGIDEAGRGPVLGPMVYGC+YCP SYQ +LA+L+FADSKTLKEE
Sbjct: 1 MESECLTPEWASQPCLMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEE 60
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
KREEL+E LK++ S+GWAVD+IDPRELSAKML KNK NLNEISH+SA+GLI RVL++G+L
Sbjct: 61 KREELYESLKLDKSLGWAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVL 120
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
LTE YLDTVGD +KY+ KLS+RFPSIKFVVSKKADSL+P+VSGASIVAK
Sbjct: 121 LTEAYLDTVGDPDKYRIKLSERFPSIKFVVSKKADSLFPIVSGASIVAK 169
>sp|Q5U209|RNH2A_RAT Ribonuclease H2 subunit A OS=Rattus norvegicus GN=Rnaseh2a PE=2
SV=1
Length = 301
Score = 182 bits (461), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/157 (55%), Positives = 111/157 (70%), Gaps = 1/157 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+DI+ P +S ML + K NLN +SHD+A GLI ++ + +T+V++DTVG
Sbjct: 88 DFVGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVTQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQA+L QRFP I+ V KADSL+PVVS ASI+AK
Sbjct: 148 ETYQARLQQRFPGIEVTVKAKADSLFPVVSAASIIAK 184
>sp|O75792|RNH2A_HUMAN Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASEH2A PE=1 SV=2
Length = 299
Score = 181 bits (459), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/156 (55%), Positives = 108/156 (69%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVY YCP L L ADSKTL E +RE LF ++ D
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTD 87
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E
Sbjct: 88 FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPE 147
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
YQA+L Q FP I+ V KAD+LYPVVS ASI AK
Sbjct: 148 TYQARLQQSFPGIEVTVKAKADALYPVVSAASICAK 183
>sp|Q9VPP5|RNH2A_DROME Ribonuclease H2 subunit A OS=Drosophila melanogaster GN=CG13690
PE=2 SV=1
Length = 347
Score = 181 bits (458), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 88/160 (55%), Positives = 112/160 (70%), Gaps = 4/160 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L E KR+ +F D+ +
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKE 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
G EKYQ KL +RFPS K V+KKADS YP+VS ASI AK
Sbjct: 190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAK 229
>sp|Q9CWY8|RNH2A_MOUSE Ribonuclease H2 subunit A OS=Mus musculus GN=Rnaseh2a PE=1 SV=2
Length = 301
Score = 177 bits (449), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 109/157 (69%), Gaps = 1/157 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ + +T+V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQA+L Q FP I+ V KADSL+PVVS ASI AK
Sbjct: 148 ETYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAK 184
>sp|Q2TBT5|RNH2A_BOVIN Ribonuclease H2 subunit A OS=Bos taurus GN=RNASEH2A PE=1 SV=1
Length = 299
Score = 176 bits (446), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 84/158 (53%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
PC++G+DEAGRGPVLGPMVY YCP S + L L ADSKTL E +R+ LF ++ +
Sbjct: 27 EPCVLGVDEAGRGPVLGPMVYAICYCPLSRLEDLEALKVADSKTLSESERDRLFAKMEED 86
Query: 73 -DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
D VGWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG
Sbjct: 87 GDFVGWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLVQFALDQGVNVAQVFVDTVGL 146
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E YQ +L QRFP I+ V KAD+LYPVVS ASI AK
Sbjct: 147 PETYQERLQQRFPGIEVTVKAKADALYPVVSAASICAK 184
>sp|Q54D13|RNH2A_DICDI Ribonuclease H2 subunit A OS=Dictyostelium discoideum GN=rnaseh2A
PE=3 SV=1
Length = 289
Score = 173 bits (438), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 93/177 (52%), Positives = 119/177 (67%), Gaps = 10/177 (5%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-K 70
S P +MGIDEAGRGPV+GPMVYGC Y P S TL ++ F DSK L E++R++LF+ + +
Sbjct: 18 SEPFVMGIDEAGRGPVMGPMVYGCCYAPISKSTTLKSMKFNDSKKLTEQQRDQLFDKMGE 77
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
N + + D+I LS KML K I+LN ISH+SAIGLI VL G+ + E+YLDTVG
Sbjct: 78 SNKILAYETDVITAEILSEKMLYKKPISLNVISHESAIGLIRSVLKKGVNVQELYLDTVG 137
Query: 131 DAEKYQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAK--------RSNFERMDI 178
+KYQ L + FP I K +VSKKADSLYP+VS ASI AK NF+ ++I
Sbjct: 138 PPDKYQLMLKKLFPEIGKIIVSKKADSLYPIVSAASIAAKVVRDFEITNKNFDYLNI 194
>sp|Q10236|RNH2A_SCHPO Ribonuclease H2 subunit A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rnh201 PE=3 SV=1
