Query 030405
Match_columns 178
No_of_seqs 115 out of 1761
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 13:14:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030405.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030405hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.9 9.5E-22 2.1E-26 137.1 15.3 131 36-173 8-139 (160)
2 KOG0044 Ca2+ sensor (EF-Hand s 99.9 1E-21 2.2E-26 141.4 14.3 148 20-177 6-158 (193)
3 KOG0034 Ca2+/calmodulin-depend 99.9 2.7E-20 5.8E-25 133.9 15.5 153 16-177 1-158 (187)
4 KOG0027 Calmodulin and related 99.8 7.5E-18 1.6E-22 118.6 14.3 126 42-173 2-132 (151)
5 KOG0038 Ca2+-binding kinase in 99.8 8.4E-18 1.8E-22 113.7 10.1 154 16-177 1-160 (189)
6 PTZ00183 centrin; Provisional 99.7 4.2E-16 9E-21 110.0 15.9 125 41-171 10-135 (158)
7 KOG0028 Ca2+-binding protein ( 99.7 2.4E-16 5.2E-21 108.2 13.7 130 40-175 25-155 (172)
8 PTZ00184 calmodulin; Provision 99.7 6.1E-16 1.3E-20 108.0 15.5 125 41-171 4-129 (149)
9 KOG0031 Myosin regulatory ligh 99.6 4.1E-14 8.8E-19 96.7 14.0 120 42-171 26-146 (171)
10 COG5126 FRQ1 Ca2+-binding prot 99.6 1.6E-13 3.5E-18 95.9 12.6 135 6-150 20-156 (160)
11 PLN02964 phosphatidylserine de 99.5 4.1E-13 8.9E-18 112.4 14.2 114 30-150 123-243 (644)
12 KOG0037 Ca2+-binding protein, 99.5 6.7E-13 1.5E-17 95.9 12.0 113 47-172 56-170 (221)
13 KOG0027 Calmodulin and related 99.5 9.5E-13 2.1E-17 92.6 12.0 134 7-149 9-148 (151)
14 KOG0030 Myosin essential light 99.4 2.8E-12 6E-17 86.4 11.1 123 41-169 4-131 (152)
15 KOG0044 Ca2+ sensor (EF-Hand s 99.4 1.1E-12 2.3E-17 94.8 8.6 127 17-150 38-175 (193)
16 KOG0036 Predicted mitochondria 99.4 6.4E-12 1.4E-16 98.4 13.0 123 42-176 8-132 (463)
17 PTZ00183 centrin; Provisional 99.4 8.4E-12 1.8E-16 87.9 12.3 133 7-150 18-154 (158)
18 PTZ00184 calmodulin; Provision 99.4 2.2E-11 4.7E-16 84.8 11.8 134 6-148 11-146 (149)
19 KOG0028 Ca2+-binding protein ( 99.2 8.5E-10 1.9E-14 76.2 11.7 116 31-150 53-170 (172)
20 KOG0034 Ca2+/calmodulin-depend 99.1 1.3E-09 2.8E-14 78.8 10.6 96 53-150 71-175 (187)
21 PF13499 EF-hand_7: EF-hand do 99.1 2.9E-10 6.2E-15 68.6 6.0 62 87-148 2-66 (66)
22 KOG0037 Ca2+-binding protein, 99.1 2.8E-09 6E-14 77.3 10.5 82 47-137 123-205 (221)
23 smart00027 EH Eps15 homology d 98.9 1.8E-08 3.9E-13 65.4 8.9 68 42-112 4-71 (96)
24 cd05022 S-100A13 S-100A13: S-1 98.9 1.3E-08 2.9E-13 64.9 8.0 64 47-112 7-74 (89)
25 PF13499 EF-hand_7: EF-hand do 98.9 1E-08 2.2E-13 61.8 7.1 61 49-111 1-66 (66)
26 KOG4223 Reticulocalbin, calume 98.9 2.6E-08 5.7E-13 76.2 10.0 103 44-148 159-267 (325)
27 cd05022 S-100A13 S-100A13: S-1 98.8 2.7E-08 5.8E-13 63.5 7.8 66 87-153 10-78 (89)
28 cd05026 S-100Z S-100Z: S-100Z 98.8 4.7E-08 1E-12 63.1 8.7 67 46-114 8-82 (93)
29 KOG0036 Predicted mitochondria 98.8 1.4E-07 3E-12 74.5 12.0 130 8-149 16-145 (463)
30 cd05027 S-100B S-100B: S-100B 98.8 8.5E-08 1.8E-12 61.2 8.6 63 47-111 7-77 (88)
31 cd00051 EFh EF-hand, calcium b 98.7 9.2E-08 2E-12 55.9 7.8 61 87-148 2-62 (63)
32 cd05027 S-100B S-100B: S-100B 98.7 1.1E-07 2.3E-12 60.7 8.4 66 87-153 10-82 (88)
33 PF00036 EF-hand_1: EF hand; 98.7 2E-08 4.4E-13 50.3 3.7 28 123-150 1-28 (29)
34 PF13833 EF-hand_8: EF-hand do 98.7 8.2E-08 1.8E-12 55.5 6.8 50 99-149 2-52 (54)
35 smart00027 EH Eps15 homology d 98.7 1.3E-07 2.8E-12 61.4 8.5 73 86-161 11-84 (96)
36 cd00052 EH Eps15 homology doma 98.7 1.3E-07 2.8E-12 56.8 7.9 61 88-151 2-62 (67)
37 cd00213 S-100 S-100: S-100 dom 98.7 1.2E-07 2.6E-12 60.4 7.9 69 44-114 4-80 (88)
38 cd00052 EH Eps15 homology doma 98.7 1.6E-07 3.6E-12 56.4 7.3 61 51-114 2-62 (67)
39 cd05023 S-100A11 S-100A11: S-1 98.7 2.4E-07 5.2E-12 59.2 8.3 68 45-114 6-81 (89)
40 cd05026 S-100Z S-100Z: S-100Z 98.7 3.2E-07 7E-12 59.2 8.9 66 87-152 12-83 (93)
41 cd05025 S-100A1 S-100A1: S-100 98.7 3.2E-07 6.8E-12 59.1 8.7 65 47-113 8-80 (92)
42 cd05029 S-100A6 S-100A6: S-100 98.6 3.7E-07 8E-12 58.2 8.8 66 46-113 8-79 (88)
43 cd05031 S-100A10_like S-100A10 98.6 3.2E-07 7E-12 59.3 8.4 62 48-111 8-77 (94)
44 cd05025 S-100A1 S-100A1: S-100 98.6 4.1E-07 8.9E-12 58.5 8.7 68 86-153 10-83 (92)
45 KOG0041 Predicted Ca2+-binding 98.6 8.5E-07 1.8E-11 63.8 10.6 126 20-147 71-200 (244)
46 cd05031 S-100A10_like S-100A10 98.6 3.4E-07 7.3E-12 59.2 7.9 64 87-151 10-80 (94)
47 KOG0031 Myosin regulatory ligh 98.6 3.1E-06 6.6E-11 58.5 12.2 128 8-150 34-165 (171)
48 KOG0040 Ca2+-binding actin-bun 98.6 1.4E-06 3.1E-11 77.9 13.1 123 38-174 2243-2374(2399)
49 cd05029 S-100A6 S-100A6: S-100 98.6 6.5E-07 1.4E-11 57.1 8.3 66 88-154 13-83 (88)
50 cd00252 SPARC_EC SPARC_EC; ext 98.6 4.4E-07 9.4E-12 60.8 7.6 59 85-148 48-106 (116)
51 KOG2562 Protein phosphatase 2 98.5 1.3E-06 2.9E-11 69.9 10.9 120 41-165 271-398 (493)
52 cd00213 S-100 S-100: S-100 dom 98.5 8E-07 1.7E-11 56.6 7.4 65 87-151 10-80 (88)
53 KOG0377 Protein serine/threoni 98.5 1.4E-06 3.1E-11 69.5 10.1 120 49-171 465-596 (631)
54 KOG4223 Reticulocalbin, calume 98.5 1.4E-06 3E-11 67.0 9.2 122 47-177 76-211 (325)
55 KOG0038 Ca2+-binding kinase in 98.5 1.3E-06 2.9E-11 59.7 7.8 97 49-150 75-177 (189)
56 PF13833 EF-hand_8: EF-hand do 98.5 9.5E-07 2.1E-11 50.9 6.3 51 63-113 1-53 (54)
57 cd05023 S-100A11 S-100A11: S-1 98.4 2.3E-06 4.9E-11 54.7 8.3 67 87-153 11-83 (89)
58 cd00252 SPARC_EC SPARC_EC; ext 98.4 1.8E-06 4E-11 57.8 8.1 64 43-111 43-106 (116)
59 cd05024 S-100A10 S-100A10: A s 98.4 3.1E-06 6.7E-11 53.9 8.6 68 45-115 5-78 (91)
60 cd05030 calgranulins Calgranul 98.4 2.4E-06 5.2E-11 54.5 7.7 67 46-112 6-78 (88)
61 cd00051 EFh EF-hand, calcium b 98.4 1.9E-06 4.2E-11 50.1 6.8 60 50-111 2-62 (63)
62 PF14658 EF-hand_9: EF-hand do 98.4 1.7E-06 3.7E-11 51.5 6.2 62 89-150 2-64 (66)
63 PF13405 EF-hand_6: EF-hand do 98.4 6.9E-07 1.5E-11 45.5 3.7 27 123-149 1-27 (31)
64 cd05030 calgranulins Calgranul 98.3 4.4E-06 9.6E-11 53.3 7.3 66 88-153 11-82 (88)
65 PF13202 EF-hand_5: EF hand; P 98.3 1.7E-06 3.8E-11 41.7 3.5 25 124-148 1-25 (25)
66 PF00036 EF-hand_1: EF hand; 98.2 3.4E-06 7.3E-11 42.2 3.7 27 87-113 2-28 (29)
67 PF12763 EF-hand_4: Cytoskelet 98.2 7.5E-06 1.6E-10 53.8 6.1 69 42-114 4-72 (104)
68 PRK12309 transaldolase/EF-hand 98.1 1.6E-05 3.5E-10 63.9 7.3 56 83-152 332-387 (391)
69 KOG2643 Ca2+ binding protein, 98.0 2.6E-05 5.7E-10 62.3 8.1 104 47-153 317-456 (489)
70 KOG0030 Myosin essential light 98.0 0.00011 2.4E-09 50.1 9.6 132 7-148 12-149 (152)
71 KOG0751 Mitochondrial aspartat 98.0 0.00014 3E-09 59.2 11.1 104 43-151 31-137 (694)
72 PLN02964 phosphatidylserine de 98.0 7.2E-05 1.6E-09 63.6 9.9 97 7-114 144-244 (644)
73 cd05024 S-100A10 S-100A10: A s 97.9 0.00018 3.9E-09 45.9 8.0 65 88-153 11-79 (91)
74 KOG4251 Calcium binding protei 97.9 6.7E-05 1.5E-09 55.9 6.9 120 47-176 100-246 (362)
75 PF14658 EF-hand_9: EF-hand do 97.8 9.8E-05 2.1E-09 44.0 6.1 59 53-113 3-64 (66)
76 PF14788 EF-hand_10: EF hand; 97.8 0.00019 4.2E-09 40.4 6.1 49 102-151 2-50 (51)
77 KOG0751 Mitochondrial aspartat 97.6 0.00012 2.7E-09 59.5 6.0 93 52-151 112-208 (694)
78 KOG4347 GTPase-activating prot 97.6 0.00018 3.8E-09 60.2 6.3 112 31-144 487-612 (671)
79 KOG0046 Ca2+-binding actin-bun 97.5 0.00052 1.1E-08 56.3 7.6 75 39-116 10-88 (627)
80 KOG2643 Ca2+ binding protein, 97.5 0.0012 2.7E-08 53.0 9.4 96 49-151 234-347 (489)
81 KOG4666 Predicted phosphate ac 97.4 0.00037 8.1E-09 53.9 6.0 86 63-151 240-325 (412)
82 PF13202 EF-hand_5: EF hand; P 97.4 0.00024 5.3E-09 34.0 3.3 23 88-110 2-24 (25)
83 PF12763 EF-hand_4: Cytoskelet 97.4 0.0014 3E-08 43.0 7.6 63 85-151 10-72 (104)
84 KOG0377 Protein serine/threoni 97.4 0.00057 1.2E-08 55.1 6.7 66 86-151 548-616 (631)
85 PF14788 EF-hand_10: EF hand; 97.4 0.00094 2E-08 37.6 5.7 49 66-114 1-50 (51)
86 PRK12309 transaldolase/EF-hand 97.3 0.00071 1.5E-08 54.6 6.7 53 48-114 334-386 (391)
87 PF13405 EF-hand_6: EF-hand do 97.3 0.00051 1.1E-08 34.6 3.8 25 88-112 3-27 (31)
88 PF10591 SPARC_Ca_bdg: Secrete 97.3 0.0016 3.6E-08 43.4 6.8 64 80-146 49-112 (113)
89 KOG0041 Predicted Ca2+-binding 97.3 0.0019 4.1E-08 46.9 7.3 65 86-151 100-164 (244)
90 smart00054 EFh EF-hand, calciu 97.2 0.00043 9.3E-09 33.2 2.9 27 124-150 2-28 (29)
91 KOG0040 Ca2+-binding actin-bun 97.1 0.0031 6.8E-08 57.6 9.0 83 87-171 2255-2343(2399)
92 KOG4666 Predicted phosphate ac 97.0 0.0035 7.6E-08 48.7 6.9 99 48-150 259-359 (412)
93 KOG4251 Calcium binding protei 96.8 0.0017 3.8E-08 48.5 3.9 121 52-174 144-289 (362)
94 PF10591 SPARC_Ca_bdg: Secrete 96.8 0.00076 1.6E-08 45.0 1.9 63 44-109 50-112 (113)
95 KOG0169 Phosphoinositide-speci 96.7 0.05 1.1E-06 46.9 12.2 118 45-171 133-251 (746)
96 KOG3555 Ca2+-binding proteogly 96.4 0.025 5.5E-07 44.4 7.9 104 40-150 199-310 (434)
97 smart00054 EFh EF-hand, calciu 96.1 0.011 2.3E-07 28.0 3.3 25 88-112 3-27 (29)
98 KOG4065 Uncharacterized conser 96.1 0.032 7E-07 36.9 6.3 66 40-109 61-141 (144)
99 KOG2562 Protein phosphatase 2 95.8 0.05 1.1E-06 44.4 7.2 84 63-146 328-420 (493)
100 PF09279 EF-hand_like: Phospho 95.7 0.037 8E-07 34.5 5.3 62 87-149 2-68 (83)
101 KOG4578 Uncharacterized conser 95.4 0.011 2.5E-07 46.0 2.4 64 87-150 335-398 (421)
102 KOG0035 Ca2+-binding actin-bun 95.4 0.12 2.7E-06 45.6 8.7 103 41-146 740-848 (890)
103 PF09068 EF-hand_2: EF hand; 95.3 0.32 6.9E-06 33.1 9.0 101 31-150 24-125 (127)
104 PF08414 NADPH_Ox: Respiratory 94.5 0.13 2.7E-06 33.2 5.0 65 46-116 28-95 (100)
105 KOG1955 Ral-GTPase effector RA 94.5 0.13 2.8E-06 42.5 6.2 72 41-115 224-295 (737)
106 PF05042 Caleosin: Caleosin re 94.2 1 2.3E-05 32.2 9.5 62 87-149 98-165 (174)
107 PF09279 EF-hand_like: Phospho 93.1 0.47 1E-05 29.4 5.7 62 50-114 2-70 (83)
108 KOG1955 Ral-GTPase effector RA 92.9 0.12 2.7E-06 42.6 3.4 71 88-161 234-305 (737)
109 KOG1029 Endocytic adaptor prot 92.8 0.2 4.4E-06 43.6 4.8 63 47-112 194-256 (1118)
110 KOG1029 Endocytic adaptor prot 92.2 0.69 1.5E-05 40.5 7.1 67 42-112 10-76 (1118)
111 PF05517 p25-alpha: p25-alpha 91.6 1.4 3.1E-05 30.9 7.2 63 50-114 4-70 (154)
112 KOG0046 Ca2+-binding actin-bun 91.4 1 2.3E-05 37.6 7.1 64 87-151 21-86 (627)
113 PLN02952 phosphoinositide phos 91.3 2.1 4.6E-05 36.8 9.2 69 100-171 15-84 (599)
114 PF08726 EFhand_Ca_insen: Ca2+ 90.8 0.42 9.1E-06 28.8 3.4 29 119-148 3-31 (69)
115 KOG0039 Ferric reductase, NADH 90.7 0.66 1.4E-05 40.3 5.8 70 99-176 2-71 (646)
116 KOG4578 Uncharacterized conser 90.6 0.18 3.8E-06 39.6 2.0 61 50-113 335-398 (421)
117 KOG4065 Uncharacterized conser 90.6 1.6 3.5E-05 29.1 6.1 52 125-176 70-127 (144)
118 PF09069 EF-hand_3: EF-hand; 90.0 1.2 2.6E-05 28.3 5.1 53 121-174 2-57 (90)
119 KOG1707 Predicted Ras related/ 89.4 1.2 2.7E-05 37.8 6.0 141 3-151 192-344 (625)
120 KOG2557 Uncharacterized conser 88.9 1.6 3.5E-05 35.0 6.1 110 42-154 14-126 (427)
121 PF11829 DUF3349: Protein of u 88.9 3.4 7.3E-05 26.6 6.5 68 102-173 20-87 (96)
122 KOG3555 Ca2+-binding proteogly 88.7 0.7 1.5E-05 36.6 4.0 62 48-114 250-311 (434)
123 KOG3866 DNA-binding protein of 88.7 1.7 3.7E-05 34.1 6.0 89 53-150 249-354 (442)
124 PLN02952 phosphoinositide phos 88.3 7.6 0.00016 33.5 10.1 86 63-149 13-109 (599)
125 PF14513 DAG_kinase_N: Diacylg 86.7 1.4 3.1E-05 30.4 4.1 33 99-131 46-78 (138)
126 KOG0042 Glycerol-3-phosphate d 86.2 3.4 7.4E-05 35.1 6.8 74 41-116 586-660 (680)
127 KOG4286 Dystrophin-like protei 85.3 4.4 9.6E-05 35.6 7.1 63 87-151 472-534 (966)
128 KOG0169 Phosphoinositide-speci 84.5 7 0.00015 34.3 8.0 68 83-151 134-201 (746)
129 PF05517 p25-alpha: p25-alpha 83.9 12 0.00027 26.2 10.2 83 88-172 2-89 (154)
130 PF05042 Caleosin: Caleosin re 80.6 11 0.00023 27.1 6.6 100 49-150 8-124 (174)
131 PF00404 Dockerin_1: Dockerin 79.2 3.4 7.4E-05 18.7 2.5 17 132-148 1-17 (21)
132 KOG4347 GTPase-activating prot 78.7 4.3 9.3E-05 35.0 4.7 50 102-151 535-584 (671)
133 PF12174 RST: RCD1-SRO-TAF4 (R 77.6 4.5 9.8E-05 24.4 3.5 48 100-151 7-54 (70)
134 PF14513 DAG_kinase_N: Diacylg 77.0 3.5 7.5E-05 28.5 3.2 71 21-98 6-82 (138)
135 KOG1707 Predicted Ras related/ 74.7 8.4 0.00018 33.0 5.4 90 40-134 307-398 (625)
136 KOG1265 Phospholipase C [Lipid 74.3 65 0.0014 29.5 10.6 65 102-170 205-275 (1189)
137 KOG2243 Ca2+ release channel ( 73.7 6.3 0.00014 37.4 4.7 58 53-112 4062-4119(5019)
138 KOG4004 Matricellular protein 72.9 1.6 3.5E-05 31.9 0.8 56 91-149 193-249 (259)
139 PF01023 S_100: S-100/ICaBP ty 72.0 14 0.0003 20.0 4.4 33 46-78 4-36 (44)
140 KOG0035 Ca2+-binding actin-bun 70.9 19 0.00042 32.5 6.9 65 87-151 749-817 (890)
141 KOG2871 Uncharacterized conser 70.1 6.8 0.00015 31.6 3.7 41 119-163 306-346 (449)
142 PF09682 Holin_LLH: Phage holi 69.5 26 0.00055 23.0 5.9 51 125-175 54-104 (108)
143 PF04558 tRNA_synt_1c_R1: Glut 69.4 22 0.00048 25.3 5.9 51 119-174 82-132 (164)
144 KOG3866 DNA-binding protein of 68.9 22 0.00048 28.1 6.1 52 125-176 247-306 (442)
145 KOG4301 Beta-dystrobrevin [Cyt 64.2 41 0.00089 27.0 6.8 64 88-153 113-176 (434)
146 PF13720 Acetyltransf_11: Udp 63.8 33 0.00071 21.3 5.3 55 40-100 26-80 (83)
147 PF03979 Sigma70_r1_1: Sigma-7 63.0 15 0.00032 22.7 3.6 31 135-171 18-48 (82)
148 PF07879 PHB_acc_N: PHB/PHA ac 62.2 7.6 0.00017 22.9 2.0 22 129-150 10-31 (64)
149 PF09873 DUF2100: Uncharacteri 61.1 27 0.00058 25.8 5.0 39 135-173 38-84 (215)
150 PF06648 DUF1160: Protein of u 59.9 31 0.00066 23.3 4.8 77 88-176 40-116 (122)
151 KOG4004 Matricellular protein 58.0 4.5 9.7E-05 29.7 0.7 51 63-114 201-251 (259)
152 cd07313 terB_like_2 tellurium 57.8 46 0.001 21.1 6.0 82 63-146 12-96 (104)
153 PF14069 SpoVIF: Stage VI spor 57.8 42 0.00091 20.8 4.8 34 140-173 29-62 (79)
154 KOG4403 Cell surface glycoprot 57.5 40 0.00087 27.9 5.9 99 63-168 41-144 (575)
155 KOG3449 60S acidic ribosomal p 56.4 49 0.0011 21.8 5.2 43 125-171 4-46 (112)
156 PF14164 YqzH: YqzH-like prote 56.3 40 0.00087 19.9 5.5 34 123-156 9-43 (64)
157 PLN02228 Phosphoinositide phos 56.2 84 0.0018 27.2 7.9 27 87-115 26-52 (567)
158 KOG0042 Glycerol-3-phosphate d 54.9 36 0.00079 29.3 5.4 64 87-151 595-658 (680)
159 PLN02859 glutamine-tRNA ligase 54.7 1.4E+02 0.003 27.0 9.1 51 119-174 84-134 (788)
160 KOG0998 Synaptic vesicle prote 53.8 8.9 0.00019 34.6 1.9 72 41-115 276-347 (847)
161 COG5611 Predicted nucleic-acid 53.7 65 0.0014 21.6 5.8 48 123-172 22-69 (130)
162 PF05920 Homeobox_KN: Homeobox 53.0 12 0.00025 19.8 1.6 30 23-52 6-35 (40)
163 PF03672 UPF0154: Uncharacteri 51.8 49 0.0011 19.6 4.7 42 125-171 19-60 (64)
164 PRK00523 hypothetical protein; 50.3 56 0.0012 19.8 4.7 42 125-171 27-68 (72)
165 PLN02222 phosphoinositide phos 48.1 1.1E+02 0.0023 26.7 7.3 66 40-112 20-89 (581)
166 PF11848 DUF3368: Domain of un 48.0 46 0.001 18.2 3.7 33 135-170 14-46 (48)
167 KOG1954 Endocytosis/signaling 47.5 40 0.00087 27.7 4.4 55 87-145 446-500 (532)
168 cd07313 terB_like_2 tellurium 47.2 50 0.0011 20.9 4.3 27 122-148 37-63 (104)
169 PLN02230 phosphoinositide phos 46.4 1.3E+02 0.0028 26.3 7.6 29 86-115 30-58 (598)
170 PLN02222 phosphoinositide phos 45.5 95 0.0021 27.0 6.6 12 138-149 171-182 (581)
171 PTZ00373 60S Acidic ribosomal 45.4 84 0.0018 20.9 5.1 42 126-171 7-48 (112)
172 PLN02228 Phosphoinositide phos 43.7 1.3E+02 0.0029 26.0 7.3 63 43-112 22-91 (567)
173 PF01465 GRIP: GRIP domain; I 43.5 25 0.00054 19.2 2.0 38 8-50 8-45 (46)
174 KOG1264 Phospholipase C [Lipid 43.2 2.1E+02 0.0045 26.3 8.3 109 40-151 135-250 (1267)
175 PF09943 DUF2175: Uncharacteri 43.2 32 0.00069 22.4 2.8 49 97-146 21-69 (101)
176 PF09336 Vps4_C: Vps4 C termin 42.8 25 0.00054 20.6 2.1 27 138-168 29-55 (62)
177 KOG2419 Phosphatidylserine dec 42.1 36 0.00077 29.8 3.6 69 81-149 433-532 (975)
178 PRK01844 hypothetical protein; 40.2 86 0.0019 19.0 4.6 42 125-171 26-67 (72)
179 PRK12461 UDP-N-acetylglucosami 40.1 1.4E+02 0.0031 22.8 6.4 57 38-100 196-252 (255)
180 TIGR01848 PHA_reg_PhaR polyhyd 39.9 26 0.00057 23.0 2.0 22 129-150 10-31 (107)
181 PF12486 DUF3702: ImpA domain 39.8 1E+02 0.0022 21.6 5.1 31 45-77 66-96 (148)
182 KOG4070 Putative signal transd 39.5 1E+02 0.0022 21.7 4.9 82 48-131 15-107 (180)
183 TIGR01673 holin_LLH phage holi 39.3 1.1E+02 0.0024 20.1 5.9 52 124-175 52-104 (108)
184 PF11116 DUF2624: Protein of u 38.3 1E+02 0.0022 19.4 7.1 50 101-151 14-63 (85)
185 PF11363 DUF3164: Protein of u 38.0 1.6E+02 0.0034 21.6 6.1 30 119-148 116-145 (195)
186 COG2511 GatE Archaeal Glu-tRNA 38.0 1.5E+02 0.0033 25.5 6.5 49 122-173 523-583 (631)
187 PF09373 PMBR: Pseudomurein-bi 37.9 45 0.00097 16.7 2.3 17 135-151 1-17 (33)
188 KOG2243 Ca2+ release channel ( 37.3 72 0.0016 31.1 4.9 56 91-148 4063-4118(5019)
189 PF14493 HTH_40: Helix-turn-he 36.8 1.1E+02 0.0023 19.1 5.5 26 32-57 15-40 (91)
190 KOG3442 Uncharacterized conser 36.3 96 0.0021 21.0 4.3 37 135-176 52-88 (132)
191 cd05833 Ribosomal_P2 Ribosomal 36.3 1.3E+02 0.0028 19.9 5.1 39 127-169 6-44 (109)
192 smart00755 Grip golgin-97, Ran 36.2 42 0.0009 18.4 2.2 39 8-52 7-45 (46)
193 PF12674 Zn_ribbon_2: Putative 35.2 1.1E+02 0.0023 19.0 4.2 35 139-174 42-76 (81)
194 PF05099 TerB: Tellurite resis 35.0 48 0.001 22.2 2.9 79 63-144 36-118 (140)
195 PF10668 Phage_terminase: Phag 34.9 84 0.0018 18.3 3.4 24 124-148 9-32 (60)
196 PF09851 SHOCT: Short C-termin 34.9 62 0.0013 15.9 3.3 25 124-151 5-29 (31)
197 PF08976 DUF1880: Domain of un 34.6 37 0.0008 22.7 2.1 29 84-112 6-34 (118)
198 PRK00819 RNA 2'-phosphotransfe 34.4 94 0.002 22.5 4.4 33 133-169 28-60 (179)
199 KOG4629 Predicted mechanosensi 34.1 1.2E+02 0.0027 27.0 5.7 60 86-153 405-464 (714)
200 PLN02230 phosphoinositide phos 32.9 1.5E+02 0.0033 25.8 6.0 52 119-172 26-77 (598)
201 PHA00369 H minor spike protein 32.8 67 0.0015 24.3 3.4 38 141-178 224-261 (325)
202 PF11569 Homez: Homeodomain le 32.8 75 0.0016 18.3 2.9 24 29-52 24-47 (56)
203 KOG0998 Synaptic vesicle prote 32.4 58 0.0013 29.6 3.6 69 40-112 121-189 (847)
204 cd00086 homeodomain Homeodomai 31.8 52 0.0011 18.1 2.3 28 26-53 23-50 (59)
205 PF08672 APC2: Anaphase promot 31.8 1.1E+02 0.0024 17.8 5.0 32 120-152 13-46 (60)
206 PF04157 EAP30: EAP30/Vps36 fa 31.7 2.2E+02 0.0047 21.2 6.7 44 123-175 175-218 (223)
207 KOG1954 Endocytosis/signaling 31.4 79 0.0017 26.1 3.8 59 50-112 446-504 (532)
208 PF11264 ThylakoidFormat: Thyl 30.6 2.3E+02 0.0051 21.2 6.1 90 6-107 49-138 (216)
209 PF02761 Cbl_N2: CBL proto-onc 30.5 1.4E+02 0.0031 18.7 7.7 61 87-149 9-69 (85)
210 PF04687 Microvir_H: Microviru 30.2 75 0.0016 24.0 3.3 26 153-178 220-245 (310)
211 PF08766 DEK_C: DEK C terminal 30.1 1.1E+02 0.0023 17.1 3.6 23 136-161 18-40 (54)
212 PF07308 DUF1456: Protein of u 30.0 1.3E+02 0.0028 18.0 4.1 49 120-172 15-63 (68)
