BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030403
MAHRRCLHVLSRHAAALLSLKTPPTLPFSTSISLKGLTPFQHRSLISSTLGPTNWSHYRH
FSSNKNDDEGEDVDEDEDEDEETADESYEGEEIGDTVPDLGREYTLEEKEAEAAEIGYKV
LGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLSFERPCWF

High Scoring Gene Products

Symbol, full name Information P value
NFD1
AT4G30930 		protein from Arabidopsis thaliana 3.5e-27

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030403
        (178 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2126699 - symbol:NFD1 "NUCLEAR FUSION DEFECTIV...   305  3.5e-27   1


>TAIR|locus:2126699 [details] [associations]
            symbol:NFD1 "NUCLEAR FUSION DEFECTIVE 1" species:3702
            "Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
            [GO:0005840 "ribosome" evidence=ISS] [GO:0006412 "translation"
            evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
            [GO:0000741 "karyogamy" evidence=RCA;IMP] [GO:0005739
            "mitochondrion" evidence=IDA] [GO:0009553 "embryo sac development"
            evidence=IMP] [GO:0009555 "pollen development" evidence=IMP]
            [GO:0009567 "double fertilization forming a zygote and endosperm"
            evidence=IMP] [GO:0001510 "RNA methylation" evidence=RCA]
            [GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006606
            "protein import into nucleus" evidence=RCA] [GO:0009560 "embryo sac
            egg cell differentiation" evidence=RCA] [GO:0016572 "histone
            phosphorylation" evidence=RCA] [GO:0051567 "histone H3-K9
            methylation" evidence=RCA] InterPro:IPR001787 InterPro:IPR018258
            Pfam:PF00829 PROSITE:PS01169 GO:GO:0005739 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0009555 GO:GO:0006412 GO:GO:0005840
            GO:GO:0003735 GO:GO:0009553 EMBL:AL022198 GO:GO:0019843
            EMBL:AL161578 GO:GO:0000741 GO:GO:0009567 PANTHER:PTHR21349
            TIGRFAMs:TIGR00061 EMBL:AJ278909 EMBL:BT005870 EMBL:AY088563
            IPI:IPI00547532 PIR:B85362 RefSeq:NP_567861.1 UniGene:At.23122
            ProteinModelPortal:Q8L9A0 SMR:Q8L9A0 IntAct:Q8L9A0 STRING:Q8L9A0
            PaxDb:Q8L9A0 PRIDE:Q8L9A0 EnsemblPlants:AT4G30930.1 GeneID:829217
            KEGG:ath:AT4G30930 TAIR:At4g30930 eggNOG:NOG314874
            InParanoid:Q8L9A0 OMA:ADMEVER PhylomeDB:Q8L9A0
            ProtClustDB:CLSN2695801 Genevestigator:Q8L9A0 GermOnline:AT4G30930
            Uniprot:Q8L9A0
        Length = 270

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 71/179 (39%), Positives = 94/179 (52%)

Query:     1 MAHRRCLHVLSRHAAALLSLKTPPTLPFSTSISLKGLTPFQHRSLISSTLGPTNWSHYRH 60
             MA  RC   LSR A  + S+    ++     I   G T   H ++I +     N   Y H
Sbjct:     1 MASLRCFRELSRRATTVFSINQTRSISSFHGIEFSG-TSISHGTVIPNRSLTRNLPWYSH 59

Query:    61 FSSNKNXXXXXXXXXXXXXXXXXXXXXXXXXXIGDTVPD-----LGREYTLEEKEAEAAE 115
             +  +++                           G+   D     + REY+  EK  EA E
Sbjct:    60 WYRSQDRCFSSNTKDTDEDEESSEGEDDDEEE-GEDFEDSADMEVEREYSPAEKVEEAEE 118

Query:   116 IGYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLSFER 174
             IGYKV+GPL+ S+R+FK YEP FA+VQIGSHQFKVSNGDSIFTE+LKFC++NDKL   +
Sbjct:   119 IGYKVMGPLKPSERLFKPYEPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTK 177


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      178       152   0.00073  105 3  11 22  0.47    31
                                                     30  0.40    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  590 (63 KB)
  Total size of DFA:  148 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.90u 0.17s 14.07t   Elapsed:  00:00:01
  Total cpu time:  13.90u 0.17s 14.07t   Elapsed:  00:00:01
  Start:  Mon May 20 17:39:51 2013   End:  Mon May 20 17:39:52 2013

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