Length = 326
Score = 155 bits (391), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/164 (51%), Positives = 105/164 (64%), Gaps = 8/164 (4%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-- 69
S P +G+DEAGRGPVLGPMVY YCP + L FADSKTL KREEL + +
Sbjct: 61 SQPYRLGVDEAGRGPVLGPMVYAVAYCPVDFD--LTNYGFADSKTLASLKREELLKLICN 118
Query: 70 ---KVNDSVGWAVDIIDPRELSAKMLN-KNKINLNEISHDSAIGLITRVLNIGILLTEVY 125
++ +VGW+ I REL+A ML +NK NLN +HD+ I LI +V GI +TE+Y
Sbjct: 119 KSNELGKNVGWSTMSISARELAAGMLRYRNKYNLNLQAHDTTIDLIKKVYESGINVTEIY 178
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+DTVG YQ KL FP K V+KKADSL+P+VS ASI AK
Sbjct: 179 VDTVGPPISYQEKLQAHFPQAKVTVTKKADSLFPIVSLASICAK 222
>sp|Q9U6P6|RNH2A_CAEEL Ribonuclease H2 subunit A OS=Caenorhabditis elegans GN=rnh-2 PE=2
SV=1
Length = 297
Score = 149 bits (377), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 102/167 (61%), Gaps = 4/167 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF----EDL 69
PC++GIDEAGRGPVLGPMVY P L L DSK L E KREE+F ED
Sbjct: 21 PCVLGIDEAGRGPVLGPMVYAAAISPLDQNVELKNLGVDDSKALNEAKREEIFNKMNEDE 80
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ + +A+ + P +S ML + K +LNE+SH++AI LI L + + E+ +DTV
Sbjct: 81 DIQQIIAYALRCLSPELISCSMLKRQKYSLNEVSHEAAITLIRDALACNVNVVEIKVDTV 140
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERM 176
G YQAKL + FP I V++KADSL+P+VS ASI AK + R+
Sbjct: 141 GPKATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDSRL 187
>sp|P53942|RNH2A_YEAST Ribonuclease H2 subunit A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RNH201 PE=1 SV=1
Length = 307
Score = 127 bits (319), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 93/163 (57%), Gaps = 9/163 (5%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQ--TLATLNFADSKTLKEEKR 62
+AL + +P IMGIDEAGRGPVLGPMVY Y YQ + F DSK L + R
Sbjct: 24 SALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83
Query: 63 EELFEDLKVND----SVGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVL 115
LF + ++ +G+A I P ++S +K NLNE +HD + LI V+
Sbjct: 84 RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVI 143
Query: 116 NIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLY 158
+ L+ VY+DTVG YQ KL QRFP +KF V+KKADSLY
Sbjct: 144 KQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLY 186
>sp|Q9P5X8|RNH2A_NEUCR Ribonuclease H2 subunit A OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rnh-201 PE=3 SV=1
Length = 317
Score = 127 bits (318), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 103/168 (61%), Gaps = 10/168 (5%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFEDL 69
+ PC +G+DEAGRGPVLGPMVY Y P + L +F DSK L R L ++L
Sbjct: 41 NTPCCLGVDEAGRGPVLGPMVYSAFYLPLTLSDPLLKQKHSFDDSKVLTPAVRLSLMKEL 100
Query: 70 -----KVNDSVGWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNIGILL 121
+++D+ G+A + P +S+ ML +K NLN+ + D+ I LI + G+ +
Sbjct: 101 CTKDTELHDNCGYATSSLSPLSISSGMLKASKAQIYNLNQQAMDATIALIKGIYERGVNV 160
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
T++++DT+G YQ KL + FP+ K V+KKADSLYPVVS AS+VAK
Sbjct: 161 TDIFIDTIGQPAAYQKKLERVFPTAKITVAKKADSLYPVVSAASVVAK 208
>sp|P57673|RNH2_THEAC Ribonuclease HII OS=Thermoplasma acidophilum (strain ATCC 25905 /
DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=rnhB
PE=3 SV=1
Length = 212
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 82/152 (53%), Gaps = 14/152 (9%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGPV+GPMV + C S+ L + DSK L ++R ELFE + SV +
Sbjct: 9 GIDEAGRGPVIGPMVISLVCCDLSF---LKEIRVKDSKALTRKRRSELFEKIMGRCSVRY 65
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
I+ P++L+ M + +LN+I D + L+ ++ VY+D E+
Sbjct: 66 R--ILHPKDLNRMMAAE---SLNKIEEDEIVDLLRYADDL------VYIDCYDVIEERAQ 114
Query: 138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
++ Q + V KAD+++P VS ASIV+K
Sbjct: 115 EIIQMRSGRQVVCKHKADAIFPAVSAASIVSK 146
>sp|A6UUM1|RNH2_META3 Ribonuclease HII OS=Methanococcus aeolicus (strain Nankai-3 / ATCC
BAA-1280) GN=rnhB PE=3 SV=1
Length = 277
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
+N I+G+DEAGRGPVLGPMV + + L+ DSK + +REELFE +
Sbjct: 18 NNKLIIGLDEAGRGPVLGPMVIALVKIKGQDLKNFEKLDIKDSKKHSKNRREELFEMIIN 77
Query: 72 NDSVGWAVDIIDPRELSAKMLNK--NKINLNEISHDSAIGLITRVL---------NIGIL 120
N V + + L AK ++K N INLN+I + LI VL N I