213 COG3763 Uncharacterized protei 30.0 1.3E+02 0.0029 18.1 5.3 44 125-173 26-69 (71)
214 PLN02223 phosphoinositide phos 29.9 2.4E+02 0.0052 24.3 6.6 51 121-172 15-66 (537)
215 PF12207 DUF3600: Domain of un 28.9 30 0.00064 24.2 1.0 57 96-154 63-121 (162)
216 PRK00199 ihfB integration host 28.4 1.6E+02 0.0034 18.5 4.4 17 158-174 16-32 (94)
217 KOG4149 Uncharacterized conser 28.3 99 0.0021 20.9 3.3 53 97-152 50-105 (129)
218 PF06952 PsiA: PsiA protein; 28.2 82 0.0018 23.9 3.2 20 85-106 39-58 (238)
219 PF01885 PTS_2-RNA: RNA 2'-pho 27.7 1.1E+02 0.0025 22.1 3.9 34 133-170 27-60 (186)
220 PRK14981 DNA-directed RNA poly 27.6 1.4E+02 0.003 19.7 4.0 27 120-150 80-106 (112)
221 PF06226 DUF1007: Protein of u 27.5 68 0.0015 23.7 2.8 28 126-153 54-81 (212)
222 PF02885 Glycos_trans_3N: Glyc 26.8 1.4E+02 0.003 17.4 5.8 51 119-175 15-65 (66)
223 cd08324 CARD_NOD1_CARD4 Caspas 26.7 1.7E+02 0.0037 18.4 5.1 48 99-152 27-74 (85)
224 PHA02105 hypothetical protein 26.1 1.3E+02 0.0029 17.3 3.2 49 66-114 4-58 (68)
225 smart00874 B5 tRNA synthetase 25.8 1.3E+02 0.0027 17.6 3.3 13 139-151 19-31 (71)
226 COG4860 Uncharacterized protei 25.3 1.7E+02 0.0037 20.4 4.1 31 138-174 93-123 (170)
227 KOG1265 Phospholipase C [Lipid 25.1 5.5E+02 0.012 24.0 8.0 65 84-148 220-297 (1189)
228 PF04282 DUF438: Family of unk 25.0 1.7E+02 0.0036 17.7 7.1 53 109-169 4-56 (71)
229 PF00046 Homeobox: Homeobox do 23.4 1.4E+02 0.0031 16.3 4.4 45 40-92 5-49 (57)
230 TIGR01201 HU_rel DNA-binding p 23.4 1.9E+02 0.004 20.0 4.2 34 136-174 28-61 (145)
231 PF08708 PriCT_1: Primase C te 23.3 1.7E+02 0.0036 17.1 4.8 16 157-172 51-66 (71)
232 TIGR00135 gatC glutamyl-tRNA(G 23.3 2E+02 0.0043 18.0 4.2 29 139-171 1-29 (93)
233 KOG0039 Ferric reductase, NADH 22.6 2.9E+02 0.0063 24.4 6.1 79 67-150 4-89 (646)
234 COG4359 Uncharacterized conser 22.3 3.3E+02 0.0071 20.2 5.8 41 64-109 11-51 (220)
235 TIGR03573 WbuX N-acetyl sugar 22.3 2.3E+02 0.005 22.6 5.1 38 121-168 305-342 (343)
236 COG0143 MetG Methionyl-tRNA sy 22.3 1.8E+02 0.0039 25.2 4.6 45 94-139 364-408 (558)
237 cd07925 LigA_like_1 The A subu 22.1 67 0.0015 21.1 1.6 40 7-51 15-54 (106)
238 cd07921 PCA_45_Doxase_A_like S 21.7 49 0.0011 21.8 0.9 39 8-51 16-54 (106)
239 PLN00138 large subunit ribosom 21.7 2.5E+02 0.0055 18.6 5.1 36 130-169 9-44 (113)
240 KOG0843 Transcription factor E 21.7 2.3E+02 0.0051 20.6 4.4 46 40-93 107-152 (197)
241 cd04411 Ribosomal_P1_P2_L12p R 21.5 2.5E+02 0.0053 18.4 5.7 28 139-170 17-44 (105)
242 PF08100 Dimerisation: Dimeris 21.5 1.6E+02 0.0034 16.5 2.9 31 63-93 19-49 (51)
243 PF11300 DUF3102: Protein of u 21.4 2.8E+02 0.006 19.0 7.4 75 66-149 38-128 (130)
244 KOG0493 Transcription factor E 21.2 2.5E+02 0.0054 21.8 4.7 27 37-70 248-274 (342)
245 COG5296 Transcription factor i 21.1 4.7E+02 0.01 21.8 6.4 51 121-171 303-353 (521)
246 PF09068 EF-hand_2: EF hand; 21.1 2.7E+02 0.006 18.8 7.0 28 87-114 99-126 (127)
247 TIGR00988 hip integration host 20.8 2.3E+02 0.0049 17.7 4.4 17 158-174 16-32 (94)
248 PRK13696 hypothetical protein; 20.8 2E+02 0.0043 17.0 3.6 11 159-169 50-60 (62)
249 PRK13704 plasmid SOS inhibitio 20.5 1.5E+02 0.0032 22.5 3.3 23 85-109 39-61 (240)
250 PRK00034 gatC aspartyl/glutamy 20.1 2.4E+02 0.0051 17.6 4.3 29 139-171 3-31 (95)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.89 E-value=9.5e-22 Score=137.13 Aligned_cols=131 Identities=24% Similarity=0.421 Sum_probs=118.5
Q ss_pred HHhhcCCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCC-CCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhh
Q 030405 36 LARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTN-KKESLFADRVFDLFDTKHNGILDFEEFARALSIF 114 (178)
Q Consensus 36 ~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~-~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~ 114 (178)
+...+.|+.+++++|+++|..+|++ ++|.|++.+|..++...+ ...+..+.++|..++. +.+.|+|.+|+.++...
T Consensus 8 ~~~~~~~t~~qi~~lkeaF~l~D~d--~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~ 84 (160)
T COG5126 8 LLTFTQLTEEQIQELKEAFQLFDRD--SDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVK 84 (160)
T ss_pred hhhcccCCHHHHHHHHHHHHHhCcC--CCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHH
Confidence 5666789999999999999999999 999999999999997744 4557788999999999 88999999999999998
Q ss_pred CCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 030405 115 HPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKVLS 173 (178)
Q Consensus 115 ~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 173 (178)
......+++++++|+.||.|++|+|+..|++++++.+ |..++++++++++..+-.
T Consensus 85 ~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~l----ge~~~deev~~ll~~~d~ 139 (160)
T COG5126 85 LKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSL----GERLSDEEVEKLLKEYDE 139 (160)
T ss_pred hccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhh----cccCCHHHHHHHHHhcCC
Confidence 8768889999999999999999999999999999877 999999999988876543
No 2
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.88 E-value=1e-21 Score=141.41 Aligned_cols=148 Identities=31% Similarity=0.510 Sum_probs=129.8
Q ss_pred CccccCCCCCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCC--CCCHHHHHHHHHHHhcC
Q 030405 20 DADLYKQPRGLEDPEALARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTN--KKESLFADRVFDLFDTK 97 (178)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~--~~~~~~~~~lf~~~d~~ 97 (178)
.++++| +.+.++.+.++|+..++..|++.|..-+ ++|.++..+|..++.... .....+++.+|+.+|.+
T Consensus 6 ~~~~~~-----~~~e~l~~~t~f~~~ei~~~Yr~Fk~~c----P~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~ 76 (193)
T KOG0044|consen 6 NSKLQP-----ESLEQLVQQTKFSKKEIQQWYRGFKNEC----PSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKN 76 (193)
T ss_pred cccCCc-----HHHHHHHHhcCCCHHHHHHHHHHhcccC----CCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhccc
Confidence 445555 8899999999999999999999999877 579999999999987733 34466789999999999
Q ss_pred CCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCC---CCCHHHHHHHHHHHHhh
Q 030405 98 HNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGM---NLSDDVIESIIDKVLSL 174 (178)
Q Consensus 98 ~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~---~l~~~~~~~~~~~~~~~ 174 (178)
++|.|+|.||+..++...+ +..+++++++|++||.||+|+|+++|+..++.+++...+. +..+.-.++.++.+|++
T Consensus 77 ~dg~i~F~Efi~als~~~r-Gt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k 155 (193)
T KOG0044|consen 77 KDGTIDFLEFICALSLTSR-GTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSK 155 (193)
T ss_pred CCCCcCHHHHHHHHHHHcC-CcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHH
Confidence 9999999999999999998 8999999999999999999999999999999999887663 23455677899999999
Q ss_pred ccC
Q 030405 175 IQL 177 (178)
Q Consensus 175 ~D~ 177 (178)
+|.
T Consensus 156 ~D~ 158 (193)
T KOG0044|consen 156 MDK 158 (193)
T ss_pred cCC
Confidence 884
No 3
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.86 E-value=2.7e-20 Score=133.92 Aligned_cols=153 Identities=41% Similarity=0.612 Sum_probs=128.8
Q ss_pred hcccCccccCCCCCCCcHHHHHhhcC----CCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCCCHHHHHHHH
Q 030405 16 VNCCDADLYKQPRGLEDPEALARETV----FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVF 91 (178)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf 91 (178)
||+..+.+.. .+.+..+...++ |+..||.+|+.+|.+++.+. +.|++++++|..+. ....+++..+++
T Consensus 1 Mg~~~s~~~~----~~~~~~~~~~~~~~~~fs~~EI~~L~~rF~kl~~~~-~~g~lt~eef~~i~---~~~~Np~~~rI~ 72 (187)
T KOG0034|consen 1 MGNLSSTLLS----DEDLEELQMYTGDPTQFSANEIERLYERFKKLDRNN-GDGYLTKEEFLSIP---ELALNPLADRII 72 (187)
T ss_pred CCcccccccc----hhhhHHHHhccCCCcccCHHHHHHHHHHHHHhcccc-ccCccCHHHHHHHH---HHhcCcHHHHHH
Confidence 5666665422 255677777777 99999999999999999764 67899999999887 455577789999
Q ss_pred HHHhcCCCCc-ccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 030405 92 DLFDTKHNGI-LDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDK 170 (178)
Q Consensus 92 ~~~d~~~~g~-i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~ 170 (178)
+.++.+++|. |+|++|+.++..+......+++++.+|++||.+++|+|+++|+.+++..+....... +++.++.+++.
T Consensus 73 ~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~-~~e~~~~i~d~ 151 (187)
T KOG0034|consen 73 DRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDM-SDEQLEDIVDK 151 (187)
T ss_pred HHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcc-hHHHHHHHHHH
Confidence 9999998888 999999999999998666667999999999999999999999999999986443222 59999999999
Q ss_pred HHhhccC
Q 030405 171 VLSLIQL 177 (178)
Q Consensus 171 ~~~~~D~ 177 (178)
+|.++|.
T Consensus 152 t~~e~D~ 158 (187)
T KOG0034|consen 152 TFEEADT 158 (187)
T ss_pred HHHHhCC
Confidence 9999984
No 4
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.79 E-value=7.5e-18 Score=118.62 Aligned_cols=126 Identities=24% Similarity=0.384 Sum_probs=109.0
Q ss_pred CCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCC-CHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCCh
Q 030405 42 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK-ESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPI 120 (178)
Q Consensus 42 ~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 120 (178)
++..++..+..+|..+|.+ ++|+|+..++..++...+.. ....+..+++.+|.+++|.|++++|..++.........
T Consensus 2 ~~~~~~~el~~~F~~fD~d--~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~ 79 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKD--GDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTD 79 (151)
T ss_pred CCHHHHHHHHHHHHHHCCC--CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccc
Confidence 5678889999999999999 99999999999999885544 45668999999999999999999999999876653333
Q ss_pred ----hHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 030405 121 ----DDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKVLS 173 (178)
Q Consensus 121 ----~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 173 (178)
.+.++.+|+.||.|++|+|+.+||+.+|..+ |..++.++++.+++.+-.
T Consensus 80 ~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~l----g~~~~~~e~~~mi~~~d~ 132 (151)
T KOG0027|consen 80 EEASSEELKEAFRVFDKDGDGFISASELKKVLTSL----GEKLTDEECKEMIREVDV 132 (151)
T ss_pred ccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHh----CCcCCHHHHHHHHHhcCC
Confidence 3489999999999999999999999999887 889998888877766543
No 5
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.76 E-value=8.4e-18 Score=113.69 Aligned_cols=154 Identities=24% Similarity=0.406 Sum_probs=126.0
Q ss_pred hcccCccccCCCCCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccCCCCC------cccHHHHHHHHhcCCCCCHHHHHH
Q 030405 16 VNCCDADLYKQPRGLEDPEALARETVFSVSEIEALYELFKKISSAVIDDG------LINKEEFQLALFKTNKKESLFADR 89 (178)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g------~i~~~ef~~~l~~~~~~~~~~~~~ 89 (178)
||+....-+. +++...+..+.|+.++|-+++.+|+.+.++.++.. .+...-+..+...+.++.+++-++
T Consensus 1 MGNK~~vFT~-----eqLd~YQDCTFFtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kMPELkenpfk~r 75 (189)
T KOG0038|consen 1 MGNKQTVFTE-----EQLDEYQDCTFFTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKMPELKENPFKRR 75 (189)
T ss_pred CCCccceeeH-----HHHhhhcccccccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhChhhhcChHHHH
Confidence 5665555555 88999999999999999999999999987622211 122223333334466777888899
Q ss_pred HHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 030405 90 VFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIID 169 (178)
Q Consensus 90 lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~ 169 (178)
+...|+.++.|.++|++|+.+++.++.....+-++..+|++||.|+++.|+.+++...+.+++ ..++|++|++.+++
T Consensus 76 i~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lT---r~eLs~eEv~~i~e 152 (189)
T KOG0038|consen 76 ICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLT---RDELSDEEVELICE 152 (189)
T ss_pred HHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHh---hccCCHHHHHHHHH
Confidence 999999999999999999999998887555566788999999999999999999999999884 45799999999999
Q ss_pred HHHhhccC
Q 030405 170 KVLSLIQL 177 (178)
Q Consensus 170 ~~~~~~D~ 177 (178)
++++++|+
T Consensus 153 kvieEAD~ 160 (189)
T KOG0038|consen 153 KVIEEADL 160 (189)
T ss_pred HHHHHhcC
Confidence 99999986
No 6
>PTZ00183 centrin; Provisional
Probab=99.73 E-value=4.2e-16 Score=110.04 Aligned_cols=125 Identities=19% Similarity=0.323 Sum_probs=107.4
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCC-CCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCC
Q 030405 41 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNK-KESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSP 119 (178)
Q Consensus 41 ~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~-~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 119 (178)
++++.+++.+...|..+|++ ++|.|+..+|..++...+. .....+..+|..+|.+++|.|+|++|+..+........
T Consensus 10 ~~~~~~~~~~~~~F~~~D~~--~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~ 87 (158)
T PTZ00183 10 GLTEDQKKEIREAFDLFDTD--GSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERD 87 (158)
T ss_pred CCCHHHHHHHHHHHHHhCCC--CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCC
Confidence 48889999999999999999 9999999999999876443 34566899999999999999999999998876543355
Q ss_pred hhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 030405 120 IDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKV 171 (178)
Q Consensus 120 ~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 171 (178)
..+.++.+|+.+|.+++|.|+.+||..++..+ |..++..++..++..+
T Consensus 88 ~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~----~~~l~~~~~~~~~~~~ 135 (158)
T PTZ00183 88 PREEILKAFRLFDDDKTGKISLKNLKRVAKEL----GETITDEELQEMIDEA 135 (158)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh----CCCCCHHHHHHHHHHh
Confidence 66789999999999999999999999999876 7789998888776554
No 7
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=2.4e-16 Score=108.23 Aligned_cols=130 Identities=19% Similarity=0.315 Sum_probs=112.8
Q ss_pred cCCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCC-CHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCC
Q 030405 40 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK-ESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNS 118 (178)
Q Consensus 40 ~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~ 118 (178)
..++..+-+.++..|..++++ +.|+|+..+|..++...+.. .+..+..+...+|.+++|.|+|++|+..+.......
T Consensus 25 ~~l~~~q~q~i~e~f~lfd~~--~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~ 102 (172)
T KOG0028|consen 25 SELTEEQKQEIKEAFELFDPD--MAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGER 102 (172)
T ss_pred ccccHHHHhhHHHHHHhhccC--CCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhcc
Confidence 346778888999999999998 99999999998887775543 456678899999999999999999999977655557
Q ss_pred ChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhc
Q 030405 119 PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKVLSLI 175 (178)
Q Consensus 119 ~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 175 (178)
++.+++..+|+++|.|++|.|+..+|+.+...+ |+++++++++++++++-...
T Consensus 103 dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeL----genltD~El~eMIeEAd~d~ 155 (172)
T KOG0028|consen 103 DTKEEIKKAFRLFDDDKTGKISQRNLKRVAKEL----GENLTDEELMEMIEEADRDG 155 (172)
T ss_pred CcHHHHHHHHHcccccCCCCcCHHHHHHHHHHh----CccccHHHHHHHHHHhcccc
Confidence 799999999999999999999999999998887 99999999999988765443
No 8
>PTZ00184 calmodulin; Provisional
Probab=99.72 E-value=6.1e-16 Score=107.96 Aligned_cols=125 Identities=20% Similarity=0.396 Sum_probs=106.6
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCC-CCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCC
Q 030405 41 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTN-KKESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSP 119 (178)
Q Consensus 41 ~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~-~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 119 (178)
.++.++++.+...|..+|.+ ++|.|+..+|..++...+ ......+..+|+.+|.+++|.|+|++|+..+........
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~--~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~ 81 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKD--GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTD 81 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCC--CCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCc
Confidence 37888999999999999999 999999999999886633 234567899999999999999999999999887654345
Q ss_pred hhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 030405 120 IDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKV 171 (178)
Q Consensus 120 ~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 171 (178)
..+.+..+|+.+|.+++|.|+.+|+..++..+ |..++.+++..++..+
T Consensus 82 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~ 129 (149)
T PTZ00184 82 SEEEIKEAFKVFDRDGNGFISAAELRHVMTNL----GEKLTDEEVDEMIREA 129 (149)
T ss_pred HHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH----CCCCCHHHHHHHHHhc
Confidence 66788999999999999999999999999876 7788888887766554
No 9
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.62 E-value=4.1e-14 Score=96.71 Aligned_cols=120 Identities=18% Similarity=0.326 Sum_probs=104.7
Q ss_pred CCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCC-CCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCCh
Q 030405 42 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTN-KKESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPI 120 (178)
Q Consensus 42 ~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~-~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 120 (178)
|++.||+.++++|..+|.+ ++|.|++++++..+.+.+ ...+..+..+++. ..|.|+|.-|+.++.......++
T Consensus 26 f~q~QIqEfKEAF~~mDqn--rDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmfGekL~gtdp 99 (171)
T KOG0031|consen 26 FDQSQIQEFKEAFNLMDQN--RDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMFGEKLNGTDP 99 (171)
T ss_pred hhHHHHHHHHHHHHHHhcc--CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHHhcCCCH
Confidence 7899999999999999999 999999999999998854 3455666777765 46789999999999876665788
Q ss_pred hHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 030405 121 DDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKV 171 (178)
Q Consensus 121 ~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 171 (178)
++.+..+|+.||.+++|.|..+.++.+|... |..++++|++.+.+..
