Query 030403
Match_columns 178
No_of_seqs 117 out of 760
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 21:28:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030403.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030403hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_R 50S ribosomal protein L 99.6 1E-15 3.5E-20 115.6 5.0 41 137-178 1-41 (103)
2 3v2d_V 50S ribosomal protein L 99.6 2.7E-15 9.1E-20 113.2 5.4 40 137-178 1-40 (101)
3 3bbo_T Ribosomal protein L21; 99.5 2.5E-15 8.4E-20 129.3 -0.4 49 130-178 117-165 (257)
4 2zjr_O 50S ribosomal protein L 99.5 2.9E-15 9.9E-20 112.6 -0.2 40 137-178 1-40 (100)
5 2ivw_A PILP pilot protein; lip 83.7 1.1 3.6E-05 34.2 3.9 33 118-157 27-59 (113)
6 2lc4_A PILP protein; type IV p 83.4 1.2 4.2E-05 33.8 4.1 34 117-157 30-63 (111)
7 2y4x_A PILP protein; biosynthe 82.7 1.4 4.7E-05 32.3 4.0 34 117-157 23-56 (93)
8 4av2_M PILP protein, type IV p 77.3 2.2 7.6E-05 34.3 3.9 33 118-157 95-127 (181)
9 2ozj_A Cupin 2, conserved barr 73.7 3.7 0.00013 28.0 3.8 22 139-160 69-90 (114)
10 4i4a_A Similar to unknown prot 72.0 4.3 0.00015 28.0 3.9 22 139-160 65-86 (128)
11 2arc_A ARAC, arabinose operon 68.6 5.4 0.00018 28.0 3.8 22 139-160 49-70 (164)
12 2opk_A Hypothetical protein; p 68.2 3.3 0.00011 29.2 2.6 22 139-160 64-87 (112)
13 1v70_A Probable antibiotics sy 67.9 6.4 0.00022 25.3 3.8 21 140-160 61-81 (105)
14 3lwc_A Uncharacterized protein 67.3 5.8 0.0002 28.6 3.8 22 139-160 70-91 (119)
15 3d82_A Cupin 2, conserved barr 67.0 4.6 0.00016 26.4 3.0 22 139-160 61-82 (102)
16 2gu9_A Tetracenomycin polyketi 65.1 6.1 0.00021 26.1 3.3 21 140-160 56-76 (113)
17 3fjs_A Uncharacterized protein 64.9 5.7 0.00019 27.8 3.3 21 140-160 68-88 (114)
18 1o5u_A Novel thermotoga mariti 63.6 7.2 0.00025 27.5 3.7 22 139-160 60-82 (101)
19 3cew_A Uncharacterized cupin p 62.8 6.8 0.00023 27.1 3.4 22 139-160 59-80 (125)
20 2wg5_A General control protein 62.7 4 0.00014 30.0 2.3 34 138-174 51-85 (109)
21 3l2h_A Putative sugar phosphat 62.1 8.1 0.00028 28.2 3.8 21 140-160 80-100 (162)
22 2pfw_A Cupin 2, conserved barr 62.1 9 0.00031 25.8 3.8 21 140-160 66-86 (116)
23 2pyt_A Ethanolamine utilizatio 61.7 8.6 0.00029 28.4 3.9 22 139-160 86-107 (133)
24 1w4t_A Arylamine N-acetyltrans 60.9 9.7 0.00033 32.2 4.6 42 112-153 103-150 (299)
25 4h7l_A Uncharacterized protein 60.7 4.7 0.00016 31.8 2.5 21 140-160 80-100 (157)
26 1yhf_A Hypothetical protein SP 60.1 11 0.00036 25.4 3.9 21 140-160 72-92 (115)
27 1e2t_A NAT, N-hydroxyarylamine 59.1 12 0.0004 31.3 4.7 42 112-153 82-127 (284)
28 3ibm_A Cupin 2, conserved barr 58.9 9.4 0.00032 28.8 3.8 21 140-160 88-108 (167)
29 2bsz_A Arylamine N-acetyltrans 58.7 14 0.00047 30.8 5.1 42 112-153 83-129 (278)
30 3kgz_A Cupin 2 conserved barre 58.5 10 0.00035 28.6 3.9 22 139-160 75-96 (156)
31 2lnv_A General secretion pathw 58.5 6.8 0.00023 29.3 2.8 37 116-157 24-60 (104)
32 4axo_A EUTQ, ethanolamine util 58.0 10 0.00035 29.4 3.9 21 140-160 96-116 (151)
33 3h8u_A Uncharacterized conserv 57.5 8 0.00027 26.6 3.0 22 139-160 71-93 (125)
34 1o4t_A Putative oxalate decarb 57.5 9.3 0.00032 27.2 3.4 21 140-160 90-110 (133)
35 3d9w_A Putative acetyltransfer 57.3 8.5 0.00029 32.4 3.6 42 112-153 92-138 (293)
36 2b8m_A Hypothetical protein MJ 56.9 8.1 0.00028 26.3 2.9 22 139-160 58-80 (117)
37 2vfb_A Arylamine N-acetyltrans 56.5 12 0.0004 31.2 4.3 42 112-153 80-129 (280)
38 2i45_A Hypothetical protein; n 56.1 9.4 0.00032 25.7 3.1 21 140-160 60-81 (107)
39 1y9q_A Transcriptional regulat 55.6 12 0.00039 28.0 3.7 21 140-160 138-158 (192)
40 4e2q_A Ureidoglycine aminohydr 55.0 11 0.00037 31.8 3.9 23 138-160 217-239 (266)
41 2o8q_A Hypothetical protein; c 54.6 13 0.00044 25.9 3.7 21 140-160 76-97 (134)
42 2vpv_A Protein MIF2, MIF2P; nu 54.5 12 0.00043 29.4 3.9 20 141-160 123-142 (166)
43 4e2g_A Cupin 2 conserved barre 53.5 12 0.00041 25.6 3.3 21 140-160 73-93 (126)
44 1sef_A Conserved hypothetical 52.9 13 0.00044 30.0 3.9 22 139-160 214-235 (274)
45 2zd7_A VPS75, vacuolar protein 52.8 1 3.5E-05 37.9 -2.7 10 54-63 208-218 (264)
46 1w5r_A Arylamine N-acetyltrans 52.5 12 0.0004 31.1 3.7 42 112-153 83-132 (278)
47 1rc6_A Hypothetical protein YL 51.5 12 0.0004 29.8 3.4 22 139-160 211-232 (261)
48 3h43_A Proteasome-activating n 51.4 7.8 0.00027 27.5 2.1 35 137-174 31-66 (85)
49 2q30_A Uncharacterized protein 51.2 9.5 0.00032 25.2 2.4 21 140-160 67-88 (110)
50 2ayu_A Nucleosome assembly pro 51.2 3.2 0.00011 37.5 0.0 10 54-63 352-362 (417)
51 3ht1_A REMF protein; cupin fol 51.1 14 0.00047 25.7 3.3 21 140-160 71-93 (145)
52 3jzv_A Uncharacterized protein 50.8 15 0.00052 28.0 3.8 21 140-160 85-105 (166)
53 1vj2_A Novel manganese-contain 49.7 13 0.00043 26.1 3.0 21 140-160 80-100 (126)
54 1sfn_A Conserved hypothetical 49.0 17 0.00057 29.0 3.9 22 139-160 197-218 (246)
55 2ija_A Arylamine N-acetyltrans 48.5 20 0.00067 29.9 4.4 42 112-153 83-129 (295)
56 3i7d_A Sugar phosphate isomera 48.2 18 0.00062 27.0 3.8 22 140-161 77-98 (163)
57 3oss_C Type 2 secretion system 47.4 16 0.00054 25.3 3.1 33 117-157 8-40 (68)
58 2bnm_A Epoxidase; oxidoreducta 43.7 24 0.00081 26.2 3.8 21 140-160 152-176 (198)
59 3bcw_A Uncharacterized protein 43.5 21 0.00072 26.1 3.5 22 139-160 79-101 (123)
60 2fqp_A Hypothetical protein BP 43.4 21 0.00073 23.8 3.2 22 139-160 50-73 (97)
61 3m9b_A Proteasome-associated A 42.8 8.7 0.0003 32.9 1.4 39 135-176 109-147 (251)
62 3h7j_A Bacilysin biosynthesis 42.7 23 0.00079 27.9 3.8 22 139-160 177-198 (243)
63 3rns_A Cupin 2 conserved barre 42.7 20 0.00068 28.0 3.4 22 139-160 184-205 (227)
64 1pyv_A ATP synthase beta chain 42.3 14 0.00047 25.0 2.0 16 1-16 1-16 (54)
65 2f4p_A Hypothetical protein TM 40.5 23 0.00078 25.8 3.2 21 140-160 80-101 (147)
66 1lr5_A Auxin binding protein 1 38.7 26 0.00088 25.5 3.3 21 140-160 73-102 (163)
67 1y3t_A Hypothetical protein YX 38.5 29 0.001 27.7 3.8 22 140-161 251-272 (337)
68 2oa2_A BH2720 protein; 1017534 37.2 23 0.00078 25.5 2.8 21 140-160 76-102 (148)
69 1rc6_A Hypothetical protein YL 36.4 28 0.00096 27.6 3.4 21 140-160 93-113 (261)
70 3rns_A Cupin 2 conserved barre 34.0 30 0.001 27.0 3.2 21 140-160 69-89 (227)
71 1sq4_A GLXB, glyoxylate-induce 33.2 29 0.001 28.4 3.1 21 140-160 102-122 (278)
72 1kn6_A Prohormone convertase 1 33.2 32 0.0011 24.8 3.0 23 106-128 23-45 (90)
73 1sq4_A GLXB, glyoxylate-induce 33.0 39 0.0014 27.6 3.8 22 139-160 223-244 (278)
74 1sfn_A Conserved hypothetical 32.8 28 0.00096 27.6 2.9 21 140-160 80-100 (246)
75 1sef_A Conserved hypothetical 32.2 30 0.001 27.8 3.0 21 140-160 96-116 (274)
76 3lnb_A N-acetyltransferase fam 32.1 53 0.0018 28.1 4.6 42 112-153 109-155 (309)
77 1y3t_A Hypothetical protein YX 31.6 44 0.0015 26.6 3.8 21 140-160 79-99 (337)
78 2fho_A Spliceosomal protein SF 30.1 17 0.00058 24.1 0.9 26 98-124 16-41 (47)
79 2byk_A Chrac-16; nucleosome sl 29.5 11 0.00039 29.1 0.0 10 8-17 55-64 (140)
80 1dgw_A Canavalin; duplicated s 28.5 36 0.0012 25.8 2.7 16 145-160 82-97 (178)
81 2kmt_A CCDB; toxin; NMR {Vibri 28.3 46 0.0016 24.3 3.2 46 115-160 31-77 (105)
82 3bbo_G Ribosomal protein L4; l 27.9 13 0.00043 32.4 0.0 7 61-67 259-265 (293)
83 1x82_A Glucose-6-phosphate iso 27.2 33 0.0011 26.3 2.3 21 140-160 108-133 (190)
84 3bu7_A Gentisate 1,2-dioxygena 26.8 53 0.0018 29.0 3.8 21 140-160 326-346 (394)
85 3ay5_A Cyclin-D1-binding prote 26.4 26 0.0009 30.4 1.8 10 102-111 231-240 (360)
86 1juh_A Quercetin 2,3-dioxygena 25.1 50 0.0017 27.8 3.2 22 139-160 283-305 (350)
87 2d40_A Z3393, putative gentisa 24.5 68 0.0023 27.2 3.9 21 141-161 301-321 (354)
88 1kca_A Repressor protein CI; g 24.4 72 0.0025 22.4 3.5 24 149-172 32-55 (109)
89 2wfw_A ARC; ATP-binding protei 24.0 49 0.0017 26.5 2.8 37 138-177 21-57 (153)
90 2vd8_A Alanine racemase; pyrid 23.4 92 0.0031 26.2 4.5 32 142-173 305-339 (391)
91 2hd3_A Ethanolamine utilizatio 23.0 73 0.0025 23.7 3.4 53 119-172 5-57 (103)
92 2cqa_A RUVB-like 2; TIP48, TIP 22.9 21 0.00071 26.5 0.4 28 135-162 42-75 (95)
93 1zrr_A E-2/E-2' protein; nicke 22.1 46 0.0016 26.2 2.2 18 143-160 117-136 (179)
94 3lqv_P Splicing factor 3B subu 21.6 25 0.00087 22.6 0.5 22 99-121 18-39 (39)
95 2d40_A Z3393, putative gentisa 20.7 50 0.0017 28.0 2.4 19 142-160 135-153 (354)
96 3h7j_A Bacilysin biosynthesis 20.3 79 0.0027 24.8 3.3 21 140-160 66-87 (243)
97 2qtf_A Protein HFLX, GTP-bindi 20.3 75 0.0026 26.9 3.4 25 103-127 10-34 (364)
98 5csm_A Chorismate mutase; chor 20.2 36 0.0012 29.4 1.4 10 5-14 149-158 (256)
99 2vqa_A SLL1358 protein, MNCA; 20.1 86 0.0029 25.6 3.6 17 144-160 274-292 (361)
100 4e2q_A Ureidoglycine aminohydr 20.1 53 0.0018 27.6 2.4 20 140-159 102-122 (266)
No 1
>3r8s_R 50S ribosomal protein L21; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ...
