Query 030404
Match_columns 178
No_of_seqs 162 out of 435
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 21:29:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030404.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030404hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wff_A Riken cDNA 2810002D23 p 100.0 2E-30 7E-35 190.4 -0.2 61 113-173 22-83 (85)
2 1wfh_A Zinc finger (AN1-like) 99.9 2E-27 7E-32 166.3 -0.9 53 112-164 11-63 (64)
3 1wg2_A Zinc finger (AN1-like) 99.9 1.5E-26 5.2E-31 161.9 0.4 51 113-163 12-62 (64)
4 1wfl_A Zinc finger protein 216 99.9 4.4E-25 1.5E-29 158.3 3.9 51 112-162 21-71 (74)
5 1wfp_A Zinc finger (AN1-like) 99.9 1.2E-25 4.1E-30 161.2 0.4 52 112-163 21-72 (74)
6 1x4w_A Hypothetical protein FL 99.9 8.8E-26 3E-30 159.3 -2.4 52 112-163 11-65 (67)
7 2kzy_A ZNF216-A20, zfand5 prot 99.7 2.9E-18 1E-22 119.2 4.8 44 1-51 3-46 (62)
8 2c7n_A Rabex-5, GEF 1, RAB gua 99.6 4.2E-17 1.4E-21 116.6 2.1 31 18-48 16-46 (74)
9 3oj3_I Tumor necrosis factor a 99.5 2E-15 6.8E-20 100.2 2.3 28 19-46 19-47 (49)
10 1wfe_A Riken cDNA 2310008M20 p 99.3 2.1E-13 7.2E-18 100.0 0.8 58 113-178 22-82 (86)
11 1x4v_A Hypothetical protein LO 99.3 7.4E-13 2.5E-17 92.2 1.7 40 113-153 9-51 (63)
12 1wys_A Riken cDNA 2310008M20 p 99.2 1.5E-12 5.3E-17 93.3 1.3 42 115-157 13-57 (75)
13 2eqe_A Tumor necrosis factor, 97.7 1.8E-05 6.1E-10 51.9 2.4 28 19-46 16-44 (48)
14 1vfy_A Phosphatidylinositol-3- 94.4 0.019 6.4E-07 39.6 2.2 27 117-143 12-41 (73)
15 2yw8_A RUN and FYVE domain-con 93.8 0.029 1E-06 39.5 2.2 28 116-143 19-49 (82)
16 1wfk_A Zinc finger, FYVE domai 93.5 0.036 1.2E-06 39.8 2.2 29 115-143 8-39 (88)
17 1joc_A EEA1, early endosomal a 93.5 0.032 1.1E-06 42.3 2.1 28 116-143 69-99 (125)
18 1x4u_A Zinc finger, FYVE domai 93.4 0.042 1.5E-06 38.7 2.5 28 116-143 14-44 (84)
19 1z2q_A LM5-1; membrane protein 93.2 0.041 1.4E-06 38.9 2.2 28 116-143 21-51 (84)
20 1dvp_A HRS, hepatocyte growth 92.5 0.05 1.7E-06 44.2 2.0 28 116-143 161-191 (220)
21 3t7l_A Zinc finger FYVE domain 92.0 0.071 2.4E-06 38.2 2.1 28 116-143 20-50 (90)
22 3zyq_A Hepatocyte growth facto 91.3 0.09 3.1E-06 43.2 2.3 28 116-143 164-194 (226)
23 1y02_A CARP2, FYVE-ring finger 90.7 0.093 3.2E-06 40.0 1.7 41 116-156 19-65 (120)
24 2vrw_B P95VAV, VAV1, proto-onc 84.0 0.44 1.5E-05 41.1 2.1 41 115-156 356-400 (406)
25 4b6d_A RAC GTPase-activating p 82.1 0.45 1.5E-05 31.9 1.1 24 115-138 18-44 (61)
26 3mpx_A FYVE, rhogef and PH dom 81.2 0.3 1E-05 42.2 0.0 28 116-143 375-405 (434)
27 3c5k_A HD6, histone deacetylas 76.8 1 3.4E-05 33.5 1.7 30 116-149 24-54 (109)
28 2eqf_A Tumor necrosis factor, 75.1 1.3 4.5E-05 28.4 1.6 26 20-45 11-37 (46)
29 2eqg_A Tumor necrosis factor, 70.4 2.8 9.5E-05 27.2 2.3 28 19-46 12-40 (49)
30 2gmg_A Hypothetical protein PF 65.5 2.8 9.6E-05 31.4 1.9 26 125-152 62-88 (105)
31 1kbe_A Kinase suppressor of RA 64.2 2.5 8.5E-05 27.2 1.2 22 117-139 15-37 (49)
32 2enz_A NPKC-theta, protein kin 63.3 8.4 0.00029 25.3 3.8 25 115-139 22-50 (65)
33 1r79_A Diacylglycerol kinase, 63.3 3.4 0.00011 29.4 1.9 23 116-138 38-65 (84)
34 1ptq_A Protein kinase C delta 63.0 3.8 0.00013 25.2 1.9 24 115-138 10-37 (50)
35 2fnf_X Putative RAS effector N 59.3 4.5 0.00015 27.6 1.9 25 114-138 33-58 (72)
36 1wd2_A Ariadne-1 protein homol 58.3 4.6 0.00016 26.7 1.7 30 115-144 5-41 (60)
37 3ky9_A Proto-oncogene VAV; cal 57.9 4.5 0.00015 36.8 2.2 39 115-154 528-570 (587)
38 1faq_A RAF-1; transferase, ser 57.7 3.6 0.00012 25.6 1.1 24 115-139 13-37 (52)
39 2yuu_A NPKC-delta, protein kin 57.1 5.1 0.00018 27.6 1.9 25 115-139 27-55 (83)
40 1ef4_A Subunit N, DNA-directed 56.3 3.3 0.00011 27.7 0.7 13 116-128 3-15 (55)
41 1rfh_A RAS association (ralgds 56.3 4 0.00014 26.6 1.1 25 114-138 20-45 (59)
42 1z60_A TFIIH basal transcripti 56.0 3.5 0.00012 27.7 0.8 25 117-141 16-42 (59)
43 1twf_J DNA-directed RNA polyme 54.5 4.2 0.00014 28.4 1.1 14 115-128 3-16 (70)
44 3uej_A NPKC-delta, protein kin 52.9 6.9 0.00024 25.6 1.9 24 115-138 19-46 (65)
45 4ayb_N DNA-directed RNA polyme 48.2 5.3 0.00018 27.6 0.7 13 116-128 4-16 (66)
46 2co8_A NEDD9 interacting prote 48.0 13 0.00043 25.0 2.7 29 117-145 43-73 (82)
47 2eli_A Protein kinase C alpha 47.0 14 0.00048 25.6 2.8 43 115-157 27-73 (85)
48 3h0g_L DNA-directed RNA polyme 45.5 13 0.00044 25.3 2.4 26 114-139 19-48 (63)
49 2lce_A B-cell lymphoma 6 prote 45.2 11 0.00037 23.7 1.9 27 115-141 16-57 (74)
50 1y8f_A UNC-13 homolog A, MUNC1 45.2 11 0.00036 24.9 1.9 24 115-138 23-50 (66)
51 2yqq_A Zinc finger HIT domain- 43.1 11 0.00036 25.1 1.6 24 116-142 12-36 (56)
52 4gzn_C ZFP-57, zinc finger pro 42.9 7.1 0.00024 25.1 0.7 27 115-141 3-44 (60)
53 3f6q_B LIM and senescent cell 42.5 7.5 0.00026 24.7 0.8 27 117-143 40-66 (72)
54 2enn_A NPKC-theta, protein kin 42.1 9.2 0.00032 26.0 1.2 25 115-139 33-61 (77)
55 4gne_A Histone-lysine N-methyl 41.4 11 0.00039 27.7 1.7 27 117-146 59-86 (107)
56 3j21_g 50S ribosomal protein L 39.8 9 0.00031 25.0 0.8 25 114-138 12-37 (51)
57 2uzg_A Ubiquitin carboxyl-term 39.7 18 0.0006 25.9 2.5 32 115-149 24-58 (97)
58 1x68_A FHL5 protein; four-and- 39.7 16 0.00054 23.9 2.1 29 117-145 36-64 (76)
59 2row_A RHO-associated protein 38.3 9 0.00031 27.2 0.7 41 115-155 34-83 (84)
60 1vd4_A Transcription initiatio 38.3 11 0.00039 23.3 1.1 26 115-140 13-50 (62)
61 2d8x_A Protein pinch; LIM doma 37.7 10 0.00036 24.3 0.9 27 117-143 32-58 (70)
62 1bbo_A Human enhancer-binding 36.9 18 0.00061 21.1 1.8 11 130-140 29-40 (57)
63 2kwq_A Protein MCM10 homolog; 35.5 13 0.00046 26.9 1.3 19 131-149 49-67 (92)
64 1x64_A Alpha-actinin-2 associa 33.3 13 0.00044 25.2 0.8 10 117-126 26-35 (89)
65 2elq_A Zinc finger protein 406 32.7 17 0.00059 19.2 1.2 11 130-140 9-20 (36)
66 1nyp_A Pinch protein; LIM doma 32.6 14 0.00048 23.4 0.9 27 117-143 32-58 (66)
67 2ayj_A 50S ribosomal protein L 32.3 12 0.00042 25.0 0.5 23 115-137 18-41 (56)
68 1l1o_C Replication protein A 7 32.1 13 0.00044 29.2 0.7 30 116-145 43-79 (181)
69 3cc2_Z 50S ribosomal protein L 31.9 13 0.00044 28.2 0.7 31 113-143 57-92 (116)
70 3uk3_C Zinc finger protein 217 31.8 17 0.00059 21.2 1.2 11 116-126 4-14 (57)
71 2ysj_A Tripartite motif-contai 31.6 18 0.00061 22.6 1.2 25 116-141 20-44 (63)
72 1e4u_A Transcriptional repress 31.6 16 0.00054 24.8 1.0 26 116-141 11-39 (78)
73 1x61_A Thyroid receptor intera 31.5 15 0.00051 23.6 0.9 27 117-143 34-60 (72)
74 2adr_A ADR1; transcription reg 31.0 19 0.00064 21.4 1.2 11 130-140 30-41 (60)
75 1g47_A Pinch protein; LIM doma 30.9 15 0.0005 23.9 0.7 25 118-142 41-65 (77)
76 1x4l_A Skeletal muscle LIM-pro 30.8 16 0.00053 23.5 0.9 27 117-143 36-62 (72)
77 1znf_A 31ST zinc finger from X 30.4 14 0.00048 17.9 0.5 11 131-141 2-13 (27)
78 2gqj_A Zinc finger protein KIA 30.4 14 0.00048 24.8 0.6 13 115-127 23-35 (98)
79 2ctd_A Zinc finger protein 512 29.6 19 0.00067 24.5 1.3 12 115-126 33-44 (96)
80 1x4k_A Skeletal muscle LIM-pro 29.3 17 0.00059 23.2 0.9 27 117-143 34-60 (72)
81 1yop_A KTI11P; zinc finger, me 29.3 14 0.00047 26.3 0.4 14 129-142 22-35 (83)
82 2kvf_A Zinc finger and BTB dom 29.1 16 0.00055 17.9 0.6 11 131-141 4-15 (28)
83 2zet_C Melanophilin; complex, 29.1 23 0.00078 27.5 1.7 30 115-144 67-100 (153)
84 2ehe_A Four and A half LIM dom 29.0 30 0.001 22.7 2.1 28 117-144 44-71 (82)
85 1x4s_A Protein FON, zinc finge 29.0 16 0.00055 24.6 0.7 40 116-155 11-52 (59)
86 2kvh_A Zinc finger and BTB dom 28.8 16 0.00055 17.9 0.5 10 131-140 4-14 (27)
87 1ard_A Yeast transcription fac 28.7 15 0.0005 18.0 0.4 10 131-140 3-13 (29)
88 1x6e_A Zinc finger protein 24; 28.7 17 0.00059 22.6 0.8 26 115-140 13-53 (72)
89 2lvu_A Zinc finger and BTB dom 34.5 12 0.00041 18.2 0.0 12 131-142 3-15 (26)
90 2m0d_A Zinc finger and BTB dom 27.9 16 0.00055 17.9 0.4 10 131-140 4-14 (30)
91 1ffk_W Ribosomal protein L37AE 27.9 21 0.0007 24.9 1.1 30 113-142 24-58 (73)
92 2kvg_A Zinc finger and BTB dom 27.5 16 0.00056 18.1 0.4 10 131-140 4-14 (27)
93 2m0f_A Zinc finger and BTB dom 27.3 16 0.00056 17.8 0.4 10 131-140 3-13 (29)
94 2jr7_A DPH3 homolog; DESR1, CS 27.2 16 0.00053 26.4 0.4 12 129-140 22-33 (89)
95 2db6_A SH3 and cysteine rich d 27.1 20 0.00069 24.1 0.9 25 115-139 27-55 (74)
96 1wyh_A SLIM 2, skeletal muscle 27.0 20 0.00068 22.9 0.9 27 117-143 34-60 (72)
97 1x62_A C-terminal LIM domain p 27.0 11 0.00039 24.9 -0.4 25 118-142 43-67 (79)
98 1zbd_B Rabphilin-3A; G protein 26.9 29 0.001 26.3 1.9 31 114-144 53-87 (134)
99 1a7i_A QCRP2 (LIM1); LIM domai 26.9 20 0.00067 23.7 0.8 25 118-142 36-60 (81)
100 1e0f_I Haemadin, factor IIA; c 26.8 36 0.0012 22.2 2.1 30 127-156 13-42 (57)
101 1klr_A Zinc finger Y-chromosom 26.6 16 0.00056 17.9 0.3 10 131-140 3-13 (30)
102 2ysl_A Tripartite motif-contai 26.4 22 0.00077 22.5 1.1 26 116-142 20-45 (73)
103 1vq8_Z 50S ribosomal protein L 26.4 19 0.00066 25.4 0.7 34 113-146 24-62 (83)
104 2m0e_A Zinc finger and BTB dom 26.1 17 0.0006 17.6 0.4 11 131-141 3-14 (29)
105 2cu8_A Cysteine-rich protein 2 26.1 29 0.001 22.5 1.6 25 117-141 37-61 (76)
106 2elx_A Zinc finger protein 406 26.0 23 0.00079 18.3 0.9 11 130-140 7-18 (35)
107 1paa_A Yeast transcription fac 26.0 17 0.00058 18.0 0.3 11 131-141 3-14 (30)
108 1jm7_B BARD1, BRCA1-associated 25.9 30 0.001 24.5 1.7 37 115-153 21-60 (117)
