BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030403
(178 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L9A0|RM21_ARATH 50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana
GN=RPL21M PE=2 SV=1
Length = 270
Score = 123 bits (309), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 84/183 (45%), Positives = 113/183 (61%), Gaps = 15/183 (8%)
Query: 1 MAHRRCLHVLSRHAAALLSLKTPPTLP------FS-TSISLKGLTPFQHRSLISSTLGPT 53
MA RC LSR A + S+ ++ FS TSIS + P +RSL + +
Sbjct: 1 MASLRCFRELSRRATTVFSINQTRSISSFHGIEFSGTSISHGTVIP--NRSLTRNLPWYS 58
Query: 54 NW--SHYRHFSSNKNDDEGEDVDEDEDEDEETADESYEGEEIGDTVPDLGREYTLEEKEA 111
+W S R FSSN D + ++ + ++D+E E +E D ++ REY+ EK
Sbjct: 59 HWYRSQDRCFSSNTKDTDEDEESSEGEDDDEEEGEDFEDS--ADM--EVEREYSPAEKVE 114
Query: 112 EAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLS 171
EA EIGYKV+GPL+ S+R+FK YEP FA+VQIGSHQFKVSNGDSIFTE+LKFC++NDKL
Sbjct: 115 EAEEIGYKVMGPLKPSERLFKPYEPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLE 174
Query: 172 FER 174
+
Sbjct: 175 LTK 177
>sp|P24613|RK21_SPIOL 50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea
GN=RPL21 PE=1 SV=1
Length = 256
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLSFER 174
FAVV IGS Q+ V G I+T+RLK VNDK+ +
Sbjct: 124 FAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNK 160
>sp|P51412|RK21_ARATH 50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana
GN=RPL21 PE=2 SV=1
Length = 220
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%)
Query: 105 TLEEKEAEAAEIGYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFC 164
++ E E E +I V+ + + K E FAV+ +G Q+ V G ++T+RLK
Sbjct: 68 SVVEAEPETTDIEAVVVSDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDA 127
Query: 165 EVNDKLSFER 174
V+D++ +
Sbjct: 128 NVDDQIVLNK 137
>sp|B5ZB20|RL21_UREU1 50S ribosomal protein L21 OS=Ureaplasma urealyticum serovar 10
(strain ATCC 33699 / Western) GN=rplU PE=3 SV=1
Length = 100
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLSFERPCW 177
FA+ Q G Q+KV G+ I+ E+L EV K+SF++
Sbjct: 2 FAIFQTGGKQYKVQQGEKIYVEKLDL-EVGSKISFDQVIM 40
>sp|Q9PQT0|RL21_UREPA 50S ribosomal protein L21 OS=Ureaplasma parvum serovar 3 (strain
ATCC 700970) GN=rplU PE=3 SV=1
Length = 100
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLSFERPCW 177
FA+ Q G Q+KV G+ I+ E+L EV K+SF++
Sbjct: 2 FAIFQTGGKQYKVQQGEKIYVEKLDL-EVGSKISFDQVIM 40
>sp|B1AIK0|RL21_UREP2 50S ribosomal protein L21 OS=Ureaplasma parvum serovar 3 (strain
ATCC 27815 / 27 / NCTC 11736) GN=rplU PE=3 SV=1
Length = 100
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLSFERPCW 177
FA+ Q G Q+KV G+ I+ E+L EV K+SF++
Sbjct: 2 FAIFQTGGKQYKVQQGEKIYVEKLDL-EVGSKISFDQVIM 40
>sp|Q9N3X8|SDK_CAEEL Protein sidekick homolog OS=Caenorhabditis elegans GN=rig-4 PE=1 SV=2
Length = 2325
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 11/73 (15%)
Query: 20 LKTPPTLPFSTSISLKGLTPFQHRSLISSTLGP--TNWS--------HYRHFSSNKNDDE 69
++T P+ PF+ ISLK TP++ S+ + P + W+ HYR + SN+
Sbjct: 1561 MRTLPSAPFAQPISLKA-TPYERNSVQLEWVVPHKSTWNSDAIGYRIHYREYPSNETWQM 1619
Query: 70 GEDVDEDEDEDEE 82
E DE ED+E
Sbjct: 1620 EEIAIRDEHEDKE 1632
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,344,669
Number of Sequences: 539616
Number of extensions: 3085974
Number of successful extensions: 46562
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 439
Number of HSP's that attempted gapping in prelim test: 31490
Number of HSP's gapped (non-prelim): 8994
length of query: 178
length of database: 191,569,459
effective HSP length: 110
effective length of query: 68
effective length of database: 132,211,699
effective search space: 8990395532
effective search space used: 8990395532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)