Probab=99.58 E-value=1e-15 Score=115.60 Aligned_cols=41 Identities=27% Similarity=0.466 Sum_probs=39.8
Q ss_pred eEEEEeeCCeEEEEeCCCEEEecccCCCCCCCeEEecccccC
Q 030403 137 AFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLSFERPCWF 178 (178)
Q Consensus 137 MYAIVeiGGKQYKV~eGD~I~VErL~~aEvGdkI~LdkVLLv 178 (178)
|||||++|||||||++||+|+||+|+ +++|++|+|++|||+
T Consensus 1 MyAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~v~~~~VLlv 41 (103)
T 3r8s_R 1 MYAVFQSGGKQHRVSEGQTVRLEKLD-IATGETVEFAEVLMI 41 (103)
T ss_dssp CEEEEECSSSEEEEETTCEEEESCCC-SCTTCEEEECCEEEE
T ss_pred CEEEEEECCEEEEEeCCCEEEECCcC-CCCCCEEEEeEEEEE
Confidence 99999999999999999999999997 899999999999985
No 2
>3v2d_V 50S ribosomal protein L21; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_P 2hgj_U 2hgq_U 2hgu_U 1vsa_P 2j03_V 2jl6_V 2jl8_V 2v47_V 2v49_V 2wdi_V 2wdj_V 2wdl_V 2wdn_V 2wh2_V 2wh4_V 2wrj_V 2wrl_V 2wro_V 2wrr_V ...
Probab=99.56 E-value=2.7e-15 Score=113.25 Aligned_cols=40 Identities=25% Similarity=0.451 Sum_probs=38.8
Q ss_pred eEEEEeeCCeEEEEeCCCEEEecccCCCCCCCeEEecccccC
Q 030403 137 AFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLSFERPCWF 178 (178)
Q Consensus 137 MYAIVeiGGKQYKV~eGD~I~VErL~~aEvGdkI~LdkVLLv 178 (178)
|||||++|||||||++||+|+||+|+ +++|++|+|+ |||+
T Consensus 1 MyAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~v~~~-VLlv 40 (101)
T 3v2d_V 1 MFAIVKTGGKQYRVEPGLKLRVEKLD-AEPGATVELP-VLLL 40 (101)
T ss_dssp CEEEEEETTEEEEECTTCEEEESCCS-CCTTCEEEEC-EEEE
T ss_pred CEEEEEeCCEEEEEeCCCEEEECCcC-CCCCCEEEEE-EEEE
Confidence 99999999999999999999999997 8999999999 9985
No 3
>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.48 E-value=2.5e-15 Score=129.30 Aligned_cols=49 Identities=41% Similarity=0.480 Sum_probs=40.6
Q ss_pred ccccCCceEEEEeeCCeEEEEeCCCEEEecccCCCCCCCeEEecccccC
Q 030403 130 VFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLSFERPCWF 178 (178)
Q Consensus 130 ~~k~~~~MYAIVeiGGKQYKV~eGD~I~VErL~~aEvGdkI~LdkVLLv 178 (178)
..+.+++|||||++|||||||++||+|+|++|.++++|++|+|++|||+
T Consensus 117 ~~k~~~~MYAIIetGGKQYKV~~GD~I~VEKL~~aevGd~V~LdkVLlV 165 (257)
T 3bbo_T 117 PPPREEIIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLV 165 (257)
T ss_dssp -------CCCCCCSSSCCCCCCTTCCCCCCCCTTSCTTCEEECTTCCCB
T ss_pred CCCcCCCeEEEEEECCEEEEEeCCCEEEEeCCCCCCCCCEEEEEEEEEE
Confidence 3556678999999999999999999999999976899999999999985
No 4
>2zjr_O 50S ribosomal protein L21; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.155.1.1 PDB: 1nwx_P* 1nwy_P* 1pnu_P 1pny_P 1sm1_P* 1vor_S 1vou_S 1vow_S 1voy_S 1vp0_S 1xbp_P* 1yl3_2 2b66_V 2b9n_V 2b9p_V 2zjp_O* 2zjq_O 1nkw_P 3cf5_O* 3dll_O* ...
Probab=99.48 E-value=2.9e-15 Score=112.65 Aligned_cols=40 Identities=38% Similarity=0.661 Sum_probs=34.8
Q ss_pred eEEEEeeCCeEEEEeCCCEEEecccCCCCCCCeEEecccccC
Q 030403 137 AFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLSFERPCWF 178 (178)
Q Consensus 137 MYAIVeiGGKQYKV~eGD~I~VErL~~aEvGdkI~LdkVLLv 178 (178)
|||||++|||||||++||+|+||+|+ +++|++|+|+ |||+
T Consensus 1 myAIi~~gGkQykV~~Gd~i~vekl~-~~~G~~v~~~-VLlv 40 (100)
T 2zjr_O 1 MFAIIQTGGKQYRVSEGDVIRVESLQ-GEAGDKVELK-ALFV 40 (100)
T ss_dssp ----CCSSCCSCCSCCEEEEECCSCC-SSCCEEEECC-SCEE
T ss_pred CEEEEEECCEEEEEeCCCEEEEcccC-CCCCCEEEEE-EEEE
Confidence 99999999999999999999999997 8999999999 9984
No 5
>2ivw_A PILP pilot protein; lipoprotein, pilus biogenesis, secretin; NMR {Neisseria meningitidis}
Probab=83.65 E-value=1.1 Score=34.19 Aligned_cols=33 Identities=12% Similarity=0.250 Sum_probs=28.1
Q ss_pred cEEecccccCccccccCCceEEEEeeCCeEEEEeCCCEEE
Q 030403 118 YKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIF 157 (178)
Q Consensus 118 ykvvg~~~~~~~~~k~~~~MYAIVeiGGKQYKV~eGD~I~ 157 (178)
.|.||.|... ...+|+|+..|+=|+|+.|++|=
T Consensus 27 LkmvGtl~~~-------~~~~ALV~~dG~vyrVk~G~yiG 59 (113)
T 2ivw_A 27 MRYVGILKSG-------QKVSGFIEAEGYVYTVGVGNYLG 59 (113)
T ss_dssp EEEEEEEECS-------SSEEEEEEETTEEEEECSSEEET
T ss_pred eEEEEEEccC-------CeEEEEEEeCCcEEEEccCCEec
Confidence 6888887664 45899999999999999999983
No 6
>2lc4_A PILP protein; type IV pilus, structural protein; NMR {Pseudomonas aeruginosa}
Probab=83.42 E-value=1.2 Score=33.78 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=28.6
Q ss_pred CcEEecccccCccccccCCceEEEEeeCCeEEEEeCCCEEE
Q 030403 117 GYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIF 157 (178)
Q Consensus 117 gykvvg~~~~~~~~~k~~~~MYAIVeiGGKQYKV~eGD~I~ 157 (178)
-.+.||.|... ..++|+|+..|+=|+|+.|++|=
T Consensus 30 ~L~mvG~l~~~-------~~~~ALV~~dG~vyrVk~G~ylG 63 (111)
T 2lc4_A 30 TFEMVGTLSNA-------QGTFALVKGAGGVHRVRVGDYLG 63 (111)
T ss_dssp SCEEEEEEEET-------TEEEEEEEETTEEEEEETTCEET
T ss_pred heEEEEEEccC-------CeEEEEEEeCCcEEEEccCCEec
Confidence 46888887664 45899999999999999999984
No 7
>2y4x_A PILP protein; biosynthetic protein; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 2y4y_A
Probab=82.72 E-value=1.4 Score=32.31 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=28.6
Q ss_pred CcEEecccccCccccccCCceEEEEeeCCeEEEEeCCCEEE
Q 030403 117 GYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIF 157 (178)
Q Consensus 117 gykvvg~~~~~~~~~k~~~~MYAIVeiGGKQYKV~eGD~I~ 157 (178)
-.|.||.|... ..++|+|+..|+=|+|+.|++|=
T Consensus 23 ~L~mvG~l~~~-------~~~~ALV~~dg~v~~V~~G~yiG 56 (93)
T 2y4x_A 23 TFEMVGTLSNA-------QGTFALVKGAGGVHRVRVGDYLG 56 (93)
T ss_dssp GCEEEEEEEET-------TEEEEEEEETTEEEEECTTCEET
T ss_pred heEEEEEEccC-------CeEEEEEEeCCCEEEEccCCEec
Confidence 36888887664 45899999999999999999984
No 8
>4av2_M PILP protein, type IV pilus biogenesis and competence protein P; protein transport, outer membrane protein; 26.00A {Neisseria meningitidis MC58}
Probab=77.32 E-value=2.2 Score=34.27 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=27.8
Q ss_pred cEEecccccCccccccCCceEEEEeeCCeEEEEeCCCEEE
Q 030403 118 YKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIF 157 (178)
Q Consensus 118 ykvvg~~~~~~~~~k~~~~MYAIVeiGGKQYKV~eGD~I~ 157 (178)
.+.||-|.. ...++|+|+..|+=|+|+.|++|=
T Consensus 95 L~mvG~l~~-------~~~~~alv~~dg~v~~V~~G~ylG 127 (181)
T 4av2_M 95 MRYVGILKS-------GQKVSGFIEAEGYVYTVGVGNYLG 127 (181)
T ss_dssp EEEEEEECS-------SSCCEEEEEETTEEEEECSSEEET
T ss_pred eEEEEEEEe-------CCEEEEEEecCCCEEEEccCCEec
Confidence 588998753 256899999999999999999874
No 9
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=73.70 E-value=3.7 Score=27.99 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=19.2
Q ss_pred EEEeeCCeEEEEeCCCEEEecc
Q 030403 139 AVVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 139 AIVeiGGKQYKV~eGD~I~VEr 160 (178)
+.+.++|+.|.+.+||.|+++.
T Consensus 69 ~~~~i~~~~~~l~~Gd~i~i~~ 90 (114)
T 2ozj_A 69 AVITFDDQKIDLVPEDVLMVPA 90 (114)
T ss_dssp EEEEETTEEEEECTTCEEEECT
T ss_pred EEEEECCEEEEecCCCEEEECC
Confidence 3467899999999999999875
No 10
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=72.05 E-value=4.3 Score=27.99 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=19.2
Q ss_pred EEEeeCCeEEEEeCCCEEEecc
Q 030403 139 AVVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 139 AIVeiGGKQYKV~eGD~I~VEr 160 (178)
+.+.++|+.|.+.+||+++|+.
T Consensus 65 ~~~~i~~~~~~l~~Gd~~~i~~ 86 (128)
T 4i4a_A 65 AIIRINDEDFPVTKGDLIIIPL 86 (128)
T ss_dssp EEEEETTEEEEEETTCEEEECT
T ss_pred EEEEECCEEEEECCCcEEEECC
Confidence 3467899999999999999975
No 11
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=68.58 E-value=5.4 Score=28.03 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.1
Q ss_pred EEEeeCCeEEEEeCCCEEEecc
Q 030403 139 AVVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 139 AIVeiGGKQYKV~eGD~I~VEr 160 (178)
+.+.++|+.|.+++||++.++.