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~----gDr~~~eEV~~m~r~~ 146 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTM----GDRFTDEEVDEMYREA 146 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHh----cccCCHHHHHHHHHhC
Confidence 8889999999999999999999999999886 8899999999887654
No 10
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.55 E-value=1.6e-13 Score=95.94 Aligned_cols=135 Identities=21% Similarity=0.326 Sum_probs=108.8
Q ss_pred cccchhhhhhhcccCccccCCCCCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhc--CCCCC
Q 030405 6 DGLKHFCVVVVNCCDADLYKQPRGLEDPEALARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFK--TNKKE 83 (178)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~--~~~~~ 83 (178)
.-|+.+|..+.....+.++. ..+..+.+..++++.+ ..+.+.|..+|. +++.|+..+|..++.. .....
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~-----~el~~ilr~lg~~~s~-~ei~~l~~~~d~---~~~~idf~~Fl~~ms~~~~~~~~ 90 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDR-----NELGKILRSLGFNPSE-AEINKLFEEIDA---GNETVDFPEFLTVMSVKLKRGDK 90 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcH-----HHHHHHHHHcCCCCcH-HHHHHHHHhccC---CCCccCHHHHHHHHHHHhccCCc
Confidence 34677788888888888888 8899988776665332 234444554443 4689999999999866 34455
Q ss_pred HHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 030405 84 SLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVA 150 (178)
Q Consensus 84 ~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~ 150 (178)
...+..+|+.||.+++|.|+..+++.++..+.. ..+++++..+++.+|.|++|.|++++|.+.+..
T Consensus 91 ~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge-~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 91 EEELREAFKLFDKDHDGYISIGELRRVLKSLGE-RLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHHHHHHHHHhCCCCCceecHHHHHHHHHhhcc-cCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 677899999999999999999999999998887 688899999999999999999999999998743
No 11
>PLN02964 phosphatidylserine decarboxylase
Probab=99.51 E-value=4.1e-13 Score=112.42 Aligned_cols=114 Identities=19% Similarity=0.282 Sum_probs=96.2
Q ss_pred CCcHHHHHhh--cCCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCC--CCCHH---HHHHHHHHHhcCCCCcc
Q 030405 30 LEDPEALARE--TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTN--KKESL---FADRVFDLFDTKHNGIL 102 (178)
Q Consensus 30 ~~~~~~~~~~--~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~--~~~~~---~~~~lf~~~d~~~~g~i 102 (178)
.+.+..+... +.|+.+|++.+++.|+.+|++ ++|.+ +..++...+ .+.+. +++.+|+.+|.+++|.|
T Consensus 123 ~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~d--gdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~I 196 (644)
T PLN02964 123 KNTLVGYCELDLFDFVTQEPESACESFDLLDPS--SSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQL 196 (644)
T ss_pred HHHhhhheeecHhhccHHHHHHHHHHHHHHCCC--CCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeE
Confidence 3677777777 889999999999999999999 99987 555554433 22222 37899999999999999
Q ss_pred cHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 030405 103 DFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVA 150 (178)
Q Consensus 103 ~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~ 150 (178)
+++||+.++..+.. ...+++++.+|+.||.|++|+|+.+||..++..
T Consensus 197 dfdEFl~lL~~lg~-~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 197 SFSEFSDLIKAFGN-LVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred cHHHHHHHHHHhcc-CCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 99999999988764 567888999999999999999999999999987
No 12
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.49 E-value=6.7e-13 Score=95.91 Aligned_cols=113 Identities=22% Similarity=0.336 Sum_probs=98.5
Q ss_pred HHHHHHHHHhhcccCCCCCcccHHHHHHHHhc--CCCCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHH
Q 030405 47 IEALYELFKKISSAVIDDGLINKEEFQLALFK--TNKKESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKI 124 (178)
Q Consensus 47 i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~--~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~ 124 (178)
-..+...|...|++ ++|.|+..|+..+|.. -..-+...++.+...||.+.+|+|+++||..+|..+. .+
T Consensus 56 ~~~~~~~f~~vD~d--~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~-------~W 126 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRD--RSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN-------QW 126 (221)
T ss_pred cHHHHHHHHhhCcc--ccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH-------HH
Confidence 45788999999999 9999999999999874 2233456689999999999999999999999998774 49
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 030405 125 EFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKVL 172 (178)
Q Consensus 125 ~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 172 (178)
+.+|+.||.|++|.|+..||++.|..+ |..++++-++.++++.-
T Consensus 127 r~vF~~~D~D~SG~I~~sEL~~Al~~~----Gy~Lspq~~~~lv~kyd 170 (221)
T KOG0037|consen 127 RNVFRTYDRDRSGTIDSSELRQALTQL----GYRLSPQFYNLLVRKYD 170 (221)
T ss_pred HHHHHhcccCCCCcccHHHHHHHHHHc----CcCCCHHHHHHHHHHhc
Confidence 999999999999999999999999887 99999988777776653
No 13
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.48 E-value=9.5e-13 Score=92.63 Aligned_cols=134 Identities=22% Similarity=0.261 Sum_probs=110.0
Q ss_pred ccchhhhhhhcccCccccCCCCCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCC--C--
Q 030405 7 GLKHFCVVVVNCCDADLYKQPRGLEDPEALARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNK--K-- 82 (178)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~--~-- 82 (178)
-++.+|..+.-+..+.++. ..+....+..+.++. ...+...+...|.+ ++|.|+..+|..++..... .
T Consensus 9 el~~~F~~fD~d~~G~i~~-----~el~~~lr~lg~~~t-~~el~~~~~~~D~d--g~g~I~~~eF~~l~~~~~~~~~~~ 80 (151)
T KOG0027|consen 9 ELKEAFQLFDKDGDGKISV-----EELGAVLRSLGQNPT-EEELRDLIKEIDLD--GDGTIDFEEFLDLMEKLGEEKTDE 80 (151)
T ss_pred HHHHHHHHHCCCCCCcccH-----HHHHHHHHHcCCCCC-HHHHHHHHHHhCCC--CCCeEcHHHHHHHHHhhhcccccc
Confidence 3566777777777777766 788888887766522 24577788888888 9999999999999866322 1
Q ss_pred --CHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 030405 83 --ESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVV 149 (178)
Q Consensus 83 --~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~ 149 (178)
....+..+|+.+|.+++|.|+..++..++..+.. ....+++..+++.+|.|++|.|+++||..++.
T Consensus 81 ~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~-~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 81 EASSEELKEAFRVFDKDGDGFISASELKKVLTSLGE-KLTDEECKEMIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred cccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCC-cCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHh
Confidence 2346899999999999999999999999999988 56688999999999999999999999998874
No 14
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.44 E-value=2.8e-12 Score=86.36 Aligned_cols=123 Identities=19% Similarity=0.290 Sum_probs=99.7
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCCC-HHHHHHHHHHHhcC--CCCcccHHHHHHHHHhhCCC
Q 030405 41 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKE-SLFADRVFDLFDTK--HNGILDFEEFARALSIFHPN 117 (178)
Q Consensus 41 ~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~-~~~~~~lf~~~d~~--~~g~i~~~ef~~~~~~~~~~ 117 (178)
.++++++..++++|..+|.. ++|+|+..+...++...+..+ +..+.+....+..+ +-..++|++|+-++..+.++
T Consensus 4 ~~~~d~~~e~ke~F~lfD~~--gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn 81 (152)
T KOG0030|consen 4 AFTPDQMEEFKEAFLLFDRT--GDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN 81 (152)
T ss_pred ccCcchHHHHHHHHHHHhcc--CcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc
Confidence 35677788999999999999 999999999999998866544 34455555555554 33679999999998877654
Q ss_pred C--ChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 030405 118 S--PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIID 169 (178)
Q Consensus 118 ~--~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~ 169 (178)
. ...+..-.-++.||++++|.|...|++++|.++ |+.++++|++.++.
T Consensus 82 k~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttl----Gekl~eeEVe~Lla 131 (152)
T KOG0030|consen 82 KDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTL----GEKLTEEEVEELLA 131 (152)
T ss_pred cccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHH----HhhccHHHHHHHHc
Confidence 3 334667788999999999999999999999998 99999999988765
No 15
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.42 E-value=1.1e-12 Score=94.82 Aligned_cols=127 Identities=17% Similarity=0.203 Sum_probs=98.9
Q ss_pred cccCccccCCCCCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhc-CCCCCHHHHHHHHHHHh
Q 030405 17 NCCDADLYKQPRGLEDPEALARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFK-TNKKESLFADRVFDLFD 95 (178)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~-~~~~~~~~~~~lf~~~d 95 (178)
.|..+.++. ...+.+.+...-....-......|..+|.+ ++|.|+..+|..++.. .....+..++..|+.+|
T Consensus 38 ~cP~G~~~~-----~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~--~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD 110 (193)
T KOG0044|consen 38 ECPSGRLTL-----EEFREIYASFFPDGDASKYAELVFRTFDKN--KDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYD 110 (193)
T ss_pred cCCCCccCH-----HHHHHHHHHHCCCCCHHHHHHHHHHHhccc--CCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeec
Confidence 444666666 778887777654455566777889999999 9999999999888765 33344455677899999
Q ss_pred cCCCCcccHHHHHHHHHhhCC----------CCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 030405 96 TKHNGILDFEEFARALSIFHP----------NSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVA 150 (178)
Q Consensus 96 ~~~~g~i~~~ef~~~~~~~~~----------~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~ 150 (178)
.+++|.|+++|++.++..+.. ...+++.+..+|+.+|.|+||.||.+||...+.+
T Consensus 111 ~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 111 LDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred CCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 999999999999887664321 1235577899999999999999999999988753
No 16
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.41 E-value=6.4e-12 Score=98.39 Aligned_cols=123 Identities=23% Similarity=0.332 Sum_probs=105.0
Q ss_pred CCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCC--CCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCC
Q 030405 42 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNK--KESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSP 119 (178)
Q Consensus 42 ~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~--~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 119 (178)
..++.-.++...|+.+|.+ ++|.++..++.+.+..... .....++.+|...|.|.+|.++|.+|...+. .
T Consensus 8 ~~~er~~r~~~lf~~lD~~--~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~------~ 79 (463)
T KOG0036|consen 8 TDEERDIRIRCLFKELDSK--NDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLD------N 79 (463)
T ss_pred CcHHHHHHHHHHHHHhccC--CCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHH------H
Confidence 3445557888999999988 8999999999988766332 3446678999999999999999999999884 3
Q ss_pred hhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhcc
Q 030405 120 IDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKVLSLIQ 176 (178)
Q Consensus 120 ~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~D 176 (178)
.+.++..+|+..|.+++|.|+.+|+.+.|+.+ |.++++++++.++++++.+..
T Consensus 80 ~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~----gi~l~de~~~k~~e~~d~~g~ 132 (463)
T KOG0036|consen 80 KELELYRIFQSIDLEHDGKIDPNEIWRYLKDL----GIQLSDEKAAKFFEHMDKDGK 132 (463)
T ss_pred hHHHHHHHHhhhccccCCccCHHHHHHHHHHh----CCccCHHHHHHHHHHhccCCC
Confidence 45678999999999999999999999999887 999999999999988887643
No 17
>PTZ00183 centrin; Provisional
Probab=99.40 E-value=8.4e-12 Score=87.94 Aligned_cols=133 Identities=14% Similarity=0.209 Sum_probs=103.1
Q ss_pred ccchhhhhhhcccCccccCCCCCCCcHHHHHhhcCC--CHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhc--CCCC
Q 030405 7 GLKHFCVVVVNCCDADLYKQPRGLEDPEALARETVF--SVSEIEALYELFKKISSAVIDDGLINKEEFQLALFK--TNKK 82 (178)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~--~~~~ 82 (178)
.|..+|..+....++.++. .++....+..++ +.. .+...|..+|.+ ++|.|+..+|..++.. ....
T Consensus 18 ~~~~~F~~~D~~~~G~i~~-----~e~~~~l~~~g~~~~~~---~~~~l~~~~d~~--~~g~i~~~eF~~~~~~~~~~~~ 87 (158)
T PTZ00183 18 EIREAFDLFDTDGSGTIDP-----KELKVAMRSLGFEPKKE---EIKQMIADVDKD--GSGKIDFEEFLDIMTKKLGERD 87 (158)
T ss_pred HHHHHHHHhCCCCCCcccH-----HHHHHHHHHhCCCCCHH---HHHHHHHHhCCC--CCCcEeHHHHHHHHHHHhcCCC
Confidence 3455666666666677666 777776665443 433 466777777887 8999999999987654 2233
Q ss_pred CHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 030405 83 ESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVA 150 (178)
Q Consensus 83 ~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~ 150 (178)
....++.+|+.+|.+++|.|+.++|..++..... ....+.+..+|..+|.+++|.|+.+||..++..
T Consensus 88 ~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~-~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 88 PREEILKAFRLFDDDKTGKISLKNLKRVAKELGE-TITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 4456789999999999999999999999987654 456788999999999999999999999998854
No 18
>PTZ00184 calmodulin; Provisional
Probab=99.36 E-value=2.2e-11 Score=84.84 Aligned_cols=134 Identities=15% Similarity=0.249 Sum_probs=103.1
Q ss_pred cccchhhhhhhcccCccccCCCCCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcC--CCCC
Q 030405 6 DGLKHFCVVVVNCCDADLYKQPRGLEDPEALARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKT--NKKE 83 (178)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~--~~~~ 83 (178)
..+..+|..+..+..+.++. ..+..+....+.+.. -..+...|..+|.+ ++|.|+..+|..++... ....
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~-----~e~~~~l~~~~~~~~-~~~~~~~~~~~d~~--~~g~i~~~ef~~~l~~~~~~~~~ 82 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITT-----KELGTVMRSLGQNPT-EAELQDMINEVDAD--GNGTIDFPEFLTLMARKMKDTDS 82 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCH-----HHHHHHHHHhCCCCC-HHHHHHHHHhcCcC--CCCcCcHHHHHHHHHHhccCCcH
Confidence 44666777777777777776 777776665443222 13566677777777 89999999999887542 1223
Q ss_pred HHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 030405 84 SLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMV 148 (178)
Q Consensus 84 ~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l 148 (178)
...+..+|+.+|.+++|.|+.++|..++..... ....+.+..+|+.+|.+++|.|+.+||..++
T Consensus 83 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 146 (149)
T PTZ00184 83 EEEIKEAFKVFDRDGNGFISAAELRHVMTNLGE-KLTDEEVDEMIREADVDGDGQINYEEFVKMM 146 (149)
T ss_pred HHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCC-CCCHHHHHHHHHhcCCCCCCcCcHHHHHHHH
Confidence 345789999999999999999999999987654 4567889999999999999999999999876
No 19
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=8.5e-10 Score=76.20 Aligned_cols=116 Identities=16% Similarity=0.272 Sum_probs=90.3
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhc--CCCCCHHHHHHHHHHHhcCCCCcccHHHHH
Q 030405 31 EDPEALARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFK--TNKKESLFADRVFDLFDTKHNGILDFEEFA 108 (178)
Q Consensus 31 ~~~~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~--~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~ 108 (178)
..+.--....+|.... ..+.+.....|++ +.|+|+.++|+..+.. ........+...|+.+|.+++|.|++.+|.
T Consensus 53 ~EL~vAmralGFE~~k-~ei~kll~d~dk~--~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lk 129 (172)
T KOG0028|consen 53 EELKVAMRALGFEPKK-EEILKLLADVDKE--GSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLK 129 (172)
T ss_pred HHHHHHHHHcCCCcch-HHHHHHHHhhhhc--cCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHH
Confidence 4444445555665221 2334444455655 8999999999987644 223356778999999999999999999999
Q ss_pred HHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 030405 109 RALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVA 150 (178)
Q Consensus 109 ~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~ 150 (178)
.+...+.. ...+++++...+.+|.|++|.|..+||..+|+.
T Consensus 130 rvakeLge-nltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 130 RVAKELGE-NLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHhCc-cccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 99999987 678899999999999999999999999998864
No 20
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.11 E-value=1.3e-09 Score=78.77 Aligned_cols=96 Identities=20% Similarity=0.291 Sum_probs=75.3
Q ss_pred HHHhhcccCCCCCc-ccHHHHHHHHhc--CCCCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCCh--h----HH
Q 030405 53 LFKKISSAVIDDGL-INKEEFQLALFK--TNKKESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPI--D----DK 123 (178)
Q Consensus 53 ~F~~~d~~~~~~g~-i~~~ef~~~l~~--~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~--~----e~ 123 (178)
.++.++.+ ++|. |++.+|...+.. ........++-+|+.+|.+++|.|+.+++..++..+...... + +-
T Consensus 71 I~~~f~~~--~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i 148 (187)
T KOG0034|consen 71 IIDRFDTD--GNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDI 148 (187)
T ss_pred HHHHHhcc--CCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHH
Confidence 44444555 6666 999999998766 223333467889999999999999999999999887764444 2 33
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHH
Q 030405 124 IEFSFQLYDLKQQGFIERQEVKQMVVA 150 (178)
Q Consensus 124 ~~~~F~~~D~d~~G~I~~~e~~~~l~~ 150 (178)
+.+.|..+|.|+||.|+.+||..++.+
T Consensus 149 ~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 149 VDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 677999999999999999999999854
No 21
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.10 E-value=2.9e-10 Score=68.63 Aligned_cols=62 Identities=26% Similarity=0.406 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHhhCCC---CChhHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 030405 87 ADRVFDLFDTKHNGILDFEEFARALSIFHPN---SPIDDKIEFSFQLYDLKQQGFIERQEVKQMV 148 (178)
Q Consensus 87 ~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~---~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l 148 (178)
++++|+.+|.+++|.|+.+||..++..+... ...++.+..+|+.+|.|++|.|+.+||..++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4677888888888888888888877766531 1223456667888888888888888887764
No 22
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.06 E-value=2.8e-09 Score=77.34 Aligned_cols=82 Identities=22% Similarity=0.408 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCC-CHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHH
Q 030405 47 IEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK-ESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIE 125 (178)
Q Consensus 47 i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~ 125 (178)
|+.|+..|..+|++ ++|.|+.+||..+|...+.. +....+.|++.+|....|.|.|++|+.+|..+.. +-
T Consensus 123 i~~Wr~vF~~~D~D--~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~-------lt 193 (221)
T KOG0037|consen 123 INQWRNVFRTYDRD--RSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQR-------LT 193 (221)
T ss_pred HHHHHHHHHhcccC--CCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHH-------HH
Confidence 34555555555555 55555555555555553322 2334455555555544555555555555554432 44
Q ss_pred HHHHhhCCCCCC
Q 030405 126 FSFQLYDLKQQG 137 (178)
Q Consensus 126 ~~F~~~D~d~~G 137 (178)
.+|+.+|++.+|
T Consensus 194 ~~Fr~~D~~q~G 205 (221)
T KOG0037|consen 194 EAFRRRDTAQQG 205 (221)
T ss_pred HHHHHhccccce
Confidence 555555555555
No 23
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.90 E-value=1.8e-08 Score=65.43 Aligned_cols=68 Identities=22% Similarity=0.416 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCcccHHHHHHHHH
Q 030405 42 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALS 112 (178)
Q Consensus 42 ~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~ 112 (178)
++.+++..+...|..+|.+ ++|.|+..++..++...+. ....++.++..+|.+++|.|+|++|+.++.
T Consensus 4 ls~~~~~~l~~~F~~~D~d--~~G~Is~~el~~~l~~~~~-~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKN--QDGTVTGAQAKPILLKSGL-PQTLLAKIWNLADIDNDGELDKDEFALAMH 71 (96)
T ss_pred CCHHHHHHHHHHHHHhCCC--CCCeEeHHHHHHHHHHcCC-CHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 4555556666666666655 5666666666655544322 233345555555555555555555555443
No 24
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.90 E-value=1.3e-08 Score=64.94 Aligned_cols=64 Identities=25% Similarity=0.295 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhcc-cCCCCCcccHHHHHHHHhc-CCC-CCH-HHHHHHHHHHhcCCCCcccHHHHHHHHH
Q 030405 47 IEALYELFKKISS-AVIDDGLINKEEFQLALFK-TNK-KES-LFADRVFDLFDTKHNGILDFEEFARALS 112 (178)
Q Consensus 47 i~~l~~~F~~~d~-~~~~~g~i~~~ef~~~l~~-~~~-~~~-~~~~~lf~~~d~~~~g~i~~~ef~~~~~ 112 (178)
+..|...|+.+|+ + ++|+|+..+|+.++.. .+. ... ..++.+++.+|.|++|.|+|+||..++.
T Consensus 7 i~~l~~~F~~fd~~~--~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~ 74 (89)
T cd05022 7 IETLVSNFHKASVKG--GKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIG 74 (89)
T ss_pred HHHHHHHHHHHhCCC--CCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 4455555555555 4 5555555555555544 221 112 3445555555555555555555554443
No 25
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.89 E-value=1e-08 Score=61.80 Aligned_cols=61 Identities=36% Similarity=0.586 Sum_probs=51.3
Q ss_pred HHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCC-----CHHHHHHHHHHHhcCCCCcccHHHHHHHH
Q 030405 49 ALYELFKKISSAVIDDGLINKEEFQLALFKTNKK-----ESLFADRVFDLFDTKHNGILDFEEFARAL 111 (178)
Q Consensus 49 ~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~-----~~~~~~~lf~~~d~~~~g~i~~~ef~~~~ 111 (178)
+|+..|..+|.+ ++|+|+.++|..++...... ....+..+|+.+|.+++|.|+|+||..++
T Consensus 1 ~l~~~F~~~D~d--~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKD--GDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTT--SSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCC--ccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 478999999999 99999999999998774432 22346778999999999999999998764
No 26
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=2.6e-08 Score=76.24 Aligned_cols=103 Identities=21% Similarity=0.287 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCC--CCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChh
Q 030405 44 VSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNK--KESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPID 121 (178)
Q Consensus 44 ~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~--~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 121 (178)
.+.+.+-..+|...|.+ ++|.++.++|..++.+-.. -....+..-+.-.|.|++|.|+++||+.-+..-..++..+
T Consensus 159 ~km~~rDe~rFk~AD~d--~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~ep 236 (325)
T KOG4223|consen 159 KKMIARDEERFKAADQD--GDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEP 236 (325)
T ss_pred HHHHHHHHHHHhhcccC--CCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCc
Confidence 45678889999999999 9999999999998855221 1233467778889999999999999999776554321111
Q ss_pred ----HHHHHHHHhhCCCCCCceeHHHHHHHH
Q 030405 122 ----DKIEFSFQLYDLKQQGFIERQEVKQMV 148 (178)
Q Consensus 122 ----e~~~~~F~~~D~d~~G~I~~~e~~~~l 148 (178)
.+-...|...|+|++|+++.+|+.+.+
T Consensus 237 eWv~~Ere~F~~~~DknkDG~L~~dEl~~WI 267 (325)
T KOG4223|consen 237 EWVLTEREQFFEFRDKNKDGKLDGDELLDWI 267 (325)
T ss_pred ccccccHHHHHHHhhcCCCCccCHHHHhccc
Confidence 223467888899999999999999887
No 27
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.84 E-value=2.7e-08 Score=63.54 Aligned_cols=66 Identities=15% Similarity=0.112 Sum_probs=57.4
Q ss_pred HHHHHHHHhc-CCCCcccHHHHHHHHHh-hCCCCChh-HHHHHHHHhhCCCCCCceeHHHHHHHHHHHHh
Q 030405 87 ADRVFDLFDT-KHNGILDFEEFARALSI-FHPNSPID-DKIEFSFQLYDLKQQGFIERQEVKQMVVATLT 153 (178)
Q Consensus 87 ~~~lf~~~d~-~~~g~i~~~ef~~~~~~-~~~~~~~~-e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~ 153 (178)
+..+|+.||. +++|.|+..||..++.. +.. .... +.+..+++.+|.|++|.|+++||..++..++.