Sbjct: 78 NYDVRYEI-------LEAKTIDKLMNTINLNKIELMAFTKLINSVLKEEYPNYKENSKIQ 130
Query: 121 LT----EVYLDTVGDAEK-YQAKLSQRF-----PSIKFVVSKKADSLYPVVSGASIVAK 169
E+Y+D EK + ++ + +IK + KAD Y +VS ASI+AK
Sbjct: 131 TATPQIEIYIDACSSNEKAFANQIKSKLIVNDENNIKIIAEHKADENYKIVSAASIIAK 189
>sp|Q97CG6|RNH2_THEVO Ribonuclease HII OS=Thermoplasma volcanium (strain ATCC 51530 / DSM
4299 / JCM 9571 / NBRC 15438 / GSS1) GN=rnhB PE=3 SV=2
Length = 212
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 82/152 (53%), Gaps = 14/152 (9%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGPV+GPMV + C ++ L + DSK L ++RE LF+ K+ + +
Sbjct: 8 GIDEAGRGPVIGPMVISIV---CCKEEYLREIGVKDSKMLSRKRREYLFD--KITKNCAY 62
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
+ ++ P L+ M ++ +LN+I + + L+++ I VY+D E+
Sbjct: 63 SYVVVSPETLNKDMASE---SLNKIEENYILELLSKAEGI------VYIDCFDVIEERAE 113
Query: 138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
K + + V KADS+YP VS ASIV+K
Sbjct: 114 KYIREKSGKEVVCKHKADSIYPAVSAASIVSK 145
>sp|Q6LXH7|RNH2_METMP Ribonuclease HII OS=Methanococcus maripaludis (strain S2 / LL)
GN=rnhB PE=3 SV=1
Length = 242
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+G+DEAGRGPVLGPMV + L L DSK L ++KREEL+ + +N+
Sbjct: 23 IVGLDEAGRGPVLGPMVIASVKIDEKNLYKLNDLELKDSKQLSKKKREELY--IIINEMC 80
Query: 76 GWAVDIIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
+IDP + +M +N NKI L+ S S I NI I Y+D +E
Sbjct: 81 DVEKIVIDPETIDKQMEIINLNKIELSAFSKLSN-HFIRENDNISI-----YIDACSSSE 134
Query: 134 -----KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+++AKL + +++ + KAD Y +VS ASI+AK
Sbjct: 135 QSFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAK 173
>sp|A6VGW0|RNH2_METM7 Ribonuclease HII OS=Methanococcus maripaludis (strain C7 / ATCC
BAA-1331) GN=rnhB PE=3 SV=1
Length = 239
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 85/156 (54%), Gaps = 7/156 (4%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+G+DEAGRGPV+GPMV + + L L DSK L ++KREEL+ +K+++
Sbjct: 20 IVGLDEAGRGPVIGPMVIASVKINENDLPKLHDLGLKDSKQLTKKKREELY--IKISEIC 77
Query: 76 GWAVDIIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
+IDP ++ +M +N NKI L S A I NI I + + +
Sbjct: 78 DVKKIVIDPEKIDEQMEIINLNKIELGAFSK-LANHFIKENENISIYIDACSSNEQSFSN 136
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+++AKL + +++ + KAD Y +VS ASI+AK
Sbjct: 137 QFKAKLINK--NVEIIAEHKADENYKIVSAASIIAK 170
>sp|Q57599|RNH2_METJA Ribonuclease HII OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rnhB PE=1 SV=1
Length = 230
Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 94/177 (53%), Gaps = 23/177 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRGPVLGPMV ++ L L DSK L + KR L K+ +++
Sbjct: 3 IIGIDEAGRGPVLGPMVVCAFAIEKEREEELKKLGVKDSKELTKNKRAYL---KKLLENL 59
Query: 76 GWAVDIIDPRELSAKMLNK--NKINLNEISHDS----AIGLITRVLNIGILLTEVYLDTV 129
G+ ++ R L A+ +N+ N INLN+I ++ A LI + LNI E+Y+D
Sbjct: 60 GY----VEKRILEAEEINQLMNSINLNDIEINAFSKVAKNLIEK-LNIRDDEIEIYIDAC 114
Query: 130 GD---------AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMD 177
+K + + +R +IK + KAD+ YPVVS ASI+AK E +D
Sbjct: 115 STNTKKFEDSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVSAASIIAKAERDEIID 171
>sp|A2BL34|RNH2_HYPBU Ribonuclease HII OS=Hyperthermus butylicus (strain DSM 5456 / JCM
9403) GN=rnhB PE=3 SV=1
Length = 240
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 82/155 (52%), Gaps = 13/155 (8%)
Query: 17 MGIDEAGRGPVLGPM-VYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF-EDLKVNDS 74
+GIDEAGRGPV+GPM V G C + L L DSK L R +L+ E L+V +
Sbjct: 10 IGIDEAGRGPVIGPMVVVGVAVCSNDIDK-LVALGVRDSKQLTPVVRAKLYGEILRV--A 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ + + P L A +NLN++ ++ + +R+ + VY+D VG EK
Sbjct: 67 LHSVIVKLPPALLDA-------VNLNQLEVETFEYIASRIAGVHDSPEAVYVDAVGSPEK 119
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
A+LS R ++ + AD YP+VS ASIVAK
Sbjct: 120 LAARLSGRL-GVRVIAEPGADKTYPIVSAASIVAK 153
>sp|A9A9T9|RNH2_METM6 Ribonuclease HII OS=Methanococcus maripaludis (strain C6 / ATCC
BAA-1332) GN=rnhB PE=3 SV=1
Length = 239
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 7/160 (4%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
S I+G+DEAGRGPV+GPMV + L L DSK L ++KREEL+ +K+
Sbjct: 16 SGKIIVGLDEAGRGPVIGPMVIASVKINEKDLYKLQDLGLKDSKQLSKKKREELY--VKI 73
Query: 72 NDSVGWAVDIIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