T Consensus 49 ~~~~i~~~~~~l~~Gd~~~i~p 70 (164)
T 2arc_A 49 GVVKNQGREFVCRPGDILLFPP 70 (164)
T ss_dssp EEEEETTEEEEECTTCEEEECT
T ss_pred EEEEECCEEEEecCCeEEEEcC
Confidence 3467899999999999999875
No 12
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=68.15 E-value=3.3 Score=29.15 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=19.4
Q ss_pred EEEeeCCeE--EEEeCCCEEEecc
Q 030403 139 AVVQIGSHQ--FKVSNGDSIFTER 160 (178)
Q Consensus 139 AIVeiGGKQ--YKV~eGD~I~VEr 160 (178)
|.+.++|+. |.+++||.|+++.
T Consensus 64 ~~l~~~~~~~~~~l~~Gd~i~ipa 87 (112)
T 2opk_A 64 AGIECEGDTAPRVMRPGDWLHVPA 87 (112)
T ss_dssp EEEEETTCSSCEEECTTEEEEECT
T ss_pred EEEEECCEEEEEEECCCCEEEECC
Confidence 467899999 9999999999974
No 13
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=67.89 E-value=6.4 Score=25.31 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=18.4
Q ss_pred EEeeCCeEEEEeCCCEEEecc
Q 030403 140 VVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 140 IVeiGGKQYKV~eGD~I~VEr 160 (178)
.+.++|+.|.+.+||+++++.
T Consensus 61 ~~~~~~~~~~l~~Gd~~~ip~ 81 (105)
T 1v70_A 61 VVRVGEEEALLAPGMAAFAPA 81 (105)
T ss_dssp EEEETTEEEEECTTCEEEECT
T ss_pred EEEECCEEEEeCCCCEEEECC
Confidence 467889999999999999874
No 14
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=67.27 E-value=5.8 Score=28.61 Aligned_cols=22 Identities=9% Similarity=0.286 Sum_probs=19.2
Q ss_pred EEEeeCCeEEEEeCCCEEEecc
Q 030403 139 AVVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 139 AIVeiGGKQYKV~eGD~I~VEr 160 (178)
+.|.++|+.+.+.+||.|++..
T Consensus 70 ~~~~~~g~~~~l~~GD~v~ip~ 91 (119)
T 3lwc_A 70 LSVSTDGETVTAGPGEIVYMPK 91 (119)
T ss_dssp EEEEETTEEEEECTTCEEEECT
T ss_pred EEEEECCEEEEECCCCEEEECC
Confidence 4567899999999999999875
No 15
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=67.00 E-value=4.6 Score=26.36 Aligned_cols=22 Identities=5% Similarity=0.218 Sum_probs=18.8
Q ss_pred EEEeeCCeEEEEeCCCEEEecc
Q 030403 139 AVVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 139 AIVeiGGKQYKV~eGD~I~VEr 160 (178)
+.+.++|+.|.+.+||.++++.
T Consensus 61 ~~~~~~~~~~~l~~Gd~~~ip~ 82 (102)
T 3d82_A 61 LQIAFRDQNITLQAGEMYVIPK 82 (102)
T ss_dssp EEEECSSCEEEEETTEEEEECT
T ss_pred EEEEECCEEEEEcCCCEEEECC
Confidence 3467889999999999999875
No 16
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=65.08 E-value=6.1 Score=26.07 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=18.3
Q ss_pred EEeeCCeEEEEeCCCEEEecc
Q 030403 140 VVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 140 IVeiGGKQYKV~eGD~I~VEr 160 (178)
.+.++|+.|.+.+||.++++.
T Consensus 56 ~~~~~~~~~~l~~Gd~~~i~~ 76 (113)
T 2gu9_A 56 EAIVDGHTQALQAGSLIAIER 76 (113)
T ss_dssp EEEETTEEEEECTTEEEEECT
T ss_pred EEEECCEEEEeCCCCEEEECC
Confidence 367899999999999999874
No 17
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=64.85 E-value=5.7 Score=27.82 Aligned_cols=21 Identities=14% Similarity=0.349 Sum_probs=18.9
Q ss_pred EEeeCCeEEEEeCCCEEEecc
Q 030403 140 VVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 140 IVeiGGKQYKV~eGD~I~VEr 160 (178)
.+.++|+.|.+.+||.|+++.
T Consensus 68 ~~~i~~~~~~l~~Gd~i~ip~ 88 (114)
T 3fjs_A 68 EIGVDGAQRRLHQGDLLYLGA 88 (114)
T ss_dssp EEEETTEEEEECTTEEEEECT
T ss_pred EEEECCEEEEECCCCEEEECC
Confidence 378999999999999999985
No 18
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=63.63 E-value=7.2 Score=27.54 Aligned_cols=22 Identities=14% Similarity=0.309 Sum_probs=18.9
Q ss_pred EEEeeC-CeEEEEeCCCEEEecc
Q 030403 139 AVVQIG-SHQFKVSNGDSIFTER 160 (178)
Q Consensus 139 AIVeiG-GKQYKV~eGD~I~VEr 160 (178)
+.+.++ |+.|.+.+||.|+++.
T Consensus 60 ~~~~i~~g~~~~l~~GD~i~ip~ 82 (101)
T 1o5u_A 60 VEVTTEDGKKYVIEKGDLVTFPK 82 (101)
T ss_dssp EEEEETTCCEEEEETTCEEEECT
T ss_pred EEEEECCCCEEEECCCCEEEECC
Confidence 356788 9999999999999875
No 19
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=62.84 E-value=6.8 Score=27.13 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=19.4
Q ss_pred EEEeeCCeEEEEeCCCEEEecc
Q 030403 139 AVVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 139 AIVeiGGKQYKV~eGD~I~VEr 160 (178)
+.+.++|+.|.+.+||+++++.
T Consensus 59 ~~~~i~~~~~~l~~Gd~i~i~~ 80 (125)
T 3cew_A 59 GFITIDGEKIELQAGDWLRIAP 80 (125)
T ss_dssp EEEEETTEEEEEETTEEEEECT
T ss_pred EEEEECCEEEEeCCCCEEEECC
Confidence 4578999999999999999875
No 20
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=62.70 E-value=4 Score=30.03 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=29.2
Q ss_pred EEEEeeC-CeEEEEeCCCEEEecccCCCCCCCeEEecc
Q 030403 138 FAVVQIG-SHQFKVSNGDSIFTERLKFCEVNDKLSFER 174 (178)
Q Consensus 138 YAIVeiG-GKQYKV~eGD~I~VErL~~aEvGdkI~Ldk 174 (178)
.|||+++ |..|.|.....|..+.| ++|..|-|++
T Consensus 51 ~~iVk~s~g~~~~V~v~~~Vd~~~L---kpG~rVaLn~ 85 (109)
T 2wg5_A 51 RVVVKSSTGPKFVVNTSQYINEEEL---KPGARVALNQ 85 (109)
T ss_dssp CEEEEETTSCEEEECBCTTSCTTTC---CTTCEEEEET
T ss_pred EEEEEeCCCCEEEEEcccccCHHHC---CCCCEEEECC
Confidence 4899988 99999999998876665 7999999987
No 21
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=62.11 E-value=8.1 Score=28.15 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=18.8
Q ss_pred EEeeCCeEEEEeCCCEEEecc
Q 030403 140 VVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 140 IVeiGGKQYKV~eGD~I~VEr 160 (178)
.+.++|+.|.+.+||+|+++.
T Consensus 80 ~~~~~~~~~~l~~Gd~i~i~~ 100 (162)
T 3l2h_A 80 TLTMENDQYPIAPGDFVGFPC 100 (162)
T ss_dssp EEEETTEEEEECTTCEEEECT
T ss_pred EEEECCEEEEeCCCCEEEECC
Confidence 467999999999999999885
No 22
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=62.09 E-value=9 Score=25.80 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=18.4
Q ss_pred EEeeCCeEEEEeCCCEEEecc
Q 030403 140 VVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 140 IVeiGGKQYKV~eGD~I~VEr 160 (178)
.+.++|+.|.+.+||.++++.
T Consensus 66 ~~~~~~~~~~l~~Gd~~~ip~ 86 (116)
T 2pfw_A 66 HVNVDGVIKVLTAGDSFFVPP 86 (116)
T ss_dssp EEEETTEEEEECTTCEEEECT
T ss_pred EEEECCEEEEeCCCCEEEECc
Confidence 467899999999999999874
No 23
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=61.74 E-value=8.6 Score=28.36 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=19.3
Q ss_pred EEEeeCCeEEEEeCCCEEEecc
Q 030403 139 AVVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 139 AIVeiGGKQYKV~eGD~I~VEr 160 (178)
+.|.++|+.|.+.+||.|+++.
T Consensus 86 ~~l~~~g~~~~l~~GD~i~~p~ 107 (133)
T 2pyt_A 86 LHVRHEGETMIAKAGDVMFIPK 107 (133)
T ss_dssp EEEEETTEEEEEETTCEEEECT
T ss_pred EEEEECCEEEEECCCcEEEECC
Confidence 3578899999999999999875
No 24
>1w4t_A Arylamine N-acetyltransferase; 5- aminosalicylic acid, NAT, xenobiotic metabolism, acyltransferase; 1.95A {Pseudomonas aeruginosa} SCOP: d.3.1.5
Probab=60.88 E-value=9.7 Score=32.18 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=30.4
Q ss_pred HHHHhCcEEec---ccc-cCcccc--ccCCceEEEEeeCCeEEEEeCC
Q 030403 112 EAAEIGYKVLG---PLR-KSDRVF--KKYEPAFAVVQIGSHQFKVSNG 153 (178)
Q Consensus 112 ea~~igykvvg---~~~-~~~~~~--k~~~~MYAIVeiGGKQYKV~eG 153 (178)
--.++||+|.. ++. .....+ .+...|.-+|.+.|++|.|-.|
T Consensus 103 ~L~~LGF~V~~l~arV~~~~~~~~~~~~~~H~~l~V~idg~~ylvDVG 150 (299)
T 1w4t_A 103 LLLALGYELELLVARVRWGLPDDAPLTQQSHLMLRLYLAEGEFLVDVG 150 (299)
T ss_dssp HHHHTTCEEEEEEEEECTTCCTTSCCCCEEEEEEEEEETTEEEEECSC
T ss_pred HHHHcCCeEEEEEEEEEeCCCCcCCCCCCccEEEEEEECCceEEEeCC
Confidence 45789999864 443 333334 5677899999999999999655
No 25
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=60.66 E-value=4.7 Score=31.83 Aligned_cols=21 Identities=5% Similarity=0.165 Sum_probs=18.2
Q ss_pred EEeeCCeEEEEeCCCEEEecc
Q 030403 140 VVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 140 IVeiGGKQYKV~eGD~I~VEr 160 (178)
.++++|+.|.|++||+|+|+.
T Consensus 80 ~v~idge~~~l~~GD~v~IPp 100 (157)
T 4h7l_A 80 TIELNGQSYPLTKLLAISIPP 100 (157)
T ss_dssp EEEETTEEEECCTTEEEEECT
T ss_pred EEEECCEEEEeCCCCEEEECC
Confidence 344999999999999999975
No 26
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=60.15 E-value=11 Score=25.38 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=18.2
Q ss_pred EEeeCCeEEEEeCCCEEEecc
Q 030403 140 VVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 140 IVeiGGKQYKV~eGD~I~VEr 160 (178)
.+.++|+.|.+.+||.++++.