T Consensus 10 l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~-~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~ 78 (89)
T cd05022 10 LVSNFHKASVKGGKESLTASEFQELLTQQLPH-LLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAK 78 (89)
T ss_pred HHHHHHHHhCCCCCCeECHHHHHHHHHHHhhh-hccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 4689999999 99999999999999988 543 2344 78999999999999999999999999988744
No 28
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.82 E-value=4.7e-08 Score=63.08 Aligned_cols=67 Identities=21% Similarity=0.489 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhhc-ccCCCCC-cccHHHHHHHHhc------CCCCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhh
Q 030405 46 EIEALYELFKKIS-SAVIDDG-LINKEEFQLALFK------TNKKESLFADRVFDLFDTKHNGILDFEEFARALSIF 114 (178)
Q Consensus 46 ~i~~l~~~F~~~d-~~~~~~g-~i~~~ef~~~l~~------~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~ 114 (178)
.+..+.+.|+.+| .+ ++| +|+..+|+.++.. ........++.+++.+|.+++|.|+|+||+.++..+
T Consensus 8 a~~~~~~~F~~~dd~d--gdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 8 AMDTLIRIFHNYSGKE--GDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHccC--CCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 3555666666666 45 555 3777777666633 111233445666666666666666666666655443
No 29
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.79 E-value=1.4e-07 Score=74.47 Aligned_cols=130 Identities=21% Similarity=0.225 Sum_probs=100.1
Q ss_pred cchhhhhhhcccCccccCCCCCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCCCHHHH
Q 030405 8 LKHFCVVVVNCCDADLYKQPRGLEDPEALARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFA 87 (178)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~ 87 (178)
|..+|..|..+.++.+.- .++.+...........-+.....|...|.+ ++|.++.++|+..+... +..+
T Consensus 16 ~~~lf~~lD~~~~g~~d~-----~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~--~dg~vDy~eF~~Y~~~~----E~~l 84 (463)
T KOG0036|consen 16 IRCLFKELDSKNDGQVDL-----DQLEKGLEKLDHPKPNYEAAKMLFSAMDAN--RDGRVDYSEFKRYLDNK----ELEL 84 (463)
T ss_pred HHHHHHHhccCCCCceeH-----HHHHHHHHhcCCCCCchHHHHHHHHhcccC--cCCcccHHHHHHHHHHh----HHHH
Confidence 445566666666665433 334332233333333445677788888888 99999999999988554 3445
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 030405 88 DRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVV 149 (178)
Q Consensus 88 ~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~ 149 (178)
.++|...|.+++|.|+..|.-..+..+.- +..++++..+|+-.|+++++.|+.+|+++.+.
T Consensus 85 ~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi-~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 85 YRIFQSIDLEHDGKIDPNEIWRYLKDLGI-QLSDEKAAKFFEHMDKDGKATIDLEEWRDHLL 145 (463)
T ss_pred HHHHhhhccccCCccCHHHHHHHHHHhCC-ccCHHHHHHHHHHhccCCCeeeccHHHHhhhh
Confidence 78999999999999999999999998887 57788999999999999999999999999873
No 30
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.77 E-value=8.5e-08 Score=61.18 Aligned_cols=63 Identities=25% Similarity=0.431 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhc-ccCCCCC-cccHHHHHHHHhc-----CCCC-CHHHHHHHHHHHhcCCCCcccHHHHHHHH
Q 030405 47 IEALYELFKKIS-SAVIDDG-LINKEEFQLALFK-----TNKK-ESLFADRVFDLFDTKHNGILDFEEFARAL 111 (178)
Q Consensus 47 i~~l~~~F~~~d-~~~~~~g-~i~~~ef~~~l~~-----~~~~-~~~~~~~lf~~~d~~~~g~i~~~ef~~~~ 111 (178)
+..|.+.|+.+| ++ ++| +|+..+|+.++.. .+.. ....++.+++.+|.+++|.|+|++|..++
T Consensus 7 ~~~l~~aF~~fD~~d--gdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li 77 (88)
T cd05027 7 MVALIDVFHQYSGRE--GDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFV 77 (88)
T ss_pred HHHHHHHHHHhcccC--CCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 444555555554 44 455 3555555555543 2221 22334455555555555555555554443
No 31
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.75 E-value=9.2e-08 Score=55.90 Aligned_cols=61 Identities=21% Similarity=0.351 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 030405 87 ADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMV 148 (178)
Q Consensus 87 ~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l 148 (178)
+..+|+.+|.+++|.|++++|..++..... ..+.+.+..+|+.+|.+++|.|+.++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGE-GLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 356788888888899999999888887755 5667778889999999999999999987764
No 32
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.74 E-value=1.1e-07 Score=60.73 Aligned_cols=66 Identities=15% Similarity=0.161 Sum_probs=57.5
Q ss_pred HHHHHHHHh-cCCCC-cccHHHHHHHHHh-----hCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHh
Q 030405 87 ADRVFDLFD-TKHNG-ILDFEEFARALSI-----FHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLT 153 (178)
Q Consensus 87 ~~~lf~~~d-~~~~g-~i~~~ef~~~~~~-----~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~ 153 (178)
+..+|+.+| .+++| .|+..++..++.. +.. ..+++.+..+++.+|.|++|.|+++||..++..++.
T Consensus 10 l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~-~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~ 82 (88)
T cd05027 10 LIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEE-IKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTT 82 (88)
T ss_pred HHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcC-CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 578999998 78999 5999999999988 544 456778999999999999999999999999987644
No 33
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.72 E-value=2e-08 Score=50.30 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=24.5
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 030405 123 KIEFSFQLYDLKQQGFIERQEVKQMVVA 150 (178)
Q Consensus 123 ~~~~~F~~~D~d~~G~I~~~e~~~~l~~ 150 (178)
+++.+|+.||+|++|+|+.+||..+|++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 3678999999999999999999998865
No 34
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.72 E-value=8.2e-08 Score=55.45 Aligned_cols=50 Identities=28% Similarity=0.445 Sum_probs=37.5
Q ss_pred CCcccHHHHHHHHHhhCCCC-ChhHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 030405 99 NGILDFEEFARALSIFHPNS-PIDDKIEFSFQLYDLKQQGFIERQEVKQMVV 149 (178)
Q Consensus 99 ~g~i~~~ef~~~~~~~~~~~-~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~ 149 (178)
+|.|+.++|..++..+.. . ..+++++.+|+.+|.|++|.|+.+||..++.
T Consensus 2 ~G~i~~~~~~~~l~~~g~-~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGI-KDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSEEEHHHHHHHHHHTTS-SSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCC-CCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 577888888888855544 3 5566688888888888888888888887764
No 35
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.72 E-value=1.3e-07 Score=61.40 Aligned_cols=73 Identities=12% Similarity=0.198 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhh-cCCCCCH
Q 030405 86 FADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTE-SGMNLSD 161 (178)
Q Consensus 86 ~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~-~~~~l~~ 161 (178)
.+..+|..+|.+++|.|+.+++..++... +.+.+.+..+|+.+|.+++|.|+.+||..++..+.+. .|.+++.
T Consensus 11 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~---~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~~~ 84 (96)
T smart00027 11 KYEQIFRSLDKNQDGTVTGAQAKPILLKS---GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPIPA 84 (96)
T ss_pred HHHHHHHHhCCCCCCeEeHHHHHHHHHHc---CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCCCc
Confidence 35789999999999999999999999774 3466789999999999999999999999999877443 3555554
No 36
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.72 E-value=1.3e-07 Score=56.84 Aligned_cols=61 Identities=16% Similarity=0.243 Sum_probs=42.0
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 030405 88 DRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 151 (178)
Q Consensus 88 ~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~ 151 (178)
+.+|..+|.+++|.|+.+++..++.... .+.+.++.+|+.+|.+++|.|+.+||..++..+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g---~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG---LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC---CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 3567777777777777777777665542 245567777777777777777777777776554
No 37
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.71 E-value=1.2e-07 Score=60.43 Aligned_cols=69 Identities=25% Similarity=0.433 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhhcc--cCCCCCcccHHHHHHHHhc-CCC-----CCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhh
Q 030405 44 VSEIEALYELFKKISS--AVIDDGLINKEEFQLALFK-TNK-----KESLFADRVFDLFDTKHNGILDFEEFARALSIF 114 (178)
Q Consensus 44 ~~~i~~l~~~F~~~d~--~~~~~g~i~~~ef~~~l~~-~~~-----~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~ 114 (178)
+++++.+...|..+|+ + ++|.|+..+|..++.. .+. ..+..+..++..+|.+++|.|+|++|+.++...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~--~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEG--DKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccC--CCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 3466777778888877 7 7788888888777643 111 124557777777777777778888887766543
No 38
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.67 E-value=1.6e-07 Score=56.38 Aligned_cols=61 Identities=33% Similarity=0.496 Sum_probs=52.8
Q ss_pred HHHHHhhcccCCCCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhh
Q 030405 51 YELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSIF 114 (178)
Q Consensus 51 ~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~ 114 (178)
+..|..+|++ ++|.|+..++..++...+. ....++.+|+.++.+++|.|+|++|+.++..+
T Consensus 2 ~~~F~~~D~~--~~G~i~~~el~~~l~~~g~-~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPD--GDGLISGDEARPFLGKSGL-PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCC--CCCcCcHHHHHHHHHHcCC-CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 4678889999 9999999999999877654 56678999999999999999999999988654
No 39
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.66 E-value=2.4e-07 Score=59.20 Aligned_cols=68 Identities=28% Similarity=0.424 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHh-hcccCCCCC-cccHHHHHHHHhcCC------CCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhh
Q 030405 45 SEIEALYELFKK-ISSAVIDDG-LINKEEFQLALFKTN------KKESLFADRVFDLFDTKHNGILDFEEFARALSIF 114 (178)
Q Consensus 45 ~~i~~l~~~F~~-~d~~~~~~g-~i~~~ef~~~l~~~~------~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~ 114 (178)
..+..|...|+. ++.+ ++| .|+..||+.++.... ......++.+++.+|.+++|.|+|+||+.++..+
T Consensus 6 ~~i~~l~~~F~~y~~~d--g~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 6 RCIESLIAVFQKYAGKD--GDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHhccC--CCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 346777888877 5565 544 788888887775521 2233456777777777777777777777665543
No 40
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.66 E-value=3.2e-07 Score=59.17 Aligned_cols=66 Identities=14% Similarity=0.079 Sum_probs=54.6
Q ss_pred HHHHHHHHh-cCCCC-cccHHHHHHHHHhhC----CCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHH
Q 030405 87 ADRVFDLFD-TKHNG-ILDFEEFARALSIFH----PNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATL 152 (178)
Q Consensus 87 ~~~lf~~~d-~~~~g-~i~~~ef~~~~~~~~----~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~ 152 (178)
+.++|..+| .+++| .|+..|+..++.... ........+..+++.+|.|++|.|+++||..++..++
T Consensus 12 ~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 12 LIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 467799999 67888 599999999986632 1133567899999999999999999999999998874
No 41
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.65 E-value=3.2e-07 Score=59.06 Aligned_cols=65 Identities=25% Similarity=0.420 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhc-ccCCCCC-cccHHHHHHHHhc-CC-----CCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHh
Q 030405 47 IEALYELFKKIS-SAVIDDG-LINKEEFQLALFK-TN-----KKESLFADRVFDLFDTKHNGILDFEEFARALSI 113 (178)
Q Consensus 47 i~~l~~~F~~~d-~~~~~~g-~i~~~ef~~~l~~-~~-----~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~ 113 (178)
+..+.+.|+.+| .+ ++| .|+..+|+.++.. .+ ......++.+++.+|.+++|.|+|++|+.++..
T Consensus 8 ~~~l~~~F~~fDd~d--g~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 8 METLINVFHAHSGKE--GDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHHhccc--CCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 345666666664 66 666 3666666666532 11 112344556666666666666666666555443
No 42
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.65 E-value=3.7e-07 Score=58.23 Aligned_cols=66 Identities=20% Similarity=0.332 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhcc-cCCC-CCcccHHHHHHHHhc----CCCCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHh
Q 030405 46 EIEALYELFKKISS-AVID-DGLINKEEFQLALFK----TNKKESLFADRVFDLFDTKHNGILDFEEFARALSI 113 (178)
Q Consensus 46 ~i~~l~~~F~~~d~-~~~~-~g~i~~~ef~~~l~~----~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~ 113 (178)
.+..|...|++++. + + +|+|+..+|+.++.. ........+..+++.+|.+++|.|+|++|...+..
T Consensus 8 ~~~~~i~~F~~y~~~~--~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 8 AIGLLVAIFHKYSGRE--GDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHHHHccC--CCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 34555666666654 2 3 456666666666631 12223444566666666666666666666555543
No 43
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.64 E-value=3.2e-07 Score=59.27 Aligned_cols=62 Identities=21% Similarity=0.457 Sum_probs=29.2
Q ss_pred HHHHHHHHhhcc-cCCC-CCcccHHHHHHHHhc-C----C-CCCHHHHHHHHHHHhcCCCCcccHHHHHHHH
Q 030405 48 EALYELFKKISS-AVID-DGLINKEEFQLALFK-T----N-KKESLFADRVFDLFDTKHNGILDFEEFARAL 111 (178)
Q Consensus 48 ~~l~~~F~~~d~-~~~~-~g~i~~~ef~~~l~~-~----~-~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~ 111 (178)
..++..|..+|. + + +|.|+..++..++.. . + ......++.+++.+|.+++|.|+|++|+.++
T Consensus 8 ~~l~~~F~~~D~~d--g~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~ 77 (94)
T cd05031 8 ESLILTFHRYAGKD--GDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLV 77 (94)
T ss_pred HHHHHHHHHHhccC--CCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 445555555553 4 4 355555555555432 0 1 1122334455555555555555555555444
No 44
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.63 E-value=4.1e-07 Score=58.52 Aligned_cols=68 Identities=18% Similarity=0.152 Sum_probs=56.3
Q ss_pred HHHHHHHHHh-cCCCC-cccHHHHHHHHHh-hC---CCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHh
Q 030405 86 FADRVFDLFD-TKHNG-ILDFEEFARALSI-FH---PNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLT 153 (178)
Q Consensus 86 ~~~~lf~~~d-~~~~g-~i~~~ef~~~~~~-~~---~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~ 153 (178)
.+.++|..+| .+++| .|+..++..++.. +. ....+.+.+..+|+.+|.|++|.|+.+||..++..++.
T Consensus 10 ~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~ 83 (92)
T cd05025 10 TLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTV 83 (92)
T ss_pred HHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHH
Confidence 3578999997 99999 5999999999975 31 11235678999999999999999999999999987643
No 45
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.61 E-value=8.5e-07 Score=63.76 Aligned_cols=126 Identities=17% Similarity=0.198 Sum_probs=95.5
Q ss_pred CccccCCCCCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCCCH-HHHHHHHHHHhcCC
Q 030405 20 DADLYKQPRGLEDPEALARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKES-LFADRVFDLFDTKH 98 (178)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~-~~~~~lf~~~d~~~ 98 (178)
.+...+..++..-+.-+.....|+.++|+.+...|..+|.+ .+|+|+..+++-++.+.+.+.+ .-++.+....|.|.
T Consensus 71 ~~~~~~~r~s~kv~n~yteF~eFsrkqIk~~~~~Fk~yDe~--rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~ 148 (244)
T KOG0041|consen 71 QGAGVPSRDSLKVFNVYTEFSEFSRKQIKDAESMFKQYDED--RDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDF 148 (244)
T ss_pred cccCCcccccccccchhhhhhHHHHHHHHHHHHHHHHhccc--ccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhccc
Confidence 33344444444555556677789999999999999999999 9999999999999988776655 34688999999999
Q ss_pred CCcccHHHHHHHHHhhCCCCCh-hHHHHHHHHh--hCCCCCCceeHHHHHHH
Q 030405 99 NGILDFEEFARALSIFHPNSPI-DDKIEFSFQL--YDLKQQGFIERQEVKQM 147 (178)
Q Consensus 99 ~g~i~~~ef~~~~~~~~~~~~~-~e~~~~~F~~--~D~d~~G~I~~~e~~~~ 147 (178)
+|+|+|.+|+.++......... ++.+..+=+. .|+...|+.....|-..
T Consensus 149 dgklSfreflLIfrkaaagEL~~ds~~~~LAr~~eVDVskeGV~GAknFFeA 200 (244)
T KOG0041|consen 149 DGKLSFREFLLIFRKAAAGELQEDSGLLRLARLSEVDVSKEGVSGAKNFFEA 200 (244)
T ss_pred ccchhHHHHHHHHHHHhccccccchHHHHHHHhcccchhhhhhhhHHHHHHH
Confidence 9999999999988765542222 2334344344 79999998888876554
No 46
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.61 E-value=3.4e-07 Score=59.18 Aligned_cols=64 Identities=11% Similarity=0.130 Sum_probs=54.2
Q ss_pred HHHHHHHHhc-CC-CCcccHHHHHHHHHh-----hCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 030405 87 ADRVFDLFDT-KH-NGILDFEEFARALSI-----FHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 151 (178)
Q Consensus 87 ~~~lf~~~d~-~~-~g~i~~~ef~~~~~~-----~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~ 151 (178)
+..+|..+|. ++ +|.|+..|+..++.. +.. ..+.+.+..+|+.+|.+++|.|+.+||..++..+
T Consensus 10 l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~-~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 10 LILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKN-QKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhc-cccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 5789999997 86 699999999998875 222 3456789999999999999999999999998764
No 47
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.58 E-value=3.1e-06 Score=58.46 Aligned_cols=128 Identities=16% Similarity=0.184 Sum_probs=98.3
Q ss_pred cchhhhhhhcccCccccCCCCCCCcHHHHHhhcC--CCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhc--CCCCC
Q 030405 8 LKHFCVVVVNCCDADLYKQPRGLEDPEALARETV--FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFK--TNKKE 83 (178)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~--~~~~~ 83 (178)
++.+|.....++++.+-+ ++++......+ .+.++ |-..+.. ..|.|++.-|..++.. .+..+
T Consensus 34 fKEAF~~mDqnrDG~Idk-----eDL~d~~aSlGk~~~d~e---lDaM~~E------a~gPINft~FLTmfGekL~gtdp 99 (171)
T KOG0031|consen 34 FKEAFNLMDQNRDGFIDK-----EDLRDMLASLGKIASDEE---LDAMMKE------APGPINFTVFLTMFGEKLNGTDP 99 (171)
T ss_pred HHHHHHHHhccCCCcccH-----HHHHHHHHHcCCCCCHHH---HHHHHHh------CCCCeeHHHHHHHHHHHhcCCCH
Confidence 345566666666666666 67766555433 23333 3334433 5789999999998855 55666
Q ss_pred HHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 030405 84 SLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVA 150 (178)
Q Consensus 84 ~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~ 150 (178)
+..+-..|+.||.+++|.|.-+.++.++..... .-.++++..+|+.+-.|..|.|++..|..+|..
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gD-r~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGD-RFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcc-cCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 777889999999999999999999999998766 567889999999999999999999999999853
No 48
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.57 E-value=1.4e-06 Score=77.90 Aligned_cols=123 Identities=15% Similarity=0.294 Sum_probs=97.2
Q ss_pred hhcCCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCC--------CHHHHHHHHHHHhcCCCCcccHHHHHH
Q 030405 38 RETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK--------ESLFADRVFDLFDTKHNGILDFEEFAR 109 (178)
Q Consensus 38 ~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~--------~~~~~~~lf~~~d~~~~g~i~~~ef~~ 109 (178)
..++.|++++..+.-+|+-||++ .+|+++..+|..||...+.. +++..+.++..+|++.+|.|+..+|..
T Consensus 2243 n~~GVtEe~L~EFs~~fkhFDke--k~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~a 2320 (2399)
T KOG0040|consen 2243 NHNGVTEEQLKEFSMMFKHFDKE--KNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMA 2320 (2399)
T ss_pred ccCCCCHHHHHHHHHHHHHhchh--hccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHH
Confidence 34688999999999999999999 99999999999999774432 345789999999999999999999999
Q ss_pred HHHh-hCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhh
Q 030405 110 ALSI-FHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKVLSL 174 (178)
Q Consensus 110 ~~~~-~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 174 (178)
+|.. -+.+-...+.+..+|+.+|. +..+|+.+++.+- ++.++.+-++.+|-..
T Consensus 2321 fmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~-----------ltreqaefc~s~m~~~ 2374 (2399)
T KOG0040|consen 2321 FMISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQN-----------LTREQAEFCMSKMKPY 2374 (2399)
T ss_pred HHHhcccccccchHHHHHHHHHhhc-CCccccHHHHHhc-----------CCHHHHHHHHHHhhhh
Confidence 8764 33333455689999999998 8889999987543 4555555555554433
No 49
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.57 E-value=6.5e-07 Score=57.10 Aligned_cols=66 Identities=14% Similarity=0.093 Sum_probs=55.4
Q ss_pred HHHHHHHhc-CC-CCcccHHHHHHHHHh---hCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhh
Q 030405 88 DRVFDLFDT-KH-NGILDFEEFARALSI---FHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTE 154 (178)
Q Consensus 88 ~~lf~~~d~-~~-~g~i~~~ef~~~~~~---~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~ 154 (178)
-.+|..++. ++ +|.|+.+||..++.. +.. ..+.+.+..+|+.+|.|++|.|+++||..++..++.+
T Consensus 13 i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~-k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~~ 83 (88)
T cd05029 13 VAIFHKYSGREGDKNTLSKKELKELIQKELTIGS-KLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALALI 83 (88)
T ss_pred HHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 467888988 56 789999999999974 333 4577899999999999999999999999999877443
No 50
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.56 E-value=4.4e-07 Score=60.78 Aligned_cols=59 Identities=24% Similarity=0.262 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 030405 85 LFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMV 148 (178)
Q Consensus 85 ~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l 148 (178)
..+...|..+|.|++|.|+..|+..+. + ...+..+..+|+.+|.|++|.||.+||..++
T Consensus 48 ~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l---~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 48 DPVGWMFNQLDGNYDGKLSHHELAPIR--L---DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHH--c---cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 446789999999999999999998765 2 3446778899999999999999999999988
No 51
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.53 E-value=1.3e-06 Score=69.94 Aligned_cols=120 Identities=23% Similarity=0.361 Sum_probs=90.8
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCCCHHHHHHHHHH----HhcCCCCcccHHHHHHHHHhhCC
Q 030405 41 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDL----FDTKHNGILDFEEFARALSIFHP 116 (178)
Q Consensus 41 ~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~----~d~~~~g~i~~~ef~~~~~~~~~ 116 (178)
.|+-+....++-.|-.+|.+ ++|.|+++++...- .+.-.+..++++|.. +-...+|.++|++|+.++-.+..