++ +I P ++ +M N NKI L+ S A I NI I + +
Sbjct: 74 SEICNVKKIVIAPEKIDEQMEITNLNKIELSAFSK-LANHFIKENENISIYIDACSSNEQ 132
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+ +++AKL + +++ + KAD Y +VS ASI+AK
Sbjct: 133 SFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAK 170
>sp|A4FWE5|RNH2_METM5 Ribonuclease HII OS=Methanococcus maripaludis (strain C5 / ATCC
BAA-1333) GN=rnhB PE=3 SV=1
Length = 239
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+G+DEAGRGPV+GPMV + L L DSK L ++KREEL+ K+++
Sbjct: 20 IVGLDEAGRGPVIGPMVIASVKINEKDLPRLDDLGLRDSKQLSKKKREELY--TKISEIC 77
Query: 76 GWAVDIIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
+I+P ++ +M +N NKI L S A I NI I + + +
Sbjct: 78 DVKKVVINPEKIDEQMEIINLNKIELGAFSK-LANHFIKENENISIYIDACSSNEQSFSN 136
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+++AKL + +++ + KAD Y +VS ASI+AK
Sbjct: 137 QFKAKLINK--NVEIIAEHKADENYKIVSAASIIAK 170
>sp|Q0W5R8|RNH2_UNCMA Ribonuclease HII OS=Uncultured methanogenic archaeon RC-I GN=rnhB
PE=3 SV=1
Length = 224
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 11/156 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
IMGIDEAGRGPV+GP+V + + + DSK L +KREE LK +
Sbjct: 9 IMGIDEAGRGPVIGPLVVCGIIVEEKDLPAIEAMGLKDSKKLSAKKREEFAAALK--NKY 66
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
+ + ++ P+E+ A+ +++ NLN + + GLI T YLD +AE+
Sbjct: 67 KYELSVLPPQEIDARFESED--NLNRLEVNCFAGLIRSAKP-----TIAYLDACDVNAER 119
Query: 135 YQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAK 169
+ + + ++ V + +ADS YP+VS ASI+AK
Sbjct: 120 FGINIKKCLDFELEIVSAHEADSKYPIVSAASIIAK 155
>sp|A1RYM0|RNH2_THEPD Ribonuclease HII OS=Thermofilum pendens (strain Hrk 5) GN=rnhB PE=3
SV=1
Length = 213
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 14/166 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGP+LGPMV + CP L + DSK L +R L + SV
Sbjct: 4 VAGIDEAGRGPMLGPMVVAIVVCPEEKVPLLRNMGVRDSKALSPRRRLLLSRAIP---SV 60
Query: 76 GWAVD--IIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
G +V +++P+E+ + + NLN + LI VL+ G L VY+D+ +
Sbjct: 61 GCSVKVRVVEPQEIDCAVRGECYENLNHLEAAVFAQLINEVLSEGELEV-VYMDS---PD 116
Query: 134 KYQAKLSQRFPS-----IKFVVSKKADSLYPVVSGASIVAKRSNFE 174
++ +R + ++ V AD Y +V ASIVAK + E
Sbjct: 117 PVPSRFEERVRALLKGQVRIVAENGADEKYTIVGAASIVAKETRDE 162
>sp|O74035|RNH2_PYRKO Ribonuclease HII OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 /
JCM 12380 / KOD1) GN=rnhB PE=1 SV=1
Length = 228
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 13/157 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGPV+GPMV + + L L DSK L ++RE+LF N+ +
Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLF-----NEIL 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVG-DAE 133
G D + EL ++ + LNE ++ + LN + + +Y D D E
Sbjct: 58 GVLDDYV-ILELPPDVIGSREGTLNEFEVEN----FAKALNSLKVKPDVIYADAADVDEE 112
Query: 134 KYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAK 169
++ +L +R VV+K KAD ++PVVS ASI+AK
Sbjct: 113 RFARELGERLNFEAEVVAKHKADDIFPVVSAASILAK 149
>sp|Q8PTA3|RNH2_METMA Ribonuclease HII OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM
3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=rnhB PE=3
SV=1
Length = 220
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 83/163 (50%), Gaps = 18/163 (11%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAG+GPV+GPM G + S L L ADSK L +KRE+L +K +
Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVKIDESKAHILKVLGVADSKKLTPKKREQLASQIK-KHAD 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
G+ + + P ++ + +++NEI + +VL + VY D AE+
Sbjct: 62 GYFIFEVSPSQIDE---LRKIMSMNEI----MVVCFAKVLE-QLKPDIVYADAADVKAER 113
Query: 135 YQAKLSQRFP--------SIKFVVSKKADSLYPVVSGASIVAK 169
+ L +++ IK V +AD++YPVVS ASI+AK
Sbjct: 114 FAENLLRQYAKTSPDHAKKIKVVSMHQADAIYPVVSAASIIAK 156
>sp|Q74MH3|RNH2_NANEQ Ribonuclease HII OS=Nanoarchaeum equitans (strain Kin4-M) GN=rnhB
PE=3 SV=1
Length = 200
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 78/152 (51%), Gaps = 15/152 (9%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGP++GPMV + Y L L DSK L +E+REELF ++ N V +
Sbjct: 5 GVDEAGRGPIIGPMVIALVIGDSGY---LKELGVKDSKLLTKEQREELFNEIVKNSLVKY 61
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
+I+ P + ++ NLNE+ LI + + ++ + +D+ E Y+
Sbjct: 62 --EIVSPSLI-------DRYNLNELEAKVTANLINSIED---EISHIVIDSPERPENYKL 109