T Consensus 72 ~~~~~~~~~~l~~Gd~~~ip~ 92 (115)
T 1yhf_A 72 EITIDQETYRVAEGQTIVMPA 92 (115)
T ss_dssp EEEETTEEEEEETTCEEEECT
T ss_pred EEEECCEEEEECCCCEEEECC
Confidence 456899999999999999875
No 27
>1e2t_A NAT, N-hydroxyarylamine O-acetyltransferase; acetyl COA dependent; 2.8A {Salmonella typhimurium} SCOP: d.3.1.5
Probab=59.08 E-value=12 Score=31.27 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=30.2
Q ss_pred HHHHhCcEEec---cccc-CccccccCCceEEEEeeCCeEEEEeCC
Q 030403 112 EAAEIGYKVLG---PLRK-SDRVFKKYEPAFAVVQIGSHQFKVSNG 153 (178)
Q Consensus 112 ea~~igykvvg---~~~~-~~~~~k~~~~MYAIVeiGGKQYKV~eG 153 (178)
--.++||+|.. ++.. ......+...|.-+|.+.|++|.|-.|
T Consensus 82 ~L~~LGF~V~~~~~rV~~~~~~~~~~~~H~~l~V~idg~~ylvDVG 127 (284)
T 1e2t_A 82 ALRDIGFNVRSLLGRVILSHPASLPPRTHRLLLVDVEDEQWIADVG 127 (284)
T ss_dssp HHHHTTCCEEEEEEEECTTCCSSCCCSCEEEEEEEETTEEEEECSC
T ss_pred HHHHCCCeEEEEEEEEecCCCCCCCCCccEEEEEEECCceEEEecC
Confidence 45789999754 4433 222344778899999999999999754
No 28
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=58.95 E-value=9.4 Score=28.83 Aligned_cols=21 Identities=10% Similarity=0.121 Sum_probs=18.8
Q ss_pred EEeeCCeEEEEeCCCEEEecc
Q 030403 140 VVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 140 IVeiGGKQYKV~eGD~I~VEr 160 (178)
.+.++|+.|.+.+||+|+|+.
T Consensus 88 ~~~i~~~~~~l~~Gd~i~ip~ 108 (167)
T 3ibm_A 88 EVVLDDRVEPLTPLDCVYIAP 108 (167)
T ss_dssp EEEETTEEEEECTTCEEEECT
T ss_pred EEEECCEEEEECCCCEEEECC
Confidence 467999999999999999875
No 29
>2bsz_A Arylamine N-acetyltransferase 1; acyltransferase, complete proteome; 2.0A {Rhizobium loti} SCOP: d.3.1.5
Probab=58.74 E-value=14 Score=30.82 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=30.5
Q ss_pred HHHHhCcEEec---ccc-cCcccc-ccCCceEEEEeeCCeEEEEeCC
Q 030403 112 EAAEIGYKVLG---PLR-KSDRVF-KKYEPAFAVVQIGSHQFKVSNG 153 (178)
Q Consensus 112 ea~~igykvvg---~~~-~~~~~~-k~~~~MYAIVeiGGKQYKV~eG 153 (178)
--.++||+|.. ++. .....+ .+...|.-+|.+.|++|.|-.|
T Consensus 83 ~L~~LGF~V~~~~arV~~~~~~~~~~~~~H~~l~V~idg~~ylvDVG 129 (278)
T 2bsz_A 83 ALKALGFEVGGLAARVLWGQSEDAITARSHMLLRVELDGRTYIADVG 129 (278)
T ss_dssp HHHHHTCEEEEEEEEECSSCCSSSSCCCCEEEEEEEETTEEEEECSC
T ss_pred HHHHCCCeEEEEEEEEeeCCCCCCCCCCccEEEEEEECCceEEEeCC
Confidence 45789999854 442 333344 4678899999999999999754
No 30
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=58.46 E-value=10 Score=28.64 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.5
Q ss_pred EEEeeCCeEEEEeCCCEEEecc
Q 030403 139 AVVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 139 AIVeiGGKQYKV~eGD~I~VEr 160 (178)
+.+.++|+.|.|.+||.|+|+.
T Consensus 75 ~~v~v~g~~~~l~~Gd~i~ip~ 96 (156)
T 3kgz_A 75 GQCLVGETISDVAQGDLVFIPP 96 (156)
T ss_dssp EEEEETTEEEEEETTCEEEECT
T ss_pred EEEEECCEEEEeCCCCEEEECC
Confidence 4568999999999999999975
No 31
>2lnv_A General secretion pathway protein C; transport protein; NMR {Dickeya dadantii}
Probab=58.46 E-value=6.8 Score=29.30 Aligned_cols=37 Identities=14% Similarity=0.274 Sum_probs=30.6
Q ss_pred hCcEEecccccCccccccCCceEEEEeeCCeEEEEeCCCEEE
Q 030403 116 IGYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIF 157 (178)
Q Consensus 116 igykvvg~~~~~~~~~k~~~~MYAIVeiGGKQYKV~eGD~I~ 157 (178)
...+++|.+..++ .+.-+|||+.+|+|.....||.|-
T Consensus 24 L~L~L~GVv~s~~-----~~~S~AII~~~g~Q~~Y~vGd~I~ 60 (104)
T 2lnv_A 24 LNLSLTGVMAGDD-----DSRSIAIISKDNEQFSRGVNEEVP 60 (104)
T ss_dssp CCSEEEEEECCSS-----SSSCEEEEESSSCCEEECTTEECS
T ss_pred cceEEEEEEecCC-----ccccEEEEEcCCeEeEEeCCCCcC
Confidence 5678899887654 255789999999999999999885
No 32
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=58.03 E-value=10 Score=29.38 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=18.7
Q ss_pred EEeeCCeEEEEeCCCEEEecc
Q 030403 140 VVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 140 IVeiGGKQYKV~eGD~I~VEr 160 (178)
.|.++|+.|.+.+||.|++++
T Consensus 96 ~l~i~g~~~~l~~GD~i~iP~ 116 (151)
T 4axo_A 96 DIIIDGRKVSASSGELIFIPK 116 (151)
T ss_dssp EEEETTEEEEEETTCEEEECT
T ss_pred EEEECCEEEEEcCCCEEEECC
Confidence 367899999999999999875
No 33
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=57.54 E-value=8 Score=26.59 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=18.8
Q ss_pred EEEee-CCeEEEEeCCCEEEecc
Q 030403 139 AVVQI-GSHQFKVSNGDSIFTER 160 (178)
Q Consensus 139 AIVei-GGKQYKV~eGD~I~VEr 160 (178)
+.+.+ +|+.|.+++||.|+++.
T Consensus 71 ~~~~~~~~~~~~l~~Gd~~~i~~ 93 (125)
T 3h8u_A 71 AEYHQGNGIVTHLKAGDIAIAKP 93 (125)
T ss_dssp EEEECSTTCEEEEETTEEEEECT
T ss_pred EEEEECCCeEEEeCCCCEEEECC
Confidence 45667 89999999999999875
No 34
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=57.47 E-value=9.3 Score=27.23 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=18.5
Q ss_pred EEeeCCeEEEEeCCCEEEecc
Q 030403 140 VVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 140 IVeiGGKQYKV~eGD~I~VEr 160 (178)
.+.++|+.|.+.+||+++++.
T Consensus 90 ~~~i~~~~~~l~~Gd~i~i~~ 110 (133)
T 1o4t_A 90 VFHDNGKDVPIKAGDVCFTDS 110 (133)
T ss_dssp EEEETTEEEEEETTEEEEECT
T ss_pred EEEECCEEEEeCCCcEEEECC
Confidence 467899999999999999874
No 35
>3d9w_A Putative acetyltransferase; arylamine N-acetyltransferase, NAT, X-RAY diffraction, acyltransferase; 2.70A {Nocardia farcinica}
Probab=57.27 E-value=8.5 Score=32.39 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=31.9
Q ss_pred HHHHhCcEEe---cccccCccccccCCceEEEE-eeC-CeEEEEeCC
Q 030403 112 EAAEIGYKVL---GPLRKSDRVFKKYEPAFAVV-QIG-SHQFKVSNG 153 (178)
Q Consensus 112 ea~~igykvv---g~~~~~~~~~k~~~~MYAIV-eiG-GKQYKV~eG 153 (178)
--.++||+|. |++......+.+...|--+| .+. |++|.|-.|
T Consensus 92 ~L~~LGF~V~~~~arV~~~~~~~~~~~H~~l~V~~l~dg~~ylvDVG 138 (293)
T 3d9w_A 92 ALERLGFGVTGHTGRVTMGAGGLRPATHALLRVTTADDDRVWMCDVG 138 (293)
T ss_dssp HHHHTTCEEEEEEEEECTTCCSCCCEEEEEEEEECSSCSCEEEECCS
T ss_pred HHHHcCCeEEEEEEEEecCCCCCCCCccEEEEEEEcCCCCeEEEecC
Confidence 4568999975 45444333567778899999 999 999999876
No 36
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=56.93 E-value=8.1 Score=26.34 Aligned_cols=22 Identities=5% Similarity=0.228 Sum_probs=19.0
Q ss_pred EEEeeCCeEE-EEeCCCEEEecc
Q 030403 139 AVVQIGSHQF-KVSNGDSIFTER 160 (178)
Q Consensus 139 AIVeiGGKQY-KV~eGD~I~VEr 160 (178)
+.+.++|+.| .+.+||.++++.
T Consensus 58 ~~~~i~~~~~~~l~~Gd~i~ip~ 80 (117)
T 2b8m_A 58 MTLTLEDQEPHNYKEGNIVYVPF 80 (117)
T ss_dssp EEEEETTSCCEEEETTCEEEECT
T ss_pred EEEEECCEEEEEeCCCCEEEECC
Confidence 3577899999 999999999874
No 37
>2vfb_A Arylamine N-acetyltransferase; NAT, acetyl COA, mycobacteria, actyltransferase; 2.00A {Mycobacterium marinum} PDB: 2vfc_A* 3ltw_A*
Probab=56.51 E-value=12 Score=31.18 Aligned_cols=42 Identities=21% Similarity=0.209 Sum_probs=31.3
Q ss_pred HHHHhCcEEec---cc-ccCcccc--ccCCceEEEEeeCCeE--EEEeCC
Q 030403 112 EAAEIGYKVLG---PL-RKSDRVF--KKYEPAFAVVQIGSHQ--FKVSNG 153 (178)
Q Consensus 112 ea~~igykvvg---~~-~~~~~~~--k~~~~MYAIVeiGGKQ--YKV~eG 153 (178)
--.++||+|.. ++ ......+ .+...|.-+|.+.|++ |.|-.|
T Consensus 80 ~L~~LGF~V~~~~arV~~~~~~~~~~~~~~H~~l~V~idg~~~~ylvDVG 129 (280)
T 2vfb_A 80 VLAELGYRVRRLAGRVVWLAPPDAPTPAQTHTVLAVTFPGCQGPYLVDVG 129 (280)
T ss_dssp HHHHHTCEEEEEEEEECTTCCTTSCCCCSCEEEEEEECTTCSSCEEECSC
T ss_pred HHHHCCCeEEEEEEEEEeCCCCCCCCCCCCcEEEEEEECCeEEEEEEecC
Confidence 45789999864 44 3344445 4778999999999999 998655
No 38
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=56.14 E-value=9.4 Score=25.68 Aligned_cols=21 Identities=10% Similarity=0.321 Sum_probs=18.1
Q ss_pred EEeeCC-eEEEEeCCCEEEecc
Q 030403 140 VVQIGS-HQFKVSNGDSIFTER 160 (178)
Q Consensus 140 IVeiGG-KQYKV~eGD~I~VEr 160 (178)
.+.++| +.|.+.+||.++++.
T Consensus 60 ~~~~~~~~~~~l~~Gd~~~ip~ 81 (107)
T 2i45_A 60 AVDFADGGSMTIREGEMAVVPK 81 (107)
T ss_dssp EEEETTSCEEEECTTEEEEECT
T ss_pred EEEECCCcEEEECCCCEEEECC
Confidence 467888 999999999999875
No 39
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=55.57 E-value=12 Score=27.99 Aligned_cols=21 Identities=14% Similarity=0.102 Sum_probs=18.6
Q ss_pred EEeeCCeEEEEeCCCEEEecc
Q 030403 140 VVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 140 IVeiGGKQYKV~eGD~I~VEr 160 (178)
.+.++|+.|.+.+||.|+++.