T Consensus 271 ~FS~e~f~viy~kFweLD~D--hd~lidk~~L~ry~--d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~ 346 (493)
T KOG2562|consen 271 YFSYEHFYVIYCKFWELDTD--HDGLIDKEDLKRYG--DHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEED 346 (493)
T ss_pred heeHHHHHHHHHHHhhhccc--cccccCHHHHHHHh--ccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhcc
Confidence 35666667777889899999 99999999998533 223336678999993 33345789999999998887766
Q ss_pred CCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHh---hcC-CCCCHHHHH
Q 030405 117 NSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLT---ESG-MNLSDDVIE 165 (178)
Q Consensus 117 ~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~---~~~-~~l~~~~~~ 165 (178)
......+..+|+.+|.+++|.|+..|++.+....++ ..| ++++-+++-
T Consensus 347 -k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l 398 (493)
T KOG2562|consen 347 -KDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDAL 398 (493)
T ss_pred -CCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHH
Confidence 566778999999999999999999999988876544 333 345544433
No 52
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.50 E-value=8e-07 Score=56.62 Aligned_cols=65 Identities=17% Similarity=0.209 Sum_probs=54.5
Q ss_pred HHHHHHHHhc--CCCCcccHHHHHHHHHhhCCC----CChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 030405 87 ADRVFDLFDT--KHNGILDFEEFARALSIFHPN----SPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 151 (178)
Q Consensus 87 ~~~lf~~~d~--~~~g~i~~~ef~~~~~~~~~~----~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~ 151 (178)
+..+|..+|. +++|.|+..+|..++...... ....+.+..+++.+|.+++|.|+.++|..++..+
T Consensus 10 l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 10 IIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 5778999999 899999999999998752211 1246789999999999999999999999998765
No 53
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.50 E-value=1.4e-06 Score=69.47 Aligned_cols=120 Identities=15% Similarity=0.153 Sum_probs=82.0
Q ss_pred HHHHHHHhhcccCCCCCcccHHHHHHHHhc-CCCCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCC---------
Q 030405 49 ALYELFKKISSAVIDDGLINKEEFQLALFK-TNKKESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNS--------- 118 (178)
Q Consensus 49 ~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~-~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~--------- 118 (178)
.|.+.|...|+. .+|+++.+++..++.. .++... +----=+....+.+|.+.|.+....+..-.-..
T Consensus 465 dL~~eF~~~D~~--ksG~lsis~Wa~~mE~i~~L~LP-Wr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 465 DLEDEFRKYDPK--KSGKLSISHWAKCMENITGLNLP-WRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred HHHHHHHhcChh--hcCeeeHHHHHHHHHHHhcCCCc-HHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 466789999988 9999999999999866 222221 111122334456677888887765543211000
Q ss_pred --ChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 030405 119 --PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKV 171 (178)
Q Consensus 119 --~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 171 (178)
.....+..+|+.+|.|++|.|+.+||+++.+-+-.++.-+++..++.++++.|
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~m 596 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSM 596 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhh
Confidence 01234677999999999999999999999888766666788888887776654
No 54
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=1.4e-06 Score=66.98 Aligned_cols=122 Identities=20% Similarity=0.271 Sum_probs=86.6
Q ss_pred HHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCC-CCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCC------CCC
Q 030405 47 IEALYELFKKISSAVIDDGLINKEEFQLALFKTNK-KESLFADRVFDLFDTKHNGILDFEEFARALSIFHP------NSP 119 (178)
Q Consensus 47 i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~-~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~------~~~ 119 (178)
-.++...+..+|.+ ++|.|+..++..++..... .....+.+-+..+|.+.+|.|+|+++...+..... ...
T Consensus 76 ~~rl~~l~~~iD~~--~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e 153 (325)
T KOG4223|consen 76 QERLGKLVPKIDSD--SDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEE 153 (325)
T ss_pred HHHHHHHHhhhcCC--CCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccch
Confidence 46788888888877 8999999999998755221 11234577788899999999999999987764210 000
Q ss_pred hhH-------HHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhccC
Q 030405 120 IDD-------KIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKVLSLIQL 177 (178)
Q Consensus 120 ~~e-------~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~D~ 177 (178)
..+ .-..-|+..|.|++|.++++||..+| .++-.+.-..-++++.+.++|.
T Consensus 154 ~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFL-------HPEe~p~M~~iVi~Etl~d~Dk 211 (325)
T KOG4223|consen 154 DNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFL-------HPEEHPHMKDIVIAETLEDIDK 211 (325)
T ss_pred hcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhcc-------ChhhcchHHHHHHHHHHhhccc
Confidence 001 13457999999999999999999997 4333344444567777777663
No 55
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.46 E-value=1.3e-06 Score=59.74 Aligned_cols=97 Identities=16% Similarity=0.316 Sum_probs=76.6
Q ss_pred HHHHHHHhhcccCCCCCcccHHHHHHHHhc--CCCCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHH--
Q 030405 49 ALYELFKKISSAVIDDGLINKEEFQLALFK--TNKKESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKI-- 124 (178)
Q Consensus 49 ~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~--~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~-- 124 (178)
++-..| +.+ |.|.++..+|..++.- ...+....+.-.|+.+|.++++.|.-.++...+..+.+.+..++++
T Consensus 75 ri~e~F---SeD--G~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~ 149 (189)
T KOG0038|consen 75 RICEVF---SED--GRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVEL 149 (189)
T ss_pred HHHHHh---ccC--CCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHH
Confidence 344444 445 8999999999998644 1222234467789999999999999999999999999877777765
Q ss_pred --HHHHHhhCCCCCCceeHHHHHHHHHH
Q 030405 125 --EFSFQLYDLKQQGFIERQEVKQMVVA 150 (178)
Q Consensus 125 --~~~F~~~D~d~~G~I~~~e~~~~l~~ 150 (178)
.++....|.||+|.|+..||..++.+
T Consensus 150 i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 150 ICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 45677889999999999999999854
No 56
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.46 E-value=9.5e-07 Score=50.90 Aligned_cols=51 Identities=37% Similarity=0.556 Sum_probs=43.0
Q ss_pred CCCcccHHHHHHHHhcCCC--CCHHHHHHHHHHHhcCCCCcccHHHHHHHHHh
Q 030405 63 DDGLINKEEFQLALFKTNK--KESLFADRVFDLFDTKHNGILDFEEFARALSI 113 (178)
Q Consensus 63 ~~g~i~~~ef~~~l~~~~~--~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~ 113 (178)
++|.|+.++|..++...+. .....+..+|..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 3699999999999965433 45566899999999999999999999998753
No 57
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.44 E-value=2.3e-06 Score=54.70 Aligned_cols=67 Identities=16% Similarity=0.140 Sum_probs=54.0
Q ss_pred HHHHHHH-HhcCCCC-cccHHHHHHHHHhhC----CCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHh
Q 030405 87 ADRVFDL-FDTKHNG-ILDFEEFARALSIFH----PNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLT 153 (178)
Q Consensus 87 ~~~lf~~-~d~~~~g-~i~~~ef~~~~~~~~----~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~ 153 (178)
+..+|.. ++.+++| .|+.+||..++.... ........+..+++.+|.|++|.|+++||..++..+..
T Consensus 11 l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~ 83 (89)
T cd05023 11 LIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAV 83 (89)
T ss_pred HHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 3567888 6677765 999999999998652 22344578999999999999999999999999988743
No 58
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.44 E-value=1.8e-06 Score=57.79 Aligned_cols=64 Identities=13% Similarity=0.220 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCcccHHHHHHHH
Q 030405 43 SVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARAL 111 (178)
Q Consensus 43 ~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~ 111 (178)
.+.....+.-.|..+|.+ ++|.|+.+|+..+. ....+..+..+|..+|.|++|.||++||..++
T Consensus 43 ~~~~~~~l~w~F~~lD~d--~DG~Ls~~EL~~~~---l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGN--YDGKLSHHELAPIR---LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred hHHHHHHHHHHHHHHCCC--CCCcCCHHHHHHHH---ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 456678899999999999 99999999999876 22334557899999999999999999999988
No 59
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.43 E-value=3.1e-06 Score=53.88 Aligned_cols=68 Identities=18% Similarity=0.406 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhc------CCCCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhC
Q 030405 45 SEIEALYELFKKISSAVIDDGLINKEEFQLALFK------TNKKESLFADRVFDLFDTKHNGILDFEEFARALSIFH 115 (178)
Q Consensus 45 ~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~------~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~ 115 (178)
..+.-|...|+.++. ..+.+++.||+.++.. ........++.+++..|.|+||.|+|.||..++..+.
T Consensus 5 ~ai~~lI~~FhkYaG---~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 5 HSMEKMMLTFHKFAG---EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHHHHcC---CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 456778889998874 3568999999998754 2233456688899999999999999999988776553
No 60
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.41 E-value=2.4e-06 Score=54.51 Aligned_cols=67 Identities=27% Similarity=0.392 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhcccCCCCCcccHHHHHHHHhc-CCC-C----CHHHHHHHHHHHhcCCCCcccHHHHHHHHH
Q 030405 46 EIEALYELFKKISSAVIDDGLINKEEFQLALFK-TNK-K----ESLFADRVFDLFDTKHNGILDFEEFARALS 112 (178)
Q Consensus 46 ~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~-~~~-~----~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~ 112 (178)
.+..+...|+.++...+.+|.|+..+|..++.. .+. . ....++.+|+.+|.+++|.|+|++|+.++.
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~ 78 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVI 78 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 345555666655533112456666666665532 110 1 133344455555555555555555544443
No 61
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.40 E-value=1.9e-06 Score=50.12 Aligned_cols=60 Identities=28% Similarity=0.409 Sum_probs=50.4
Q ss_pred HHHHHHhhcccCCCCCcccHHHHHHHHhcCC-CCCHHHHHHHHHHHhcCCCCcccHHHHHHHH
Q 030405 50 LYELFKKISSAVIDDGLINKEEFQLALFKTN-KKESLFADRVFDLFDTKHNGILDFEEFARAL 111 (178)
Q Consensus 50 l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~-~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~ 111 (178)
+...|..+|.+ ++|.|+..+|..++...+ ......+..+|..++.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~--~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKD--GDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCC--CCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 56778888988 999999999999987743 4445667899999999999999999998764
No 62
>PF14658 EF-hand_9: EF-hand domain
Probab=98.39 E-value=1.7e-06 Score=51.50 Aligned_cols=62 Identities=18% Similarity=0.288 Sum_probs=52.6
Q ss_pred HHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCC-CceeHHHHHHHHHH
Q 030405 89 RVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQ-GFIERQEVKQMVVA 150 (178)
Q Consensus 89 ~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~-G~I~~~e~~~~l~~ 150 (178)
..|..||.++.|.|...+++.++.........+++++.+.+.+|.++. |.|+.++|..+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 468889999999999999999888888756677888999999999988 99999999888754
No 63
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.36 E-value=6.9e-07 Score=45.48 Aligned_cols=27 Identities=22% Similarity=0.636 Sum_probs=24.0
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHH
Q 030405 123 KIEFSFQLYDLKQQGFIERQEVKQMVV 149 (178)
Q Consensus 123 ~~~~~F~~~D~d~~G~I~~~e~~~~l~ 149 (178)
+++.+|+.||.|++|+|+.+||..+|.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 468899999999999999999999997
No 64
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.31 E-value=4.4e-06 Score=53.27 Aligned_cols=66 Identities=23% Similarity=0.263 Sum_probs=52.8
Q ss_pred HHHHHHHhcC--CCCcccHHHHHHHHHhhCCCCCh----hHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHh
Q 030405 88 DRVFDLFDTK--HNGILDFEEFARALSIFHPNSPI----DDKIEFSFQLYDLKQQGFIERQEVKQMVVATLT 153 (178)
Q Consensus 88 ~~lf~~~d~~--~~g~i~~~ef~~~~~~~~~~~~~----~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~ 153 (178)
-..|..++.. .+|.|+..+|..++........+ ++.+..+|+.+|.+++|.|+++||..++..++.
T Consensus 11 ~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~ 82 (88)
T cd05030 11 INVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGV 82 (88)
T ss_pred HHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 4678888765 46899999999999743321222 688999999999999999999999999987643
No 65
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.26 E-value=1.7e-06 Score=41.67 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=21.2
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHH
Q 030405 124 IEFSFQLYDLKQQGFIERQEVKQMV 148 (178)
Q Consensus 124 ~~~~F~~~D~d~~G~I~~~e~~~~l 148 (178)
++.+|+.+|.|++|.|+.+||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4578999999999999999998764
No 66
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.18 E-value=3.4e-06 Score=42.17 Aligned_cols=27 Identities=33% Similarity=0.619 Sum_probs=22.6
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHh
Q 030405 87 ADRVFDLFDTKHNGILDFEEFARALSI 113 (178)
Q Consensus 87 ~~~lf~~~d~~~~g~i~~~ef~~~~~~ 113 (178)
++.+|+.+|.|++|.|+++||..++..
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 577889999999999999999888764
No 67
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.16 E-value=7.5e-06 Score=53.75 Aligned_cols=69 Identities=26% Similarity=0.465 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhh
Q 030405 42 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSIF 114 (178)
Q Consensus 42 ~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~ 114 (178)
++++|.......|..+++ .+|.|+-.+...++.+.++.. ..+..++...|.+++|.++++||+.++..+
T Consensus 4 ls~~e~~~y~~~F~~l~~---~~g~isg~~a~~~f~~S~L~~-~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 4 LSPEEKQKYDQIFQSLDP---QDGKISGDQAREFFMKSGLPR-DVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp -SCCHHHHHHHHHHCTSS---STTEEEHHHHHHHHHHTTSSH-HHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC---CCCeEeHHHHHHHHHHcCCCH-HHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 566778888888888775 478888888888777766554 456888888888888888888888777644
No 68
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.05 E-value=1.6e-05 Score=63.93 Aligned_cols=56 Identities=27% Similarity=0.418 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHH
Q 030405 83 ESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATL 152 (178)
Q Consensus 83 ~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~ 152 (178)
....+..+|+.+|.+++|.|+++||.. ...+|..+|.|++|.|+.+||..++..++
T Consensus 332 ~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~ 387 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAAL 387 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 345678899999999999999999942 46789999999999999999999998764
No 69
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.05 E-value=2.6e-05 Score=62.29 Aligned_cols=104 Identities=17% Similarity=0.369 Sum_probs=71.1
Q ss_pred HHHHHHHHHhhcccCCCCCcccHHHHHHHHhc-CCCC---CHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCCh--
Q 030405 47 IEALYELFKKISSAVIDDGLINKEEFQLALFK-TNKK---ESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPI-- 120 (178)
Q Consensus 47 i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~-~~~~---~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~-- 120 (178)
.+-+.--|..+|+. .+|.|+..+|..++.. .... .....+++-+.++..+.| |+++||...+..+..-.+.
T Consensus 317 ~Eil~lEF~~~~~~--~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~g-ISl~Ef~~Ff~Fl~~l~dfd~ 393 (489)
T KOG2643|consen 317 EEILELEFERFDKG--DSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGKG-ISLQEFKAFFRFLNNLNDFDI 393 (489)
T ss_pred HHHHHHHHHHhCcc--cccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCCC-cCHHHHHHHHHHHhhhhHHHH
Confidence 34566788889987 7799999999988644 2222 223456777777776444 9999998776533211100
Q ss_pred -------------hH-----------------HHHHHHHhhCCCCCCceeHHHHHHHHHHHHh
Q 030405 121 -------------DD-----------------KIEFSFQLYDLKQQGFIERQEVKQMVVATLT 153 (178)
Q Consensus 121 -------------~e-----------------~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~ 153 (178)
.. -+.-+|.+||.|+||.|+.+||..+|+.=++
T Consensus 394 Al~fy~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~Rmh 456 (489)
T KOG2643|consen 394 ALRFYHMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRRMH 456 (489)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHHhh
Confidence 01 1223689999999999999999999986443
No 70
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.02 E-value=0.00011 Score=50.06 Aligned_cols=132 Identities=12% Similarity=0.086 Sum_probs=91.3
Q ss_pred ccchhhhhhhcccCccccCCCCCCCcHHHHHhhcCCCHHH--HHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCC---C
Q 030405 7 GLKHFCVVVVNCCDADLYKQPRGLEDPEALARETVFSVSE--IEALYELFKKISSAVIDDGLINKEEFQLALFKTN---K 81 (178)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~---~ 81 (178)
-++.+|..+..+.++++.. .++....+..+.++.+ +.+....+..- .- +...+++++|..++++.. .
T Consensus 12 e~ke~F~lfD~~gD~ki~~-----~q~gdvlRalG~nPT~aeV~k~l~~~~~~-~~--~~~rl~FE~fLpm~q~vaknk~ 83 (152)
T KOG0030|consen 12 EFKEAFLLFDRTGDGKISG-----SQVGDVLRALGQNPTNAEVLKVLGQPKRR-EM--NVKRLDFEEFLPMYQQVAKNKD 83 (152)
T ss_pred HHHHHHHHHhccCcccccH-----HHHHHHHHHhcCCCcHHHHHHHHcCcccc-hh--hhhhhhHHHHHHHHHHHHhccc
Confidence 3567777888888888776 7777777776665544 33332222211 00 236799999988876621 1
Q ss_pred CC-HHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 030405 82 KE-SLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMV 148 (178)
Q Consensus 82 ~~-~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l 148 (178)
.. -...-+-++.||+.++|.|...|+++++..+.. .-.++++..+..-- .|.+|.|.+++|.+-+
T Consensus 84 q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGe-kl~eeEVe~Llag~-eD~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 84 QGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGE-KLTEEEVEELLAGQ-EDSNGCINYEAFVKHI 149 (152)
T ss_pred cCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHh-hccHHHHHHHHccc-cccCCcCcHHHHHHHH
Confidence 11 122345678899999999999999999999987 56777777776665 5788999999988765
No 71
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.98 E-value=0.00014 Score=59.17 Aligned_cols=104 Identities=18% Similarity=0.322 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhc--CCCCCHHHH-HHHHHHHhcCCCCcccHHHHHHHHHhhCCCCC
Q 030405 43 SVSEIEALYELFKKISSAVIDDGLINKEEFQLALFK--TNKKESLFA-DRVFDLFDTKHNGILDFEEFARALSIFHPNSP 119 (178)
Q Consensus 43 ~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~--~~~~~~~~~-~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 119 (178)
.+.+++.+.-.|...+.+ +..+++.++|...... .....++.. .-+=...|..+||-|+|+||...-..++ .
T Consensus 31 ~~~eLr~if~~~as~e~~--ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC---~ 105 (694)
T KOG0751|consen 31 DPKELRSIFLKYASIEKN--GESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLC---A 105 (694)
T ss_pred ChHHHHHHHHHHhHHhhc--cccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhcc---C
Confidence 455666666666667777 7778999999876433 222233333 3344455777899999999998766654 4
Q ss_pred hhHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 030405 120 IDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 151 (178)
Q Consensus 120 ~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~ 151 (178)
++.....+|+.||+.++|.++.+++.+++.++
T Consensus 106 pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 106 PDALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred chHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 67778899999999999999999999998765
No 72
>PLN02964 phosphatidylserine decarboxylase
Probab=97.97 E-value=7.2e-05 Score=63.59 Aligned_cols=97 Identities=11% Similarity=0.107 Sum_probs=72.1
Q ss_pred ccchhhhhhhcccCccccCCCCCCCcHHHHHhhcC---CCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCC-CC
Q 030405 7 GLKHFCVVVVNCCDADLYKQPRGLEDPEALARETV---FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTN-KK 82 (178)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~-~~ 82 (178)
.++.+|..+..+..+.+ +..+....+ .+..+...+...|..+|.+ ++|.|+..+|..++...+ ..
T Consensus 144 elkeaF~lfD~dgdG~i---------Lg~ilrslG~~~pte~e~~fi~~mf~~~D~D--gdG~IdfdEFl~lL~~lg~~~ 212 (644)
T PLN02964 144 SACESFDLLDPSSSNKV---------VGSIFVSCSIEDPVETERSFARRILAIVDYD--EDGQLSFSEFSDLIKAFGNLV 212 (644)
T ss_pred HHHHHHHHHCCCCCCcC---------HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCC--CCCeEcHHHHHHHHHHhccCC
Confidence 34555565555554442 555555544 3455556689999999999 999999999999886633 23
Q ss_pred CHHHHHHHHHHHhcCCCCcccHHHHHHHHHhh
Q 030405 83 ESLFADRVFDLFDTKHNGILDFEEFARALSIF 114 (178)
Q Consensus 83 ~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~ 114 (178)
....+..+|+.+|.+++|.|+++||..++...
T Consensus 213 seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 213 AANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred CHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 45668999999999999999999999988763
No 73
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.86 E-value=0.00018 Score=45.86 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=51.6
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHH----hhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHh
Q 030405 88 DRVFDLFDTKHNGILDFEEFARALS----IFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLT 153 (178)
Q Consensus 88 ~~lf~~~d~~~~g~i~~~ef~~~~~----~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~ 153 (178)
-.+|..+..+ .+.++..||..++. .+..+......+..+++..|.|+||.|+..||..++..++.
T Consensus 11 I~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ 79 (91)
T cd05024 11 MLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLI 79 (91)
T ss_pred HHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 3467777743 56899999999885 33343455678999999999999999999999999988743
No 74
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.86 E-value=6.7e-05 Score=55.87 Aligned_cols=120 Identities=13% Similarity=0.177 Sum_probs=82.1
Q ss_pred HHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCC----CCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCC---
Q 030405 47 IEALYELFKKISSAVIDDGLINKEEFQLALFKTN----KKESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSP--- 119 (178)
Q Consensus 47 i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~----~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~--- 119 (178)
.+.|..+|.+.|.+ .+++|+..++..++.... .......+.-|+..|.+++|.|+|+||..-+........
T Consensus 100 rrklmviFsKvDVN--tDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekev 177 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVN--TDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEV 177 (362)
T ss_pred HHHHHHHHhhcccC--ccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHH
Confidence 46788999999998 899999999998874411 011122356799999999999999999765543322100
Q ss_pred -----------hhHHHHHHHHhhCCCCCCceeH---------HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhcc
Q 030405 120 -----------IDDKIEFSFQLYDLKQQGFIER---------QEVKQMVVATLTESGMNLSDDVIESIIDKVLSLIQ 176 (178)
Q Consensus 120 -----------~~e~~~~~F~~~D~d~~G~I~~---------~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~D 176 (178)
.+++ .+.|..-+++..|..+. +||..+| .++.|..-+..++++++...|
T Consensus 178 adairlneelkVDeE-tqevlenlkdRwyqaDsppadlllteeEflsFL-------HPEhSrgmLrfmVkeivrdlD 246 (362)
T KOG4251|consen 178 ADAIRLNEELKVDEE-TQEVLENLKDRWYQADSPPADLLLTEEEFLSFL-------HPEHSRGMLRFMVKEIVRDLD 246 (362)
T ss_pred HHHhhccCcccccHH-HHHHHHhhhhhhccccCchhhhhhhHHHHHHHc-------ChHhhhhhHHHHHHHHHHHhc
Confidence 0111 22344445566665555 8888876 567788888888988888766
No 75
>PF14658 EF-hand_9: EF-hand domain
Probab=97.84 E-value=9.8e-05 Score=44.02 Aligned_cols=59 Identities=14% Similarity=0.238 Sum_probs=51.1
Q ss_pred HHHhhcccCCCCCcccHHHHHHHHhcC-C-CCCHHHHHHHHHHHhcCCC-CcccHHHHHHHHHh
Q 030405 53 LFKKISSAVIDDGLINKEEFQLALFKT-N-KKESLFADRVFDLFDTKHN-GILDFEEFARALSI 113 (178)
Q Consensus 53 ~F~~~d~~~~~~g~i~~~ef~~~l~~~-~-~~~~~~~~~lf~~~d~~~~-g~i~~~ef~~~~~~ 113 (178)
+|+.+|++ +.|.|...++..+|... . .+.+..++.+.+.+|+++. |.|+++.|..++..