109 2elo_A Zinc finger protein 406 25.9 24 0.00082 18.6 1.0 11 130-140 9-20 (37)
110 2csz_A Synaptotagmin-like prot 25.7 31 0.0011 24.2 1.7 31 115-145 24-58 (76)
111 2dar_A PDZ and LIM domain prot 25.6 22 0.00075 24.0 0.9 11 116-126 25-35 (90)
112 1x63_A Skeletal muscle LIM-pro 25.3 22 0.00076 23.3 0.9 27 117-143 44-70 (82)
113 2d8z_A Four and A half LIM dom 25.1 22 0.00076 22.6 0.8 26 117-142 32-57 (70)
114 2cot_A Zinc finger protein 435 25.1 31 0.0011 21.6 1.6 27 115-141 17-58 (77)
115 1p7a_A BF3, BKLF, kruppel-like 25.1 26 0.00088 18.5 1.0 9 131-139 12-21 (37)
116 1x5w_A Zinc finger protein 64, 24.6 23 0.00078 21.8 0.8 12 115-126 8-19 (70)
117 1wge_A Hypothetical protein 26 24.4 19 0.00065 25.6 0.4 12 129-140 29-40 (83)
118 1srk_A Zinc finger protein ZFP 24.4 26 0.00089 18.2 0.9 11 130-140 7-18 (35)
119 1rik_A E6APC1 peptide; E6-bind 24.2 22 0.00074 17.4 0.5 11 131-141 3-14 (29)
120 2ecv_A Tripartite motif-contai 24.0 35 0.0012 21.9 1.7 26 116-142 19-44 (85)
121 2d8y_A Eplin protein; LIM doma 24.0 21 0.00071 24.2 0.5 27 117-143 43-69 (91)
122 2lvt_A Zinc finger and BTB dom 29.7 16 0.00056 18.1 0.0 12 131-142 3-15 (29)
123 2lv2_A Insulinoma-associated p 23.9 22 0.00076 24.2 0.7 27 115-141 27-68 (85)
124 2d8t_A Dactylidin, ring finger 23.5 19 0.00067 23.0 0.3 48 115-163 14-64 (71)
125 2elt_A Zinc finger protein 406 22.5 34 0.0012 17.7 1.2 9 131-139 10-19 (36)
126 2elp_A Zinc finger protein 406 22.3 34 0.0012 18.0 1.2 12 130-141 9-21 (37)
127 2egq_A FHL1 protein; LIM domai 22.1 26 0.0009 22.6 0.7 27 117-143 47-73 (77)
128 3l11_A E3 ubiquitin-protein li 21.8 32 0.0011 24.0 1.2 24 117-141 16-39 (115)
129 4gop_C Putative uncharacterize 21.5 23 0.00079 31.1 0.4 30 116-145 308-344 (444)
130 2els_A Zinc finger protein 406 21.4 25 0.00086 18.5 0.4 12 130-141 9-21 (36)
131 2elv_A Zinc finger protein 406 21.2 33 0.0011 18.0 0.9 11 130-140 9-20 (36)
132 1x3h_A Leupaxin; paxillin fami 20.8 30 0.001 22.5 0.8 27 117-143 42-68 (80)
133 2lvr_A Zinc finger and BTB dom 26.2 21 0.00071 17.6 0.0 12 131-142 4-16 (30)
134 2ct7_A Ring finger protein 31; 20.5 35 0.0012 23.4 1.2 18 130-147 43-61 (86)
135 2elm_A Zinc finger protein 406 20.5 36 0.0012 18.2 1.0 12 130-141 9-21 (37)
136 1twf_L ABC10-alpha, DNA-direct 20.5 30 0.001 23.7 0.8 23 115-137 27-53 (70)
No 1
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=99.95 E-value=2e-30 Score=190.39 Aligned_cols=61 Identities=48% Similarity=1.074 Sum_probs=58.4
Q ss_pred cccCCcccccccccccc-ceeeecCccccccCCCCCCCCCCccchHhhHHHHHHhCCccccc
Q 030404 113 KRVVNRCSGCRRKVGLT-GFRCRCGELFCGEHRYSDRHDCSYDYKSAGRDAIARENPVIKAA 173 (178)
Q Consensus 113 ~~~~~rC~~C~kkvgl~-gf~CrCg~~FC~~HRy~e~H~C~fDyk~~~r~~l~k~NP~v~~~ 173 (178)
+..++||+.|+|||||+ +|+||||++||+.|||||+|+|+||||++||++|+|+||+|+++
T Consensus 22 k~~~~rC~~C~kkvgl~~~f~CrCg~~FC~~HRy~e~H~C~fDyK~~gr~~iak~NPvV~a~ 83 (85)
T 1wff_A 22 KKIMKHCFLCGKKTGLATSFECRCGNNFCASHRYAEAHGCNYDYKSAGRRYLEEANPVSGPS 83 (85)
T ss_dssp CCCCCBCSSSCCBCSSSSCEECTTCCEECTTTCSTGGGTCCSCCSSSCCCCCCCCCCCCCTT
T ss_pred cccCccchhhCCeecccCCeEcCCCCEecccCCCccCCCCcchhhHHHHHHHHHHCCeecCC
Confidence 55689999999999995 99999999999999999999999999999999999999999986
No 2
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=99.92 E-value=2e-27 Score=166.29 Aligned_cols=53 Identities=53% Similarity=1.197 Sum_probs=50.1
Q ss_pred ccccCCccccccccccccceeeecCccccccCCCCCCCCCCccchHhhHHHHH
Q 030404 112 EKRVVNRCSGCRRKVGLTGFRCRCGELFCGEHRYSDRHDCSYDYKSAGRDAIA 164 (178)
Q Consensus 112 ~~~~~~rC~~C~kkvgl~gf~CrCg~~FC~~HRy~e~H~C~fDyk~~~r~~l~ 164 (178)
++..++||+.|+|||||++|+||||++||+.|||||+|+|+||||++||++|+
T Consensus 11 ~k~~~~rC~~C~kkvgl~~f~CrCg~~FC~~HRy~e~H~C~fDyk~~gr~~l~ 63 (64)
T 1wfh_A 11 PPQRPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGSGPSS 63 (64)
T ss_dssp CCSSCCCCTTTCCCCCTTCEECSSSCEECTTTCSTTTTTCCCCCSCCCCSCCC
T ss_pred CCCcCCcChhhCCccCccCEEeecCCEeccccCCcccCCCCchhhHHHHHHhc
Confidence 35678999999999999999999999999999999999999999999999875
No 3
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=99.91 E-value=1.5e-26 Score=161.89 Aligned_cols=51 Identities=49% Similarity=1.230 Sum_probs=48.6
Q ss_pred cccCCccccccccccccceeeecCccccccCCCCCCCCCCccchHhhHHHH
Q 030404 113 KRVVNRCSGCRRKVGLTGFRCRCGELFCGEHRYSDRHDCSYDYKSAGRDAI 163 (178)
Q Consensus 113 ~~~~~rC~~C~kkvgl~gf~CrCg~~FC~~HRy~e~H~C~fDyk~~~r~~l 163 (178)
+..++||+.|+|||||++|+||||++||+.|||||+|+|+||||++||++|
T Consensus 12 ~~~~~rC~~C~kkvgl~~f~CrCg~~FC~~HR~~e~H~C~fDyk~~gr~~~ 62 (64)
T 1wg2_A 12 VRPNNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKEVGSGPS 62 (64)
T ss_dssp SCCSCSCTTTCCCCTTSCEECTTSCEECSSSCSSTTTTCCCCCSCSCCCSC
T ss_pred CCcCCcChhhCCcccccCeEeecCCEecccCCCccccCCCcchhHHhHHHh
Confidence 456899999999999999999999999999999999999999999999876
No 4
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=99.90 E-value=4.4e-25 Score=158.33 Aligned_cols=51 Identities=63% Similarity=1.299 Sum_probs=47.7
Q ss_pred ccccCCccccccccccccceeeecCccccccCCCCCCCCCCccchHhhHHH
Q 030404 112 EKRVVNRCSGCRRKVGLTGFRCRCGELFCGEHRYSDRHDCSYDYKSAGRDA 162 (178)
Q Consensus 112 ~~~~~~rC~~C~kkvgl~gf~CrCg~~FC~~HRy~e~H~C~fDyk~~~r~~ 162 (178)
.+..++||+.|+|||||++|.||||++||+.|||+|+|+|+||||++||++
T Consensus 21 ~k~~~nRC~~CrKkvgL~gf~CrCg~~FCs~HRy~e~H~C~fDyk~~gr~~ 71 (74)
T 1wfl_A 21 PKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEASGP 71 (74)
T ss_dssp CCSCTTBCSSSCCBCGGGCEECTTSCEECSSSCSTTTTTCCCCGGGTSSCC
T ss_pred CCCcCCcChhhCCcccccCeecCCCCEechhcCCCccCCCcchhhhhchhh
Confidence 345689999999999999999999999999999999999999999999874
No 5
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=99.90 E-value=1.2e-25 Score=161.25 Aligned_cols=52 Identities=46% Similarity=1.174 Sum_probs=49.0
Q ss_pred ccccCCccccccccccccceeeecCccccccCCCCCCCCCCccchHhhHHHH
Q 030404 112 EKRVVNRCSGCRRKVGLTGFRCRCGELFCGEHRYSDRHDCSYDYKSAGRDAI 163 (178)
Q Consensus 112 ~~~~~~rC~~C~kkvgl~gf~CrCg~~FC~~HRy~e~H~C~fDyk~~~r~~l 163 (178)
++..++||+.|+|+|||++|+||||++||+.|||||+|+|+||||++||++|
T Consensus 21 ~k~~~~RC~~C~kkvgL~~f~CrCg~~FCs~HRy~e~H~C~fDyk~~gr~~~ 72 (74)
T 1wfp_A 21 PKSTATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGVASGPS 72 (74)
T ss_dssp TTCCCCBCSSSCCBCTTTCEECTTSCEECTTTCSTTTSCCCSCTTSCCCCCC
T ss_pred CcccCccchhhcCcccccceEeccCCEeccccCCCcCCCCcCchhHHhHHhh
Confidence 3567899999999999999999999999999999999999999999999876
No 6
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=8.8e-26 Score=159.34 Aligned_cols=52 Identities=35% Similarity=0.803 Sum_probs=48.2
Q ss_pred ccccCCccccccccccccc---eeeecCccccccCCCCCCCCCCccchHhhHHHH
Q 030404 112 EKRVVNRCSGCRRKVGLTG---FRCRCGELFCGEHRYSDRHDCSYDYKSAGRDAI 163 (178)
Q Consensus 112 ~~~~~~rC~~C~kkvgl~g---f~CrCg~~FC~~HRy~e~H~C~fDyk~~~r~~l 163 (178)
+++.++||+.|+|||||++ |+||||++||+.|||||+|+|+||||++||+.|
T Consensus 11 ~~~~~~rC~~C~kk~gL~~~egf~CrCg~~FC~~HRy~e~H~C~fDyk~~gr~~~ 65 (67)
T 1x4w_A 11 KQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGSGPS 65 (67)
T ss_dssp SCSCTTBCSSSCCBCCHHHHHHHCCSSSCCCCTTTCSTGGGTCSSCSSCSSCCCC
T ss_pred CCccCCcchhhCCeecccccCceEecCCCEehhccCCccccCCcccccccccccc
Confidence 3567899999999999995 999999999999999999999999999999765
No 7
>2kzy_A ZNF216-A20, zfand5 protein (zinc finger protein 216 (predicte isoform CRA_A); A20 domain, atrogene, metal binding Pro; NMR {Rattus norvegicus} PDB: 2l00_A
Probab=99.72 E-value=2.9e-18 Score=119.18 Aligned_cols=44 Identities=43% Similarity=0.878 Sum_probs=36.4
Q ss_pred CCccccccccccCCCcccccccccCCCcCCccCCCchhhhhhhhhhhhccc
Q 030404 1 MAQKTEKEETEFKVPETLTLCVNNCGFTGNPATNNMCQKCFNATATTTASA 51 (178)
Q Consensus 1 Ma~~~~~~~pe~~~p~~~~lC~ngCGFfGs~at~n~CSkCyr~~~~~~~~~ 51 (178)
|++++. +++ +| +||+|||||||||+|+||||||||+++.+++++
T Consensus 3 M~~e~~--~~~--~~---~lC~ngCGFfGnpaT~nlCSkCyr~~~~~~~~~ 46 (62)
T 2kzy_A 3 MAQETN--QTP--GP---MLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNS 46 (62)
T ss_dssp CCCCCC--CCS--CC---CBCTTCCSSBCCTTTTSCCHHHHHHHHHHHHHH
T ss_pred hhhccc--CCC--cc---cchhhCCCCcCChhhcCcCHHHHHHHHHhhhcc
Confidence 886654 344 56 899999999999999999999999998765554
No 8
>2c7n_A Rabex-5, GEF 1, RAB guanine nucleotide exchange factor 1; protein-binding, ubiquitin binding domain, endocytosis, NUCL protein, polyprotein; 2.1A {Homo sapiens} SCOP: g.39.1.15 PDB: 2c7m_A 2fif_B 2fid_B
Probab=99.64 E-value=4.2e-17 Score=116.59 Aligned_cols=31 Identities=35% Similarity=0.849 Sum_probs=26.8
Q ss_pred cccccccCCCcCCccCCCchhhhhhhhhhhh
Q 030404 18 LTLCVNNCGFTGNPATNNMCQKCFNATATTT 48 (178)
Q Consensus 18 ~~lC~ngCGFfGs~at~n~CSkCyr~~~~~~ 48 (178)
++||+|||||||||+|+||||||||+...+.
T Consensus 16 ~~lC~ngCGFfGnpaT~nlCSkCyrd~~~k~ 46 (74)
T 2c7n_A 16 DLLCKKGCGYYGNPAWQGFCSKCWREEYHKA 46 (74)
T ss_dssp --CCTTCSSSCCCGGGTTCCHHHHHHHHHHH
T ss_pred chhHHhCCCCCCChhhcCccHHHHHHHHHHH
Confidence 3899999999999999999999999986543
No 9
>3oj3_I Tumor necrosis factor alpha-induced protein 3; ubiquitin, zinc finger, zinc ION, protein binding-hydrolase; 2.50A {Homo sapiens} PDB: 3oj4_C
Probab=99.53 E-value=2e-15 Score=100.16 Aligned_cols=28 Identities=25% Similarity=0.721 Sum_probs=26.6
Q ss_pred cccc-ccCCCcCCccCCCchhhhhhhhhh
Q 030404 19 TLCV-NNCGFTGNPATNNMCQKCFNATAT 46 (178)
Q Consensus 19 ~lC~-ngCGFfGs~at~n~CSkCyr~~~~ 46 (178)
.||+ |||||||||+|+|||||||||+..