T Consensus 138 ~~~~~~~~~~l~~GD~i~i~~ 158 (192)
T 1y9q_A 138 KVFFDEQWHELQQGEHIRFFS 158 (192)
T ss_dssp EEEETTEEEEECTTCEEEEEC
T ss_pred EEEECCEEEEeCCCCEEEEcC
Confidence 467899999999999999975
No 40
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=54.98 E-value=11 Score=31.76 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=20.6
Q ss_pred EEEEeeCCeEEEEeCCCEEEecc
Q 030403 138 FAVVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 138 YAIVeiGGKQYKV~eGD~I~VEr 160 (178)
-+++.++|+.|.|++||+|++.-
T Consensus 217 ~g~y~l~~~~~~V~~GD~i~~~~ 239 (266)
T 4e2q_A 217 QGIYRLGDNWYPVQAGDVIWMAP 239 (266)
T ss_dssp EEEEEETTEEEEEETTCEEEECT
T ss_pred eEEEEECCEEEEecCCCEEEECC
Confidence 37889999999999999999864
No 41
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=54.61 E-value=13 Score=25.91 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=18.4
Q ss_pred EEeeCC-eEEEEeCCCEEEecc
Q 030403 140 VVQIGS-HQFKVSNGDSIFTER 160 (178)
Q Consensus 140 IVeiGG-KQYKV~eGD~I~VEr 160 (178)
.+.++| +.|.+.+||.++++.
T Consensus 76 ~~~~~~~~~~~l~~Gd~~~ip~ 97 (134)
T 2o8q_A 76 EFEYEDIGAVMLEAGGSAFQPP 97 (134)
T ss_dssp EEEETTTEEEEEETTCEEECCT
T ss_pred EEEECCcEEEEecCCCEEEECC
Confidence 467888 999999999999874
No 42
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=54.53 E-value=12 Score=29.39 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=18.5
Q ss_pred EeeCCeEEEEeCCCEEEecc
Q 030403 141 VQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 141 VeiGGKQYKV~eGD~I~VEr 160 (178)
|.++|++|.+.+||.++++.
T Consensus 123 vtl~g~~~~L~~Gds~~iP~ 142 (166)
T 2vpv_A 123 VTVCKNKFLSVKGSTFQIPA 142 (166)
T ss_dssp EEETTEEEEEETTCEEEECT
T ss_pred EEECCEEEEEcCCCEEEECC
Confidence 78999999999999999974
No 43
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=53.47 E-value=12 Score=25.64 Aligned_cols=21 Identities=14% Similarity=0.107 Sum_probs=18.5
Q ss_pred EEeeCCeEEEEeCCCEEEecc
Q 030403 140 VVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 140 IVeiGGKQYKV~eGD~I~VEr 160 (178)
.+.++|+.|.+.+||.++++.
T Consensus 73 ~~~~~~~~~~l~~Gd~~~ip~ 93 (126)
T 4e2g_A 73 ELTIGEETRVLRPGMAYTIPG 93 (126)
T ss_dssp EEEETTEEEEECTTEEEEECT
T ss_pred EEEECCEEEEeCCCCEEEECC
Confidence 467899999999999999874
No 44
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=52.89 E-value=13 Score=29.95 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.7
Q ss_pred EEEeeCCeEEEEeCCCEEEecc
Q 030403 139 AVVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 139 AIVeiGGKQYKV~eGD~I~VEr 160 (178)
+.+.++|+.|.|++||+|+++.
T Consensus 214 ~~~~i~~~~~~l~~GD~i~i~~ 235 (274)
T 1sef_A 214 GMYNLDNEWYPVEKGDYIFMSA 235 (274)
T ss_dssp EEEEETTEEEEEETTCEEEECT
T ss_pred EEEEECCEEEEECCCCEEEECC
Confidence 4678999999999999999974
No 45
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=52.77 E-value=1 Score=37.88 Aligned_cols=10 Identities=0% Similarity=0.208 Sum_probs=5.8
Q ss_pred ccc-ccccccc
Q 030403 54 NWS-HYRHFSS 63 (178)
Q Consensus 54 ~~~-~~r~fss 63 (178)
+|| --.||.-
T Consensus 208 I~P~al~yf~g 218 (264)
T 2zd7_A 208 IYPFCVKYYAE 218 (264)
T ss_dssp HHHHHHHHHHH
T ss_pred hccCHHHHhcc
Confidence 477 3457754
No 46
>1w5r_A Arylamine N-acetyltransferase; acyltransferase; 1.45A {Mycobacterium smegmatis} SCOP: d.3.1.5 PDB: 1w6f_A* 1gx3_A
Probab=52.46 E-value=12 Score=31.15 Aligned_cols=42 Identities=14% Similarity=0.144 Sum_probs=31.1
Q ss_pred HHHHhCcEEec---cc-ccCcccc--ccCCceEEEEeeCCeE--EEEeCC
Q 030403 112 EAAEIGYKVLG---PL-RKSDRVF--KKYEPAFAVVQIGSHQ--FKVSNG 153 (178)
Q Consensus 112 ea~~igykvvg---~~-~~~~~~~--k~~~~MYAIVeiGGKQ--YKV~eG 153 (178)
--.++||+|.. ++ ......+ .+...|.-+|.+.|++ |.|-.|
T Consensus 83 ~L~~LGF~V~~~~arV~~~~~~~~~~~~~~H~~l~V~idg~~~~ylvDVG 132 (278)
T 1w5r_A 83 VLEELGFEVERLSGRVVWMRADDAPLPAQTHNVLSVAVPGADGRYLVDVG 132 (278)
T ss_dssp HHHHHTCEEEEEEEEECTTCCTTCCCCCEEEEEEEEECSSCSCCEEECSC
T ss_pred HHHHcCCeEEEEEEEEeeCCCCCCCCCCCccEEEEEEECCeEEEEEEecC
Confidence 45789999864 44 3444455 4778899999999999 998654
No 47
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=51.54 E-value=12 Score=29.83 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.5
Q ss_pred EEEeeCCeEEEEeCCCEEEecc
Q 030403 139 AVVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 139 AIVeiGGKQYKV~eGD~I~VEr 160 (178)
+.+.++|+.|.|++||+|+++.
T Consensus 211 ~~~~i~~~~~~l~~GD~i~~~~ 232 (261)
T 1rc6_A 211 GVYNLDNNWIPVKKGDYIFMGA 232 (261)
T ss_dssp EEEESSSCEEEEETTCEEEECS
T ss_pred EEEEECCEEEEeCCCCEEEECC
Confidence 4678999999999999999874
No 48
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=51.41 E-value=7.8 Score=27.53 Aligned_cols=35 Identities=14% Similarity=0.199 Sum_probs=29.5
Q ss_pred eEEEEe-eCCeEEEEeCCCEEEecccCCCCCCCeEEecc
Q 030403 137 AFAVVQ-IGSHQFKVSNGDSIFTERLKFCEVNDKLSFER 174 (178)
Q Consensus 137 MYAIVe-iGGKQYKV~eGD~I~VErL~~aEvGdkI~Ldk 174 (178)
-.|||+ ..|..|.|.....|..++| ++|+.|-+++
T Consensus 31 ~~~iVkss~g~~~~V~v~~~Vd~~~L---kpG~rVaLn~ 66 (85)
T 3h43_A 31 RKVVVKSSTGPSFLVNVSHFVNPDDL---APGKRVCLNQ 66 (85)
T ss_dssp TEEEEEETTSSEEEEEBCTTSCGGGC---CTTCEEEECT
T ss_pred CEEEEEeCCCCeEEEEecCccCHHHC---CCCCEEEECC
Confidence 468998 7789999999998776665 7999999987
No 49
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=51.24 E-value=9.5 Score=25.15 Aligned_cols=21 Identities=5% Similarity=-0.035 Sum_probs=17.7
Q ss_pred EEeeC-CeEEEEeCCCEEEecc
Q 030403 140 VVQIG-SHQFKVSNGDSIFTER 160 (178)
Q Consensus 140 IVeiG-GKQYKV~eGD~I~VEr 160 (178)
.+.++ |+.|.+.+||.++++.
T Consensus 67 ~~~~~~~~~~~l~~Gd~~~ip~ 88 (110)
T 2q30_A 67 EFVGDGDAVIPAPRGAVLVAPI 88 (110)
T ss_dssp EEECGGGCEEEECTTEEEEEET
T ss_pred EEEeCCCEEEEECCCCEEEeCC
Confidence 35677 7999999999999875
No 50
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=51.15 E-value=3.2 Score=37.48 Aligned_cols=10 Identities=10% Similarity=0.062 Sum_probs=5.1
Q ss_pred ccccc-ccccc
Q 030403 54 NWSHY-RHFSS 63 (178)
Q Consensus 54 ~~~~~-r~fss 63 (178)
+||+. -||--
T Consensus 352 IiP~AV~yftG 362 (417)
T 2ayu_A 352 LIPRAVDWFTG 362 (417)
T ss_dssp TTTTHHHHHHS
T ss_pred ccccHHHHhcc
Confidence 47743 35543
No 51
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=51.11 E-value=14 Score=25.69 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=18.3
Q ss_pred EEe--eCCeEEEEeCCCEEEecc
Q 030403 140 VVQ--IGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 140 IVe--iGGKQYKV~eGD~I~VEr 160 (178)
.+. ++|+.|.+.+||.++++.
T Consensus 71 ~~~~~~~~~~~~l~~Gd~~~ip~ 93 (145)
T 3ht1_A 71 GLVLPDQGRTEEVGPGEAIFIPR 93 (145)
T ss_dssp EEEEGGGTEEEEECTTCEEEECT
T ss_pred EEEEeECCEEEEECCCCEEEECC
Confidence 356 899999999999999875
No 52
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=50.76 E-value=15 Score=27.99 Aligned_cols=21 Identities=14% Similarity=0.036 Sum_probs=18.9
Q ss_pred EEeeCCeEEEEeCCCEEEecc
Q 030403 140 VVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 140 IVeiGGKQYKV~eGD~I~VEr 160 (178)
.+.++|+.|.+.+||.|+|+.
T Consensus 85 ~~~v~g~~~~l~~GD~i~ip~ 105 (166)
T 3jzv_A 85 HAMVGRAVSAVAPYDLVTIPG 105 (166)
T ss_dssp EEEETTEEEEECTTCEEEECT
T ss_pred EEEECCEEEEeCCCCEEEECC
Confidence 378999999999999999875
No 53
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=49.67 E-value=13 Score=26.12 Aligned_cols=21 Identities=29% Similarity=0.224 Sum_probs=18.4
Q ss_pred EEeeCCeEEEEeCCCEEEecc
Q 030403 140 VVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 140 IVeiGGKQYKV~eGD~I~VEr 160 (178)
.+.++|+.|.+.+||+++++.
T Consensus 80 ~~~i~~~~~~l~~Gd~i~ip~ 100 (126)
T 1vj2_A 80 TVLKEQGEETVEEGFYIFVEP 100 (126)
T ss_dssp EEECSSCEEEEETTEEEEECT
T ss_pred EEEECCEEEEECCCCEEEECC
Confidence 467889999999999999875
No 54
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=49.00 E-value=17 Score=29.01 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=19.3
Q ss_pred EEEeeCCeEEEEeCCCEEEecc
Q 030403 139 AVVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 139 AIVeiGGKQYKV~eGD~I~VEr 160 (178)
+++.++|+-|.|++||+|++..