T Consensus 3 ~F~~fD~~--~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQ--KTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCc--CCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 68889998 99999999999999873 2 4556778999999999988 99999999998864
No 76
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.75 E-value=0.00019 Score=40.39 Aligned_cols=49 Identities=22% Similarity=0.296 Sum_probs=31.8
Q ss_pred ccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 030405 102 LDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 151 (178)
Q Consensus 102 i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~ 151 (178)
++|.|...++..+-- .-.++.+..+|+..|++++|.+..+||..+.+.+
T Consensus 2 msf~Evk~lLk~~NI-~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNI-EMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcc-CcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 567777776665443 3455667778888888888888888888776654
No 77
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.64 E-value=0.00012 Score=59.46 Aligned_cols=93 Identities=19% Similarity=0.270 Sum_probs=54.4
Q ss_pred HHHHhhcccCCCCCcccHHHHHHHHhcCCCCC----HHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHH
Q 030405 52 ELFKKISSAVIDDGLINKEEFQLALFKTNKKE----SLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFS 127 (178)
Q Consensus 52 ~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~----~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~ 127 (178)
.+|+.+|+. ++|.++.+++..++.+..+.. +...+.+-..|..+....++|.+|-.++..+. .|...++
T Consensus 112 ~aFqlFDr~--~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~-----~E~~~qa 184 (694)
T KOG0751|consen 112 VAFQLFDRL--GNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQ-----LEHAEQA 184 (694)
T ss_pred HHHHHhccc--CCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHH-----HHHHHHH
Confidence 455555555 555566666655554411110 00011111122223334455666555555442 3557889
Q ss_pred HHhhCCCCCCceeHHHHHHHHHHH
Q 030405 128 FQLYDLKQQGFIERQEVKQMVVAT 151 (178)
Q Consensus 128 F~~~D~d~~G~I~~~e~~~~l~~~ 151 (178)
|+..|+.++|.|+.-++.+++.++
T Consensus 185 fr~~d~~~ng~is~Ldfq~imvt~ 208 (694)
T KOG0751|consen 185 FREKDKAKNGFISVLDFQDIMVTI 208 (694)
T ss_pred HHHhcccCCCeeeeechHhhhhhh
Confidence 999999999999999999999876
No 78
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=97.59 E-value=0.00018 Score=60.24 Aligned_cols=112 Identities=24% Similarity=0.415 Sum_probs=84.0
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHhh-cccCCCCC--cc---------cHHHHHHHHhc--CCCCCHHHHHHHHHHHhc
Q 030405 31 EDPEALARETVFSVSEIEALYELFKKI-SSAVIDDG--LI---------NKEEFQLALFK--TNKKESLFADRVFDLFDT 96 (178)
Q Consensus 31 ~~~~~~~~~~~~~~~~i~~l~~~F~~~-d~~~~~~g--~i---------~~~ef~~~l~~--~~~~~~~~~~~lf~~~d~ 96 (178)
..++.+.+...|+..++..++++|... -.++.+-| .. +...|..++.. .......++.++|+.+|.
T Consensus 487 t~lrs~~~~~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~ 566 (671)
T KOG4347|consen 487 TILRSVVQTTSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLDD 566 (671)
T ss_pred HHHHhhcccCccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhccc
Confidence 788889999999999999999999753 11211111 22 22233332222 122334568899999999
Q ss_pred CCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHH
Q 030405 97 KHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEV 144 (178)
Q Consensus 97 ~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~ 144 (178)
+.+|.++|.+++.++..+.. +..-+++..+|+++|.+++ ..+.+|.
T Consensus 567 s~~g~Ltf~~lv~gL~~l~~-~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 567 SMTGLLTFKDLVSGLSILKA-GDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred CCcceeEHHHHHHHHHHHHh-hhHHHHHHHHHhhccCCcc-ccccccc
Confidence 99999999999999999887 6777899999999999999 8888887
No 79
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.49 E-value=0.00052 Score=56.26 Aligned_cols=75 Identities=19% Similarity=0.281 Sum_probs=63.1
Q ss_pred hcCCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCCC----HHHHHHHHHHHhcCCCCcccHHHHHHHHHhh
Q 030405 39 ETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKE----SLFADRVFDLFDTKHNGILDFEEFARALSIF 114 (178)
Q Consensus 39 ~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~----~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~ 114 (178)
+..||..|+..+.+.|...| + ++|+++..++..++.+..... ...++.+....+.+.+|.|+|++|+..+-.+
T Consensus 10 ~~~~tq~El~~l~~kF~~~d-~--~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 10 QSQLTQEELRELKEKFNKLD-D--QKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred cccccHHHHHHHHHHHHhhc-C--CCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 34589999999999999999 6 899999999999887743333 6678899999999999999999999977655
Q ss_pred CC
Q 030405 115 HP 116 (178)
Q Consensus 115 ~~ 116 (178)
..
T Consensus 87 ~s 88 (627)
T KOG0046|consen 87 KS 88 (627)
T ss_pred hh
Confidence 43
No 80
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.48 E-value=0.0012 Score=53.02 Aligned_cols=96 Identities=21% Similarity=0.336 Sum_probs=70.9
Q ss_pred HHHHHHHhhcccCCCCCcccHHHHHHHH---hcC---CC----------CCHHHHH--HHHHHHhcCCCCcccHHHHHHH
Q 030405 49 ALYELFKKISSAVIDDGLINKEEFQLAL---FKT---NK----------KESLFAD--RVFDLFDTKHNGILDFEEFARA 110 (178)
Q Consensus 49 ~l~~~F~~~d~~~~~~g~i~~~ef~~~l---~~~---~~----------~~~~~~~--~lf~~~d~~~~g~i~~~ef~~~ 110 (178)
...-+|..+|.| ++|.|+.+||.... ... +. .....+. -+--.|..++++++++++|...
T Consensus 234 ~F~IAFKMFD~d--gnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F 311 (489)
T KOG2643|consen 234 NFRIAFKMFDLD--GNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKF 311 (489)
T ss_pred cceeeeeeeecC--CCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHH
Confidence 355578889999 99999999998764 110 00 0011111 2334467889999999999999
Q ss_pred HHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 030405 111 LSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 151 (178)
Q Consensus 111 ~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~ 151 (178)
+..++. |-+.--|..+|+..+|.|+..+|-.+|-..
T Consensus 312 ~e~Lq~-----Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~ 347 (489)
T KOG2643|consen 312 QENLQE-----EILELEFERFDKGDSGAISEVDFAELLLAY 347 (489)
T ss_pred HHHHHH-----HHHHHHHHHhCcccccccCHHHHHHHHHHH
Confidence 987753 667778999999999999999999998654
No 81
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.45 E-value=0.00037 Score=53.95 Aligned_cols=86 Identities=19% Similarity=0.260 Sum_probs=65.8
Q ss_pred CCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHH
Q 030405 63 DDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQ 142 (178)
Q Consensus 63 ~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~ 142 (178)
+.+.|--.+|..-+ ..+.......+|.+||.+++|.++|.+....+..+.......+-++-+|+.|+.+.||.+...
T Consensus 240 kg~~igi~efa~~l---~vpvsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~ 316 (412)
T KOG4666|consen 240 KGPDIGIVEFAVNL---RVPVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEH 316 (412)
T ss_pred cCCCcceeEeeeee---ecchhhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchH
Confidence 34455555665433 222234457889999999999999999988888877656667788999999999999999999
Q ss_pred HHHHHHHHH
Q 030405 143 EVKQMVVAT 151 (178)
Q Consensus 143 e~~~~l~~~ 151 (178)
+|..+|+..
T Consensus 317 ~ls~ilq~~ 325 (412)
T KOG4666|consen 317 ILSLILQVV 325 (412)
T ss_pred HHHHHHHHh
Confidence 999888875
No 82
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.44 E-value=0.00024 Score=34.05 Aligned_cols=23 Identities=43% Similarity=0.788 Sum_probs=16.0
Q ss_pred HHHHHHHhcCCCCcccHHHHHHH
Q 030405 88 DRVFDLFDTKHNGILDFEEFARA 110 (178)
Q Consensus 88 ~~lf~~~d~~~~g~i~~~ef~~~ 110 (178)
+.+|+.+|.|++|.|+++||..+
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45677777777777777777653
No 83
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.41 E-value=0.0014 Score=43.02 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 030405 85 LFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 151 (178)
Q Consensus 85 ~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~ 151 (178)
.....+|+..+. ++|.|+-++...++..- +.+.+.+..+|.+.|.|++|+++.+||.-+|.-+
T Consensus 10 ~~y~~~F~~l~~-~~g~isg~~a~~~f~~S---~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 10 QKYDQIFQSLDP-QDGKISGDQAREFFMKS---GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHHCTSS-STTEEEHHHHHHHHHHT---TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCeEeHHHHHHHHHHc---CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 345788888875 57999999998877654 5678899999999999999999999999888755
No 84
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.40 E-value=0.00057 Score=55.08 Aligned_cols=66 Identities=21% Similarity=0.362 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHhhCCC---CChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 030405 86 FADRVFDLFDTKHNGILDFEEFARALSIFHPN---SPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 151 (178)
Q Consensus 86 ~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~---~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~ 151 (178)
.++.+|+..|.+++|.|+.+||...|..+... .-.+..+-.+=+..|.|+||.|+..||-.++.-.
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 36789999999999999999999988765532 2345678888899999999999999998877543
No 85
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.39 E-value=0.00094 Score=37.61 Aligned_cols=49 Identities=22% Similarity=0.291 Sum_probs=38.5
Q ss_pred cccHHHHHHHHhcCCCC-CHHHHHHHHHHHhcCCCCcccHHHHHHHHHhh
Q 030405 66 LINKEEFQLALFKTNKK-ESLFADRVFDLFDTKHNGILDFEEFARALSIF 114 (178)
Q Consensus 66 ~i~~~ef~~~l~~~~~~-~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~ 114 (178)
+|+..|+..+|...+.. .+..+..+|+.+|.+++|.+..+||..++..+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 47788999988775544 45678999999999999999999999988765
No 86
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.34 E-value=0.00071 Score=54.61 Aligned_cols=53 Identities=34% Similarity=0.523 Sum_probs=45.9
Q ss_pred HHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhh
Q 030405 48 EALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSIF 114 (178)
Q Consensus 48 ~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~ 114 (178)
..+...|..+|.+ ++|.|+..||.. ++.+|..+|.|++|.|+++||..++...
T Consensus 334 ~~l~~aF~~~D~d--gdG~Is~~E~~~------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 334 HAAQEIFRLYDLD--GDGFITREEWLG------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred HHHHHHHHHhCCC--CCCcCcHHHHHH------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 4567789999999 999999999942 4789999999999999999999988653
No 87
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.32 E-value=0.00051 Score=34.62 Aligned_cols=25 Identities=36% Similarity=0.756 Sum_probs=15.7
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHH
Q 030405 88 DRVFDLFDTKHNGILDFEEFARALS 112 (178)
Q Consensus 88 ~~lf~~~d~~~~g~i~~~ef~~~~~ 112 (178)
+.+|+.+|.+++|.|+++||..++.
T Consensus 3 ~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 3 REAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 4566666666666666666666654
No 88
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.26 E-value=0.0016 Score=43.38 Aligned_cols=64 Identities=19% Similarity=0.198 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHH
Q 030405 80 NKKESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQ 146 (178)
Q Consensus 80 ~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~ 146 (178)
.......+...|..+|.|++|.++..|+..+...+. ..+.-++..|+..|.|+||.|+..|+..
T Consensus 49 ~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~---~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 49 YSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLM---PPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTS---TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHh---hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 334455678889999999999999999887765442 3456688999999999999999999864
No 89
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.25 E-value=0.0019 Score=46.86 Aligned_cols=65 Identities=15% Similarity=0.238 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 030405 86 FADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 151 (178)
Q Consensus 86 ~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~ 151 (178)
.+..+|+.+|.+.||.|++.|+..++..+.. ..+.--+..+.+..|.|.+|.|+.-||--+....
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLga-pQTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLGA-PQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhCC-chhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 4678999999999999999999999999876 4556668889999999999999999998888765
No 90
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.23 E-value=0.00043 Score=33.22 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=21.4
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHH
Q 030405 124 IEFSFQLYDLKQQGFIERQEVKQMVVA 150 (178)
Q Consensus 124 ~~~~F~~~D~d~~G~I~~~e~~~~l~~ 150 (178)
++.+|+.+|.+++|.|+..||..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 467888888888888888888887753
No 91
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.14 E-value=0.0031 Score=57.64 Aligned_cols=83 Identities=23% Similarity=0.381 Sum_probs=65.5
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHhhCCC------CChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCC
Q 030405 87 ADRVFDLFDTKHNGILDFEEFARALSIFHPN------SPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLS 160 (178)
Q Consensus 87 ~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~------~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~ 160 (178)
...+|+.||.+.+|.+++++|..++..+... +.++.++..+..+.|++.+|+|+..|+..+|-. +.+.+-++
T Consensus 2255 Fs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~--~ETeNI~s 2332 (2399)
T KOG0040|consen 2255 FSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS--KETENILS 2332 (2399)
T ss_pred HHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh--cccccccc
Confidence 4678999999999999999999999876532 344558999999999999999999999999854 23334566
Q ss_pred HHHHHHHHHHH
Q 030405 161 DDVIESIIDKV 171 (178)
Q Consensus 161 ~~~~~~~~~~~ 171 (178)
.++|+..++.+
T Consensus 2333 ~~eIE~AfraL 2343 (2399)
T KOG0040|consen 2333 SEEIEDAFRAL 2343 (2399)
T ss_pred hHHHHHHHHHh
Confidence 77777665544
No 92
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=96.97 E-value=0.0035 Score=48.75 Aligned_cols=99 Identities=13% Similarity=0.104 Sum_probs=79.4
Q ss_pred HHHHHHHHhhcccCCCCCcccHHHHHHHHhc--CCCCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHH
Q 030405 48 EALYELFKKISSAVIDDGLINKEEFQLALFK--TNKKESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIE 125 (178)
Q Consensus 48 ~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~--~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~ 125 (178)
..+...|..+|.+ ++|.++..+....+.- ........++-.|+.|+...||.+.-.+|..++..... ...-.+-
T Consensus 259 d~l~~~f~LFde~--~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg--v~~l~v~ 334 (412)
T KOG4666|consen 259 DKLAPTFMLFDEG--TTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG--VEVLRVP 334 (412)
T ss_pred hhhhhhhheecCC--CCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC--cceeecc
Confidence 5677889999988 8999998887766543 33444556788999999999999999999988876653 3334466
Q ss_pred HHHHhhCCCCCCceeHHHHHHHHHH
Q 030405 126 FSFQLYDLKQQGFIERQEVKQMVVA 150 (178)
Q Consensus 126 ~~F~~~D~d~~G~I~~~e~~~~l~~ 150 (178)
-+|+..+...+|+|+.++|+.+...
T Consensus 335 ~lf~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 335 VLFPSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred ccchhhhcccCcceeHHHHHHHHHh
Confidence 7899999999999999999999754
No 93
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.80 E-value=0.0017 Score=48.52 Aligned_cols=121 Identities=15% Similarity=0.144 Sum_probs=72.1
Q ss_pred HHHHhhcccCCCCCcccHHHHHHHHhc-CCCCCHH--------------HHHHHHHHHhcCCCCc---------ccHHHH
Q 030405 52 ELFKKISSAVIDDGLINKEEFQLALFK-TNKKESL--------------FADRVFDLFDTKHNGI---------LDFEEF 107 (178)
Q Consensus 52 ~~F~~~d~~~~~~g~i~~~ef~~~l~~-~~~~~~~--------------~~~~lf~~~d~~~~g~---------i~~~ef 107 (178)
..|...|++ ++|.|+..+|+--+.+ .+..... .-.+.|..-+.+..+. ++-+||
T Consensus 144 thFraVDpd--gDGhvsWdEykvkFlaskghsekevadairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEf 221 (362)
T KOG4251|consen 144 THFRAVDPD--GDGHVSWDEYKVKFLASKGHSEKEVADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEF 221 (362)
T ss_pred hheeeeCCC--CCCceehhhhhhHHHhhcCcchHHHHHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHH
Confidence 467777888 9999999998764433 1111111 0123344444444444 444888
Q ss_pred HHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHhh
Q 030405 108 ARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTE-SGMNLSDDVIESIIDKVLSL 174 (178)
Q Consensus 108 ~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~-~~~~l~~~~~~~~~~~~~~~ 174 (178)
..++..-...+-...-+..+.+.+|.||+..++..||.......... .|..+..-.++.-.+++=+.
T Consensus 222 lsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeEl 289 (362)
T KOG4251|consen 222 LSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEEL 289 (362)
T ss_pred HHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHH
Confidence 88876554434445567778899999999999999998876433221 13344444444444444333
No 94
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.80 E-value=0.00076 Score=44.99 Aligned_cols=63 Identities=14% Similarity=0.229 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCcccHHHHHH
Q 030405 44 VSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFAR 109 (178)
Q Consensus 44 ~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~ 109 (178)
......+.=.|..+|.+ ++|.++..|+..+.... .+.+.=+...|+.+|.|++|.|++.||..
T Consensus 50 ~~~~~~~~W~F~~LD~n--~d~~L~~~El~~l~~~l-~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRN--KDGVLDRSELKPLRRPL-MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGGHHHHHHHHHHH--T---SSEE-TTTTGGGGSTT-STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhhHhhhcCC--CCCccCHHHHHHHHHHH-hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 34455677789999999 99999999998765433 23333357899999999999999999875
No 95
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=96.69 E-value=0.05 Score=46.92 Aligned_cols=118 Identities=18% Similarity=0.255 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCC-CHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHH
Q 030405 45 SEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKK-ESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDK 123 (178)
Q Consensus 45 ~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~ 123 (178)
..-.-+...|+..|.+ .+|.++..+...++...... ....+..+|+..+..+++.+.+.+|......... .. +
T Consensus 133 ~~~~wi~~~~~~ad~~--~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~---rp-e 206 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKN--KNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTK---RP-E 206 (746)
T ss_pred hHHHHHHHHHHHHccc--cccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhcc---Cc-h
Confidence 3345677899999999 99999999988887663333 3455788899998888999999999998877754 22 7
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 030405 124 IEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKV 171 (178)
Q Consensus 124 ~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 171 (178)
+..+|..+- ++.++++.+++..+|... +. ..+.+...++++++..
T Consensus 207 v~~~f~~~s-~~~~~ls~~~L~~Fl~~~-q~-e~~~~~~~ae~ii~~~ 251 (746)
T KOG0169|consen 207 VYFLFVQYS-HGKEYLSTDDLLRFLEEE-QG-EDGATLDEAEEIIERY 251 (746)
T ss_pred HHHHHHHHh-CCCCccCHHHHHHHHHHh-cc-cccccHHHHHHHHHHh
Confidence 888999884 449999999999999876 11 2357777777777553
No 96
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.38 E-value=0.025 Score=44.41 Aligned_cols=104 Identities=16% Similarity=0.082 Sum_probs=74.5
Q ss_pred cCCCHHHH----HHHHHHHHhhcccCCCCCcccHHHHHHH---Hhc-CCCCCHHHHHHHHHHHhcCCCCcccHHHHHHHH
Q 030405 40 TVFSVSEI----EALYELFKKISSAVIDDGLINKEEFQLA---LFK-TNKKESLFADRVFDLFDTKHNGILDFEEFARAL 111 (178)
Q Consensus 40 ~~~~~~~i----~~l~~~F~~~d~~~~~~g~i~~~ef~~~---l~~-~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~ 111 (178)
.+.+..++ .+|++.|..+-.+ +++......+... +.. ..+.-...+..+|+.+|.|.++.++-.|+..+-
T Consensus 199 ~~Ct~qeL~~lg~RL~dWF~~lhe~--s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ 276 (434)
T KOG3555|consen 199 YACTDQELRRLGNRLRDWFKALHED--SSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIE 276 (434)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhh--hhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhh
Confidence 45788777 4567778766444 4444444444332 111 233345567899999999999999999987754
Q ss_pred HhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 030405 112 SIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVA 150 (178)
Q Consensus 112 ~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~ 150 (178)
. ...+.-++..|...|...||.|+-.|+...+..
T Consensus 277 l-----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 277 L-----DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred c-----cCchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 2 345677999999999999999999999988754
No 97
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.14 E-value=0.011 Score=27.98 Aligned_cols=25 Identities=44% Similarity=0.802 Sum_probs=17.8
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHH
Q 030405 88 DRVFDLFDTKHNGILDFEEFARALS 112 (178)
Q Consensus 88 ~~lf~~~d~~~~g~i~~~ef~~~~~ 112 (178)
+.+|+.+|.+++|.|++.+|..++.
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 5677777777777777777776654
No 98
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.032 Score=36.95 Aligned_cols=66 Identities=17% Similarity=0.304 Sum_probs=34.1
Q ss_pred cCCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhc-----------CCCCCHHHHHHH----HHHHhcCCCCcccH
Q 030405 40 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFK-----------TNKKESLFADRV----FDLFDTKHNGILDF 104 (178)
Q Consensus 40 ~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~-----------~~~~~~~~~~~l----f~~~d~~~~g~i~~ 104 (178)
.++++++++..+ |...|-+ +++.++--++.+++.. .+..++..+.++ .+.-|.|++|.|+|
T Consensus 61 a~mtpeqlqfHY--F~MHDld--knn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDY 136 (144)
T KOG4065|consen 61 AKMTPEQLQFHY--FSMHDLD--KNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDY 136 (144)
T ss_pred hhCCHHHHhhhh--hhhhccC--cCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeH
Confidence 455666655443 4444444 6677777777776632 112223333333 33335556666666
Q ss_pred HHHHH
Q 030405 105 EEFAR 109 (178)
Q Consensus 105 ~ef~~ 109 (178)
.||+.
T Consensus 137 gEflK 141 (144)
T KOG4065|consen 137 GEFLK 141 (144)
T ss_pred HHHHh
Confidence 66654
No 99
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=95.77 E-value=0.05 Score=44.39 Aligned_cols=84 Identities=17% Similarity=0.227 Sum_probs=62.9
Q ss_pred CCCcccHHHHHHHHhcC-CCCCHHHHHHHHHHHhcCCCCcccHHHHHHHHH----hhCCC----CChhHHHHHHHHhhCC
Q 030405 63 DDGLINKEEFQLALFKT-NKKESLFADRVFDLFDTKHNGILDFEEFARALS----IFHPN----SPIDDKIEFSFQLYDL 133 (178)
Q Consensus 63 ~~g~i~~~ef~~~l~~~-~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~----~~~~~----~~~~e~~~~~F~~~D~ 133 (178)
.+|+|+..+|..++... ....+.-++-+|+.+|.+++|.++..+...+.. ++... ...+.-+-++|.+.-.
T Consensus 328 ~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP 407 (493)
T KOG2562|consen 328 VEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKP 407 (493)
T ss_pred ecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCc
Confidence 67999999999987663 333445578999999999999999999765443 22211 1233456778888887
Q ss_pred CCCCceeHHHHHH
Q 030405 134 KQQGFIERQEVKQ 146 (178)
Q Consensus 134 d~~G~I~~~e~~~ 146 (178)
...|+|+..||+.
T Consensus 408 ~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 408 EDENKITLQDLKG 420 (493)
T ss_pred cCCCceeHHHHhh
Confidence 8899999999987
No 100
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.75 E-value=0.037 Score=34.50 Aligned_cols=62 Identities=15% Similarity=0.284 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHhhCCC-CChhHHHHHHHHhhCCC----CCCceeHHHHHHHHH
Q 030405 87 ADRVFDLFDTKHNGILDFEEFARALSIFHPN-SPIDDKIEFSFQLYDLK----QQGFIERQEVKQMVV 149 (178)
Q Consensus 87 ~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~-~~~~e~~~~~F~~~D~d----~~G~I~~~e~~~~l~ 149 (178)
+..+|..+.. +.+.|+.++|...+...++. ....+.+..+++.|..+ ..+.++.++|..+|.
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 4677888865 56778888888888776653 23466777777777543 468889999888883
No 101
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.43 E-value=0.011 Score=45.97 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 030405 87 ADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVA 150 (178)
Q Consensus 87 ~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~ 150 (178)
+...|+.+|.|+++.|...|+.-+-..+.....+..-.+.+|+..|.|+|-.|+..|++..|..
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 4557999999999988888766554444443456677899999999999999999999999865
No 102
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=95.37 E-value=0.12 Score=45.58 Aligned_cols=103 Identities=16% Similarity=0.154 Sum_probs=76.9
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCCCH---HHHHHHHHHH---hcCCCCcccHHHHHHHHHhh
Q 030405 41 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKES---LFADRVFDLF---DTKHNGILDFEEFARALSIF 114 (178)
Q Consensus 41 ~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~---~~~~~lf~~~---d~~~~g~i~~~ef~~~~~~~ 114 (178)
..++..+..+...|..+++. ..|.++.++|..++...+.... .....+|... |.+..|.+++.+|...+.+-
T Consensus 740 ~~sQ~v~~ElrAle~~~~~~--d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 740 GTSQYVLDELRALENEQDKI--DGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred chhHHHHHHHHHHHhHHHHh--hcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 45566778888888888877 7788999999999877554432 2244555554 55556889999999999876
Q ss_pred CCCCChhHHHHHHHHhhCCCCCCceeHHHHHH
Q 030405 115 HPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQ 146 (178)
Q Consensus 115 ~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~ 146 (178)
....+....+..+|+.+-+++. +|..+|+..