Query: 138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
++ + +++K P+V+ ASIVAK
Sbjct: 110 RILKYLKKRVKIITKNKGEEDPLVAAASIVAK 141
>sp|Q8TPF4|RNH2_METAC Ribonuclease HII OS=Methanosarcina acetivorans (strain ATCC 35395 /
DSM 2834 / JCM 12185 / C2A) GN=rnhB PE=3 SV=1
Length = 223
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 83/163 (50%), Gaps = 18/163 (11%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAG+GPV+GPM G + S L L ADSK L +KRE+L +K +
Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVKIEESRAHILKVLGVADSKKLTPKKREQLASQIK-KHAD 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
G+ + I P ++ + +++NEI + +VL + VY D AE+
Sbjct: 62 GFFILEITPAQIDE---LRKIMSMNEI----MVICFAKVLE-QLKPDIVYADAADVKAER 113
Query: 135 YQAKLSQRFP--------SIKFVVSKKADSLYPVVSGASIVAK 169
+ L +++ I+ + +AD++YPVVS ASI+AK
Sbjct: 114 FAENLRRQYAKTNPAHAKKIEIISMHQADAIYPVVSAASIIAK 156
>sp|Q9V1A9|RNH2_PYRAB Ribonuclease HII OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rnhB
PE=3 SV=1
Length = 224
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 86/158 (54%), Gaps = 15/158 (9%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVNDS 74
+ G DEAGRGPV+GP+V ++L L DSK L +RE+LF+++ KV D
Sbjct: 3 VAGADEAGRGPVIGPLVIVAAVVEEDKIRSLTKLGVKDSKQLTPAQREKLFDEIVKVLDD 62
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV-YLDTVG-DA 132
++V I+ P+++ + K ++NE+ ++ + + LN + EV Y+D+ A
Sbjct: 63 --YSVVIVSPQDIDGR-----KGSMNELEVENFV----KALNSLKVKPEVIYIDSADVKA 111
Query: 133 EKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAK 169
E++ + R K V KAD+ Y +VS ASI+AK
Sbjct: 112 ERFAENIRSRLAYEAKVVAEHKADAKYEIVSAASILAK 149
>sp|A6UQ18|RNH2_METVS Ribonuclease HII OS=Methanococcus vannielii (strain SB / ATCC 35089
/ DSM 1224) GN=rnhB PE=3 SV=1
Length = 244
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+G+DEAGRGPVLGPMV + + +L+ DSK L +++REE + +N+
Sbjct: 25 ILGLDEAGRGPVLGPMVISVVKVTEKDLDKINSLDLKDSKQLTKKRREEYYNI--INECF 82
Query: 76 GWAVDIIDPRELSA--KMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
++ P ++ K N NKI L+ S S + N+ I +
Sbjct: 83 EVQKIVLAPEKIDEYMKTSNLNKIELSAFSKLSN-HFLKEYENVKIFIDACSSSEQSFLN 141
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+++AKL + ++ + KAD Y +VS ASI+AK
Sbjct: 142 QFKAKLINK--KVEIIAEHKADEKYKIVSAASIIAK 175
>sp|Q2FP80|RNH2_METHJ Ribonuclease HII OS=Methanospirillum hungatei (strain JF-1 / DSM
864) GN=rnhB PE=3 SV=1
Length = 212
Score = 67.0 bits (162), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 75/160 (46%), Gaps = 22/160 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAG+G VLGPMV + C+ L L ADSK L + RE++ D+K
Sbjct: 2 ICGVDEAGKGSVLGPMVVAAV--GCTDMDDLIALGVADSKKLSSKSREKISADIKAQFPF 59
Query: 76 GWAVDII-DPRELSAKMLNKNKINLNEI---SHDSAIGLITRVLNIGILLTEVYLDTVGD 131
+ D EL + + +NEI SH A+ I + T Y+D
Sbjct: 60 SIVIRTAHDIDEL------RRTMTMNEIVARSHAEAL--------IPLNCTCAYVDACDV 105
Query: 132 AEKYQAKLSQRF--PSIKFVVSKKADSLYPVVSGASIVAK 169
+E+ + F P V KADSL+P VS ASI+AK
Sbjct: 106 SEERYEETVSSFSPPDCTIVARHKADSLFPPVSAASIIAK 145
>sp|Q2NEI6|RNH2_METST Ribonuclease HII OS=Methanosphaera stadtmanae (strain DSM 3091)
GN=rnhB PE=3 SV=1
Length = 212
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 10/164 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRG V+GP+V G + + L + DSK L +KR + +K +
Sbjct: 9 ILGIDEAGRGSVIGPLVIGGVLMKKKKIRFLNRIGVKDSKQLNMKKRTIISRKIK---KI 65
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE-K 134
II P + N N INLNEI + + I +++ Y+D + E +
Sbjct: 66 AQFKTIIIPAHTIDEKRN-NDINLNEIETE-GMEEIIKIMK----PNACYIDCIDVRENR 119
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMDI 178
+ K+ + P++ V KAD Y +VS ASI+AK ++++I
Sbjct: 120 FHDKIQKINPNMTVVTEHKADETYKIVSAASIIAKVERDKQLEI 163
>sp|Q468N6|RNH2_METBF Ribonuclease HII OS=Methanosarcina barkeri (strain Fusaro / DSM
804) GN=rnhB PE=3 SV=1
Length = 224
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 18/163 (11%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAG+GPV+GPM G + S L L ADSK L +KRE+L +K +
Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVKIEESRAHILKVLGVADSKKLTPKKREQLAAQIK-KHAD 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
G+ V + P ++ + + +NEI + ++VL + +Y D +AE+
Sbjct: 62 GFFVLEVSPSQIDEL---RKIMTMNEI----MVVCFSKVLE-QLKPDLLYADAADVNAER 113
Query: 135 YQAKLSQRF--------PSIKFVVSKKADSLYPVVSGASIVAK 169
+ + +++ I+ + +AD+ YPVVS ASI+AK
Sbjct: 114 FATNIRKQYSKTNPDHAKEIEIISMHQADATYPVVSAASIIAK 156