T Consensus 197 ~~~~~~~~~~~l~~GD~~~~~~ 218 (246)
T 1sfn_A 197 GLYKLEENYYPVTAGDIIWMGA 218 (246)
T ss_dssp EEEEETTEEEEEETTCEEEECT
T ss_pred EEEEECCEEEEcCCCCEEEECC
Confidence 4678999999999999999863
No 55
>2ija_A Arylamine N-acetyltransferase 1; arylamide acetylase 1, structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} PDB: 2pqt_A* 2pfr_A*
Probab=48.49 E-value=20 Score=29.93 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=30.1
Q ss_pred HHHHhCcEEec---ccccC-ccccc-cCCceEEEEeeCCeEEEEeCC
Q 030403 112 EAAEIGYKVLG---PLRKS-DRVFK-KYEPAFAVVQIGSHQFKVSNG 153 (178)
Q Consensus 112 ea~~igykvvg---~~~~~-~~~~k-~~~~MYAIVeiGGKQYKV~eG 153 (178)
--.++||+|.. ++... ...|. +...|.-+|.+.|++|.|-.|
T Consensus 83 ~L~~LGF~V~~~~~rV~~~~~~~~~~~~~H~~l~V~idg~~ylvDVG 129 (295)
T 2ija_A 83 ALTTIGFETTMLGGYVYSTPAKKYSTGMIHLLLQVTIDGRNYIVDAG 129 (295)
T ss_dssp HHHHHTCEEEEEEEEEEETTTTEECSSCCEEEEEEEETTEEEEECSC
T ss_pred HHHHcCCcEEEEEEEEeeCCCCCCCCCCCcEEEEEEECCceEEEeCC
Confidence 45789999864 44332 23444 477899999999999999654
No 56
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=48.18 E-value=18 Score=26.97 Aligned_cols=22 Identities=14% Similarity=0.004 Sum_probs=19.4
Q ss_pred EEeeCCeEEEEeCCCEEEeccc
Q 030403 140 VVQIGSHQFKVSNGDSIFTERL 161 (178)
Q Consensus 140 IVeiGGKQYKV~eGD~I~VErL 161 (178)
.+.++|+.|.+.+||.|+++.-
T Consensus 77 ~~~~~~~~~~l~~GD~i~ip~~ 98 (163)
T 3i7d_A 77 VLVDDQGEHPMVPGDCAAFPAG 98 (163)
T ss_dssp EEEETTEEEEECTTCEEEECTT
T ss_pred EEEECCEEEEeCCCCEEEECCC
Confidence 4678999999999999999864
No 57
>3oss_C Type 2 secretion system, GSPC; general secretory pathway, HR domain, lanthanide-B TAG, protein transport; 2.63A {Escherichia coli}
Probab=47.38 E-value=16 Score=25.34 Aligned_cols=33 Identities=18% Similarity=0.101 Sum_probs=25.9
Q ss_pred CcEEecccccCccccccCCceEEEEeeCCeEEEEeCCCEEE
Q 030403 117 GYKVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIF 157 (178)
Q Consensus 117 gykvvg~~~~~~~~~k~~~~MYAIVeiGGKQYKV~eGD~I~ 157 (178)
.-+.+|.+..+ .-.|||+.+|+|-.-..||.|-
T Consensus 8 ~l~L~Gvv~s~--------~s~AII~~~g~q~~Y~vGd~i~ 40 (68)
T 3oss_C 8 NVVLRGIAFGA--------RPGAVIEEGGKQQVYLQGERLD 40 (68)
T ss_dssp SCEEEEEEESS--------SCEEEEEETTEEEEECTTCBCS
T ss_pred eeEEEEEEeCC--------CcEEEEecCCcEeEEECCCEeC
Confidence 34667775422 6789999999999999999874
No 58
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=43.72 E-value=24 Score=26.22 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=18.3
Q ss_pred EEeeCC----eEEEEeCCCEEEecc
Q 030403 140 VVQIGS----HQFKVSNGDSIFTER 160 (178)
Q Consensus 140 IVeiGG----KQYKV~eGD~I~VEr 160 (178)
.+.++| +.|.+.+||.++++.
T Consensus 152 ~~~~~~~~~~~~~~l~~GD~~~~~~ 176 (198)
T 2bnm_A 152 HMKWGDKENPKEALLPTGASMFVEE 176 (198)
T ss_dssp EEEESCTTSCEEEEECTTCEEEECT
T ss_pred EEEECCcCCcccEEECCCCEEEeCC
Confidence 467889 999999999999875
No 59
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=43.51 E-value=21 Score=26.07 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=18.5
Q ss_pred EEEee-CCeEEEEeCCCEEEecc
Q 030403 139 AVVQI-GSHQFKVSNGDSIFTER 160 (178)
Q Consensus 139 AIVei-GGKQYKV~eGD~I~VEr 160 (178)
+.|.+ +|+.+.+.+||.+++..
T Consensus 79 ~~l~~~~g~~~~l~~GD~~~ip~ 101 (123)
T 3bcw_A 79 ARLVDPDGTVHAVKAGDAFIMPE 101 (123)
T ss_dssp EEEECTTCCEEEEETTCEEEECT
T ss_pred EEEEECCCeEEEECCCCEEEECC
Confidence 34666 89999999999999876
No 60
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=43.37 E-value=21 Score=23.75 Aligned_cols=22 Identities=9% Similarity=0.079 Sum_probs=18.3
Q ss_pred EEEeeCC--eEEEEeCCCEEEecc
Q 030403 139 AVVQIGS--HQFKVSNGDSIFTER 160 (178)
Q Consensus 139 AIVeiGG--KQYKV~eGD~I~VEr 160 (178)
+.+.+++ +.|.+.+||.|+++.
T Consensus 50 ~~~~~~~g~~~~~l~~Gd~~~~p~ 73 (97)
T 2fqp_A 50 LLLETPEGSVTSQLTRGVSYTRPE 73 (97)
T ss_dssp EEEEETTEEEEEEECTTCCEEECT
T ss_pred EEEEeCCCCEEEEEcCCCEEEeCC
Confidence 3567877 899999999999874
No 61
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=42.82 E-value=8.7 Score=32.90 Aligned_cols=39 Identities=8% Similarity=0.128 Sum_probs=31.2
Q ss_pred CceEEEEeeCCeEEEEeCCCEEEecccCCCCCCCeEEecccc
Q 030403 135 EPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLSFERPC 176 (178)
Q Consensus 135 ~~MYAIVeiGGKQYKV~eGD~I~VErL~~aEvGdkI~LdkVL 176 (178)
....|||+.+|..|.|..-..|..++| ++|+.|.||.=+
T Consensus 109 dd~~aiV~s~Gr~~~V~Vsp~Vd~e~L---kPG~rVaLNeSl 147 (251)
T 3m9b_A 109 DDDTVDVFTSGRKMRLTCSPNIDAASL---KKGQTVRLNEAL 147 (251)
T ss_dssp SSSCEEEECSSSCCEECBCTTSCTTTS---CSSCEEEECTTC
T ss_pred CCCEEEEEeCCceEEEEeCCCCCHHHC---CCCCEEEeCCcc
Confidence 356899999999999998887665555 689999887644
No 62
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=42.67 E-value=23 Score=27.87 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=19.5
Q ss_pred EEEeeCCeEEEEeCCCEEEecc
Q 030403 139 AVVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 139 AIVeiGGKQYKV~eGD~I~VEr 160 (178)
+.|.++|+.|.+.+||.|+++.
T Consensus 177 ~~~~i~~~~~~l~~Gd~i~ip~ 198 (243)
T 3h7j_A 177 YDMTVEGCTVEMKFGTAYFCEP 198 (243)
T ss_dssp EEEEETTEEEEECTTCEEEECT
T ss_pred EEEEECCEEEEECCCCEEEECC
Confidence 4578999999999999999875
No 63
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=42.66 E-value=20 Score=28.05 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.2
Q ss_pred EEEeeCCeEEEEeCCCEEEecc
Q 030403 139 AVVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 139 AIVeiGGKQYKV~eGD~I~VEr 160 (178)
+.+.++|+.|.+.+||.|+++.
T Consensus 184 ~~~~i~g~~~~l~~Gd~i~ip~ 205 (227)
T 3rns_A 184 GKYYVDGKPFIVKKGESAVLPA 205 (227)
T ss_dssp EEEEETTEEEEEETTEEEEECT
T ss_pred EEEEECCEEEEECCCCEEEECC
Confidence 4577899999999999999875
No 64
>1pyv_A ATP synthase beta chain, mitochondrial precursor; hydrolase; NMR {Nicotiana plumbaginifolia} SCOP: j.36.4.1
Probab=42.32 E-value=14 Score=24.96 Aligned_cols=16 Identities=50% Similarity=0.578 Sum_probs=12.4
Q ss_pred CchhhHHHHHHHhhhh
Q 030403 1 MAHRRCLHVLSRHAAA 16 (178)
Q Consensus 1 ma~rrcl~~ltr~~~~ 16 (178)
||+||-|..|.||...
T Consensus 1 masrrllasllrqsaq 16 (54)
T 1pyv_A 1 MASRRLLASLLRQSAQ 16 (54)
T ss_dssp -CCSHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHH
Confidence 9999999888887643
No 65
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=40.48 E-value=23 Score=25.82 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=18.0
Q ss_pred EEeeCCeE-EEEeCCCEEEecc
Q 030403 140 VVQIGSHQ-FKVSNGDSIFTER 160 (178)
Q Consensus 140 IVeiGGKQ-YKV~eGD~I~VEr 160 (178)
.+.++|+. |.+.+||+|+++.
T Consensus 80 ~~~~~~~~~~~l~~Gd~i~ip~ 101 (147)
T 2f4p_A 80 FYQERGKPARILKKGDVVEIPP 101 (147)
T ss_dssp EEEETTSCCEEEETTCEEEECT
T ss_pred EEEECCEEEEEECCCCEEEECC
Confidence 46788898 9999999999874
No 66
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=38.74 E-value=26 Score=25.50 Aligned_cols=21 Identities=10% Similarity=0.158 Sum_probs=17.9
Q ss_pred EEeeCC---------eEEEEeCCCEEEecc
Q 030403 140 VVQIGS---------HQFKVSNGDSIFTER 160 (178)
Q Consensus 140 IVeiGG---------KQYKV~eGD~I~VEr 160 (178)
.+.++| +.|.+.+||+++++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~Gd~i~ip~ 102 (163)
T 1lr5_A 73 TLLMGSSSLKYPGQPQEIPFFQNTTFSIPV 102 (163)
T ss_dssp EEEECCSSSSSCCSCEEEEECTTEEEEECT
T ss_pred EEEECCccccccCccEEEEeCCCCEEEECC
Confidence 356788 999999999999874
No 67
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=38.50 E-value=29 Score=27.69 Aligned_cols=22 Identities=9% Similarity=0.200 Sum_probs=18.6
Q ss_pred EEeeCCeEEEEeCCCEEEeccc
Q 030403 140 VVQIGSHQFKVSNGDSIFTERL 161 (178)
Q Consensus 140 IVeiGGKQYKV~eGD~I~VErL 161 (178)
.+.++|+.|.+++||+++++.-
T Consensus 251 ~~~i~~~~~~l~~GD~~~ip~~ 272 (337)
T 1y3t_A 251 TMWTDGQEIQLNPGDFLHVPAN 272 (337)
T ss_dssp EEEETTEEEEECTTCEEEECTT
T ss_pred EEEECCEEEEECCCCEEEECCC
Confidence 3578999999999999998753
No 68
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=37.23 E-value=23 Score=25.54 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=17.6
Q ss_pred EEeeCCeE------EEEeCCCEEEecc
Q 030403 140 VVQIGSHQ------FKVSNGDSIFTER 160 (178)
Q Consensus 140 IVeiGGKQ------YKV~eGD~I~VEr 160 (178)
.+.++|+. |.+.+||+|+++.
T Consensus 76 ~~~i~~~~~~~~~~~~l~~Gd~i~ip~ 102 (148)
T 2oa2_A 76 LVQMGHRQDNLHFQEEVFDDYAILIPA 102 (148)
T ss_dssp EEEEESBTTBCCEEEEEETTCEEEECT
T ss_pred EEEECCccccceeeEEECCCCEEEECC
Confidence 35678888 9999999999874
No 69
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=36.35 E-value=28 Score=27.61 Aligned_cols=21 Identities=14% Similarity=0.371 Sum_probs=18.5
Q ss_pred EEeeCCeEEEEeCCCEEEecc
Q 030403 140 VVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 140 IVeiGGKQYKV~eGD~I~VEr 160 (178)
.|.++|+.|.+.+||.++++.
T Consensus 93 ~~~~~~~~~~L~~Gd~~~~~~ 113 (261)
T 1rc6_A 93 TAKAEGKTFALSEGGYLYCPP 113 (261)
T ss_dssp EEEETTEEEEEETTEEEEECT
T ss_pred EEEECCEEEEECCCCEEEECC
Confidence 467899999999999999874
No 70
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=34.04 E-value=30 Score=26.99 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=18.2
Q ss_pred EEeeCCeEEEEeCCCEEEecc
Q 030403 140 VVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 140 IVeiGGKQYKV~eGD~I~VEr 160 (178)
-+.++|+.+.+.+||+|+++.