T Consensus 818 ~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 818 YEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 6655667778889999866544 899999887
No 103
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=95.32 E-value=0.32 Score=33.09 Aligned_cols=101 Identities=11% Similarity=0.266 Sum_probs=54.4
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCcccHHHH-HH
Q 030405 31 EDPEALARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEF-AR 109 (178)
Q Consensus 31 ~~~~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~ef-~~ 109 (178)
..++.+++...+..-.+..+.+.|....-+...+..++..++..++ ..+|........+..+.... +.
T Consensus 24 ~KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L-----------~~iy~~l~~~~p~~~~i~~~~v~ 92 (127)
T PF09068_consen 24 MKLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLL-----------SSIYEFLNKRLPTLHQIPSRPVD 92 (127)
T ss_dssp HHHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHH-----------HHHHHHHHHHSTTS--HH-----
T ss_pred HHHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHH-----------HHHHHHHHHHCCCCCCCCchhHH
Confidence 4566677777777777777888887765441123457777777766 34553333322222221100 00
Q ss_pred HHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 030405 110 ALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVA 150 (178)
Q Consensus 110 ~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~ 150 (178)
. ..+-.+.+++..||.+++|.|+.-.++-.|..
T Consensus 93 ~--------a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 93 L--------AVDLLLNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp H--------HHHHHHHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred H--------HHHHHHHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 0 11123678999999999999999998887754
No 104
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=94.54 E-value=0.13 Score=33.19 Aligned_cols=65 Identities=17% Similarity=0.317 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHhcC---CCCcccHHHHHHHHHhhCC
Q 030405 46 EIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTK---HNGILDFEEFARALSIFHP 116 (178)
Q Consensus 46 ~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~---~~g~i~~~ef~~~~~~~~~ 116 (178)
....+...|+.+. .+|+++.+.|..|+... .+++++.+||+.+... ..+.|+.+|+..+|..+..
T Consensus 28 ~W~~VE~RFd~La----~dG~L~rs~Fg~CIGM~--dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qisD 95 (100)
T PF08414_consen 28 GWKEVEKRFDKLA----KDGLLPRSDFGECIGMK--DSKEFAGELFDALARRRGIKGDSITKDELKEFWEQISD 95 (100)
T ss_dssp -HHHHHHHHHHH-----BTTBEEGGGHHHHHT----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHhC----cCCcccHHHHHHhcCCc--ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhhc
Confidence 4677888999987 46999999999998432 3578899999998652 2367999999999877654
No 105
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.49 E-value=0.13 Score=42.48 Aligned_cols=72 Identities=17% Similarity=0.265 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhC
Q 030405 41 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSIFH 115 (178)
Q Consensus 41 ~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~ 115 (178)
.++.++.++..+.|.-+-++ .+|.|+-..-++++.+..+.- .++..||.+.|.+.||.+++.||...+..+.
T Consensus 224 ~IT~EQReYYvnQFrtvQpD--p~gfisGsaAknFFtKSklpi-~ELshIWeLsD~d~DGALtL~EFcAAfHLVV 295 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPD--PHGFISGSAAKNFFTKSKLPI-EELSHIWELSDVDRDGALTLSEFCAAFHLVV 295 (737)
T ss_pred ccCHHHHHHHHhhhhcccCC--cccccccHHHHhhhhhccCch-HHHHHHHhhcccCccccccHHHHHhhHhhee
Confidence 46778888888888888777 788888887777776644333 3357788888888888888888888776543
No 106
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.20 E-value=1 Score=32.16 Aligned_cols=62 Identities=13% Similarity=0.186 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCCh------hHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 030405 87 ADRVFDLFDTKHNGILDFEEFARALSIFHPNSPI------DDKIEFSFQLYDLKQQGFIERQEVKQMVV 149 (178)
Q Consensus 87 ~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~------~e~~~~~F~~~D~d~~G~I~~~e~~~~l~ 149 (178)
.+.+|..++..+.+.+++.|+..++..-....++ .-++..+|.+. .+.+|.+.+++++.+..
T Consensus 98 Fe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vYD 165 (174)
T PF05042_consen 98 FEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVYD 165 (174)
T ss_pred HHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhcc
Confidence 6889999998888889999998888753322221 13455566665 67799999999998754
No 107
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=93.10 E-value=0.47 Score=29.42 Aligned_cols=62 Identities=29% Similarity=0.405 Sum_probs=45.1
Q ss_pred HHHHHHhhcccCCCCCcccHHHHHHHHhc-CCC--CCHHHHHHHHHHHhcC----CCCcccHHHHHHHHHhh
Q 030405 50 LYELFKKISSAVIDDGLINKEEFQLALFK-TNK--KESLFADRVFDLFDTK----HNGILDFEEFARALSIF 114 (178)
Q Consensus 50 l~~~F~~~d~~~~~~g~i~~~ef~~~l~~-~~~--~~~~~~~~lf~~~d~~----~~g~i~~~ef~~~~~~~ 114 (178)
+...|..+.. +.+.|+.++|..+|.. .+. .....+..++..+..+ ..+.++++.|...+..-
T Consensus 2 i~~if~~ys~---~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 2 IEEIFRKYSS---DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHCT---TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred HHHHHHHHhC---CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 5566776643 3678999999999955 222 2456688888888654 46889999999988543
No 108
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.86 E-value=0.12 Score=42.64 Aligned_cols=71 Identities=11% Similarity=0.173 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHH-HhhcCCCCCH
Q 030405 88 DRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT-LTESGMNLSD 161 (178)
Q Consensus 88 ~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~-~~~~~~~l~~ 161 (178)
-.-|+.+..|-.|.|+=.--..++. +.+.+.+++..+|++.|.|+||-++..||+..+.-+ .+..|++|.+
T Consensus 234 vnQFrtvQpDp~gfisGsaAknFFt---KSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaRkNgypLPe 305 (737)
T KOG1955|consen 234 VNQFRTVQPDPHGFISGSAAKNFFT---KSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVARKNGYPLPE 305 (737)
T ss_pred HhhhhcccCCcccccccHHHHhhhh---hccCchHHHHHHHhhcccCccccccHHHHHhhHhheeecccCCCCCC
Confidence 4457778888888877665555553 335677899999999999999999999999998754 5566665554
No 109
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.80 E-value=0.2 Score=43.56 Aligned_cols=63 Identities=19% Similarity=0.307 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCcccHHHHHHHHH
Q 030405 47 IEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALS 112 (178)
Q Consensus 47 i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~ 112 (178)
.......|+.+|+. .+|+++-..-+.+|...+++... +..|+.+-|.|+||.++-+||+..+.
T Consensus 194 klKY~QlFNa~Dkt--rsG~Lsg~qaR~aL~qS~Lpq~~-LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 194 KLKYRQLFNALDKT--RSGYLSGQQARSALGQSGLPQNQ-LAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hhHHHHHhhhcccc--cccccccHHHHHHHHhcCCchhh-HhhheeeeccCCCCcccHHHHHHHHH
Confidence 34566778888877 78888888887777665555433 46677777888888888888876654
No 110
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.18 E-value=0.69 Score=40.46 Aligned_cols=67 Identities=16% Similarity=0.307 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCcccHHHHHHHHH
Q 030405 42 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALS 112 (178)
Q Consensus 42 ~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~ 112 (178)
++..+.......|..+-+ +.|+|+-.+-++++...+++. ..+..|+.+.|.|+||.++..||...|.
T Consensus 10 vT~~Er~K~~~qF~~Lkp---~~gfitg~qArnfflqS~LP~-~VLaqIWALsDldkDGrmdi~EfSIAmk 76 (1118)
T KOG1029|consen 10 VTDEERQKHDAQFGQLKP---GQGFITGDQARNFFLQSGLPT-PVLAQIWALSDLDKDGRMDIREFSIAMK 76 (1118)
T ss_pred cchHHHHHHHHHHhccCC---CCCccchHhhhhhHHhcCCCh-HHHHHHHHhhhcCccccchHHHHHHHHH
Confidence 677787788888888765 689999999999987766654 4468899999999999999999987765
No 111
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=91.56 E-value=1.4 Score=30.92 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=40.7
Q ss_pred HHHHHHhhcccCCCCCcccHHHHHHHHhcCCC----CCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhh
Q 030405 50 LYELFKKISSAVIDDGLINKEEFQLALFKTNK----KESLFADRVFDLFDTKHNGILDFEEFARALSIF 114 (178)
Q Consensus 50 l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~----~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~ 114 (178)
+...|..+-.. +...|+...|..++...+. .....++-+|..+-..+...|+|++|..++..+
T Consensus 4 ~F~~f~~fG~~--~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 4 VFKAFASFGKK--NGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHCSSTS--TSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHHHhcCC--ccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 34444444333 4557999999998855221 223457889999876666779999999888654
No 112
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=91.42 E-value=1 Score=37.65 Aligned_cols=64 Identities=14% Similarity=0.187 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHhhCCC--CChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 030405 87 ADRVFDLFDTKHNGILDFEEFARALSIFHPN--SPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 151 (178)
Q Consensus 87 ~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~--~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~ 151 (178)
+..-|...| +++|.|+..+....+...... ...+++++.+....+.|.+|.|+.+||..++-.+
T Consensus 21 l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 21 LKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 456788888 889999999999988765431 1236789999999999999999999999976544
No 113
>PLN02952 phosphoinositide phospholipase C
Probab=91.33 E-value=2.1 Score=36.80 Aligned_cols=69 Identities=14% Similarity=0.295 Sum_probs=33.4
Q ss_pred CcccHHHHHHHHHhhCC-CCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 030405 100 GILDFEEFARALSIFHP-NSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKV 171 (178)
Q Consensus 100 g~i~~~ef~~~~~~~~~-~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 171 (178)
|.++|++|..+...+.. ...+..++..+|..|-. +.+.++.++|..+|...-+. ...+.+++..+++.+
T Consensus 15 g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e--~~~~~~~~~~i~~~~ 84 (599)
T PLN02952 15 GSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDE--LDCTLAEAQRIVEEV 84 (599)
T ss_pred CCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCC--cCCCHHHHHHHHHHH
Confidence 55666666555444431 11234556666666632 33456666666666543111 124444444444433
No 114
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=90.82 E-value=0.42 Score=28.83 Aligned_cols=29 Identities=7% Similarity=0.329 Sum_probs=25.6
Q ss_pred ChhHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 030405 119 PIDDKIEFSFQLYDLKQQGFIERQEVKQMV 148 (178)
Q Consensus 119 ~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l 148 (178)
.+.+.+..+|+.+ .++.++||.+||++.|
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l 31 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSL 31 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHc
Confidence 4567899999999 7889999999999886
No 115
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.72 E-value=0.66 Score=40.32 Aligned_cols=70 Identities=20% Similarity=0.478 Sum_probs=56.3
Q ss_pred CCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhcc
Q 030405 99 NGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKVLSLIQ 176 (178)
Q Consensus 99 ~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~D 176 (178)
++ ++++||. ... ++.+.+++..|..+|. ++|.++.+++..++..+..............++...++++.|
T Consensus 2 ~~-~~~~~~~-----~~~-~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITD-CSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELD 71 (646)
T ss_pred CC-cchhhhc-----ccC-CChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcc
Confidence 46 8999988 333 6788999999999998 899999999999999876665545556677777777777765
No 116
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=90.61 E-value=0.18 Score=39.61 Aligned_cols=61 Identities=16% Similarity=0.349 Sum_probs=45.1
Q ss_pred HHHHHHhhcccCCCCCcccHHHHHHH---HhcCCCCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHh
Q 030405 50 LYELFKKISSAVIDDGLINKEEFQLA---LFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSI 113 (178)
Q Consensus 50 l~~~F~~~d~~~~~~g~i~~~ef~~~---l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~ 113 (178)
++=.|..+|.| +++.|.+.|++.+ +.+. .....=.+.+|+..|.|+|..|++.|+...+..
T Consensus 335 v~w~F~qLdkN--~nn~i~rrEwKpFK~~l~k~-s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 335 VHWYFNQLDKN--SNNDIERREWKPFKRVLLKK-SKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeeccc--ccCccchhhcchHHHHHHhh-ccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 34467888988 8888998887654 3221 122223578999999999999999999988754
No 117
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.55 E-value=1.6 Score=29.09 Aligned_cols=52 Identities=27% Similarity=0.356 Sum_probs=41.7
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHHHHHh--hcC----CCCCHHHHHHHHHHHHhhcc
Q 030405 125 EFSFQLYDLKQQGFIERQEVKQMVVATLT--ESG----MNLSDDVIESIIDKVLSLIQ 176 (178)
Q Consensus 125 ~~~F~~~D~d~~G~I~~~e~~~~l~~~~~--~~~----~~l~~~~~~~~~~~~~~~~D 176 (178)
-..|.+.|.|++|.|+--|+...+..... ..| +-.|+.|++.+++.++.+-|
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdD 127 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDD 127 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccc
Confidence 34799999999999999999999887644 333 23567899999999988766
No 118
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=89.95 E-value=1.2 Score=28.34 Aligned_cols=53 Identities=17% Similarity=0.320 Sum_probs=33.8
Q ss_pred hHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHh---hcCCCCCHHHHHHHHHHHHhh
Q 030405 121 DDKIEFSFQLYDLKQQGFIERQEVKQMVVATLT---ESGMNLSDDVIESIIDKVLSL 174 (178)
Q Consensus 121 ~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~---~~~~~l~~~~~~~~~~~~~~~ 174 (178)
.++.+.+|+.+ .|.+|.++..-|..+|..+++ ..|+..+=.-++..++.+|..
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~ 57 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQ 57 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcc
Confidence 36788999999 688999999999999887644 334322222266777777765
No 119
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=89.38 E-value=1.2 Score=37.78 Aligned_cols=141 Identities=16% Similarity=0.239 Sum_probs=72.0
Q ss_pred ccccccchhhhhhhcccCccccCCCCCCCcHHHHHhh---cCCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHH--Hh
Q 030405 3 QCLDGLKHFCVVVVNCCDADLYKQPRGLEDPEALARE---TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLA--LF 77 (178)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~--l~ 77 (178)
+++..|.++|.--..+.++-++- ..+..+++. ..+...+++.++...+...+++..+..++..-|..+ +.
T Consensus 192 ~~v~al~RIFki~D~d~D~~Lsd-----~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lf 266 (625)
T KOG1707|consen 192 RCVKALKRIFKISDSDNDGALSD-----AELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLF 266 (625)
T ss_pred HHHHHHHHHHhhhccccccccch-----hhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHH
Confidence 34555666666666666666554 444444433 345566667777776666554333344554444332 11
Q ss_pred c-CCCCCHHHHHHHHHHHhcCCCCcccHHHHHH-HHHh-----hCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 030405 78 K-TNKKESLFADRVFDLFDTKHNGILDFEEFAR-ALSI-----FHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVA 150 (178)
Q Consensus 78 ~-~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~-~~~~-----~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~ 150 (178)
. .+...+ ...+.+.|.-+.+-.++=+ ++. .+.. ..-...--+.+..+|..||.|+||.++.+|+..+...
T Consensus 267 iergr~Et--tW~iLR~fgY~DsleL~~~-~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~ 343 (625)
T KOG1707|consen 267 IERGRHET--TWTILRKFGYTDSLELTDE-YLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFST 343 (625)
T ss_pred HHhccccc--hhhhhhhcCCcchhhhhhh-hcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhh
Confidence 1 111111 1234444444333222211 111 0000 0000011245778999999999999999999999876
Q ss_pred H
Q 030405 151 T 151 (178)
Q Consensus 151 ~ 151 (178)
.
T Consensus 344 ~ 344 (625)
T KOG1707|consen 344 A 344 (625)
T ss_pred C
Confidence 5
No 120
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=88.94 E-value=1.6 Score=34.95 Aligned_cols=110 Identities=16% Similarity=0.288 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCC--CCCHHHHHHHHHHHhcC-CCCcccHHHHHHHHHhhCCCC
Q 030405 42 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTN--KKESLFADRVFDLFDTK-HNGILDFEEFARALSIFHPNS 118 (178)
Q Consensus 42 ~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~--~~~~~~~~~lf~~~d~~-~~g~i~~~ef~~~~~~~~~~~ 118 (178)
.+.+..+.|......+... ...+.+...+...-.... ...+...+.+|...... ++..++++.+......... +
T Consensus 14 ~naE~~~~l~~~kk~~~~g--a~~k~t~dq~v~~~~~~~~~~l~e~~~q~~f~~vk~~~q~~~~~l~k~~~~~~~~~~-g 90 (427)
T KOG2557|consen 14 INAETQKKLDDLKKLFVSG--ASNKQTNDQYVSYPVFQEYFGLSESLGQRMFDMVKQRRQDDKMTLEKLVIAKATYEK-G 90 (427)
T ss_pred cCHHHHHHHHHHhhccccc--cchhhhhhhhhhcccccchhhhhhhccceEeeeccCccCCccchHHHHhhHHhhhcc-C
Confidence 4555555666665555322 334566666655422211 11122234556665443 3346999998887776665 6
Q ss_pred ChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhh
Q 030405 119 PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTE 154 (178)
Q Consensus 119 ~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~ 154 (178)
..++.+..++...|.+++|......+.+++..++..
T Consensus 91 t~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~vlks 126 (427)
T KOG2557|consen 91 TDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVVVLKS 126 (427)
T ss_pred cccHHHHHHHHHHhhccccccchhHHHHHHHHHhhh
Confidence 778889999999999999999999999999877553
No 121
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=88.86 E-value=3.4 Score=26.65 Aligned_cols=68 Identities=9% Similarity=0.146 Sum_probs=52.0
Q ss_pred ccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 030405 102 LDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKVLS 173 (178)
Q Consensus 102 i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 173 (178)
|.-.+|.-++..+.. ..+++++..+-..+-.++....+..|+...+..+ ++...++++++.+..++-+
T Consensus 20 vP~~Dy~PLlALL~r-~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~v---t~~~P~~~di~RV~~~Laa 87 (96)
T PF11829_consen 20 VPPTDYVPLLALLRR-RLTDDEVAEVAAELAARGDPPVDRIDIGVAITRV---TDELPTPEDIERVRARLAA 87 (96)
T ss_dssp B-HHHHHHHHHHHTT-TS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHH---CSS-S-HHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHhcc-cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH---HcCCcCHHHHHHHHHHHHh
Confidence 888889988888887 5888888888888877777777999999999887 4667889999988877643
No 122
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=88.71 E-value=0.7 Score=36.62 Aligned_cols=62 Identities=19% Similarity=0.306 Sum_probs=50.1
Q ss_pred HHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhh
Q 030405 48 EALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSIF 114 (178)
Q Consensus 48 ~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~ 114 (178)
..+.=+|..+|.+ .++.++.+|+..+.. -+.+.=++-+|+..|...+|.|+-.||...+..-
T Consensus 250 ds~gWMFnklD~N--~Dl~Ld~sEl~~I~l---dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 250 DSLGWMFNKLDTN--YDLLLDQSELRAIEL---DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred hhhhhhhhccccc--cccccCHHHhhhhhc---cCchhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 3466689999999 999999999988752 2334446889999999999999999998887643
No 123
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=88.70 E-value=1.7 Score=34.07 Aligned_cols=89 Identities=20% Similarity=0.289 Sum_probs=56.8
Q ss_pred HHHhhcccCCCCCcccHHHHHHHHhc----CC-CCC-HHH-----------HHHHHHHHhcCCCCcccHHHHHHHHHhhC
Q 030405 53 LFKKISSAVIDDGLINKEEFQLALFK----TN-KKE-SLF-----------ADRVFDLFDTKHNGILDFEEFARALSIFH 115 (178)
Q Consensus 53 ~F~~~d~~~~~~g~i~~~ef~~~l~~----~~-~~~-~~~-----------~~~lf~~~d~~~~g~i~~~ef~~~~~~~~ 115 (178)
.|...|.+ ++|.++..++..++.. .. .++ +.. -+.+++.+|.|.+..|+.++|+.....-.
T Consensus 249 FF~LHD~N--sDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ke 326 (442)
T KOG3866|consen 249 FFALHDLN--SDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKE 326 (442)
T ss_pred heeeeccC--CcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhcc
Confidence 56666777 8999999988876533 11 111 111 13467888999999999999998765433
Q ss_pred CCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 030405 116 PNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVA 150 (178)
Q Consensus 116 ~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~ 150 (178)
- +.+.+.|.. .+..-..|-+|++++=.-
T Consensus 327 f-~~p~e~WEt------l~q~~~yTeEEL~~fE~e 354 (442)
T KOG3866|consen 327 F-NPPKEEWET------LGQKKVYTEEELQQFERE 354 (442)
T ss_pred c-CCcchhhhh------hcccccccHHHHHHHHHH
Confidence 2 344444442 344556677777776443
No 124
>PLN02952 phosphoinositide phospholipase C
Probab=88.26 E-value=7.6 Score=33.54 Aligned_cols=86 Identities=15% Similarity=0.104 Sum_probs=59.1
Q ss_pred CCCcccHHHHHHHHhc---CCCCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCC-ChhHHHHHHHHhh-------
Q 030405 63 DDGLINKEEFQLALFK---TNKKESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNS-PIDDKIEFSFQLY------- 131 (178)
Q Consensus 63 ~~g~i~~~ef~~~l~~---~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~-~~~e~~~~~F~~~------- 131 (178)
.+|.+++.+|..+... ........+..+|..+..++ +.++.++|..++...+... ...+.+..+|..+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 4689999999776543 22334567899999997654 5799999999999887632 2344555565543
Q ss_pred CCCCCCceeHHHHHHHHH
Q 030405 132 DLKQQGFIERQEVKQMVV 149 (178)
Q Consensus 132 D~d~~G~I~~~e~~~~l~ 149 (178)
...+.+.++.+.|..+|.
T Consensus 92 ~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred ccccccCcCHHHHHHHHc
Confidence 112334689999998884
No 125
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=86.66 E-value=1.4 Score=30.38 Aligned_cols=33 Identities=15% Similarity=0.259 Sum_probs=19.2
Q ss_pred CCcccHHHHHHHHHhhCCCCChhHHHHHHHHhh
Q 030405 99 NGILDFEEFARALSIFHPNSPIDDKIEFSFQLY 131 (178)
Q Consensus 99 ~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~ 131 (178)
.+.|+|+.|...+........+++.-+.+|..|
T Consensus 46 ~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF 78 (138)
T PF14513_consen 46 EEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSF 78 (138)
T ss_dssp TTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS
T ss_pred CCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 346777777777776665455555666677766
No 126
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=86.20 E-value=3.4 Score=35.14 Aligned_cols=74 Identities=12% Similarity=0.116 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCC-CCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCC
Q 030405 41 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTN-KKESLFADRVFDLFDTKHNGILDFEEFARALSIFHP 116 (178)
Q Consensus 41 ~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~-~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~ 116 (178)
.++++++...+.+|..+|.+ ..|++...+....+...+ .-+....+++.+..+.+-.|.+...+|...+..+..