T Consensus 19 ~lC~~ngCGFfG~p~t~n~CSkCyre~~e 47 (49)
T 3oj3_I 19 SKCRKAGCVYFGTPENKGFCTLCFIEYRE 47 (49)
T ss_dssp CBCSSTTCSSBCBGGGTTBCHHHHHHHHH
T ss_pred cccccCCCCCccCcccCCcchHHHHHHHH
Confidence 7999 999999999999999999999865
No 10
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=99.32 E-value=2.1e-13 Score=99.96 Aligned_cols=58 Identities=24% Similarity=0.437 Sum_probs=48.4
Q ss_pred cccCCcccc--ccccccccceeee-cCccccccCCCCCCCCCCccchHhhHHHHHHhCCcccccccccC
Q 030404 113 KRVVNRCSG--CRRKVGLTGFRCR-CGELFCGEHRYSDRHDCSYDYKSAGRDAIARENPVIKAAKIVRV 178 (178)
Q Consensus 113 ~~~~~rC~~--C~kkvgl~gf~Cr-Cg~~FC~~HRy~e~H~C~fDyk~~~r~~l~k~NP~v~~~Kl~ki 178 (178)
+..++||.. |+++ +|++|.|+ |+.+||..|||+++|+|+.. .+.+.++...+.++.+|
T Consensus 22 ~~~~~~C~~~~Ck~~-~~l~f~C~~C~~~FC~~HR~~e~H~C~~~-------~~~k~~~~~~~~l~~~~ 82 (86)
T 1wfe_A 22 EHKSYSCSFKGCTDV-ELVAVICPYCEKNFCLRHRHQSDHDCEKL-------EVAKPRMAATQKLVRSG 82 (86)
T ss_dssp CSCCEECCSTTCCCE-ESSCEECTTTCCEECGGGCSTGGGTCSSS-------SCCCSSCCCCCCCSSCS
T ss_pred CCCCCCCCCcCCCCC-CccceECCCCCcccccccCCccCCCCCCC-------cccccchHHHHHHHHHH
Confidence 445789999 9998 78999999 99999999999999999975 34667777777776655
No 11
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=7.4e-13 Score=92.18 Aligned_cols=40 Identities=38% Similarity=0.850 Sum_probs=36.7
Q ss_pred cccCCcccc--ccccccccceeee-cCccccccCCCCCCCCCCc
Q 030404 113 KRVVNRCSG--CRRKVGLTGFRCR-CGELFCGEHRYSDRHDCSY 153 (178)
Q Consensus 113 ~~~~~rC~~--C~kkvgl~gf~Cr-Cg~~FC~~HRy~e~H~C~f 153 (178)
+...+||.. |+++ +|++|.|+ |+.+||..|||+|+|+|+-
T Consensus 9 k~~~~~Cs~~~Ck~~-~ll~f~C~~C~~~FC~~HR~~e~H~C~~ 51 (63)
T 1x4v_A 9 KIFTNKCERAGCRQR-EMMKLTCERCSRNFCIKHRHPLDHDCSG 51 (63)
T ss_dssp CTTCCCCCSTTCCCC-CSSCCBCSSSCCBCCHHHHSTTSSCCCS
T ss_pred cccCCCCCccCCCCC-CccceECCCCCcccCcccCCccCCcCCC
Confidence 456799999 9998 89999999 9999999999999999973
No 12
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=99.23 E-value=1.5e-12 Score=93.35 Aligned_cols=42 Identities=36% Similarity=0.797 Sum_probs=38.6
Q ss_pred cCCcccc--ccccccccceeee-cCccccccCCCCCCCCCCccchH
Q 030404 115 VVNRCSG--CRRKVGLTGFRCR-CGELFCGEHRYSDRHDCSYDYKS 157 (178)
Q Consensus 115 ~~~rC~~--C~kkvgl~gf~Cr-Cg~~FC~~HRy~e~H~C~fDyk~ 157 (178)
..+||.. |+++ ++++|+|+ |+.+||..|||++.|+|+++++.
T Consensus 13 ~g~~Cs~~~C~~~-dflpf~C~~C~~~FC~~HR~~e~H~C~~~~~~ 57 (75)
T 1wys_A 13 IGQHCQVQHCRQR-DFLPFVCDGCSGIFCLEHRSKDSHGCSEVNVV 57 (75)
T ss_dssp CCCCCSCTTTCCC-SCCCEECTTTCCEECSTTCSSGGGTCCCCSSC
T ss_pred cCCCcCcccCCCc-cceeeECcccCcCcCcccCCccccCCCCCccc
Confidence 3689998 9987 79999999 99999999999999999999873
No 13
>2eqe_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=97.68 E-value=1.8e-05 Score=51.91 Aligned_cols=28 Identities=25% Similarity=0.730 Sum_probs=25.8
Q ss_pred cccc-ccCCCcCCccCCCchhhhhhhhhh
Q 030404 19 TLCV-NNCGFTGNPATNNMCQKCFNATAT 46 (178)
Q Consensus 19 ~lC~-ngCGFfGs~at~n~CSkCyr~~~~ 46 (178)
.+|. .||-|||+|.+.++|..||.++..
T Consensus 16 ~kCRk~GC~fFGTpen~GFCTlCf~eyre 44 (48)
T 2eqe_A 16 SKCRKAGCVYFGTPENKGFCTLCFIEYSG 44 (48)
T ss_dssp SBCSSTTCCSBCCTTTTTCCHHHHHHHHS
T ss_pred chhhhcCCCcccCcccCceeeeehhhhhc
Confidence 6894 999999999999999999999865
No 14
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=94.40 E-value=0.019 Score=39.62 Aligned_cols=27 Identities=44% Similarity=1.102 Sum_probs=24.1
Q ss_pred Ccccccccccccc--ceeee-cCccccccC
Q 030404 117 NRCSGCRRKVGLT--GFRCR-CGELFCGEH 143 (178)
Q Consensus 117 ~rC~~C~kkvgl~--gf~Cr-Cg~~FC~~H 143 (178)
..|..|+++.+++ -..|| ||.+||+.+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~C 41 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEH 41 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGG
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccc
Confidence 5899999999987 49999 999999875
No 15
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=93.81 E-value=0.029 Score=39.46 Aligned_cols=28 Identities=29% Similarity=1.030 Sum_probs=24.4
Q ss_pred CCccccccccccccc--eeee-cCccccccC
Q 030404 116 VNRCSGCRRKVGLTG--FRCR-CGELFCGEH 143 (178)
Q Consensus 116 ~~rC~~C~kkvgl~g--f~Cr-Cg~~FC~~H 143 (178)
...|..|+++.+++. ..|| ||.+||+.+
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~C 49 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTC 49 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGG
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHH
Confidence 468999999999874 8999 999999864
No 16
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=93.45 E-value=0.036 Score=39.77 Aligned_cols=29 Identities=38% Similarity=0.984 Sum_probs=25.0
Q ss_pred cCCccccccccccccc--eeee-cCccccccC
Q 030404 115 VVNRCSGCRRKVGLTG--FRCR-CGELFCGEH 143 (178)
Q Consensus 115 ~~~rC~~C~kkvgl~g--f~Cr-Cg~~FC~~H 143 (178)
....|..|+++.+++. ..|| ||.+||+.+
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~C 39 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGC 39 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTT
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhH
Confidence 3468999999999874 8999 999999874
No 17
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=93.45 E-value=0.032 Score=42.33 Aligned_cols=28 Identities=39% Similarity=1.051 Sum_probs=24.2
Q ss_pred CCccccccccccccc--eeee-cCccccccC
Q 030404 116 VNRCSGCRRKVGLTG--FRCR-CGELFCGEH 143 (178)
Q Consensus 116 ~~rC~~C~kkvgl~g--f~Cr-Cg~~FC~~H 143 (178)
...|..|+++.+++. ..|| ||.+||+.+
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~C 99 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAEC 99 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGG
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHH
Confidence 468999999999864 8999 999999864
No 18
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.40 E-value=0.042 Score=38.71 Aligned_cols=28 Identities=29% Similarity=0.879 Sum_probs=24.5
Q ss_pred CCccccccccccccc--eeee-cCccccccC
Q 030404 116 VNRCSGCRRKVGLTG--FRCR-CGELFCGEH 143 (178)
Q Consensus 116 ~~rC~~C~kkvgl~g--f~Cr-Cg~~FC~~H 143 (178)
...|..|+++.+++. -.|| ||.+||+..
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~C 44 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRC 44 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTT
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhh
Confidence 468999999999874 8999 999999875
No 19
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=93.20 E-value=0.041 Score=38.86 Aligned_cols=28 Identities=36% Similarity=0.910 Sum_probs=24.4
Q ss_pred CCccccccccccccc--eeee-cCccccccC
Q 030404 116 VNRCSGCRRKVGLTG--FRCR-CGELFCGEH 143 (178)
Q Consensus 116 ~~rC~~C~kkvgl~g--f~Cr-Cg~~FC~~H 143 (178)
...|..|+++.+++. ..|| ||.+||+.+
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~C 51 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDC 51 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGG
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHH
Confidence 468999999999874 8999 999999864
No 20
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=92.48 E-value=0.05 Score=44.21 Aligned_cols=28 Identities=39% Similarity=1.051 Sum_probs=24.5
Q ss_pred CCccccccccccccc--eeee-cCccccccC
Q 030404 116 VNRCSGCRRKVGLTG--FRCR-CGELFCGEH 143 (178)
Q Consensus 116 ~~rC~~C~kkvgl~g--f~Cr-Cg~~FC~~H 143 (178)
...|..|+++.+++. ..|| ||.+||+.+
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~C 191 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQC 191 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTT
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHH
Confidence 369999999999874 9999 999999864
No 21
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=91.98 E-value=0.071 Score=38.18 Aligned_cols=28 Identities=39% Similarity=1.028 Sum_probs=24.2
Q ss_pred CCcccccccccccc--ceeee-cCccccccC
Q 030404 116 VNRCSGCRRKVGLT--GFRCR-CGELFCGEH 143 (178)
Q Consensus 116 ~~rC~~C~kkvgl~--gf~Cr-Cg~~FC~~H 143 (178)
...|..|+++.+++ -..|| ||.+||+..
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~C 50 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVC 50 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGG
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcc
Confidence 46899999999986 49999 999999763
No 22
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=91.31 E-value=0.09 Score=43.19 Aligned_cols=28 Identities=39% Similarity=1.171 Sum_probs=24.5
Q ss_pred CCcccccccccccc--ceeee-cCccccccC
Q 030404 116 VNRCSGCRRKVGLT--GFRCR-CGELFCGEH 143 (178)
Q Consensus 116 ~~rC~~C~kkvgl~--gf~Cr-Cg~~FC~~H 143 (178)
...|..|+++.+++ -..|| ||.+||+.+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~C 194 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKC 194 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTT
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhh
Confidence 46899999999986 59999 999999864
No 23
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=90.72 E-value=0.093 Score=39.97 Aligned_cols=41 Identities=20% Similarity=0.388 Sum_probs=28.7
Q ss_pred CCcccccccccccc--ceeee-cCcccccc---CCCCCCCCCCccch
Q 030404 116 VNRCSGCRRKVGLT--GFRCR-CGELFCGE---HRYSDRHDCSYDYK 156 (178)
Q Consensus 116 ~~rC~~C~kkvgl~--gf~Cr-Cg~~FC~~---HRy~e~H~C~fDyk 156 (178)
...|..|+++.+++ --.|| ||.+||+. |+.+..--|..=|.
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 46899999999886 48999 99999875 46665556665554
No 24
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=83.95 E-value=0.44 Score=41.08 Aligned_cols=41 Identities=22% Similarity=0.455 Sum_probs=27.5
Q ss_pred cCCccccccccc-cc--cceeee-cCccccccCCCCCCCCCCccch
Q 030404 115 VVNRCSGCRRKV-GL--TGFRCR-CGELFCGEHRYSDRHDCSYDYK 156 (178)
Q Consensus 115 ~~~rC~~C~kkv-gl--~gf~Cr-Cg~~FC~~HRy~e~H~C~fDyk 156 (178)
.+..|..|++.+ |+ .|++|| ||.++|..-.-.=. .|.-+.-
T Consensus 356 ~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~-~C~~~~~ 400 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP-PCGRHGQ 400 (406)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSC-CC-----
T ss_pred CCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCC-CCCCCch
Confidence 578999999988 66 489999 99999976432212 3876643
No 25
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=82.07 E-value=0.45 Score=31.89 Aligned_cols=24 Identities=21% Similarity=0.783 Sum_probs=19.6
Q ss_pred cCCccccccccccc--cceeee-cCcc
Q 030404 115 VVNRCSGCRRKVGL--TGFRCR-CGEL 138 (178)
Q Consensus 115 ~~~rC~~C~kkvgl--~gf~Cr-Cg~~ 138 (178)
.+..|..|++++++ .|++|| |+.+
T Consensus 18 ~~~~C~~Cg~~i~~gkq~~kC~dC~~~ 44 (61)
T 4b6d_A 18 KPESCVPCGKRIKFGKLSLKCRDCRVV 44 (61)
T ss_dssp SCEECTTTCCEECTTCEEEEESSSSCE
T ss_pred CCcccccccCEEEEeeEeeECCCCCCe
Confidence 46799999999987 589999 8643
No 26
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=81.19 E-value=0.3 Score=42.25 Aligned_cols=28 Identities=32% Similarity=0.830 Sum_probs=0.0
Q ss_pred CCcccccccccccc--ceeee-cCccccccC
Q 030404 116 VNRCSGCRRKVGLT--GFRCR-CGELFCGEH 143 (178)
Q Consensus 116 ~~rC~~C~kkvgl~--gf~Cr-Cg~~FC~~H 143 (178)
...|..|+++.+++ ...|| ||.+||+.+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~C 405 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNC 405 (434)
T ss_dssp -------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhh
Confidence 57899999999986 59999 999998653
No 27
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=76.77 E-value=1 Score=33.47 Aligned_cols=30 Identities=30% Similarity=0.863 Sum_probs=23.2
Q ss_pred CCccccccccccccceeee-cCccccccCCCCCCC
Q 030404 116 VNRCSGCRRKVGLTGFRCR-CGELFCGEHRYSDRH 149 (178)
Q Consensus 116 ~~rC~~C~kkvgl~gf~Cr-Cg~~FC~~HRy~e~H 149 (178)
..+|..|.....+ +.|- ||.++|+ ||+..|
T Consensus 24 ~~~C~~C~~~~~~--W~CL~CG~vgCg--r~~~~H 54 (109)
T 3c5k_A 24 TQPCGDCGTIQEN--WVCLSCYQVYCG--RYINGH 54 (109)
T ss_dssp TCCCTTTCCCSSE--EEETTTCCEEEC--TTTTCH
T ss_pred CCcCccccCCCCe--eeeeecCccccC--CCcChH
Confidence 4689999987665 6686 9999998 555555
No 28
>2eqf_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=75.09 E-value=1.3 Score=28.44 Aligned_cols=26 Identities=31% Similarity=0.788 Sum_probs=22.6
Q ss_pred cc-cccCCCcCCccCCCchhhhhhhhh
Q 030404 20 LC-VNNCGFTGNPATNNMCQKCFNATA 45 (178)
Q Consensus 20 lC-~ngCGFfGs~at~n~CSkCyr~~~ 45 (178)
.| +-+|.-|||.--+++|..||.-.+
T Consensus 11 rC~apgCdhygN~kc~GyCNeC~~fKq 37 (46)
T 2eqf_A 11 RCRAPACDHFGNAKCNGYCNECFQFKQ 37 (46)
T ss_dssp SCSSTTCCSCCBGGGTBSCHHHHHHHS
T ss_pred cccCcccccccchhhhhhhHHHHhhHH
Confidence 45 889999999999999999997543
No 29
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=70.37 E-value=2.8 Score=27.22 Aligned_cols=28 Identities=25% Similarity=0.596 Sum_probs=23.9
Q ss_pred ccc-cccCCCcCCccCCCchhhhhhhhhh
Q 030404 19 TLC-VNNCGFTGNPATNNMCQKCFNATAT 46 (178)
Q Consensus 19 ~lC-~ngCGFfGs~at~n~CSkCyr~~~~ 46 (178)
+.| .-+|-||=|..|+-+|-.||...+.