T Consensus 69 ~~~i~~~~~~l~~Gd~~~~p~ 89 (227)
T 3rns_A 69 EIFIENNKKTISNGDFLEITA 89 (227)
T ss_dssp EEEESSCEEEEETTEEEEECS
T ss_pred EEEECCEEEEECCCCEEEECC
Confidence 356899999999999999874
No 71
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=33.18 E-value=29 Score=28.35 Aligned_cols=21 Identities=10% Similarity=0.194 Sum_probs=18.7
Q ss_pred EEeeCCeEEEEeCCCEEEecc
Q 030403 140 VVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 140 IVeiGGKQYKV~eGD~I~VEr 160 (178)
.|.++|+.|.+++||.|+++.
T Consensus 102 ~v~v~g~~~~L~~GD~i~ip~ 122 (278)
T 1sq4_A 102 SLTLQGQVHAMQPGGYAFIPP 122 (278)
T ss_dssp EEEESSCEEEECTTEEEEECT
T ss_pred EEEECCEEEEECCCCEEEECC
Confidence 477899999999999999874
No 72
>1kn6_A Prohormone convertase 1; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Mus musculus} SCOP: d.58.3.3
Probab=33.18 E-value=32 Score=24.78 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhCcEEecccccCc
Q 030403 106 LEEKEAEAAEIGYKVLGPLRKSD 128 (178)
Q Consensus 106 ~ee~~~ea~~igykvvg~~~~~~ 128 (178)
+++-.+.|++.||.-+|++.+.+
T Consensus 23 ~~~A~~iA~k~GF~nlGqIg~l~ 45 (90)
T 1kn6_A 23 QEAASAIAEELGYDLLGQIGSLE 45 (90)
T ss_dssp HHHHHHHHHHHTCEECCCCSSSS
T ss_pred HHHHHHHHHHcCcEEeccCCCCC
Confidence 46678899999999999997654
No 73
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=33.02 E-value=39 Score=27.56 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.4
Q ss_pred EEEeeCCeEEEEeCCCEEEecc
Q 030403 139 AVVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 139 AIVeiGGKQYKV~eGD~I~VEr 160 (178)
+++.++|+-|.|++||+|++..
T Consensus 223 ~~~~~~~~~~~v~~GD~~~~~~ 244 (278)
T 1sq4_A 223 AVYRLNQDWVEVEAGDFMWLRA 244 (278)
T ss_dssp EEEEETTEEEEEETTCEEEEEE
T ss_pred EEEEECCEEEEeCCCCEEEECC
Confidence 4678999999999999999864
No 74
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=32.84 E-value=28 Score=27.65 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=18.6
Q ss_pred EEeeCCeEEEEeCCCEEEecc
Q 030403 140 VVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 140 IVeiGGKQYKV~eGD~I~VEr 160 (178)
.|.++|+.|.+.+||.++++.
T Consensus 80 ~~~~~~~~~~l~~Gd~~~~p~ 100 (246)
T 1sfn_A 80 DVAVGGETRTLREYDYVYLPA 100 (246)
T ss_dssp EEECSSCEEEECTTEEEEECT
T ss_pred EEEECCEEEEECCCCEEEECC
Confidence 567899999999999999874
No 75
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=32.16 E-value=30 Score=27.78 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=18.5
Q ss_pred EEeeCCeEEEEeCCCEEEecc
Q 030403 140 VVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 140 IVeiGGKQYKV~eGD~I~VEr 160 (178)
.|.++|+.|.+.+||.++++.
T Consensus 96 ~~~~~~~~~~L~~GD~~~~~~ 116 (274)
T 1sef_A 96 RVSDGQETHELEAGGYAYFTP 116 (274)
T ss_dssp EEECSSCEEEEETTEEEEECT
T ss_pred EEEECCEEEEECCCCEEEECC
Confidence 467899999999999999874
No 76
>3lnb_A N-acetyltransferase family protein; arylamine N-acetyltransferase, NAT, acetyltrans acyltransferase; HET: COA; 2.01A {Bacillus anthracis}
Probab=32.05 E-value=53 Score=28.08 Aligned_cols=42 Identities=10% Similarity=0.251 Sum_probs=29.7
Q ss_pred HHHHhCcEEec---ccccC-cccc-ccCCceEEEEeeCCeEEEEeCC
Q 030403 112 EAAEIGYKVLG---PLRKS-DRVF-KKYEPAFAVVQIGSHQFKVSNG 153 (178)
Q Consensus 112 ea~~igykvvg---~~~~~-~~~~-k~~~~MYAIVeiGGKQYKV~eG 153 (178)
--.++||+|.. ++... ...| .+...|--+|.+.|+.|.|-.|
T Consensus 109 ~L~~lGf~v~~~~arV~~~~~~~~~~~~~H~~l~V~~~g~~ylvDVG 155 (309)
T 3lnb_A 109 FLMDCGFQVYKVAGTVYDLYDNKWKPDDGHVIIILHHNKKDYVIDAG 155 (309)
T ss_dssp HHHHTTCEEEEEEEEEEETTTTEECSTTCEEEEEEEETTEEEEECSC
T ss_pred HHHHcCCeEEEEeEEEecCCCCCCCCCCccEEEEEEECCeEEEEecC
Confidence 34689999854 33322 2234 4557899999999999999876
No 77
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=31.62 E-value=44 Score=26.64 Aligned_cols=21 Identities=10% Similarity=0.205 Sum_probs=18.4
Q ss_pred EEeeCCeEEEEeCCCEEEecc
Q 030403 140 VVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 140 IVeiGGKQYKV~eGD~I~VEr 160 (178)
.+.++|+.|.+.+||+|+++.
T Consensus 79 ~~~~~~~~~~l~~Gd~~~~p~ 99 (337)
T 1y3t_A 79 ELTLDGERYLLISGDYANIPA 99 (337)
T ss_dssp EEEETTEEEEECTTCEEEECT
T ss_pred EEEECCEEEEECCCCEEEECC
Confidence 456899999999999999874
No 78
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.12 E-value=17 Score=24.15 Aligned_cols=26 Identities=38% Similarity=0.438 Sum_probs=20.3
Q ss_pred CCCCCCCCHHHHHHHHHHhCcEEeccc
Q 030403 98 PDLGREYTLEEKEAEAAEIGYKVLGPL 124 (178)
Q Consensus 98 ~~~~~~~~~ee~~~ea~~igykvvg~~ 124 (178)
....|.+|.||--+.-= -||||+.|=
T Consensus 16 ~~rnrpltDEeLD~~LP-~GY~il~pP 41 (47)
T 2fho_A 16 DERNRPLSDEELDAMFP-EGYKVLPPP 41 (47)
T ss_dssp CCCCCCSCTTHHHHHSC-TTEEECCCC
T ss_pred ccccCCCCHHHHHHhCC-CCCeecCCC
Confidence 45678899999777666 499999874
No 79
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=29.50 E-value=11 Score=29.13 Aligned_cols=10 Identities=20% Similarity=-0.001 Sum_probs=4.8
Q ss_pred HHHHHhhhhh
Q 030403 8 HVLSRHAAAL 17 (178)
Q Consensus 8 ~~ltr~~~~~ 17 (178)
+.|+.++.-+
T Consensus 55 ~~Lt~~A~~~ 64 (140)
T 2byk_A 55 RHLAGAAYTE 64 (140)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455555444
No 80
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=28.47 E-value=36 Score=25.84 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=14.5
Q ss_pred CeEEEEeCCCEEEecc
Q 030403 145 SHQFKVSNGDSIFTER 160 (178)
Q Consensus 145 GKQYKV~eGD~I~VEr 160 (178)
++.|.|++||+++++.
T Consensus 82 ~~~~~l~~GDv~~~P~ 97 (178)
T 1dgw_A 82 RDTYKLDQGDAIKIQA 97 (178)
T ss_dssp EEEEEEETTEEEEECT
T ss_pred cEEEEECCCCEEEECC
Confidence 7889999999999974
No 81
>2kmt_A CCDB; toxin; NMR {Vibrio fischeri} PDB: 3jrz_A 3jsc_A 3ku8_C* 3kua_C*
Probab=28.32 E-value=46 Score=24.31 Aligned_cols=46 Identities=11% Similarity=0.100 Sum_probs=37.5
Q ss_pred HhCcEEecccccCccccc-cCCceEEEEeeCCeEEEEeCCCEEEecc
Q 030403 115 EIGYKVLGPLRKSDRVFK-KYEPAFAVVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 115 ~igykvvg~~~~~~~~~k-~~~~MYAIVeiGGKQYKV~eGD~I~VEr 160 (178)
.+..+||=||......-+ +..+..-+|+++|++|.+-.-+.--|++
T Consensus 31 ~L~trvVvPL~~~~~~~~~~~~~L~P~~~i~g~~~~l~t~~iaaV~~ 77 (105)
T 2kmt_A 31 NLNTRLVIPLTPIELLDKKAPSHLCPTIHIDEGDFIMLTQQMTSVPV 77 (105)
T ss_dssp SSSCCEECCEECTTTTCSCCCSSSSCEEEETTEEEEECTTTCEECCG
T ss_pred cCCcEEEEECCchhhccccCCCCeeeEEEECCEEEEEEcHHhcCCCH
Confidence 456789999998864333 3678899999999999999999888875
No 82
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=27.88 E-value=13 Score=32.38 Aligned_cols=7 Identities=0% Similarity=0.311 Sum_probs=1.3
Q ss_pred cccCCCC
Q 030403 61 FSSNKND 67 (178)
Q Consensus 61 fss~~~~ 67 (178)
|.+..-+
T Consensus 259 l~~~~~~ 265 (293)
T 3bbo_G 259 YGVDTLE 265 (293)
T ss_dssp SCC----
T ss_pred hcccccc
Confidence 3444333
No 83
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=27.21 E-value=33 Score=26.29 Aligned_cols=21 Identities=5% Similarity=0.240 Sum_probs=16.7
Q ss_pred EEeeCCeE-----EEEeCCCEEEecc
Q 030403 140 VVQIGSHQ-----FKVSNGDSIFTER 160 (178)
Q Consensus 140 IVeiGGKQ-----YKV~eGD~I~VEr 160 (178)
.+.++++. |.+++||+|+++.
T Consensus 108 ~~~i~~~~g~~~~~~l~~GD~v~ip~ 133 (190)
T 1x82_A 108 GMLLQTPEGDAKWISMEPGTVVYVPP 133 (190)
T ss_dssp EEEEECTTCCEEEEEECTTCEEEECT
T ss_pred EEEEcCcCCcEEEEEECCCcEEEECC
Confidence 45667777 9999999999874
No 84
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=26.82 E-value=53 Score=29.04 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=18.0
Q ss_pred EEeeCCeEEEEeCCCEEEecc
Q 030403 140 VVQIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 140 IVeiGGKQYKV~eGD~I~VEr 160 (178)
.+.++|+.|.+++||+|+|..
T Consensus 326 ~~~V~ge~~~~~~GD~~~iP~ 346 (394)
T 3bu7_A 326 YSIVGGKRFDWSEHDIFCVPA 346 (394)
T ss_dssp EEEETTEEEEECTTCEEEECT
T ss_pred EEEECCEEEEEeCCCEEEECC
Confidence 346789999999999999875
No 85
>3ay5_A Cyclin-D1-binding protein 1; dominant-negative helix-loop-helix transcriptional regulator cycle; 2.50A {Homo sapiens}
Probab=26.44 E-value=26 Score=30.44 Aligned_cols=10 Identities=10% Similarity=0.242 Sum_probs=6.3
Q ss_pred CCCCHHHHHH
Q 030403 102 REYTLEEKEA 111 (178)
Q Consensus 102 ~~~~~ee~~~ 111 (178)
..+|+||+..
T Consensus 231 ~~~s~ee~~l 240 (360)
T 3ay5_A 231 LYWSEDDQEL 240 (360)
T ss_dssp TSCCHHHHHH
T ss_pred cccCHHHHHH
Confidence 3478777654
No 86
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=25.14 E-value=50 Score=27.78 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.1
Q ss_pred EEEeeCC-eEEEEeCCCEEEecc
Q 030403 139 AVVQIGS-HQFKVSNGDSIFTER 160 (178)
Q Consensus 139 AIVeiGG-KQYKV~eGD~I~VEr 160 (178)
+.|.++| +.|.+.+||+|+|+.