>sp|C6A1I4|RNH2_THESM Ribonuclease HII OS=Thermococcus sibiricus (strain MM 739 / DSM
12597) GN=rnhB PE=3 SV=1
Length = 224
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 83/160 (51%), Gaps = 23/160 (14%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGPV+GP+V + S + L DSK L +KREELFE +
Sbjct: 5 GIDEAGRGPVVGPLVIAAVVIDESKIEKFEALGVKDSKKLSPKKREELFEKI-------- 56
Query: 78 AVDIIDPR---ELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVG-DA 132
++++D ELS + ++K + +N D + +VLN + I VY+D +
Sbjct: 57 -IELVDDYFILELSPEDIDKREGTMN----DFEVENFAKVLNSLKIKPDLVYIDAADVNE 111
Query: 133 EKYQAKLSQR---FPSIKFVVSKKADSLYPVVSGASIVAK 169
E++ + ++ +P I + KADS Y V+ ASI+AK
Sbjct: 112 ERFGIVVREKLSFYPKI--IAEHKADSKYIPVAAASILAK 149
>sp|Q8U036|RNH2_PYRFU Ribonuclease HII OS=Pyrococcus furiosus (strain ATCC 43587 / DSM
3638 / JCM 8422 / Vc1) GN=rnhB PE=3 SV=1
Length = 224
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 11/156 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP +GP+V + + L + DSK L +R+ LF + + +
Sbjct: 3 IGGIDEAGRGPAIGPLVVATVVVDEKNIEKLRNIGVKDSKQLTPHERKNLFSQI-TSIAD 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
+ + I+ P E+ + N++ + + + L L I L +Y D DA +
Sbjct: 62 DYKIVIVSPEEIDNRSGTMNELEVEKFA------LALNSLQIKPAL--IYADAADVDANR 113
Query: 135 YQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAK 169
+ + + +R K + KAD+ YPVVS ASI+AK
Sbjct: 114 FASLIERRLNYKAKIIAEHKADAKYPVVSAASILAK 149
>sp|Q9YET5|RNH2_AERPE Ribonuclease HII OS=Aeropyrum pernix (strain ATCC 700893 / DSM
11879 / JCM 9820 / NBRC 100138 / K1) GN=rnhB PE=3 SV=2
Length = 225
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 86/167 (51%), Gaps = 13/167 (7%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++G+DEAGRG ++G +V + L +L DSK L R EL+ ++
Sbjct: 3 IVVGVDEAGRGSLVGDLVVAGFAVEEARLGELQSLGVRDSKQLSPAARVELYREI---SG 59
Query: 75 VGW-AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDA 132
VG+ V+ I P E+ + N+N + + +++R+++ +G+ + V +D GD
Sbjct: 60 VGFFTVEAIRPWEIDGE-------NINILVTKAVEEIVSRIVSYLGVHPSLVVVDKYGDV 112
Query: 133 EKYQAKLSQ-RFPSIKFVVSKKADSLYPVVSGASIVAKRSNFERMDI 178
+ + L++ +V +KADS YPVVS ASIVAK R+ +
Sbjct: 113 QGLRLALTRLGIEPRSILVEEKADSRYPVVSAASIVAKVVRDARLQV 159
>sp|O29634|RNH2_ARCFU Ribonuclease HII OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=rnhB PE=1
SV=1
Length = 205
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 14/153 (9%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAG+G V+GP+V + CS + L L DSK L + +REEL E+++
Sbjct: 4 GIDEAGKGCVIGPLVVAGV--ACSDEDRLRKLGVKDSKKLSQGRREELAEEIR--KICRT 59
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV-YLDTVGDAEKYQ 136
V + P L +M K +NEI + +I R L E+ Y+D+ +
Sbjct: 60 EVLKVSPENLDERMAAKT---INEILKECYAEIILR------LKPEIAYVDSPDVIPERL 110
Query: 137 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
++ + ++ V KAD YP+V+ ASI+AK
Sbjct: 111 SRELEEITGLRVVAEHKADEKYPLVAAASIIAK 143
>sp|Q97W56|RNH2_SULSO Ribonuclease HII OS=Sulfolobus solfataricus (strain ATCC 35092 /
DSM 1617 / JCM 11322 / P2) GN=rnhB PE=3 SV=1
Length = 212
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 14/159 (8%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRG ++GPM+ + + + L + DSK L E+RE+LF D+ N
Sbjct: 3 VGIDEAGRGALIGPMIVAGVVISDTKLKFLKGIGVKDSKQLTRERREKLF-DIVANTVEA 61
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
+ V + P E+ + NLN++++D+ +I + + + V D VGD EK
Sbjct: 62 FTVVKVFPYEI-------DNYNLNDLTYDAVSKIILSLSSFNPEIVTV--DKVGD-EKPV 111
Query: 137 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK--RSNF 173
+L + K V KAD L+ S ASI+AK R N+
Sbjct: 112 IELINKL-GYKSNVVHKADVLFVEASAASIIAKVIRDNY 149
>sp|Q12YN9|RNH2_METBU Ribonuclease HII OS=Methanococcoides burtonii (strain DSM 6242)
GN=rnhB PE=3 SV=1
Length = 213
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 83/169 (49%), Gaps = 31/169 (18%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAG+GPV+GPM G + L L ADSK L ++R L +K +
Sbjct: 3 IIGIDEAGKGPVIGPMCIGGVRIDEDKSNALKNLGVADSKKLSPKRRVHLAAQIK-KYAD 61
Query: 76 GWAVDIIDPRELSA--KMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV-GDA 132
GW V + P ++ K+++ N I VL G ++ E+ D + DA
Sbjct: 62 GWFVYEVSPNQIDELRKLMSMNDI---------------MVLAFGSVIEELPSDKIYADA 106
Query: 133 -----EKYQAKL----SQRFPSIK--FVVSKK-ADSLYPVVSGASIVAK 169
E++ +L ++ P + V+SK AD L+PVVS ASI+AK