T Consensus 12 vkCeTPnCpF~mSVnTQP~CHEC~errq~ 40 (49)
T 2eqg_A 12 VKCETPNCPFFMSVNTQPLCHECSERRQK 40 (49)
T ss_dssp SBCSSTTCCSBCCTTTTTSCHHHHHHHHT
T ss_pred EeecCCCCCeEEEecCccchHHHHHHHhh
Confidence 457 5689999999999999999986655
No 30
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=65.54 E-value=2.8 Score=31.38 Aligned_cols=26 Identities=23% Similarity=0.553 Sum_probs=18.0
Q ss_pred cccccceeee-cCccccccCCCCCCCCCC
Q 030404 125 KVGLTGFRCR-CGELFCGEHRYSDRHDCS 152 (178)
Q Consensus 125 kvgl~gf~Cr-Cg~~FC~~HRy~e~H~C~ 152 (178)
+|-+..++|+ ||++| .-+......|+
T Consensus 62 ~L~v~p~~C~~CG~~F--~~~~~kPsrCP 88 (105)
T 2gmg_A 62 VLLIKPAQCRKCGFVF--KAEINIPSRCP 88 (105)
T ss_dssp EEEECCCBBTTTCCBC--CCCSSCCSSCS
T ss_pred EEEEECcChhhCcCee--cccCCCCCCCc
Confidence 5656789998 99999 33455555564
No 31
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=64.19 E-value=2.5 Score=27.20 Aligned_cols=22 Identities=23% Similarity=0.821 Sum_probs=18.2
Q ss_pred Cccccccccccccceeee-cCccc
Q 030404 117 NRCSGCRRKVGLTGFRCR-CGELF 139 (178)
Q Consensus 117 ~rC~~C~kkvgl~gf~Cr-Cg~~F 139 (178)
..|..|+|.| ..|++|+ |+..+
T Consensus 15 t~C~~C~k~i-~~G~kC~~Ck~~c 37 (49)
T 1kbe_A 15 QVCNVCQKSM-IFGVKCKHCRLKC 37 (49)
T ss_dssp CCCSSSCCSS-CCEEEETTTTEEE
T ss_pred cCccccCcee-ECcCCCCCCCCcc
Confidence 5799999998 5799998 87654
No 32
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=63.30 E-value=8.4 Score=25.25 Aligned_cols=25 Identities=32% Similarity=0.814 Sum_probs=19.6
Q ss_pred cCCccccccccc-cc--cceeee-cCccc
Q 030404 115 VVNRCSGCRRKV-GL--TGFRCR-CGELF 139 (178)
Q Consensus 115 ~~~rC~~C~kkv-gl--~gf~Cr-Cg~~F 139 (178)
.+..|..|++.| || .|++|+ |+.+.
T Consensus 22 ~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~ 50 (65)
T 2enz_A 22 SPTFCEHCGTLLWGLARQGLKCDACGMNV 50 (65)
T ss_dssp SCCBCSSSCCBCCCSSSCSEEESSSCCEE
T ss_pred CCcCchhcChhheecCCcccccCCCCCcc
Confidence 467899999987 44 589998 87664
No 33
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=63.28 E-value=3.4 Score=29.43 Aligned_cols=23 Identities=26% Similarity=0.855 Sum_probs=18.3
Q ss_pred CCccccccccc----cccceeee-cCcc
Q 030404 116 VNRCSGCRRKV----GLTGFRCR-CGEL 138 (178)
Q Consensus 116 ~~rC~~C~kkv----gl~gf~Cr-Cg~~ 138 (178)
..+|..|+|.+ +|.||+|. |+.+
T Consensus 38 ~s~C~vC~k~c~s~~~L~g~rC~WCq~~ 65 (84)
T 1r79_A 38 SAKCTVCDKTCGSVLRLQDWRCLWCKAM 65 (84)
T ss_dssp TCBCSSSCCBCCCTTTCCCEEESSSCCE
T ss_pred CCEeCCCCCEeCCccCCCCCCCcccChh
Confidence 36999999985 56899998 7655
No 34
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=63.05 E-value=3.8 Score=25.20 Aligned_cols=24 Identities=33% Similarity=0.861 Sum_probs=18.8
Q ss_pred cCCccccccccc-cc--cceeee-cCcc
Q 030404 115 VVNRCSGCRRKV-GL--TGFRCR-CGEL 138 (178)
Q Consensus 115 ~~~rC~~C~kkv-gl--~gf~Cr-Cg~~ 138 (178)
.+..|..|++.+ || .|++|+ |+.+
T Consensus 10 ~pt~C~~C~~~l~g~~~qg~~C~~C~~~ 37 (50)
T 1ptq_A 10 SPTFCDHCGSLLWGLVKQGLKCEDCGMN 37 (50)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCE
T ss_pred CCCCcCCCCceeeccCCccCEeCCCCCe
Confidence 467899999988 33 589998 7655
No 35
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=59.31 E-value=4.5 Score=27.55 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=20.7
Q ss_pred ccCCccccccccccccceeee-cCcc
Q 030404 114 RVVNRCSGCRRKVGLTGFRCR-CGEL 138 (178)
Q Consensus 114 ~~~~rC~~C~kkvgl~gf~Cr-Cg~~ 138 (178)
..+..|..|++.|.-.|++|+ ||.+
T Consensus 33 ~~pt~C~~C~~~l~~qG~kC~~C~~~ 58 (72)
T 2fnf_X 33 GGPGWCDLCGREVLRQALRCANCKFT 58 (72)
T ss_dssp SSCCBCTTTSSBCSSCCEECTTSSCE
T ss_pred CCCcchhhhhHHHHhCcCccCCCCCe
Confidence 357899999999955799998 8765
No 36
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=58.34 E-value=4.6 Score=26.74 Aligned_cols=30 Identities=27% Similarity=0.659 Sum_probs=24.3
Q ss_pred cCCccccccccccccc----eeee---cCccccccCC
Q 030404 115 VVNRCSGCRRKVGLTG----FRCR---CGELFCGEHR 144 (178)
Q Consensus 115 ~~~rC~~C~kkvgl~g----f~Cr---Cg~~FC~~HR 144 (178)
...+|..|+..|-+.+ ..|+ |+..||..=.
T Consensus 5 ~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~ 41 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCL 41 (60)
T ss_dssp CCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSC
T ss_pred cceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcC
Confidence 3568999998888863 8998 9999998654
No 37
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=57.94 E-value=4.5 Score=36.80 Aligned_cols=39 Identities=23% Similarity=0.501 Sum_probs=28.6
Q ss_pred cCCccccccccc-ccc--ceeee-cCccccccCCCCCCCCCCcc
Q 030404 115 VVNRCSGCRRKV-GLT--GFRCR-CGELFCGEHRYSDRHDCSYD 154 (178)
Q Consensus 115 ~~~rC~~C~kkv-gl~--gf~Cr-Cg~~FC~~HRy~e~H~C~fD 154 (178)
.+..|..|++.+ ||. |++|+ ||.+.|....-.= ..|...
T Consensus 528 ~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~v-~~C~~~ 570 (587)
T 3ky9_A 528 ETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRV-PPCGRH 570 (587)
T ss_dssp SCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGGS-CCC---
T ss_pred CCcccccccccccccccCCcCCCCCCCccchhhhhcC-CCCCCC
Confidence 578999999987 774 89998 9999988755433 477544
No 38
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=57.69 E-value=3.6 Score=25.60 Aligned_cols=24 Identities=38% Similarity=0.916 Sum_probs=19.6
Q ss_pred cCCccccccccccccceeee-cCccc
Q 030404 115 VVNRCSGCRRKVGLTGFRCR-CGELF 139 (178)
Q Consensus 115 ~~~rC~~C~kkvgl~gf~Cr-Cg~~F 139 (178)
.+..|..|++.+- .|++|+ |+...
T Consensus 13 ~pt~C~~C~~~l~-qG~~C~~C~~~~ 37 (52)
T 1faq_A 13 KLAFCDICQKFLL-NGFRCQTCGYKF 37 (52)
T ss_dssp SCEECTTSSSEEC-SEEECTTTTCCB
T ss_pred CCcCCCCcccccc-cCCEeCCCCCeE
Confidence 4679999999875 899998 87654
No 39
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.07 E-value=5.1 Score=27.63 Aligned_cols=25 Identities=40% Similarity=0.950 Sum_probs=20.0
Q ss_pred cCCccccccccc-cc--cceeee-cCccc
Q 030404 115 VVNRCSGCRRKV-GL--TGFRCR-CGELF 139 (178)
Q Consensus 115 ~~~rC~~C~kkv-gl--~gf~Cr-Cg~~F 139 (178)
.+..|..|++.| || .|++|+ |+.++
T Consensus 27 ~pt~C~~C~~~lwGl~kqg~~C~~C~~~~ 55 (83)
T 2yuu_A 27 QPTFCSVCKDFVWGLNKQGYKCRQCNAAI 55 (83)
T ss_dssp SCCCCSSSCCCCCSSSCCEEEETTTCCEE
T ss_pred CCcChhhcChhhccccccccccCCcCCee
Confidence 578999999988 44 589998 87764
No 40
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=56.33 E-value=3.3 Score=27.70 Aligned_cols=13 Identities=31% Similarity=0.659 Sum_probs=10.9
Q ss_pred CCccccccccccc
Q 030404 116 VNRCSGCRRKVGL 128 (178)
Q Consensus 116 ~~rC~~C~kkvgl 128 (178)
|.||++|+|-+|-
T Consensus 3 PVRCFTCGkvi~~ 15 (55)
T 1ef4_A 3 PVRCLSCGKPVSA 15 (55)
T ss_dssp SSSCSCTTSCCHH
T ss_pred CeecCCCCCChhH
Confidence 6799999997754
No 41
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=56.32 E-value=4 Score=26.64 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=20.2
Q ss_pred ccCCccccccccccccceeee-cCcc
Q 030404 114 RVVNRCSGCRRKVGLTGFRCR-CGEL 138 (178)
Q Consensus 114 ~~~~rC~~C~kkvgl~gf~Cr-Cg~~ 138 (178)
..+..|..|++.|.-.|++|+ |+.+
T Consensus 20 ~~pt~C~~C~~~i~kqg~kC~~C~~~ 45 (59)
T 1rfh_A 20 GGPGWCDLCGREVLRQALRCANCKFT 45 (59)
T ss_dssp SCCEECTTTCSEECSCCEECTTTSCE
T ss_pred CCCeEchhcchhhhhCccEeCCCCCe
Confidence 357899999999955799998 7665
No 42
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=55.96 E-value=3.5 Score=27.68 Aligned_cols=25 Identities=28% Similarity=0.856 Sum_probs=20.6
Q ss_pred Cccccccccccccc-eeee-cCccccc
Q 030404 117 NRCSGCRRKVGLTG-FRCR-CGELFCG 141 (178)
Q Consensus 117 ~rC~~C~kkvgl~g-f~Cr-Cg~~FC~ 141 (178)
..|+.|.+.+.-.+ |.|. |+..||.
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~ 42 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCV 42 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCH
T ss_pred CcccccCcccCCCccEECCccCcCccc
Confidence 35999999986555 9995 9999995
No 43
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=54.51 E-value=4.2 Score=28.40 Aligned_cols=14 Identities=43% Similarity=0.731 Sum_probs=11.6
Q ss_pred cCCccccccccccc
Q 030404 115 VVNRCSGCRRKVGL 128 (178)
Q Consensus 115 ~~~rC~~C~kkvgl 128 (178)
.|.||++|+|-+|-
T Consensus 3 iPVRCFTCGkvi~~ 16 (70)
T 1twf_J 3 VPVRCFSCGKVVGD 16 (70)
T ss_dssp CCSBCTTTCCBCTT
T ss_pred CCeecCCCCCChHH
Confidence 36899999998865
No 44
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=52.88 E-value=6.9 Score=25.62 Aligned_cols=24 Identities=33% Similarity=0.861 Sum_probs=18.7
Q ss_pred cCCccccccccc-cc--cceeee-cCcc
Q 030404 115 VVNRCSGCRRKV-GL--TGFRCR-CGEL 138 (178)
Q Consensus 115 ~~~rC~~C~kkv-gl--~gf~Cr-Cg~~ 138 (178)
.+..|..|++.| || .|++|+ |+.+
T Consensus 19 ~pt~C~~C~~~l~Gl~~qg~~C~~C~~~ 46 (65)
T 3uej_A 19 SPTFCDHCGSLLWGLVKQGLKCEDCGMN 46 (65)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCE
T ss_pred CCCcccccChhhhccCceeeECCCCCCe
Confidence 467999999987 44 489998 7654
No 45
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=48.15 E-value=5.3 Score=27.60 Aligned_cols=13 Identities=23% Similarity=0.399 Sum_probs=10.6
Q ss_pred CCccccccccccc
Q 030404 116 VNRCSGCRRKVGL 128 (178)
Q Consensus 116 ~~rC~~C~kkvgl 128 (178)
|-||++|+|-+|-
T Consensus 4 PVRCFTCGkvi~~ 16 (66)
T 4ayb_N 4 PIRCFTCGSLIAD 16 (66)
T ss_dssp CSBCTTTCCBCHH
T ss_pred CcccCCCcHhHHH
Confidence 6799999997753
No 46
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.01 E-value=13 Score=25.02 Aligned_cols=29 Identities=24% Similarity=0.537 Sum_probs=17.5
Q ss_pred Cccccccccccccceee--ecCccccccCCC
Q 030404 117 NRCSGCRRKVGLTGFRC--RCGELFCGEHRY 145 (178)
Q Consensus 117 ~rC~~C~kkvgl~gf~C--rCg~~FC~~HRy 145 (178)
-+|..|++.|....|.. +=|..||..|-.
T Consensus 43 F~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~ 73 (82)
T 2co8_A 43 FRCHTCEATLWPGGYEQHPGDGHFYCLQHLP 73 (82)
T ss_dssp CBCSSSCCBCCTTSEECCTTTCCCEETTTCC
T ss_pred CEEcCCCCCcCCCceeEeCcCCEEEChHHHH
Confidence 45666676666555543 456677766653
No 47
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.01 E-value=14 Score=25.58 Aligned_cols=43 Identities=21% Similarity=0.444 Sum_probs=29.9
Q ss_pred cCCccccccccc-cc--cceeee-cCccccccCCCCCCCCCCccchH
Q 030404 115 VVNRCSGCRRKV-GL--TGFRCR-CGELFCGEHRYSDRHDCSYDYKS 157 (178)
Q Consensus 115 ~~~rC~~C~kkv-gl--~gf~Cr-Cg~~FC~~HRy~e~H~C~fDyk~ 157 (178)
.+..|..|++.| || .|++|+ |+.++=......=...|..++.+
T Consensus 27 ~pt~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk~C~~~v~~~C~~~~~e 73 (85)
T 2eli_A 27 SPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVINVPSLCGMDHTE 73 (85)
T ss_dssp SCCBCSSSCCBCCCSSSCEEECSSSCCEEETTTTTTSCSCCCCCCCC
T ss_pred CCcCCcccCccccccccCCCcCCCcCCccCHhHHhhcCCcCCcchhh
Confidence 578899999987 44 589998 88775444333344678877663
No 48
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=45.47 E-value=13 Score=25.27 Aligned_cols=26 Identities=27% Similarity=0.778 Sum_probs=20.4
Q ss_pred ccCCcccccccccccc---ceeee-cCccc
Q 030404 114 RVVNRCSGCRRKVGLT---GFRCR-CGELF 139 (178)
Q Consensus 114 ~~~~rC~~C~kkvgl~---gf~Cr-Cg~~F 139 (178)
....+|..|+..+.|. ..+|+ ||+-.
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAKEVIRCRECGHRV 48 (63)
T ss_dssp CCCCBCSSSCCBCCCCSSSCCCCSSSCCCC
T ss_pred CeEEECCCCCCeeecCCCCceECCCCCcEE
Confidence 4569999999999985 58997 76543
No 49
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=45.21 E-value=11 Score=23.66 Aligned_cols=27 Identities=26% Similarity=0.755 Sum_probs=18.7
Q ss_pred cCCccccccccccc--------------cceeee-cCccccc
Q 030404 115 VVNRCSGCRRKVGL--------------TGFRCR-CGELFCG 141 (178)
Q Consensus 115 ~~~rC~~C~kkvgl--------------~gf~Cr-Cg~~FC~ 141 (178)
.+.+|..|++.... ..|+|. ||..|-.