T Consensus 283 ~~i~i~g~~~~~l~~Gd~~~iPa 305 (350)
T 1juh_A 283 VVVQIGDYAATELGSGDVAFIPG 305 (350)
T ss_dssp EEEEETTSCCEEECTTCEEEECT
T ss_pred EEEEECCeEEEEeCCCCEEEECC
Confidence 3468999 899999999999875
No 87
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=24.52 E-value=68 Score=27.22 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=18.1
Q ss_pred EeeCCeEEEEeCCCEEEeccc
Q 030403 141 VQIGSHQFKVSNGDSIFTERL 161 (178)
Q Consensus 141 VeiGGKQYKV~eGD~I~VErL 161 (178)
+.++|+.|.+++||+++|..-
T Consensus 301 ~~v~~~~~~~~~GD~~~vP~~ 321 (354)
T 2d40_A 301 VIIGNETFSFSAKDIFVVPTW 321 (354)
T ss_dssp EEETTEEEEEETTCEEEECTT
T ss_pred EEECCEEEEEcCCCEEEECCC
Confidence 357899999999999999863
No 88
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=24.39 E-value=72 Score=22.36 Aligned_cols=24 Identities=17% Similarity=0.092 Sum_probs=12.7
Q ss_pred EEeCCCEEEecccCCCCCCCeEEe
Q 030403 149 KVSNGDSIFTERLKFCEVNDKLSF 172 (178)
Q Consensus 149 KV~eGD~I~VErL~~aEvGdkI~L 172 (178)
.+..||+|.|++......|+.+.+
T Consensus 32 ~i~~Gd~v~Vd~~~~~~~Gdivv~ 55 (109)
T 1kca_A 32 SFPDGMLILVDPEQAVEPGDFCIA 55 (109)
T ss_dssp CCCTTCEEEEETTSCCCTTCEEEE
T ss_pred eeCCCCEEEEecCCcCCCCCEEEE
Confidence 455666666665443455554443
No 89
>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A
Probab=23.97 E-value=49 Score=26.46 Aligned_cols=37 Identities=11% Similarity=0.150 Sum_probs=30.6
Q ss_pred EEEEeeCCeEEEEeCCCEEEecccCCCCCCCeEEeccccc
Q 030403 138 FAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLSFERPCW 177 (178)
Q Consensus 138 YAIVeiGGKQYKV~eGD~I~VErL~~aEvGdkI~LdkVLL 177 (178)
.|=|.++|++++|..-=.|.+..| .+|+.|.||+-|.
T Consensus 21 tadV~t~GRkMrv~vsP~vd~~~L---~~Gq~V~LNEal~ 57 (153)
T 2wfw_A 21 TVDVFTSGRKMRLTCSPNIDTDTL---ALGQTVRLNEALT 57 (153)
T ss_dssp CEEEEETTEEEEECBCTTCCGGGC---CTTCEEEECTTCC
T ss_pred eEEEEECCcEEEEEeCCCCCHHHC---CCCCEEEECCceE
Confidence 588999999999998887777766 5899998887654
No 90
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=23.40 E-value=92 Score=26.19 Aligned_cols=32 Identities=3% Similarity=0.016 Sum_probs=24.9
Q ss_pred eeCCeEEEE---eCCCEEEecccCCCCCCCeEEec
Q 030403 142 QIGSHQFKV---SNGDSIFTERLKFCEVNDKLSFE 173 (178)
Q Consensus 142 eiGGKQYKV---~eGD~I~VErL~~aEvGdkI~Ld 173 (178)
-++|+++.| -..|.+.++.+..+++||.|.|-
T Consensus 305 ~v~g~~~~ivG~vcmD~~~vd~~~~~~~GD~v~l~ 339 (391)
T 2vd8_A 305 LVNGXRVPIVGRVTMDQFMIHLPCEVPLGTXVTLI 339 (391)
T ss_dssp EETTEEEEEESCCCSSCEEEEESSCCCTTCEEEEE
T ss_pred EECCeecceecceecceeEeecCCCCCCCCEEEEE
Confidence 346888887 46788998887668899999863
No 91
>2hd3_A Ethanolamine utilization protein EUTN; beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Escherichia coli} SCOP: b.40.15.1 PDB: 2z9h_A
Probab=22.98 E-value=73 Score=23.74 Aligned_cols=53 Identities=9% Similarity=0.034 Sum_probs=36.2
Q ss_pred EEecccccCccccccCCceEEEEeeCCeEEEEeCCCEEEecccCCCCCCCeEEe
Q 030403 119 KVLGPLRKSDRVFKKYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCEVNDKLSF 172 (178)
Q Consensus 119 kvvg~~~~~~~~~k~~~~MYAIVeiGGKQYKV~eGD~I~VErL~~aEvGdkI~L 172 (178)
||+|.+....+.-.....-+=||+.-+.+-+-.....+-++.+. |-+|+.|.+
T Consensus 5 kViG~VvaT~K~~~L~G~kLlvVq~~d~~~~~~g~~~VAvD~VG-AG~Ge~Vlv 57 (103)
T 2hd3_A 5 VVTGQIVCTVRHHGLAHDKLLMVEMIDPQGNPDGQCAVAIDNIG-AGTGEWVLL 57 (103)
T ss_dssp EEEEEEECSSBCGGGTTCEEEEEEEECTTSCEEEEEEEEEESSC-CCTTCEEEE
T ss_pred EEEEEEEEeeecCCCCCcEEEEEEEeccCCCcCCCEEEEEECCC-CCCCCEEEE
Confidence 89999988876666666666788733222222334467799995 999999865
No 92
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=22.86 E-value=21 Score=26.53 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=19.7
Q ss_pred CceEEEEeeCCeEE------EEeCCCEEEecccC
Q 030403 135 EPAFAVVQIGSHQF------KVSNGDSIFTERLK 162 (178)
Q Consensus 135 ~~MYAIVeiGGKQY------KV~eGD~I~VErL~ 162 (178)
..|-...+++.+-| ||+.||+|+|++-.
T Consensus 42 ~d~ek~l~lg~~i~e~L~kekV~~GDVI~Id~~s 75 (95)
T 2cqa_A 42 TEMETIYDLGTKMIESLTKDKVQAGDVITIDKAT 75 (95)
T ss_dssp SSSEEEEEECSHHHHHHHHTTCCTTSEEEEETTT
T ss_pred cCCcEEEeCCHHHHHHHHHcCceeCCEEEEEccC
Confidence 34555566666533 89999999998754
No 93
>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A
Probab=22.06 E-value=46 Score=26.21 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=14.5
Q ss_pred eCCeEEE--EeCCCEEEecc
Q 030403 143 IGSHQFK--VSNGDSIFTER 160 (178)
Q Consensus 143 iGGKQYK--V~eGD~I~VEr 160 (178)
.+|+.|. |++||+|.|+.
T Consensus 117 ~~d~~~~~~l~~GDli~IP~ 136 (179)
T 1zrr_A 117 IGDEVFQVLCEKNDLISVPA 136 (179)
T ss_dssp CSSCEEEEECCCSCEEEECT
T ss_pred eCCEEEEEEECCCCEEEECC
Confidence 4788755 89999999875
No 94
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=21.55 E-value=25 Score=22.57 Aligned_cols=22 Identities=45% Similarity=0.567 Sum_probs=16.4
Q ss_pred CCCCCCCHHHHHHHHHHhCcEEe
Q 030403 99 DLGREYTLEEKEAEAAEIGYKVL 121 (178)
Q Consensus 99 ~~~~~~~~ee~~~ea~~igykvv 121 (178)
..+|++|.||--+.--. ||||+
T Consensus 18 ~RNrpltDEeLD~mLP~-GYkIl 39 (39)
T 3lqv_P 18 ERNRPLSDEELDAMFPE-GYKVL 39 (39)
T ss_dssp HTTCCCCHHHHHHTCCS-SEEEC
T ss_pred hhcCCCCHHHHHHhCCC-CcccC
Confidence 46788999987665553 99985
No 95
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=20.74 E-value=50 Score=28.04 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=17.1
Q ss_pred eeCCeEEEEeCCCEEEecc
Q 030403 142 QIGSHQFKVSNGDSIFTER 160 (178)
Q Consensus 142 eiGGKQYKV~eGD~I~VEr 160 (178)
.++|+.|.+++||+|+|+.
T Consensus 135 ~v~g~~~~l~~GD~~~iP~ 153 (354)
T 2d40_A 135 AVDGERTPMNEGDFILTPQ 153 (354)
T ss_dssp EETTEEEECCTTCEEEECT
T ss_pred EECCEEEEEcCCCEEEECC
Confidence 6799999999999999874
No 96
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=20.29 E-value=79 Score=24.76 Aligned_cols=21 Identities=14% Similarity=0.290 Sum_probs=17.4
Q ss_pred EEeeCCeEEEEeCCCEEE-ecc
Q 030403 140 VVQIGSHQFKVSNGDSIF-TER 160 (178)
Q Consensus 140 IVeiGGKQYKV~eGD~I~-VEr 160 (178)
.+.++|+.+.+.+||.|+ ++.
T Consensus 66 ~~~~~~~~~~l~~Gd~i~~ip~ 87 (243)
T 3h7j_A 66 MMTVGDVTRKMTALESAYIAPP 87 (243)
T ss_dssp EEEETTEEEEEETTTCEEEECT
T ss_pred EEEECCEEEEECCCCEEEEcCC
Confidence 467899999999999886 663
No 97
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=20.29 E-value=75 Score=26.92 Aligned_cols=25 Identities=24% Similarity=0.109 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHhCcEEecccccC
Q 030403 103 EYTLEEKEAEAAEIGYKVLGPLRKS 127 (178)
Q Consensus 103 ~~~~ee~~~ea~~igykvvg~~~~~ 127 (178)
..+.+|-++.|.+.||.|||.+...
T Consensus 10 ~~~~~e~~~l~~~~~~~~~~~~~~~ 34 (364)
T 2qtf_A 10 KEFEEEAIALVEGANYKVTSIYKLP 34 (364)
T ss_dssp TTTHHHHHHHHHHTTEEEEEEECCC
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEEc
Confidence 4578888999999999999988765
No 98
>5csm_A Chorismate mutase; chorismate pyruvatemutase, allosteric protein, complex (ISOM peptide), transition state analog; HET: TRP; 2.00A {Saccharomyces cerevisiae} SCOP: a.130.1.2 PDB: 3csm_A* 2csm_A* 4csm_A* 1csm_A*
Probab=20.22 E-value=36 Score=29.36 Aligned_cols=10 Identities=50% Similarity=0.893 Sum_probs=8.5
Q ss_pred hHHHHHHHhh
Q 030403 5 RCLHVLSRHA 14 (178)
Q Consensus 5 rcl~~ltr~~ 14 (178)
-|||+||||+
T Consensus 149 ~cLQALSRRI 158 (256)
T 5csm_A 149 ECLQSLSRRI 158 (256)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5999999986
No 99
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=20.12 E-value=86 Score=25.58 Aligned_cols=17 Identities=12% Similarity=0.284 Sum_probs=15.0
Q ss_pred CCe--EEEEeCCCEEEecc
Q 030403 144 GSH--QFKVSNGDSIFTER 160 (178)
Q Consensus 144 GGK--QYKV~eGD~I~VEr 160 (178)
+|+ .|.+++||+++++.
T Consensus 274 ~g~~~~~~l~~GD~~~ip~ 292 (361)
T 2vqa_A 274 EGKASVSRLQQGDVGYVPK 292 (361)
T ss_dssp TTCEEEEEECTTCEEEECT
T ss_pred CCcEEEEEECCCCEEEECC
Confidence 787 89999999999874
No 100
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=20.09 E-value=53 Score=27.55 Aligned_cols=20 Identities=10% Similarity=0.041 Sum_probs=16.9
Q ss_pred EEeeC-CeEEEEeCCCEEEec
Q 030403 140 VVQIG-SHQFKVSNGDSIFTE 159 (178)
Q Consensus 140 IVeiG-GKQYKV~eGD~I~VE 159 (178)
.+.++ |+.|.+++||.+++.
T Consensus 102 ~l~l~~g~~~~L~~Gds~y~p 122 (266)
T 4e2q_A 102 TLTNTSSSSKKLTVDSYAYLP 122 (266)
T ss_dssp EEEC--CCCEEECTTEEEEEC
T ss_pred EEEECCCcEEEEcCCCEEEEC
Confidence 46778 999999999999986
Done!