Sbjct: 107 ADVKEERFGKRLFDNYMEKHPDVSPPEVISKHGADDLFPVVSAASILAK 155
>sp|Q4JA60|RNH2_SULAC Ribonuclease HII OS=Sulfolobus acidocaldarius (strain ATCC 33909 /
DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=rnhB
PE=3 SV=1
Length = 212
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 20/159 (12%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++GIDEAGRG ++GPMV + ++ + L+ + DSK L +KRE LF V
Sbjct: 2 ILVGIDEAGRGSLIGPMVVAGVAIDSNFLKFLSEIGVKDSKKLTRKKREYLF---GVILE 58
Query: 75 VGWAVDIID--PRELSAKMLNKNKINLNEISHDSAIGLI--TRVLNIGILLTEVYLDTVG 130
+A+ ++ P E+ ++ NLNEI++ + I +I V N I V +D VG
Sbjct: 59 YSYAISLVKAYPEEIDSE-------NLNEITYRAMIQIIHSMSVYNPSI----VTVDKVG 107
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+A + ++ S + V AD Y VS ASI+AK
Sbjct: 108 NASAVEREIININSSPR--VENNADVKYVEVSAASIIAK 144
>sp|Q8TYV5|RNH2_METKA Ribonuclease HII OS=Methanopyrus kandleri (strain AV19 / DSM 6324 /
JCM 9639 / NBRC 100938) GN=rnhB PE=3 SV=1
Length = 210
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 17/155 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+MGIDEAGRGPV GPMV + P ++ L L DSK L R L L ++ +
Sbjct: 4 VMGIDEAGRGPVFGPMVVAGVLAP---KRELG-LGARDSKELTRSARRRLIRALMSDERL 59
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ I+ P E+ + + K + ++ L+ R + EV LD G+
Sbjct: 60 RVDLRIVWPWEIDEEGVAKAEF-------EAIRELVRRAMP-----DEVILDKPGNYSPE 107
Query: 136 QAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAK 169
+ + P I + ++AD+ Y VVS ASIVAK
Sbjct: 108 RLRRELDLPEGINLIAEERADAKYEVVSAASIVAK 142
>sp|A5ULV6|RNH2_METS3 Ribonuclease HII OS=Methanobrevibacter smithii (strain PS / ATCC
35061 / DSM 861) GN=rnhB PE=3 SV=1
Length = 207
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 77/156 (49%), Gaps = 11/156 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++GIDEAGRG VLGP+V + P L + DSK L +R L LK
Sbjct: 3 VLGIDEAGRGSVLGPLVIAGVIVPEKMDIVLERMGVKDSKRLTPNRRTILSRKLK--KMF 60
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
+ + +I +++ + + INLNEI IG+ + N+ + +D V AE+
Sbjct: 61 EYDLVVISAQDIDN--MRADGINLNEIER---IGMEKILSNLN--PEKAIVDAVDIKAER 113
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKR 170
+Q KL+ + V KAD Y VS ASI+AK+
Sbjct: 114 FQNKLAND-TGVNVVAEHKADDNYIEVSAASIIAKQ 148
>sp|O59351|RNH2_PYRHO Ribonuclease HII OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM
12428 / JCM 9974 / NBRC 100139 / OT-3) GN=rnhB PE=1 SV=1
Length = 220
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 80/158 (50%), Gaps = 15/158 (9%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGPV+GP+V G + L + DSK L +RE+LF L ++
Sbjct: 3 VAGVDEAGRGPVIGPLVIGVAVIDEKNIERLRDIGVKDSKQLTPGQREKLFSKL-IDILD 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ V ++ P+E+ + + N++ A + + ++ I ++Y+D+ K
Sbjct: 62 DYYVLLVTPKEIDERHHSMNELE--------AEKFVVALNSLRIKPQKIYVDSADVDPKR 113
Query: 136 QAKLSQRFPSIKF----VVSKKADSLYPVVSGASIVAK 169
A L + +K+ + KAD+ Y +VS ASI+AK
Sbjct: 114 FASLIK--AGLKYEATVIAEHKADAKYEIVSAASIIAK 149
>sp|Q974Z3|RNH2_SULTO Ribonuclease HII OS=Sulfolobus tokodaii (strain DSM 16993 / JCM
10545 / NBRC 100140 / 7) GN=rnhB PE=3 SV=1
Length = 208
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 12/155 (7%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++GIDEAGRG ++GPM+ + + L + DSK L +RE+LF D+ + S
Sbjct: 2 IVVGIDEAGRGSLIGPMIVAGVAIKNDRLKFLKNIGVKDSKQLTRNRREKLF-DIICSYS 60
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
G+ + + P E+ ++ NLNE+++ + I +I ++ + + +D VG+ +
Sbjct: 61 EGFTIVKVSPEEIDSE-------NLNELTYKAMIKIIYSLVEFKPI--RISIDKVGNTKV 111
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+ ++ + V + AD + S ASI+AK
Sbjct: 112 VEQEIIKLGMEPNIVTN--ADVYFVEASAASIIAK 144
>sp|Q2YB96|RNH2_NITMU Ribonuclease HII OS=Nitrosospira multiformis (strain ATCC 25196 /
NCIMB 11849) GN=rnhB PE=3 SV=1
Length = 199
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 74/166 (44%), Gaps = 31/166 (18%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
P + G+DEAGRGP+ GP+ C+ P S L ADSKTL E KR L +K
Sbjct: 7 PWVCGVDEAGRGPLAGPVFAACVILDPASPIDGL-----ADSKTLTEGKRNSLTLAIKAY 61
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
S+ WA+ RE+ N + + ++ AIG + + V +D
Sbjct: 62 -SIAWAIGFASVREID----RLNILQASLLAMKRAIG------KLPVTPARVLVD----- 105
Query: 133 EKYQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKRSNFERM 176
P +KF V+ + DSL P +S ASI+AK + M