T Consensus 16 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCC
Confidence 46789999887542 238887 7777754
No 50
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=45.18 E-value=11 Score=24.88 Aligned_cols=24 Identities=33% Similarity=0.888 Sum_probs=18.9
Q ss_pred cCCccccccccc-cc--cceeee-cCcc
Q 030404 115 VVNRCSGCRRKV-GL--TGFRCR-CGEL 138 (178)
Q Consensus 115 ~~~rC~~C~kkv-gl--~gf~Cr-Cg~~ 138 (178)
.+..|..|++.| || .|++|+ |+.+
T Consensus 23 ~pt~C~~C~~~l~Gl~~qg~~C~~C~~~ 50 (66)
T 1y8f_A 23 TPTYCYECEGLLWGIARQGMRCTECGVK 50 (66)
T ss_dssp SCCCCTTTCCCCCSSCCEEEEETTTCCE
T ss_pred CCcChhhcChhhcccCcceeEcCCCCCe
Confidence 578899999988 43 489998 8765
No 51
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.15 E-value=11 Score=25.12 Aligned_cols=24 Identities=25% Similarity=0.701 Sum_probs=19.9
Q ss_pred CCccccccccccccceee-ecCcccccc
Q 030404 116 VNRCSGCRRKVGLTGFRC-RCGELFCGE 142 (178)
Q Consensus 116 ~~rC~~C~kkvgl~gf~C-rCg~~FC~~ 142 (178)
...|..|+. ..-|+| ||+..||+.
T Consensus 12 ~~~C~vC~~---~~kY~CPrC~~~yCSl 36 (56)
T 2yqq_A 12 TVVCVICLE---KPKYRCPACRVPYCSV 36 (56)
T ss_dssp CCCCTTTCS---CCSEECTTTCCEESSH
T ss_pred CCccCcCcC---CCeeeCCCCCCCeeCH
Confidence 457999997 567999 599999985
No 52
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=42.88 E-value=7.1 Score=25.10 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=18.7
Q ss_pred cCCcccccccccccc--------------ceeee-cCccccc
Q 030404 115 VVNRCSGCRRKVGLT--------------GFRCR-CGELFCG 141 (178)
Q Consensus 115 ~~~rC~~C~kkvgl~--------------gf~Cr-Cg~~FC~ 141 (178)
.|-.|..|+|..... .|.|. ||..|-.
T Consensus 3 Kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp CCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESS
T ss_pred CCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCC
Confidence 356788888765431 38897 8888854
No 53
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=42.52 E-value=7.5 Score=24.70 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=16.7
Q ss_pred CccccccccccccceeeecCccccccC
Q 030404 117 NRCSGCRRKVGLTGFRCRCGELFCGEH 143 (178)
Q Consensus 117 ~rC~~C~kkvgl~gf~CrCg~~FC~~H 143 (178)
-+|..|++.|....|.=+=|..||..|
T Consensus 40 F~C~~C~~~L~~~~~~~~~g~~yC~~~ 66 (72)
T 3f6q_B 40 FVCAQCFQQFPEGLFYEFEGRKYCEHD 66 (72)
T ss_dssp SSCTTTCCCCGGGCCEEETTEEECHHH
T ss_pred CcccCCCCCCCCCCeEeECCeEeCHHH
Confidence 456677777665555555666666554
No 54
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=42.07 E-value=9.2 Score=26.04 Aligned_cols=25 Identities=40% Similarity=0.915 Sum_probs=19.7
Q ss_pred cCCccccccccc-cc--cceeee-cCccc
Q 030404 115 VVNRCSGCRRKV-GL--TGFRCR-CGELF 139 (178)
Q Consensus 115 ~~~rC~~C~kkv-gl--~gf~Cr-Cg~~F 139 (178)
.+..|..|++-| || .|++|+ |+.+.
T Consensus 33 ~pt~C~~C~~~lwGl~kqG~~C~~C~~~~ 61 (77)
T 2enn_A 33 QPTFCSVCHEFVWGLNKQGYQCRQCNAAI 61 (77)
T ss_dssp SCEECSSSCCEECCTTCCEEECSSSCCEE
T ss_pred CCcCccccChhhccccccccCcCCCCCcC
Confidence 578999999987 44 589998 87654
No 55
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=41.44 E-value=11 Score=27.70 Aligned_cols=27 Identities=26% Similarity=0.744 Sum_probs=21.5
Q ss_pred Cccccccccccccceeee-cCccccccCCCC
Q 030404 117 NRCSGCRRKVGLTGFRCR-CGELFCGEHRYS 146 (178)
Q Consensus 117 ~rC~~C~kkvgl~gf~Cr-Cg~~FC~~HRy~ 146 (178)
-+|..|+|... |.|. |...||..|...
T Consensus 59 c~C~~C~k~~~---~~C~~Cp~sfC~~c~~g 86 (107)
T 4gne_A 59 HQCDECSSAAV---SFCEFCPHSFCKDHEKG 86 (107)
T ss_dssp GBCTTTCSBCC---EECSSSSCEECTTTCTT
T ss_pred CCCCcCCCCCC---cCcCCCCcchhhhccCC
Confidence 36788888654 8997 999999998753
No 56
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=39.78 E-value=9 Score=25.03 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=21.0
Q ss_pred ccCCccccccccccccceeee-cCcc
Q 030404 114 RVVNRCSGCRRKVGLTGFRCR-CGEL 138 (178)
Q Consensus 114 ~~~~rC~~C~kkvgl~gf~Cr-Cg~~ 138 (178)
.....|..|+.+++.---.|| ||++
T Consensus 12 ~~k~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 12 FKKYVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp SSEEECTTTCCEECTTCSSCSSSSSC
T ss_pred hCCccCCCCCCcCCCCceecCCCCCc
Confidence 356789999999888779998 9987
No 57
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=39.73 E-value=18 Score=25.91 Aligned_cols=32 Identities=25% Similarity=0.604 Sum_probs=21.6
Q ss_pred cCCccccccccccccceeee---cCccccccCCCCCCC
Q 030404 115 VVNRCSGCRRKVGLTGFRCR---CGELFCGEHRYSDRH 149 (178)
Q Consensus 115 ~~~rC~~C~kkvgl~gf~Cr---Cg~~FC~~HRy~e~H 149 (178)
...+|..|.+.- ..-+.|- ||.++|++ |+..|
T Consensus 24 ~~~~C~~C~~~~-~~lw~CL~~~Cg~vgCgr--~~~~H 58 (97)
T 2uzg_A 24 SLGTCQDCKVQG-PNLWACLENRCSYVGCGE--SQVDH 58 (97)
T ss_dssp TTTCCSSSCCCC-SSCEEECCTTCCCEECCT--TTTCH
T ss_pred CCCcCcCcCCCC-CCceeeecccCCCcccCC--CcChH
Confidence 346899998432 2227886 99999996 54443
No 58
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.72 E-value=16 Score=23.89 Aligned_cols=29 Identities=24% Similarity=0.484 Sum_probs=22.1
Q ss_pred CccccccccccccceeeecCccccccCCC
Q 030404 117 NRCSGCRRKVGLTGFRCRCGELFCGEHRY 145 (178)
Q Consensus 117 ~rC~~C~kkvgl~gf~CrCg~~FC~~HRy 145 (178)
-+|..|++.|....|.=+=|..||..|-.
T Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~ 64 (76)
T 1x68_A 36 FNCGKCSVSLVGKGFLTQNKEIFCQKCGS 64 (76)
T ss_dssp CBCTTTCCBCSSSCEEEETTEEEETTTTC
T ss_pred CChhhCCCcCCCCceEeECCEEECHHHhh
Confidence 57788888887666777888889887643
No 59
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=38.32 E-value=9 Score=27.20 Aligned_cols=41 Identities=20% Similarity=0.423 Sum_probs=26.8
Q ss_pred cCCcccccccccccc-----ceeee-cCccccccCCC---CCCCCCCccc
Q 030404 115 VVNRCSGCRRKVGLT-----GFRCR-CGELFCGEHRY---SDRHDCSYDY 155 (178)
Q Consensus 115 ~~~rC~~C~kkvgl~-----gf~Cr-Cg~~FC~~HRy---~e~H~C~fDy 155 (178)
.+..|..|++.|=.+ ||+|+ |+.+.=.++.. .--..|..+|
T Consensus 34 ~PT~Cd~C~~~lWGl~kqp~G~~C~~C~~~~HkrC~~k~~~v~~~C~~~~ 83 (84)
T 2row_A 34 FPTNCEACMKPLWHMFKPPPALECRRCHIKCHKDHMDKKEEIIAPCKVYY 83 (84)
T ss_dssp SCEECSSSSSEECCSSSCCCEEEESSSCCEEEHHHHHHTCTTCCCCSTTT
T ss_pred CCcchhhcCHhhhccccCCCCCEecCCCCccchhHhCCccccccccCcCC
Confidence 567899999887532 89998 87765444444 2344555554
No 60
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=38.26 E-value=11 Score=23.30 Aligned_cols=26 Identities=23% Similarity=0.500 Sum_probs=16.9
Q ss_pred cCCccccccccc-----------cccceeee-cCcccc
Q 030404 115 VVNRCSGCRRKV-----------GLTGFRCR-CGELFC 140 (178)
Q Consensus 115 ~~~rC~~C~kkv-----------gl~gf~Cr-Cg~~FC 140 (178)
.+..|..|++.. |-..|+|. ||..|-
T Consensus 13 k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~ 50 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVE 50 (62)
T ss_dssp SEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCE
T ss_pred CCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccc
Confidence 356788888742 12348886 887774
No 61
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.71 E-value=10 Score=24.28 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=18.0
Q ss_pred CccccccccccccceeeecCccccccC
Q 030404 117 NRCSGCRRKVGLTGFRCRCGELFCGEH 143 (178)
Q Consensus 117 ~rC~~C~kkvgl~gf~CrCg~~FC~~H 143 (178)
-+|..|++.|....|.=+=|..||..|
T Consensus 32 F~C~~C~~~L~~~~f~~~~g~~yC~~c 58 (70)
T 2d8x_A 32 FRCDLCQEVLADIGFVKNAGRHLCRPC 58 (70)
T ss_dssp SBCSSSCCBCSSSCCEEETTEEECHHH
T ss_pred CEeCCCCCcCCCCccEeECCeEECHHH
Confidence 567777777766666656666777654
No 62
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=36.90 E-value=18 Score=21.15 Aligned_cols=11 Identities=27% Similarity=0.772 Sum_probs=6.7
Q ss_pred ceeee-cCcccc
Q 030404 130 GFRCR-CGELFC 140 (178)
Q Consensus 130 gf~Cr-Cg~~FC 140 (178)
.|.|. ||..|-
T Consensus 29 ~~~C~~C~~~f~ 40 (57)
T 1bbo_A 29 PYHCTYCNFSFK 40 (57)
T ss_dssp CEECSSSSCEES
T ss_pred CccCCCCCchhc
Confidence 37775 666663
No 63
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=35.54 E-value=13 Score=26.93 Aligned_cols=19 Identities=32% Similarity=0.809 Sum_probs=17.0
Q ss_pred eeeecCccccccCCCCCCC
Q 030404 131 FRCRCGELFCGEHRYSDRH 149 (178)
Q Consensus 131 f~CrCg~~FC~~HRy~e~H 149 (178)
|+|.|++..=+.+|||..|
T Consensus 49 FkC~C~~Rt~sl~r~P~~~ 67 (92)
T 2kwq_A 49 FKCPCGNRTISLDRLPKKH 67 (92)
T ss_dssp EECTTSCEEEESSSSCCSC
T ss_pred EECCCCCceeEeeeCCCCC
Confidence 9999999998999999854
No 64
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=33.29 E-value=13 Score=25.17 Aligned_cols=10 Identities=20% Similarity=0.670 Sum_probs=5.1
Q ss_pred Cccccccccc
Q 030404 117 NRCSGCRRKV 126 (178)
Q Consensus 117 ~rC~~C~kkv 126 (178)
.+|..|++.|
T Consensus 26 ~~C~~C~~~I 35 (89)
T 1x64_A 26 PLCDKCGSGI 35 (89)
T ss_dssp CBCTTTCCBC
T ss_pred CCcccCCCEe
Confidence 4555555544
No 65
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.74 E-value=17 Score=19.17 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=6.1
Q ss_pred ceeee-cCcccc
Q 030404 130 GFRCR-CGELFC 140 (178)
Q Consensus 130 gf~Cr-Cg~~FC 140 (178)
.|+|. ||..|-
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2elq_A 9 PFKCSLCEYATR 20 (36)
T ss_dssp SEECSSSSCEES
T ss_pred CccCCCCCchhC
Confidence 46665 665554
No 66
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=32.65 E-value=14 Score=23.37 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=17.3
Q ss_pred CccccccccccccceeeecCccccccC
Q 030404 117 NRCSGCRRKVGLTGFRCRCGELFCGEH 143 (178)
Q Consensus 117 ~rC~~C~kkvgl~gf~CrCg~~FC~~H 143 (178)
-+|..|++.|....|.=+=|..||..|
T Consensus 32 F~C~~C~~~L~~~~~~~~~g~~yC~~~ 58 (66)
T 1nyp_A 32 FVCAKCEKPFLGHRHYERKGLAYCETH 58 (66)
T ss_dssp CBCTTTCCBCSSSCCEEETTEEECHHH
T ss_pred CEECCCCCCCCCCceEeECCcEECHHH
Confidence 467777777765556656666666544
No 67
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=32.35 E-value=12 Score=25.02 Aligned_cols=23 Identities=22% Similarity=0.626 Sum_probs=19.6
Q ss_pred cCCccccccccccccceeee-cCc
Q 030404 115 VVNRCSGCRRKVGLTGFRCR-CGE 137 (178)
Q Consensus 115 ~~~rC~~C~kkvgl~gf~Cr-Cg~ 137 (178)
...-|..|+-++....-.|| ||+
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~ 41 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHS 41 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCC
T ss_pred chhhhccccCcCCcccccccCCCC
Confidence 45679999999999999999 874
No 68
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=32.12 E-value=13 Score=29.15 Aligned_cols=30 Identities=33% Similarity=0.699 Sum_probs=21.1
Q ss_pred CCcccc--cccccccc--c-eeee-cCccc-cccCCC
Q 030404 116 VNRCSG--CRRKVGLT--G-FRCR-CGELF-CGEHRY 145 (178)
Q Consensus 116 ~~rC~~--C~kkvgl~--g-f~Cr-Cg~~F-C~~HRy 145 (178)
-..|.. |+|||-.. | |.|- |+..+ =-.|||
T Consensus 43 Y~aC~~~~CnKKv~~~~~g~~~CekC~~~~~~~~~ry 79 (181)
T 1l1o_C 43 YQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRM 79 (181)
T ss_dssp EEBCCSTTCCCBCEEETTTEEEETTTTEEESSCCEEE
T ss_pred ECCCCchhcCCccccCCCCeEECCCCCCcCCCceEEE
Confidence 457888 99999653 2 7894 88775 235666
No 69
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=31.85 E-value=13 Score=28.23 Aligned_cols=31 Identities=23% Similarity=0.582 Sum_probs=22.9
Q ss_pred cccCCccccccc----cccccceeee-cCccccccC
Q 030404 113 KRVVNRCSGCRR----KVGLTGFRCR-CGELFCGEH 143 (178)
Q Consensus 113 ~~~~~rC~~C~k----kvgl~gf~Cr-Cg~~FC~~H 143 (178)
+..+..|..|++ ++..--.+|+ ||.+|-+-=
T Consensus 57 q~akytCPfCGk~~vKR~avGIW~C~~Cgk~fAGGA 92 (116)
T 3cc2_Z 57 MNEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGS 92 (116)
T ss_dssp HHSCEECSSSCCEEEEEEETTEEEETTTCCEEECCS
T ss_pred hccCCcCCCCCCceeEecCceeEECCCCCCEEECCC
Confidence 456789999998 3332238998 999998763
No 70
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=31.82 E-value=17 Score=21.20 Aligned_cols=11 Identities=27% Similarity=0.588 Sum_probs=6.3
Q ss_pred CCccccccccc
Q 030404 116 VNRCSGCRRKV 126 (178)
Q Consensus 116 ~~rC~~C~kkv 126 (178)
+..|..|++..
T Consensus 4 ~~~C~~C~~~f 14 (57)
T 3uk3_C 4 SRECSYCGKFF 14 (57)
T ss_dssp -CBCTTTCCBC
T ss_pred CccCCCCcchh
Confidence 45677776654
No 71
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.60 E-value=18 Score=22.55 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=18.1
Q ss_pred CCccccccccccccceeeecCccccc
Q 030404 116 VNRCSGCRRKVGLTGFRCRCGELFCG 141 (178)
Q Consensus 116 ~~rC~~C~kkvgl~gf~CrCg~~FC~ 141 (178)
...|..|...+.- ...-.||++||.
T Consensus 20 ~~~C~IC~~~~~~-p~~~~CgH~fC~ 44 (63)
T 2ysj_A 20 EVICPICLDILQK-PVTIDCGHNFCL 44 (63)
T ss_dssp CCBCTTTCSBCSS-CEECTTSSEECH
T ss_pred CCCCCcCCchhCC-eEEeCCCCcchH
Confidence 4689999876543 344489999996
No 72
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=31.55 E-value=16 Score=24.85 Aligned_cols=26 Identities=27% Similarity=0.703 Sum_probs=18.8
Q ss_pred CCcccccccccccc---ceeeecCccccc
Q 030404 116 VNRCSGCRRKVGLT---GFRCRCGELFCG 141 (178)
Q Consensus 116 ~~rC~~C~kkvgl~---gf~CrCg~~FC~ 141 (178)
...|..|-..+.+. -+.|.||+.||.
T Consensus 11 ~~~CpICle~~~~~d~~~~p~~CGH~fC~ 39 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPCTCGYQICR 39 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSSTTSCCCCH
T ss_pred CCcCCccCccCccccccccccCCCCCcCH
Confidence 35688888876543 255889999995
No 73
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.49 E-value=15 Score=23.57 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=13.7
Q ss_pred CccccccccccccceeeecCccccccC
Q 030404 117 NRCSGCRRKVGLTGFRCRCGELFCGEH 143 (178)
Q Consensus 117 ~rC~~C~kkvgl~gf~CrCg~~FC~~H 143 (178)
-+|..|++.|....|.=+=|..||..|
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~c 60 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVERRAYCEGC 60 (72)
T ss_dssp CBCSSSCCBCTTSCEEESSSCEEEHHH
T ss_pred CcccccCCcCCcCcCEeeCCeEECHHH
Confidence 455566666644445444445555443
No 74
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=30.98 E-value=19 Score=21.36 Aligned_cols=11 Identities=27% Similarity=0.930 Sum_probs=6.6
Q ss_pred ceeee-cCcccc
Q 030404 130 GFRCR-CGELFC 140 (178)
Q Consensus 130 gf~Cr-Cg~~FC 140 (178)
.|.|. ||..|-
T Consensus 30 ~~~C~~C~~~f~ 41 (60)
T 2adr_A 30 PYPCGLCNRAFT 41 (60)
T ss_dssp SEECTTTCCEES
T ss_pred CccCCCCCCccC
Confidence 36775 666553
No 75
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.86 E-value=15 Score=23.88 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=12.7
Q ss_pred ccccccccccccceeeecCcccccc
Q 030404 118 RCSGCRRKVGLTGFRCRCGELFCGE 142 (178)
Q Consensus 118 rC~~C~kkvgl~gf~CrCg~~FC~~ 142 (178)
+|..|++.|....|.=+=|..||..
T Consensus 41 ~C~~C~~~L~~~~~~~~~g~~yC~~ 65 (77)
T 1g47_A 41 VCAQCFQQFPEGLFYEFEGRKYCEH 65 (77)
T ss_dssp CCTTTCCCCGGGCSEEETTEEECHH
T ss_pred eECCCCCCCCCCCeEeECCeEeCHH
Confidence 4555555555444544545555543
No 76
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.76 E-value=16 Score=23.53 Aligned_cols=27 Identities=19% Similarity=0.480 Sum_probs=17.8
Q ss_pred CccccccccccccceeeecCccccccC
Q 030404 117 NRCSGCRRKVGLTGFRCRCGELFCGEH 143 (178)
Q Consensus 117 ~rC~~C~kkvgl~gf~CrCg~~FC~~H 143 (178)
-+|..|++.|.-..|.=+=|..||..|
T Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~c 62 (72)
T 1x4l_A 36 FNCKKCSLSLVGRGFLTERDDILCPDC 62 (72)
T ss_dssp CBCSSSCCBCTTSCCEECSSSEECHHH
T ss_pred CEeccCCCcCCCCccEeECCEEEChhH
Confidence 467777777765556666667777544
No 77
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=30.44 E-value=14 Score=17.91 Aligned_cols=11 Identities=27% Similarity=1.014 Sum_probs=6.1
Q ss_pred eeee-cCccccc
Q 030404 131 FRCR-CGELFCG 141 (178)
Q Consensus 131 f~Cr-Cg~~FC~ 141 (178)
|+|. ||..|-.
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 4564 6666643
No 78
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.40 E-value=14 Score=24.80 Aligned_cols=13 Identities=15% Similarity=0.268 Sum_probs=10.1
Q ss_pred cCCcccccccccc
Q 030404 115 VVNRCSGCRRKVG 127 (178)
Q Consensus 115 ~~~rC~~C~kkvg 127 (178)
.+..|..|+|...
T Consensus 23 ~~~~C~~C~k~f~ 35 (98)
T 2gqj_A 23 GEAVCPTCNVVTR 35 (98)
T ss_dssp SCCCCTTTCCCCS
T ss_pred CCcCCCCCCCChh
Confidence 4678888888776
No 79
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=29.59 E-value=19 Score=24.52 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=9.0
Q ss_pred cCCccccccccc
Q 030404 115 VVNRCSGCRRKV 126 (178)
Q Consensus 115 ~~~rC~~C~kkv 126 (178)
.+..|..|+|..
T Consensus 33 ~~~~C~~C~k~F 44 (96)
T 2ctd_A 33 GSVSCPTCQAVG 44 (96)
T ss_dssp SCEECTTTCSCE
T ss_pred CCcCCCCCCCCc
Confidence 456888888776
No 80
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.34 E-value=17 Score=23.18 Aligned_cols=27 Identities=22% Similarity=0.508 Sum_probs=16.6
Q ss_pred CccccccccccccceeeecCccccccC
Q 030404 117 NRCSGCRRKVGLTGFRCRCGELFCGEH 143 (178)
Q Consensus 117 ~rC~~C~kkvgl~gf~CrCg~~FC~~H 143 (178)
-+|..|++.|....|.=+=|..||..|
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~c 60 (72)
T 1x4k_A 34 FICHRCQQPIGTKSFIPKDNQNFCVPC 60 (72)
T ss_dssp TCCSSSCCCCCSSSEEEETTEEEEHHH
T ss_pred CcccccCCccCCCccCccCCeEECHHH
Confidence 456677777665556556566666543
No 81
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=29.31 E-value=14 Score=26.32 Aligned_cols=14 Identities=29% Similarity=0.655 Sum_probs=10.6
Q ss_pred cceeeecCcccccc
Q 030404 129 TGFRCRCGELFCGE 142 (178)
Q Consensus 129 ~gf~CrCg~~FC~~ 142 (178)
.-+.||||..|--.
T Consensus 22 y~ypCrCGd~F~it 35 (83)
T 1yop_A 22 FTYPCPCGDRFQIY 35 (83)
T ss_dssp EEEEETTTEEEEEE
T ss_pred EEEeCCCCCeEEEC
Confidence 34889999988543
No 82
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=29.12 E-value=16 Score=17.94 Aligned_cols=11 Identities=36% Similarity=1.090 Sum_probs=6.9
Q ss_pred eeee-cCccccc
Q 030404 131 FRCR-CGELFCG 141 (178)
Q Consensus 131 f~Cr-Cg~~FC~ 141 (178)
|.|. ||..|-.
T Consensus 4 ~~C~~C~k~f~~ 15 (28)
T 2kvf_A 4 YSCSVCGKRFSL 15 (28)
T ss_dssp EECSSSCCEESC
T ss_pred ccCCCCCcccCC
Confidence 6665 7766654
No 83
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=29.07 E-value=23 Score=27.54 Aligned_cols=30 Identities=20% Similarity=0.515 Sum_probs=25.6
Q ss_pred cCCcccccccccccc---ceeee-cCccccccCC
Q 030404 115 VVNRCSGCRRKVGLT---GFRCR-CGELFCGEHR 144 (178)
Q Consensus 115 ~~~rC~~C~kkvgl~---gf~Cr-Cg~~FC~~HR 144 (178)
....|..|.+.+|++ |..|. |...+|..=+
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 568999999999986 68898 9999998655
No 84
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.05 E-value=30 Score=22.70 Aligned_cols=28 Identities=32% Similarity=0.770 Sum_probs=21.8
Q ss_pred CccccccccccccceeeecCccccccCC
Q 030404 117 NRCSGCRRKVGLTGFRCRCGELFCGEHR 144 (178)
Q Consensus 117 ~rC~~C~kkvgl~gf~CrCg~~FC~~HR 144 (178)
-+|..|++.|....|.=+=|..||..|-
T Consensus 44 F~C~~C~~~L~~~~f~~~~~~~~C~~c~ 71 (82)
T 2ehe_A 44 FRCCRCQRSLADEPFTCQDSELLCNDCY 71 (82)
T ss_dssp SBCTTTCCBCSSCCEEEETTEEEETTTS
T ss_pred CeecCCCCccCCCccEeeCCEEECHHHH
Confidence 5788888888766777777888887764
No 85
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=29.03 E-value=16 Score=24.56 Aligned_cols=40 Identities=23% Similarity=0.685 Sum_probs=25.2
Q ss_pred CCcccccccc-ccccceee-ecCccccccCCCCCCCCCCccc
Q 030404 116 VNRCSGCRRK-VGLTGFRC-RCGELFCGEHRYSDRHDCSYDY 155 (178)
Q Consensus 116 ~~rC~~C~kk-vgl~gf~C-rCg~~FC~~HRy~e~H~C~fDy 155 (178)
...|..|+.- ....-++| ||+..||+.-=|..--+|+=.|
T Consensus 11 ~~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k~Hk~Cse~F 52 (59)
T 1x4s_A 11 AGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTHGTCAENF 52 (59)
T ss_dssp CEEECSSCTTCCEEECEECTTTCCEESSHHHHHHHCCGGGGT
T ss_pred CCcCcCCCCCcCCCccccCcCCCCCccChHHHHHHhHhCHHH
Confidence 3579999852 23456999 6999999963332212565443
No 86
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=28.78 E-value=16 Score=17.92 Aligned_cols=10 Identities=30% Similarity=0.750 Sum_probs=5.9
Q ss_pred eeee-cCcccc
Q 030404 131 FRCR-CGELFC 140 (178)
Q Consensus 131 f~Cr-Cg~~FC 140 (178)
|.|. ||..|-
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvh_A 4 FSCSLCPQRSR 14 (27)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCcChhhC
Confidence 5665 666653
No 87
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=28.75 E-value=15 Score=18.04 Aligned_cols=10 Identities=40% Similarity=1.132 Sum_probs=5.8
Q ss_pred eeee-cCcccc
Q 030404 131 FRCR-CGELFC 140 (178)
Q Consensus 131 f~Cr-Cg~~FC 140 (178)
|.|. ||..|-
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 1ard_A 3 FVCEVCTRAFA 13 (29)
T ss_dssp CBCTTTCCBCS
T ss_pred eECCCCCcccC
Confidence 5565 666654
No 88
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=28.74 E-value=17 Score=22.60 Aligned_cols=26 Identities=23% Similarity=0.714 Sum_probs=15.9
Q ss_pred cCCccccccccccc--------------cceeee-cCcccc
Q 030404 115 VVNRCSGCRRKVGL--------------TGFRCR-CGELFC 140 (178)
Q Consensus 115 ~~~rC~~C~kkvgl--------------~gf~Cr-Cg~~FC 140 (178)
.+..|..|++.... ..|+|. |+..|-
T Consensus 13 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~ 53 (72)
T 1x6e_A 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFS 53 (72)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEES
T ss_pred CCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccC
Confidence 45678888775432 237776 666654
No 89
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=34.52 E-value=12 Score=18.23 Aligned_cols=12 Identities=33% Similarity=1.063 Sum_probs=7.6
Q ss_pred eeee-cCcccccc
Q 030404 131 FRCR-CGELFCGE 142 (178)
Q Consensus 131 f~Cr-Cg~~FC~~ 142 (178)
|.|. ||..|-..