Sbjct: 106 -------GNHSPRLKFPVTTIVRGDSLVPEISAASILAKTARDAEM 144
>sp|Q8R9X9|RNH2_THETN Ribonuclease HII OS=Thermoanaerobacter tengcongensis (strain DSM
15242 / JCM 11007 / NBRC 100824 / MB4) GN=rnhB PE=3 SV=1
Length = 241
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP++GP+V C+ P + + DSK L EEKRE+L E +K +++
Sbjct: 59 IAGVDEAGRGPLVGPVVAACVILP----KEIFIPEINDSKKLPEEKREKLAEVIK-KEAI 113
Query: 76 GWAVDIIDPREL 87
+ + I+D RE+
Sbjct: 114 SYGIGIVDCREI 125
>sp|O27102|RNH2_METTH Ribonuclease HII OS=Methanothermobacter thermautotrophicus (strain
ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta
H) GN=rnhB PE=3 SV=1
Length = 206
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++GIDEAGRGPV+GP+V + P L + DSK L E+R L ++ V
Sbjct: 3 VLGIDEAGRGPVIGPLVVAGVMIPERKFSILRKMGVKDSKKLTPERRRFLARKIRRIARV 62
Query: 76 GWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ V I SA +++ + NLNEI + +I +++ V +
Sbjct: 63 -FTVKI------SASDIDRMRERGFNLNEIEKIAIKRIIPEAQPDRVIIDSVDV----KP 111
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
E+ + ++ F I+ AD+ Y V+ ASI+AK
Sbjct: 112 ERLEEEIRSHFGEIEVTAEHGADTRYYPVAAASIIAK 148
>sp|B8FRK8|RNH2_DESHD Ribonuclease HII OS=Desulfitobacterium hafniense (strain DCB-2 /
DSM 10664) GN=rnhB PE=3 SV=1
Length = 260
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+V P + L LN DSK L E KRE+LF+ +K ++
Sbjct: 75 IAGIDEAGRGPLAGPVVAATCILPAKF--NLPGLN--DSKKLTESKREKLFQQIK-EQAI 129
Query: 76 GWAVDIIDPREL 87
G+AV +P E+
Sbjct: 130 GYAVGSAEPAEI 141
>sp|Q24UB4|RNH2_DESHY Ribonuclease HII OS=Desulfitobacterium hafniense (strain Y51)
GN=rnhB PE=3 SV=1
Length = 260
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+V P + L LN DSK L E KRE+LF+ +K ++
Sbjct: 75 IAGIDEAGRGPLAGPVVAATCILPAKF--NLPGLN--DSKKLTESKREKLFQQIK-EQAI 129
Query: 76 GWAVDIIDPREL 87
G+AV +P E+
Sbjct: 130 GYAVGSAEPAEI 141
>sp|A2STJ6|RNH2_METLZ Ribonuclease HII OS=Methanocorpusculum labreanum (strain ATCC 43576
/ DSM 4855 / Z) GN=rnhB PE=3 SV=1
Length = 212
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 74/158 (46%), Gaps = 20/158 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAG+GPVLGPM+ + S L L DSK L +KRE LFE++ +
Sbjct: 3 ICGVDEAGKGPVLGPMITAGVL--VSDMSELEMLGIKDSKKLSPKKRESLFEEI----TF 56
Query: 76 GWAVDII--DPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DA 132
W + P ++ ++ N S + R L VYLD +A
Sbjct: 57 SWKTYTVVRTPFDIDSREGTMNAFTA------SCHADVVRALCADF----VYLDACDVNA 106
Query: 133 EKYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAK 169
+++ + + S V S+ KAD+ Y VV ASIVAK
Sbjct: 107 KRFGENVLRLSGSSAHVCSEHKADAKYAVVGAASIVAK 144
>sp|B6YVT5|RNH2_THEON Ribonuclease HII OS=Thermococcus onnurineus (strain NA1) GN=rnhB
PE=3 SV=1
Length = 227
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 80/162 (49%), Gaps = 23/162 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGPVLGPMV + L L DSK L ++RE LF+++
Sbjct: 3 LAGIDEAGRGPVLGPMVIAAVVVDEGNVPKLEELGVKDSKKLTPKRRERLFDEI------ 56
Query: 76 GWAVDIIDPR---ELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT--VG 130
V ++D EL + ++ + LNE ++ + + ++ + VY+D V
Sbjct: 57 ---VQLLDDYVILELWPEEIDSREGTLNEFEVENFVKALN---SLKVKPDVVYIDAADVK 110
Query: 131 DA---EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
+A E+ +AKL F + + KAD + VS ASI+AK
Sbjct: 111 EARFGEEIKAKLD--FEA-DIIAEHKADDKFVPVSAASILAK 149
>sp|A7FW05|RNH2_CLOB1 Ribonuclease HII OS=Clostridium botulinum (strain ATCC 19397 / Type
A) GN=rnhB PE=3 SV=1
Length = 269
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
++ +N I G+DE GRGP+ GP+V + + ++ N DSK L E+KREEL D
Sbjct: 78 RYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRVFNIKDSKKLSEKKREEL--D 135
Query: 69 LKVND-SVGWAVDIIDPRELSAK 90
+ + + ++ + + ++D + + +
Sbjct: 136 IIIREKAISYNIALVDNKTIDER 158
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,007,598
Number of Sequences: 539616
Number of extensions: 2357302
Number of successful extensions: 7539
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 354
Number of HSP's that attempted gapping in prelim test: 6461
Number of HSP's gapped (non-prelim): 833
length of query: 178
length of database: 191,569,459
effective HSP length: 110
effective length of query: 68
effective length of database: 132,211,699
effective search space: 8990395532
effective search space used: 8990395532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)