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 5665 77777554
No 90
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=27.93 E-value=16 Score=17.88 Aligned_cols=10 Identities=40% Similarity=1.374 Sum_probs=6.3
Q ss_pred eeee-cCcccc
Q 030404 131 FRCR-CGELFC 140 (178)
Q Consensus 131 f~Cr-Cg~~FC 140 (178)
|.|. ||..|-
T Consensus 4 ~~C~~C~~~f~ 14 (30)
T 2m0d_A 4 YQCDYCGRSFS 14 (30)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCcccC
Confidence 5665 766664
No 91
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=27.86 E-value=21 Score=24.89 Aligned_cols=30 Identities=23% Similarity=0.584 Sum_probs=21.7
Q ss_pred cccCCccccccc-ccccc--c-eeee-cCcccccc
Q 030404 113 KRVVNRCSGCRR-KVGLT--G-FRCR-CGELFCGE 142 (178)
Q Consensus 113 ~~~~~rC~~C~k-kvgl~--g-f~Cr-Cg~~FC~~ 142 (178)
+..+..|..|+| +|.-. | -.|+ |+.+|=+-
T Consensus 24 q~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AGG 58 (73)
T 1ffk_W 24 HKKKYKCPVCGFPKLKRASTSIWVCGHCGYKIAGG 58 (73)
T ss_pred cccCccCCCCCCceeEEEEeEEEECCCCCcEEECC
Confidence 456789999997 33222 3 8898 99998765
No 92
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=27.54 E-value=16 Score=18.11 Aligned_cols=10 Identities=30% Similarity=0.753 Sum_probs=6.1
Q ss_pred eeee-cCcccc
Q 030404 131 FRCR-CGELFC 140 (178)
Q Consensus 131 f~Cr-Cg~~FC 140 (178)
|+|. ||..|-
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvg_A 4 YRCPLCRAGCP 14 (27)
T ss_dssp EEETTTTEEES
T ss_pred cCCCCCCcccC
Confidence 6665 666664
No 93
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=27.34 E-value=16 Score=17.77 Aligned_cols=10 Identities=50% Similarity=1.501 Sum_probs=6.2
Q ss_pred eeee-cCcccc
Q 030404 131 FRCR-CGELFC 140 (178)
Q Consensus 131 f~Cr-Cg~~FC 140 (178)
|.|. ||..|-
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2m0f_A 3 LKCRECGKQFT 13 (29)
T ss_dssp EECTTTSCEES
T ss_pred ccCCCCCCccC
Confidence 5665 666664
No 94
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=27.23 E-value=16 Score=26.44 Aligned_cols=12 Identities=33% Similarity=0.905 Sum_probs=9.6
Q ss_pred cceeeecCcccc
Q 030404 129 TGFRCRCGELFC 140 (178)
Q Consensus 129 ~gf~CrCg~~FC 140 (178)
.-+.||||..|-
T Consensus 22 y~ypCrCGd~F~ 33 (89)
T 2jr7_A 22 YFYPCPCGDNFS 33 (89)
T ss_dssp EEEECTTSSEEE
T ss_pred EEEcCCCCCEEE
Confidence 348899999883
No 95
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.06 E-value=20 Score=24.10 Aligned_cols=25 Identities=28% Similarity=0.632 Sum_probs=19.3
Q ss_pred cCCcccccccccc-c--cceeee-cCccc
Q 030404 115 VVNRCSGCRRKVG-L--TGFRCR-CGELF 139 (178)
Q Consensus 115 ~~~rC~~C~kkvg-l--~gf~Cr-Cg~~F 139 (178)
.+..|..|++.|- | .|++|+ |+.++
T Consensus 27 ~pt~C~~C~~~lwGl~kqG~~C~~C~~~~ 55 (74)
T 2db6_A 27 KPKFCDVCARMIVLNNKFGLRCKNCKTNI 55 (74)
T ss_dssp SCEECSSSCCEECHHHHEEEEESSSCCEE
T ss_pred CCcCchhcChhhccccCCccccCCCCCcc
Confidence 5789999999873 3 489998 87654
No 96
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.00 E-value=20 Score=22.86 Aligned_cols=27 Identities=30% Similarity=0.609 Sum_probs=16.9
Q ss_pred CccccccccccccceeeecCccccccC
Q 030404 117 NRCSGCRRKVGLTGFRCRCGELFCGEH 143 (178)
Q Consensus 117 ~rC~~C~kkvgl~gf~CrCg~~FC~~H 143 (178)
-+|..|++.|....|.=+=|..||..|
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~c 60 (72)
T 1wyh_A 34 FLCSGCEQPLGSRSFVPDKGAHYCVPC 60 (72)
T ss_dssp CBCTTTCCBTTTSCEEEETTEEEEHHH
T ss_pred CeECCCCCcCCCCccCCcCCeEECHHH
Confidence 466677777766556655566666543
No 97
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.97 E-value=11 Score=24.89 Aligned_cols=25 Identities=16% Similarity=0.541 Sum_probs=11.4
Q ss_pred ccccccccccccceeeecCcccccc
Q 030404 118 RCSGCRRKVGLTGFRCRCGELFCGE 142 (178)
Q Consensus 118 rC~~C~kkvgl~gf~CrCg~~FC~~ 142 (178)
+|..|++.|....|.=+=|..||..
T Consensus 43 ~C~~C~~~L~~~~~~~~~g~~yC~~ 67 (79)
T 1x62_A 43 VCTDCGTNLKQKGHFFVEDQIYCEK 67 (79)
T ss_dssp SCSSSCCCHHHHCCEESSSCEECHH
T ss_pred eeCCCCCCCCCCCeEeECCEEECHH
Confidence 4445555554333444444444433
No 98
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=26.93 E-value=29 Score=26.30 Aligned_cols=31 Identities=29% Similarity=0.692 Sum_probs=25.2
Q ss_pred ccCCcccccccccccc---ceeee-cCccccccCC
Q 030404 114 RVVNRCSGCRRKVGLT---GFRCR-CGELFCGEHR 144 (178)
Q Consensus 114 ~~~~rC~~C~kkvgl~---gf~Cr-Cg~~FC~~HR 144 (178)
.....|..|.+.+|++ |..|. |...+|..=+
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 4568899999999975 67897 9999998544
No 99
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=26.86 E-value=20 Score=23.65 Aligned_cols=25 Identities=24% Similarity=0.573 Sum_probs=12.8
Q ss_pred ccccccccccccceeeecCcccccc
Q 030404 118 RCSGCRRKVGLTGFRCRCGELFCGE 142 (178)
Q Consensus 118 rC~~C~kkvgl~gf~CrCg~~FC~~ 142 (178)
+|..|++.|....|.=+=|..||..
T Consensus 36 ~C~~C~~~L~~~~~~~~~~~~yC~~ 60 (81)
T 1a7i_A 36 LCMVCRKNLDSTTVAIHDAEVYCKS 60 (81)
T ss_dssp ECSSSCCEECSSCCEEETTEEECSH
T ss_pred ccCCCCCCCCCCCeEeeCCEEECHH
Confidence 4555666555444444444455543
No 100
>1e0f_I Haemadin, factor IIA; coagulation//heparin-B, coagulation/crystal structure/heparin-binding site/ hirudin/thrombin inhibitor; 3.1A {Haemadipsa sylvestris} SCOP: g.3.15.2
Probab=26.79 E-value=36 Score=22.24 Aligned_cols=30 Identities=37% Similarity=0.730 Sum_probs=22.0
Q ss_pred cccceeeecCccccccCCCCCCCCCCccch
Q 030404 127 GLTGFRCRCGELFCGEHRYSDRHDCSYDYK 156 (178)
Q Consensus 127 gl~gf~CrCg~~FC~~HRy~e~H~C~fDyk 156 (178)
|-.|+.|.||...|---.--....|+-|-|
T Consensus 13 gevgytcdcgekiclygqscndgqcsgdpk 42 (57)
T 1e0f_I 13 GEVGYTCDCGEKICLYGQSCNDGQCSGDPK 42 (57)
T ss_dssp SSCSSCEECSSSEECTTCCBSSSCBCSCCC
T ss_pred CceeeeccCCceeeEecccccCCcccCCCC
Confidence 445788999988887666666777877744
No 101
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=26.62 E-value=16 Score=17.85 Aligned_cols=10 Identities=20% Similarity=0.730 Sum_probs=5.5
Q ss_pred eeee-cCcccc
Q 030404 131 FRCR-CGELFC 140 (178)
Q Consensus 131 f~Cr-Cg~~FC 140 (178)
|.|. ||..|-
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1klr_A 3 YQCQYCEFRSA 13 (30)
T ss_dssp CCCSSSSCCCS
T ss_pred ccCCCCCCccC
Confidence 5554 665554
No 102
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.44 E-value=22 Score=22.53 Aligned_cols=26 Identities=23% Similarity=0.439 Sum_probs=18.5
Q ss_pred CCccccccccccccceeeecCcccccc
Q 030404 116 VNRCSGCRRKVGLTGFRCRCGELFCGE 142 (178)
Q Consensus 116 ~~rC~~C~kkvgl~gf~CrCg~~FC~~ 142 (178)
...|..|...+.- ...-.||++||..
T Consensus 20 ~~~C~IC~~~~~~-~~~~~CgH~fC~~ 45 (73)
T 2ysl_A 20 EVICPICLDILQK-PVTIDCGHNFCLK 45 (73)
T ss_dssp CCBCTTTCSBCSS-EEECTTCCEEEHH
T ss_pred CCEeccCCcccCC-eEEcCCCChhhHH
Confidence 4689999876543 2344899999963
No 103
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=26.35 E-value=19 Score=25.42 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=24.1
Q ss_pred cccCCccccccccccc---c-ceeee-cCccccccCCCC
Q 030404 113 KRVVNRCSGCRRKVGL---T-GFRCR-CGELFCGEHRYS 146 (178)
Q Consensus 113 ~~~~~rC~~C~kkvgl---~-gf~Cr-Cg~~FC~~HRy~ 146 (178)
+.....|..|++.+-. + -.+|+ ||.+|-+-=-.|
T Consensus 24 q~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~aggay~~ 62 (83)
T 1vq8_Z 24 MNEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSYKP 62 (83)
T ss_dssp HHSCEECSSSCCEEEEEEETTEEEETTTCCEEECCSSSS
T ss_pred ccccCcCCCCCCcceeccCCCeEECCCCCCEecCCEecc
Confidence 3457899999985432 1 38998 999998864433
No 104
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.09 E-value=17 Score=17.57 Aligned_cols=11 Identities=27% Similarity=0.851 Sum_probs=6.8
Q ss_pred eeee-cCccccc
Q 030404 131 FRCR-CGELFCG 141 (178)
Q Consensus 131 f~Cr-Cg~~FC~ 141 (178)
|.|. ||..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 2m0e_A 3 HKCPHCDKKFNQ 14 (29)
T ss_dssp CCCSSCCCCCCT
T ss_pred CcCCCCCcccCC
Confidence 5665 7766654
No 105
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.05 E-value=29 Score=22.45 Aligned_cols=25 Identities=24% Similarity=0.596 Sum_probs=16.4
Q ss_pred CccccccccccccceeeecCccccc
Q 030404 117 NRCSGCRRKVGLTGFRCRCGELFCG 141 (178)
Q Consensus 117 ~rC~~C~kkvgl~gf~CrCg~~FC~ 141 (178)
-+|..|++.|....|.=+=|..||.
T Consensus 37 F~C~~C~~~L~~~~~~~~~g~~yC~ 61 (76)
T 2cu8_A 37 LKCERCSKTLTPGGHAEHDGKPFCH 61 (76)
T ss_dssp CBCSSSCCBCCTTSCEEETTEEECT
T ss_pred CCCCCCCCccCCCceEeECCEEecc
Confidence 4677777777655566566666665
No 106
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.05 E-value=23 Score=18.25 Aligned_cols=11 Identities=36% Similarity=1.023 Sum_probs=5.8
Q ss_pred ceeee-cCcccc
Q 030404 130 GFRCR-CGELFC 140 (178)
Q Consensus 130 gf~Cr-Cg~~FC 140 (178)
.|.|. ||..|-
T Consensus 7 ~~~C~~C~k~f~ 18 (35)
T 2elx_A 7 GYVCALCLKKFV 18 (35)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCCCcchhC
Confidence 35564 555553
No 107
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=25.98 E-value=17 Score=18.00 Aligned_cols=11 Identities=27% Similarity=0.957 Sum_probs=6.7
Q ss_pred eeee-cCccccc
Q 030404 131 FRCR-CGELFCG 141 (178)
Q Consensus 131 f~Cr-Cg~~FC~ 141 (178)
|.|. ||..|-.
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1paa_A 3 YACGLCNRAFTR 14 (30)
T ss_dssp SBCTTTCCBCSS
T ss_pred cCCcccCcccCC
Confidence 5665 7766654
No 108
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=25.90 E-value=30 Score=24.52 Aligned_cols=37 Identities=22% Similarity=0.508 Sum_probs=22.9
Q ss_pred cCCccccccccccccceee-ecCccccccC--CCCCCCCCCc
Q 030404 115 VVNRCSGCRRKVGLTGFRC-RCGELFCGEH--RYSDRHDCSY 153 (178)
Q Consensus 115 ~~~rC~~C~kkvgl~gf~C-rCg~~FC~~H--Ry~e~H~C~f 153 (178)
....|..|..-+.- ...- .||++||..- ++-. ..|+.
T Consensus 21 ~~~~C~IC~~~~~~-pv~~~~CgH~fC~~Ci~~~~~-~~CP~ 60 (117)
T 1jm7_B 21 KLLRCSRCTNILRE-PVCLGGCEHIFCSNCVSDCIG-TGCPV 60 (117)
T ss_dssp HTTSCSSSCSCCSS-CBCCCSSSCCBCTTTGGGGTT-TBCSS
T ss_pred hCCCCCCCChHhhC-ccEeCCCCCHHHHHHHHHHhc-CCCcC
Confidence 35789999765533 3444 8999999643 2322 45654
No 109
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.89 E-value=24 Score=18.58 Aligned_cols=11 Identities=27% Similarity=0.993 Sum_probs=5.8
Q ss_pred ceeee-cCcccc
Q 030404 130 GFRCR-CGELFC 140 (178)
Q Consensus 130 gf~Cr-Cg~~FC 140 (178)
.|.|. ||..|-
T Consensus 9 ~~~C~~C~k~f~ 20 (37)
T 2elo_A 9 SYSCPVCEKSFS 20 (37)
T ss_dssp CCEETTTTEECS
T ss_pred CcCCCCCCCccC
Confidence 35564 555553
No 110
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.69 E-value=31 Score=24.25 Aligned_cols=31 Identities=29% Similarity=0.756 Sum_probs=25.5
Q ss_pred cCCcccccccccccc---ceeee-cCccccccCCC
Q 030404 115 VVNRCSGCRRKVGLT---GFRCR-CGELFCGEHRY 145 (178)
Q Consensus 115 ~~~rC~~C~kkvgl~---gf~Cr-Cg~~FC~~HRy 145 (178)
..++|..|.+.+|++ |..|+ |-..-|..-|-
T Consensus 24 ~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv 58 (76)
T 2csz_A 24 SDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRI 58 (76)
T ss_dssp CCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEE
T ss_pred CccchhhhCccccccccCCCcCcccChhhcccccc
Confidence 468999999999996 68898 98877776664
No 111
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.58 E-value=22 Score=24.02 Aligned_cols=11 Identities=18% Similarity=0.706 Sum_probs=7.2
Q ss_pred CCccccccccc
Q 030404 116 VNRCSGCRRKV 126 (178)
Q Consensus 116 ~~rC~~C~kkv 126 (178)
..+|..|++.|
T Consensus 25 ~~~C~~C~~~I 35 (90)
T 2dar_A 25 TPMCAHCNQVI 35 (90)
T ss_dssp CCBBSSSCCBC
T ss_pred CCCCccCCCEe
Confidence 45677777765
No 112
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.33 E-value=22 Score=23.30 Aligned_cols=27 Identities=22% Similarity=0.614 Sum_probs=18.9
Q ss_pred CccccccccccccceeeecCccccccC
Q 030404 117 NRCSGCRRKVGLTGFRCRCGELFCGEH 143 (178)
Q Consensus 117 ~rC~~C~kkvgl~gf~CrCg~~FC~~H 143 (178)
-+|..|++.|....|.=+=|..||..|
T Consensus 44 F~C~~C~~~L~~~~~~~~~~~~yC~~c 70 (82)
T 1x63_A 44 FTCSNCKQVIGTGSFFPKGEDFYCVTC 70 (82)
T ss_dssp CCCSSSCCCCTTSCEEEETTEEEEHHH
T ss_pred CchhhCCCccCCCccEeeCCEEECHHH
Confidence 567788888776666666677777554
No 113
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.14 E-value=22 Score=22.58 Aligned_cols=26 Identities=23% Similarity=0.545 Sum_probs=14.2
Q ss_pred CccccccccccccceeeecCcccccc
Q 030404 117 NRCSGCRRKVGLTGFRCRCGELFCGE 142 (178)
Q Consensus 117 ~rC~~C~kkvgl~gf~CrCg~~FC~~ 142 (178)
-+|..|++.|....|.=+=|..||..
T Consensus 32 F~C~~C~~~L~~~~~~~~~~~~yC~~ 57 (70)
T 2d8z_A 32 FVCTACRKQLSGQRFTARDDFAYCLN 57 (70)
T ss_dssp SBCSSSCCBCTTSCCEESSSSEECHH
T ss_pred CccCCCCCcCCcCceEeeCCeEECHH
Confidence 45666777665444544444555543
No 114
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=25.11 E-value=31 Score=21.56 Aligned_cols=27 Identities=22% Similarity=0.752 Sum_probs=17.3
Q ss_pred cCCccccccccccc--------------cceeee-cCccccc
Q 030404 115 VVNRCSGCRRKVGL--------------TGFRCR-CGELFCG 141 (178)
Q Consensus 115 ~~~rC~~C~kkvgl--------------~gf~Cr-Cg~~FC~ 141 (178)
.+..|..|++.... ..|.|. ||..|-.
T Consensus 17 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 58 (77)
T 2cot_A 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQ 58 (77)
T ss_dssp CSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESS
T ss_pred CCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCC
Confidence 46788888876542 137786 7766643
No 115
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=25.08 E-value=26 Score=18.47 Aligned_cols=9 Identities=44% Similarity=1.331 Sum_probs=4.1
Q ss_pred eeee-cCccc
Q 030404 131 FRCR-CGELF 139 (178)
Q Consensus 131 f~Cr-Cg~~F 139 (178)
|+|. ||..|
T Consensus 12 ~~C~~C~k~f 21 (37)
T 1p7a_A 12 FQCPDCDRSF 21 (37)
T ss_dssp BCCTTTCCCB
T ss_pred ccCCCCCccc
Confidence 4443 44444
No 116
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.55 E-value=23 Score=21.82 Aligned_cols=12 Identities=25% Similarity=0.620 Sum_probs=7.9
Q ss_pred cCCccccccccc
Q 030404 115 VVNRCSGCRRKV 126 (178)
Q Consensus 115 ~~~rC~~C~kkv 126 (178)
.+..|..|++..
T Consensus 8 ~~~~C~~C~k~f 19 (70)
T 1x5w_A 8 HPEKCSECSYSC 19 (70)
T ss_dssp CSEECSSSSCEE
T ss_pred CCeECCCCCccc
Confidence 356777887654
No 117
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=24.39 E-value=19 Score=25.58 Aligned_cols=12 Identities=33% Similarity=0.916 Sum_probs=9.5
Q ss_pred cceeeecCcccc
Q 030404 129 TGFRCRCGELFC 140 (178)
Q Consensus 129 ~gf~CrCg~~FC 140 (178)
.-+.||||..|-
T Consensus 29 y~y~CrCGd~F~ 40 (83)
T 1wge_A 29 YFYPCPCGDNFA 40 (83)
T ss_dssp EEECCSSSSCEE
T ss_pred EEEeCCCCCEEE
Confidence 348899999883
No 118
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=24.38 E-value=26 Score=18.19 Aligned_cols=11 Identities=45% Similarity=0.975 Sum_probs=5.9
Q ss_pred ceeee-cCcccc
Q 030404 130 GFRCR-CGELFC 140 (178)
Q Consensus 130 gf~Cr-Cg~~FC 140 (178)
.|.|. ||..|-
T Consensus 7 ~~~C~~C~k~f~ 18 (35)
T 1srk_A 7 PFVCRICLSAFT 18 (35)
T ss_dssp CEECSSSCCEES
T ss_pred CeeCCCCCcccC
Confidence 35564 555553
No 119
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=24.23 E-value=22 Score=17.42 Aligned_cols=11 Identities=36% Similarity=0.938 Sum_probs=6.5
Q ss_pred eeee-cCccccc
Q 030404 131 FRCR-CGELFCG 141 (178)
Q Consensus 131 f~Cr-Cg~~FC~ 141 (178)
|.|. ||..|-.
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 1rik_A 3 FACPECPKRFMR 14 (29)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 5665 6666643
No 120
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.02 E-value=35 Score=21.90 Aligned_cols=26 Identities=23% Similarity=0.540 Sum_probs=18.4
Q ss_pred CCccccccccccccceeeecCcccccc
Q 030404 116 VNRCSGCRRKVGLTGFRCRCGELFCGE 142 (178)
Q Consensus 116 ~~rC~~C~kkvgl~gf~CrCg~~FC~~ 142 (178)
...|..|...+.- ...-.||++||..
T Consensus 19 ~~~C~IC~~~~~~-p~~~~CgH~fC~~ 44 (85)
T 2ecv_A 19 EVTCPICLELLTQ-PLSLDCGHSFCQA 44 (85)
T ss_dssp CCCCTTTCSCCSS-CBCCSSSCCBCTT
T ss_pred CCCCCCCCcccCC-ceeCCCCCHHHHH
Confidence 4689999876543 2344799999964
No 121
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.99 E-value=21 Score=24.21 Aligned_cols=27 Identities=33% Similarity=0.771 Sum_probs=13.8
Q ss_pred CccccccccccccceeeecCccccccC
Q 030404 117 NRCSGCRRKVGLTGFRCRCGELFCGEH 143 (178)
Q Consensus 117 ~rC~~C~kkvgl~gf~CrCg~~FC~~H 143 (178)
-+|..|++.|....|.=+=|..||..|
T Consensus 43 F~C~~C~~~L~~~~~~~~~g~~yC~~~ 69 (91)
T 2d8y_A 43 FRCSYCNNKLSLGTYASLHGRIYCKPH 69 (91)
T ss_dssp CBCTTTCCBCCTTTCCCSSSCCCCHHH
T ss_pred CeeCCCCCCCCCCCcEeECCEEECHHH
Confidence 345566665554444444455555443
No 122
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=29.75 E-value=16 Score=18.06 Aligned_cols=12 Identities=33% Similarity=0.938 Sum_probs=7.7
Q ss_pred eeee-cCcccccc
Q 030404 131 FRCR-CGELFCGE 142 (178)
Q Consensus 131 f~Cr-Cg~~FC~~ 142 (178)
|.|. ||..|-..
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 2lvt_A 3 CQCVMCGKAFTQA 15 (29)
Confidence 6676 77777543
No 123
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=23.94 E-value=22 Score=24.25 Aligned_cols=27 Identities=22% Similarity=0.591 Sum_probs=18.6
Q ss_pred cCCcccccccccccc--------------ceeee-cCccccc
Q 030404 115 VVNRCSGCRRKVGLT--------------GFRCR-CGELFCG 141 (178)
Q Consensus 115 ~~~rC~~C~kkvgl~--------------gf~Cr-Cg~~FC~ 141 (178)
.+-.|..|+|..... .|.|. ||..|-.
T Consensus 27 ~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 27 ECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYS 68 (85)
T ss_dssp TTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESS
T ss_pred CCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCC
Confidence 356799998865431 38996 8888854
No 124
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.54 E-value=19 Score=23.05 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=28.5
Q ss_pred cCCccccccccccccceeeecCccccccC---CCCCCCCCCccchHhhHHHH
Q 030404 115 VVNRCSGCRRKVGLTGFRCRCGELFCGEH---RYSDRHDCSYDYKSAGRDAI 163 (178)
Q Consensus 115 ~~~rC~~C~kkvgl~gf~CrCg~~FC~~H---Ry~e~H~C~fDyk~~~r~~l 163 (178)
....|..|...+.. ...-.||++||..= .+.....|.+--+...++.|
T Consensus 14 ~~~~C~IC~~~~~~-~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 14 TVPECAICLQTCVH-PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFL 64 (71)
T ss_dssp SCCBCSSSSSBCSS-EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHH
T ss_pred CCCCCccCCcccCC-CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhc
Confidence 34689999876533 34457999998632 12334567765554444443
No 125
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.46 E-value=34 Score=17.74 Aligned_cols=9 Identities=22% Similarity=0.874 Sum_probs=4.6
Q ss_pred eeee-cCccc
Q 030404 131 FRCR-CGELF 139 (178)
Q Consensus 131 f~Cr-Cg~~F 139 (178)
|.|. ||..|
T Consensus 10 ~~C~~C~k~f 19 (36)
T 2elt_A 10 YKCPQCSYAS 19 (36)
T ss_dssp EECSSSSCEE
T ss_pred CCCCCCCccc
Confidence 5554 55544
No 126
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.31 E-value=34 Score=17.99 Aligned_cols=12 Identities=25% Similarity=0.780 Sum_probs=6.8
Q ss_pred ceeee-cCccccc
Q 030404 130 GFRCR-CGELFCG 141 (178)
Q Consensus 130 gf~Cr-Cg~~FC~ 141 (178)
.|+|. ||..|-.
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elp_A 9 AMKCPYCDFYFMK 21 (37)
T ss_dssp CEECSSSSCEECS
T ss_pred CeECCCCChhhcc
Confidence 36665 6666643
No 127
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=22.13 E-value=26 Score=22.63 Aligned_cols=27 Identities=15% Similarity=0.470 Sum_probs=17.5
Q ss_pred CccccccccccccceeeecCccccccC
Q 030404 117 NRCSGCRRKVGLTGFRCRCGELFCGEH 143 (178)
Q Consensus 117 ~rC~~C~kkvgl~gf~CrCg~~FC~~H 143 (178)
-+|..|++.|.-..|.=+=|..||..|
T Consensus 47 F~C~~C~~~L~~~~f~~~~~~~yC~~c 73 (77)
T 2egq_A 47 FHCKKCSVNLANKRFVFHQEQVYCPDC 73 (77)
T ss_dssp CBCSSSCCBCTTSCCCEETTEECCHHH
T ss_pred CEehhcCCCCCCCccEeECCEEEChHH
Confidence 467778877765556656666676543
No 128
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=21.78 E-value=32 Score=24.03 Aligned_cols=24 Identities=17% Similarity=0.421 Sum_probs=17.0
Q ss_pred CccccccccccccceeeecCccccc
Q 030404 117 NRCSGCRRKVGLTGFRCRCGELFCG 141 (178)
Q Consensus 117 ~rC~~C~kkvgl~gf~CrCg~~FC~ 141 (178)
..|..|...+.- ...-.||++||.
T Consensus 16 ~~C~iC~~~~~~-p~~~~CgH~fC~ 39 (115)
T 3l11_A 16 CQCGICMEILVE-PVTLPCNHTLCK 39 (115)
T ss_dssp HBCTTTCSBCSS-CEECTTSCEECH
T ss_pred CCCccCCcccCc-eeEcCCCCHHhH
Confidence 579999865532 233479999996
No 129
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=21.50 E-value=23 Score=31.08 Aligned_cols=30 Identities=37% Similarity=0.940 Sum_probs=21.3
Q ss_pred CCcccc--cccccccc--c-eeee-cCccc-cccCCC
Q 030404 116 VNRCSG--CRRKVGLT--G-FRCR-CGELF-CGEHRY 145 (178)
Q Consensus 116 ~~rC~~--C~kkvgl~--g-f~Cr-Cg~~F-C~~HRy 145 (178)
-..|.. |+|||-.. | |.|. |+..+ =..|||
T Consensus 308 Y~aC~~~~C~kkv~~~~~g~~~C~~C~~~~~~~~~ry 344 (444)
T 4gop_C 308 YTACASEGCNKKVNLDHENNWRCEKCDRSYATPEYRY 344 (444)
T ss_dssp EEECCSTTCCCBEEECTTSCEEETTTTEEESSCEEEE
T ss_pred EccCCcccCCCccccCCCccEECCCCCCcCccccEEE
Confidence 368988 99999653 3 8895 87664 345666
No 130
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.40 E-value=25 Score=18.45 Aligned_cols=12 Identities=33% Similarity=0.780 Sum_probs=7.2
Q ss_pred ceeee-cCccccc
Q 030404 130 GFRCR-CGELFCG 141 (178)
Q Consensus 130 gf~Cr-Cg~~FC~ 141 (178)
.|.|. ||..|-.
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2els_A 9 IFTCEYCNKVFKF 21 (36)
T ss_dssp CEECTTTCCEESS
T ss_pred CEECCCCCceeCC
Confidence 36665 6666643
No 131
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.16 E-value=33 Score=17.95 Aligned_cols=11 Identities=27% Similarity=0.779 Sum_probs=5.9
Q ss_pred ceeee-cCcccc
Q 030404 130 GFRCR-CGELFC 140 (178)
Q Consensus 130 gf~Cr-Cg~~FC 140 (178)
.|.|. ||..|-
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2elv_A 9 LYDCHICERKFK 20 (36)
T ss_dssp CEECSSSCCEES
T ss_pred CeECCCCCCccC
Confidence 35565 555553
No 132
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.83 E-value=30 Score=22.51 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=17.9
Q ss_pred CccccccccccccceeeecCccccccC
Q 030404 117 NRCSGCRRKVGLTGFRCRCGELFCGEH 143 (178)
Q Consensus 117 ~rC~~C~kkvgl~gf~CrCg~~FC~~H 143 (178)
-+|..|++.|....|.=+=|..||..|
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~yC~~~ 68 (80)
T 1x3h_A 42 FVCGDCFTSFSTGSFFELDGRPFCELH 68 (80)
T ss_dssp CBCSSSCCBSCSSCCEESSSCEECHHH
T ss_pred CChhhCCCCCCCCcEEeECCEEECHHH
Confidence 567788887765556556666666554
No 133
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=26.20 E-value=21 Score=17.57 Aligned_cols=12 Identities=25% Similarity=0.794 Sum_probs=7.6
Q ss_pred eeee-cCcccccc
Q 030404 131 FRCR-CGELFCGE 142 (178)
Q Consensus 131 f~Cr-Cg~~FC~~ 142 (178)
|.|. ||..|-..
T Consensus 4 ~~C~~C~k~f~~~ 16 (30)
T 2lvr_A 4 YVCIHCQRQFADP 16 (30)
Confidence 6665 77777543
No 134
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=20.54 E-value=35 Score=23.42 Aligned_cols=18 Identities=22% Similarity=0.519 Sum_probs=14.9
Q ss_pred ceeee-cCccccccCCCCC
Q 030404 130 GFRCR-CGELFCGEHRYSD 147 (178)
Q Consensus 130 gf~Cr-Cg~~FC~~HRy~e 147 (178)
...|. ||..||..++.+-
T Consensus 43 ~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 43 EATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CEECTTTCCEECSSSCSBC
T ss_pred ceEeCCCCCccccccCCch
Confidence 47895 9999999999753
No 135
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.51 E-value=36 Score=18.16 Aligned_cols=12 Identities=17% Similarity=0.293 Sum_probs=7.1
Q ss_pred ceeee-cCccccc
Q 030404 130 GFRCR-CGELFCG 141 (178)
Q Consensus 130 gf~Cr-Cg~~FC~ 141 (178)
.|+|. ||..|-.
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elm_A 9 LYYCSQCHYSSIT 21 (37)
T ss_dssp EEECSSSSCEEEC
T ss_pred CeECCCCCcccCC
Confidence 36665 6666643
No 136
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=20.47 E-value=30 Score=23.66 Aligned_cols=23 Identities=35% Similarity=0.986 Sum_probs=18.0
Q ss_pred cCCcccccccccccc---ceeee-cCc
Q 030404 115 VVNRCSGCRRKVGLT---GFRCR-CGE 137 (178)
Q Consensus 115 ~~~rC~~C~kkvgl~---gf~Cr-Cg~ 137 (178)
-...|..|+..+.+. ...|+ ||.
T Consensus 27 v~Y~C~~CG~~~e~~~~d~irCp~CG~ 53 (70)
T 1twf_L 27 LKYICAECSSKLSLSRTDAVRCKDCGH 53 (70)
T ss_dssp CCEECSSSCCEECCCTTSTTCCSSSCC
T ss_pred EEEECCCCCCcceeCCCCCccCCCCCc
Confidence 457999999997774 47887 876
Done!