T Consensus 586 ~~~~~~~~~~~~rf~~lD~~--k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~ 660 (680)
T KOG0042|consen 586 KLTPEDFLRRKTRFAFLDAD--KKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKN 660 (680)
T ss_pred ccCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhc
Confidence 35666666666777666665 566666666666665533 223344555666666655666666666666665544
No 127
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=85.28 E-value=4.4 Score=35.57 Aligned_cols=63 Identities=11% Similarity=0.242 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 030405 87 ADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 151 (178)
Q Consensus 87 ~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~ 151 (178)
...+++.||...+|.|..-+|...+..+.+ ...+++++.+|...-..+.-.+ ...|..+|..+
T Consensus 472 lN~llNvyD~~R~g~irvls~ki~~i~lck-~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dl 534 (966)
T KOG4286|consen 472 LNWLLNVYDTGRTGRIRVLSFKIGIISLCK-AHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDL 534 (966)
T ss_pred HHHHHHhcccCCCcceEEeeehhhHHHHhc-chhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHH
Confidence 467899999999999999999999888887 6778999999999965555443 55565555543
No 128
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=84.45 E-value=7 Score=34.32 Aligned_cols=68 Identities=21% Similarity=0.279 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 030405 83 ESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 151 (178)
Q Consensus 83 ~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~ 151 (178)
.+.++..+|...|.+++|.+++.+-..++..+.. .-....++.+|+..|..++|.+..+++..+-..+
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~-~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~ 201 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNV-QLSESKARRLFKESDNSQTGKLEEEEFVKFRKEL 201 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHHHH-hhhHHHHHHHHHHHHhhccceehHHHHHHHHHhh
Confidence 3456788999999999999999998887776554 4556789999999999999999999998876654
No 129
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=83.95 E-value=12 Score=26.19 Aligned_cols=83 Identities=17% Similarity=0.226 Sum_probs=54.0
Q ss_pred HHHHHHH---hcCCCCcccHHHHHHHHHh--hCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHH
Q 030405 88 DRVFDLF---DTKHNGILDFEEFARALSI--FHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDD 162 (178)
Q Consensus 88 ~~lf~~~---d~~~~g~i~~~ef~~~~~~--~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~ 162 (178)
+.+|..| ...+...++-..|..+|.. +....-....+..+|..+-..+...|++++|..+|..+....+..-+
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~~~~~-- 79 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKGKDKS-- 79 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHSCCCT--
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhhcccc--
Confidence 4566666 2334567999999988874 22324566778899999866666779999999999988655443333
Q ss_pred HHHHHHHHHH
Q 030405 163 VIESIIDKVL 172 (178)
Q Consensus 163 ~~~~~~~~~~ 172 (178)
++++++..+.
T Consensus 80 ~~~~~~~kl~ 89 (154)
T PF05517_consen 80 SAEELKEKLT 89 (154)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 5555665553
No 130
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=80.59 E-value=11 Score=27.12 Aligned_cols=100 Identities=14% Similarity=0.062 Sum_probs=55.7
Q ss_pred HHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCCCHH--HHHHHHHHHhc--CCCCcccHHHHHHHHHhhC---------
Q 030405 49 ALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESL--FADRVFDLFDT--KHNGILDFEEFARALSIFH--------- 115 (178)
Q Consensus 49 ~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~--~~~~lf~~~d~--~~~g~i~~~ef~~~~~~~~--------- 115 (178)
.|.....-+|++ ++|.|.+.|-...+...+...-. .+.-+....-. ...+-+.-.-|...+..+.
T Consensus 8 ~LQqHvaFFDrd--~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg 85 (174)
T PF05042_consen 8 VLQQHVAFFDRD--KDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSG 85 (174)
T ss_pred HHhhhhceeCCC--CCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcc
Confidence 466666778888 99999998877766554433211 11111111100 0111111111111111111
Q ss_pred ----CCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 030405 116 ----PNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVA 150 (178)
Q Consensus 116 ----~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~ 150 (178)
...-..++...+|..++..+.+.+|..|+..+++.
T Consensus 86 ~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 86 AYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred ccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 00123467899999999989999999999999876
No 131
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=79.16 E-value=3.4 Score=18.68 Aligned_cols=17 Identities=12% Similarity=0.307 Sum_probs=12.2
Q ss_pred CCCCCCceeHHHHHHHH
Q 030405 132 DLKQQGFIERQEVKQMV 148 (178)
Q Consensus 132 D~d~~G~I~~~e~~~~l 148 (178)
|.|++|.|+.-|+.-+-
T Consensus 1 DvN~DG~vna~D~~~lk 17 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLK 17 (21)
T ss_dssp -TTSSSSSSHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHH
Confidence 67888888888876543
No 132
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=78.68 E-value=4.3 Score=34.97 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=36.7
Q ss_pred ccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 030405 102 LDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 151 (178)
Q Consensus 102 i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~ 151 (178)
|+|.+|...+..+..-......+..+|+.+|.+++|.|+..++...|..+
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l 584 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSIL 584 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHH
Confidence 55556666655544322233457889999999999999999999998876
No 133
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=77.64 E-value=4.5 Score=24.42 Aligned_cols=48 Identities=21% Similarity=0.242 Sum_probs=31.7
Q ss_pred CcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 030405 100 GILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 151 (178)
Q Consensus 100 g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~ 151 (178)
..|+|..+...+..... .+.+..+...|+.=..+.|+++||.+.++.+
T Consensus 7 p~~~F~~L~~~l~~~l~----~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 7 PWMPFPMLFSALSKHLP----PSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CcccHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 34666666666655443 3445555555555568889999999988887
No 134
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=76.96 E-value=3.5 Score=28.49 Aligned_cols=71 Identities=18% Similarity=0.243 Sum_probs=42.4
Q ss_pred ccccCCCCCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcc----cCCCCCcccHHHHHHHHhc-CC-CCCHHHHHHHHHHH
Q 030405 21 ADLYKQPRGLEDPEALARETVFSVSEIEALYELFKKISS----AVIDDGLINKEEFQLALFK-TN-KKESLFADRVFDLF 94 (178)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~F~~~d~----~~~~~g~i~~~ef~~~l~~-~~-~~~~~~~~~lf~~~ 94 (178)
..++| .++.++++....+...++.....|+.-.. + ..+.|+.+.|+.+|.. .. -.+.+..+.||..|
T Consensus 6 ~~lsp-----~eF~qLq~y~eys~kklkdvl~eF~~~g~~~~~~--~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF 78 (138)
T PF14513_consen 6 VSLSP-----EEFAQLQKYSEYSTKKLKDVLKEFHGDGSLAKYN--PEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSF 78 (138)
T ss_dssp S-S-H-----HHHHHHHHHHHH----HHHHHHHH-HTSGGGGGE--ETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS
T ss_pred eccCH-----HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC--CCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45667 88999999988888888888888863111 1 3458999999988755 22 25567789999999
Q ss_pred hcCC
Q 030405 95 DTKH 98 (178)
Q Consensus 95 d~~~ 98 (178)
....
T Consensus 79 ~~~~ 82 (138)
T PF14513_consen 79 QKKP 82 (138)
T ss_dssp ----
T ss_pred hCcc
Confidence 7654
No 135
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=74.73 E-value=8.4 Score=33.00 Aligned_cols=90 Identities=14% Similarity=0.187 Sum_probs=57.2
Q ss_pred cCCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCC-CCCHHHHHHHHHHH-hcCCCCcccHHHHHHHHHhhCCC
Q 030405 40 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTN-KKESLFADRVFDLF-DTKHNGILDFEEFARALSIFHPN 117 (178)
Q Consensus 40 ~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~-~~~~~~~~~lf~~~-d~~~~g~i~~~ef~~~~~~~~~~ 117 (178)
..++..-++.+...|..+|.+ ++|-++..++..++...+ .+.. ...+... -.+..|.+++.-|+..|...+--
T Consensus 307 ~ELs~~~~~Fl~~~f~~~D~d--~Dg~L~p~El~~LF~~~P~~pW~---~~~~~~~t~~~~~G~ltl~g~l~~WsL~Tll 381 (625)
T KOG1707|consen 307 VELSPKGYRFLVDVFEKFDRD--NDGALSPEELKDLFSTAPGSPWT---SSPYKDSTVKNERGWLTLNGFLSQWSLMTLL 381 (625)
T ss_pred eeccHHHHHHHHHHHHhccCC--CCCCcCHHHHHHHhhhCCCCCCC---CCcccccceecccceeehhhHHHHHHHHhhc
Confidence 457888899999999999999 999999999998875522 2210 0000000 01256889999999988765431
Q ss_pred CChhHHHHHHHHhhCCC
Q 030405 118 SPIDDKIEFSFQLYDLK 134 (178)
Q Consensus 118 ~~~~e~~~~~F~~~D~d 134 (178)
........-+|--|..+
T Consensus 382 d~~~t~~~L~Ylgf~~~ 398 (625)
T KOG1707|consen 382 DPRRTLEYLAYLGFPTD 398 (625)
T ss_pred cHHHHHHHHHhcCCccc
Confidence 11222233455555554
No 136
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=74.31 E-value=65 Score=29.46 Aligned_cols=65 Identities=20% Similarity=0.320 Sum_probs=48.1
Q ss_pred ccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhc------CCCCCHHHHHHHHHH
Q 030405 102 LDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTES------GMNLSDDVIESIIDK 170 (178)
Q Consensus 102 i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~------~~~l~~~~~~~~~~~ 170 (178)
.+++-|..++..+.. +.++..+|..+..++.-++|.++|..+|..--+++ -++++...+..+++.
T Consensus 205 f~~e~f~~~l~klcp----R~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liek 275 (1189)
T KOG1265|consen 205 FTLEKFYRLLNKLCP----RPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEK 275 (1189)
T ss_pred ccHHHHHHHHHhcCC----chhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHH
Confidence 556666777766654 46799999999998889999999999997643332 246777777776654
No 137
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=73.72 E-value=6.3 Score=37.43 Aligned_cols=58 Identities=21% Similarity=0.399 Sum_probs=41.5
Q ss_pred HHHhhcccCCCCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCcccHHHHHHHHH
Q 030405 53 LFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALS 112 (178)
Q Consensus 53 ~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~ 112 (178)
.|..+|++ +.|.|++.+|.+++...........+.+......+.+...+|++|+.-+.
T Consensus 4062 tfkeydpd--gkgiiskkdf~kame~~k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4062 TFKEYDPD--GKGIISKKDFHKAMEGHKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cchhcCCC--CCccccHHHHHHHHhccccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 35556777 88999999999988663323334456777777777778899999986553
No 138
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=72.86 E-value=1.6 Score=31.94 Aligned_cols=56 Identities=21% Similarity=0.284 Sum_probs=37.1
Q ss_pred HHHHhc-CCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 030405 91 FDLFDT-KHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVV 149 (178)
Q Consensus 91 f~~~d~-~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~ 149 (178)
|-.+|. -.+|.++-.|++-+-.-+. ..+.-+...|.-.|.|+||+|+.+|+-..+.
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap~i---pme~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAPLI---PMEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred eccccCCCccccccccccccccCCcc---cHHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 334444 2467888887766544332 2344567788888888888888888876653
No 139
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=72.01 E-value=14 Score=20.04 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhcccCCCCCcccHHHHHHHHhc
Q 030405 46 EIEALYELFKKISSAVIDDGLINKEEFQLALFK 78 (178)
Q Consensus 46 ~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~ 78 (178)
.+..+...|+.++..-+....+++.+|+.++..
T Consensus 4 ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 4 AIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 466788888888643223568999999998855
No 140
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=70.85 E-value=19 Score=32.47 Aligned_cols=65 Identities=20% Similarity=0.142 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCCh-hHHHHHHHHhh---CCCCCCceeHHHHHHHHHHH
Q 030405 87 ADRVFDLFDTKHNGILDFEEFARALSIFHPNSPI-DDKIEFSFQLY---DLKQQGFIERQEVKQMVVAT 151 (178)
Q Consensus 87 ~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~-~e~~~~~F~~~---D~d~~G~I~~~e~~~~l~~~ 151 (178)
+..+|+.++....|..++++|..++..+..+... ++-+..+|++. |.++.|.++..++.+.|..=
T Consensus 749 lrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 749 LRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred HHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 5678999999888999999999999888764443 23355556555 66777999999999998764
No 141
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.09 E-value=6.8 Score=31.60 Aligned_cols=41 Identities=17% Similarity=0.314 Sum_probs=33.0
Q ss_pred ChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHH
Q 030405 119 PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDV 163 (178)
Q Consensus 119 ~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~ 163 (178)
.+.+.++.+|..+|..+.|+|+-.-+..++..+ +..+++..
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~----N~~vse~a 346 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTAL----NRLVSEPA 346 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHh----cccccCHH
Confidence 455779999999999999999999999998775 44455543
No 142
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=69.47 E-value=26 Score=22.98 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=39.8
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhc
Q 030405 125 EFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKVLSLI 175 (178)
Q Consensus 125 ~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 175 (178)
..+-+.+...++|.--+++-.+.+...+...|.++|+++++.+++....++
T Consensus 54 ~aveq~~~~~~~G~~K~~~A~~~v~~~L~~~gi~~t~~~i~~~IEaAV~~m 104 (108)
T PF09682_consen 54 NAVEQVAKEGGKGEEKKAEAVQYVKERLKKKGIKVTDEQIEGAIEAAVKEM 104 (108)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 344555555558888888888888877788889999999999999887765
No 143
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=69.41 E-value=22 Score=25.30 Aligned_cols=51 Identities=12% Similarity=0.231 Sum_probs=33.6
Q ss_pred ChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhh
Q 030405 119 PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKVLSL 174 (178)
Q Consensus 119 ~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 174 (178)
.+...+..+++++-.++...++.++|...+ .-|..+|+++++..+...+.+
T Consensus 82 kt~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~c-----GVGV~VT~E~I~~~V~~~i~~ 132 (164)
T PF04558_consen 82 KTNLQLDAALKYLKSNPSEPIDVAEFEKAC-----GVGVVVTPEQIEAAVEKYIEE 132 (164)
T ss_dssp -SHHHHHHHHHHHHHHGG-G--HHHHHHTT-----TTT----HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHHHHc-----CCCeEECHHHHHHHHHHHHHH
Confidence 345678889999866666689999999876 236789999999999888764
No 144
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=68.94 E-value=22 Score=28.11 Aligned_cols=52 Identities=19% Similarity=0.332 Sum_probs=35.8
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCH--------HHHHHHHHHHHhhcc
Q 030405 125 EFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSD--------DVIESIIDKVLSLIQ 176 (178)
Q Consensus 125 ~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~--------~~~~~~~~~~~~~~D 176 (178)
...|.+.|.|++|+++-.|+..++..=+.....+-++ ++.-.|-+++|..+|
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vD 306 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVD 306 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcc
Confidence 3578899999999999999999887644433322221 233356677777766
No 145
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=64.19 E-value=41 Score=27.00 Aligned_cols=64 Identities=19% Similarity=0.298 Sum_probs=49.0
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHh
Q 030405 88 DRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLT 153 (178)
Q Consensus 88 ~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~ 153 (178)
..+...+|..+.|.++.--....+..+.. +.-.++++.+|.+.. |..|.+..-.+.+++..++.
T Consensus 113 aflLaA~ds~~~g~~~vfavkialatlc~-gk~~dklryIfs~is-ds~gim~~i~~~~fl~evls 176 (434)
T KOG4301|consen 113 AFLLAAEDSEGQGKQQVFAVKIALATLCG-GKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVLS 176 (434)
T ss_pred HHHHhhcCccCCCCceeecchhhhhhhcc-chHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHc
Confidence 44566678888888887766677777766 566788999999994 67888888888888876544
No 146
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=63.84 E-value=33 Score=21.33 Aligned_cols=55 Identities=22% Similarity=0.219 Sum_probs=33.7
Q ss_pred cCCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCC
Q 030405 40 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNG 100 (178)
Q Consensus 40 ~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g 100 (178)
.+|+.+++..++.+|..+-. +..+.++-...+..... ..+.+..+...+.....|
T Consensus 26 ~Gfs~~~i~~l~~ayr~l~~-----~~~~~~~a~~~l~~~~~-~~~~v~~~~~Fi~~S~RG 80 (83)
T PF13720_consen 26 RGFSKEEISALRRAYRILFR-----SGLTLEEALEELEEEYP-DSPEVREIVDFIRNSKRG 80 (83)
T ss_dssp TTS-HHHHHHHHHHHHHHHT-----SSS-HHHHHHHHHHHTT-SCHHHHHHHHHHHHTSS-
T ss_pred cCCCHHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHhcc-CCHHHHHHHHHHHhCCCC
Confidence 46999999999999998753 23566666555544222 245567777666554444
No 147
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=63.03 E-value=15 Score=22.73 Aligned_cols=31 Identities=19% Similarity=0.487 Sum_probs=16.7
Q ss_pred CCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 030405 135 QQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKV 171 (178)
Q Consensus 135 ~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 171 (178)
..|+||++|+..+|.. ..++.++++.++..+
T Consensus 18 ~~G~lT~~eI~~~L~~------~~~~~e~id~i~~~L 48 (82)
T PF03979_consen 18 KKGYLTYDEINDALPE------DDLDPEQIDEIYDTL 48 (82)
T ss_dssp HHSS-BHHHHHHH-S-------S---HHHHHHHHHHH
T ss_pred hcCcCCHHHHHHHcCc------cCCCHHHHHHHHHHH
Confidence 4677888888777622 346677776666554
No 148
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=62.22 E-value=7.6 Score=22.93 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=19.6
Q ss_pred HhhCCCCCCceeHHHHHHHHHH
Q 030405 129 QLYDLKQQGFIERQEVKQMVVA 150 (178)
Q Consensus 129 ~~~D~d~~G~I~~~e~~~~l~~ 150 (178)
++||...+.+|+.+++.+++..
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4789999999999999999864
No 149
>PF09873 DUF2100: Uncharacterized protein conserved in archaea (DUF2100); InterPro: IPR019210 This entry represents various hypothetical archaeal proteins, and has no known function.
Probab=61.06 E-value=27 Score=25.84 Aligned_cols=39 Identities=15% Similarity=0.279 Sum_probs=24.4
Q ss_pred CCCceeHHHHHHHHHHHHhh--------cCCCCCHHHHHHHHHHHHh
Q 030405 135 QQGFIERQEVKQMVVATLTE--------SGMNLSDDVIESIIDKVLS 173 (178)
Q Consensus 135 ~~G~I~~~e~~~~l~~~~~~--------~~~~l~~~~~~~~~~~~~~ 173 (178)
..|.|+.++|+.++..+..+ +.+.++.++..+++..+|.
T Consensus 38 k~G~Id~~e~kkav~~liEAde~lYksaP~H~L~~E~AkeFck~l~~ 84 (215)
T PF09873_consen 38 KPGKIDVEEFKKAVYSLIEADEYLYKSAPSHELNGEEAKEFCKLLFK 84 (215)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHhcCCcccccHhHHHHHHHHHHH
Confidence 46677777777766665442 3346777777776666654
No 150
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=59.95 E-value=31 Score=23.33 Aligned_cols=77 Identities=13% Similarity=0.235 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 030405 88 DRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESI 167 (178)
Q Consensus 88 ~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~ 167 (178)
..+++.|-. +.|+-+.....+....+-..++..+..++..+=.| ..+..+++++. -+.+++++++..+
T Consensus 40 ~~Il~mFl~---~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~~~n-------~~I~~Il~~~v--d~~~l~dddi~~l 107 (122)
T PF06648_consen 40 IKILKMFLN---DEIDVEDMYNLFGAVDGLKLTRSQIDYLYNRVYNN-------RYIINILQKFV--DGQHLTDDDISYL 107 (122)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHhcccHhhcCHHHHHHHHHHHHcc-------HHHHHHHHHHh--cCccCCcccHHHH
Confidence 344555543 24666665555544321123333344444443111 33444444432 1457888888888
Q ss_pred HHHHHhhcc
Q 030405 168 IDKVLSLIQ 176 (178)
Q Consensus 168 ~~~~~~~~D 176 (178)
.+-+..++|
T Consensus 108 s~FLV~ein 116 (122)
T PF06648_consen 108 SEFLVHEIN 116 (122)
T ss_pred HHHHHHHHH
Confidence 777777665
No 151
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=58.05 E-value=4.5 Score=29.71 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=34.8
Q ss_pred CCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhh
Q 030405 63 DDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSIF 114 (178)
Q Consensus 63 ~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~ 114 (178)
.+|+++-.++.-+ ..+-.+.+.-..+.|...|.|++|.|+..||...+..-
T Consensus 201 ~d~~~sh~el~pl-~ap~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~gik 251 (259)
T KOG4004|consen 201 IDGYLSHTELAPL-RAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIK 251 (259)
T ss_pred ccccccccccccc-cCCcccHHhhchhhhhcccCCCCCceeHHHhhcccCcc
Confidence 3566666666442 22223334446789999999999999999998877543
No 152
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=57.77 E-value=46 Score=21.11 Aligned_cols=82 Identities=15% Similarity=0.096 Sum_probs=44.6
Q ss_pred CCCcccHHHHHHH---HhcCCCCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCce
Q 030405 63 DDGLINKEEFQLA---LFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFI 139 (178)
Q Consensus 63 ~~g~i~~~ef~~~---l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I 139 (178)
.+|.++..|...+ +.............+...+........++.+|...+...........-+..+|+..-. ||.+
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~A--DG~~ 89 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAYA--DGEL 89 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh--cCCC
Confidence 3577777765543 2222122233446666666555455678888877765443212222345566666543 5667
Q ss_pred eHHHHHH
Q 030405 140 ERQEVKQ 146 (178)
Q Consensus 140 ~~~e~~~ 146 (178)
+..|-.-
T Consensus 90 ~~~E~~~ 96 (104)
T cd07313 90 DEYEEHL 96 (104)
T ss_pred CHHHHHH
Confidence 7777543
No 153
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=57.76 E-value=42 Score=20.80 Aligned_cols=34 Identities=12% Similarity=0.328 Sum_probs=25.1
Q ss_pred eHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 030405 140 ERQEVKQMVVATLTESGMNLSDDVIESIIDKVLS 173 (178)
Q Consensus 140 ~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 173 (178)
+...++++++.+....|.++|.+..+.+++.+..
T Consensus 29 dE~~vR~lIk~vs~~an~~Vs~~~ed~IV~~I~~ 62 (79)
T PF14069_consen 29 DEKKVRQLIKQVSQIANKPVSKEQEDQIVQAIIN 62 (79)
T ss_pred cHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 5566777777776667888888888888777654
No 154
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=57.47 E-value=40 Score=27.92 Aligned_cols=99 Identities=16% Similarity=0.097 Sum_probs=59.9
Q ss_pred CCCcccHHHHHHHHhc---CC--CCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCC
Q 030405 63 DDGLINKEEFQLALFK---TN--KKESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQG 137 (178)
Q Consensus 63 ~~g~i~~~ef~~~l~~---~~--~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G 137 (178)
++...+..+|+.+... .+ .-.-+.++.|.+.+|.|.+|.|+.+|=-.++.--++..+...+-...|-- .|.
T Consensus 41 gds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD~ 116 (575)
T KOG4403|consen 41 GDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DDK 116 (575)
T ss_pred CCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC----Ccc
Confidence 5567778888765422 11 11123467889999999999999998666655433323333444444433 467
Q ss_pred ceeHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 030405 138 FIERQEVKQMVVATLTESGMNLSDDVIESII 168 (178)
Q Consensus 138 ~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~ 168 (178)
.|+.+|+...-..- .-.+++.++.-+++
T Consensus 117 ~ItVedLWeaW~~S---ev~nWT~e~tvqWL 144 (575)
T KOG4403|consen 117 HITVEDLWEAWKES---EVHNWTNERTVQWL 144 (575)
T ss_pred ceeHHHHHHHHHhh---hhhcchHHHHHHHH
Confidence 89999976654332 13467766655544
No 155
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=56.39 E-value=49 Score=21.83 Aligned_cols=43 Identities=14% Similarity=0.300 Sum_probs=32.1
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 030405 125 EFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKV 171 (178)
Q Consensus 125 ~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 171 (178)
..+|-+++.-++...+..+++.+|..+ |-+.+++.++.++.++
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sV----G~E~d~e~i~~visel 46 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESV----GAEIDDERINLVLSEL 46 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHh----CcccCHHHHHHHHHHh
Confidence 345666777777778888888888777 7788888777776654
No 156
>PF14164 YqzH: YqzH-like protein
Probab=56.27 E-value=40 Score=19.94 Aligned_cols=34 Identities=9% Similarity=0.065 Sum_probs=27.7
Q ss_pred HHHHHHHhhCCC-CCCceeHHHHHHHHHHHHhhcC
Q 030405 123 KIEFSFQLYDLK-QQGFIERQEVKQMVVATLTESG 156 (178)
Q Consensus 123 ~~~~~F~~~D~d-~~G~I~~~e~~~~l~~~~~~~~ 156 (178)
.++..|+.|..| ....++..|++.+.+.+....+
T Consensus 9 mi~~~l~QYg~d~~~~pls~~E~~~L~~~i~~~~~ 43 (64)
T PF14164_consen 9 MIINCLRQYGYDVECMPLSDEEWEELCKHIQERKN 43 (64)
T ss_pred HHHHHHHHhCCcccCCCCCHHHHHHHHHHHHHHHh
Confidence 477899999877 7789999999999998855433
No 157
>PLN02228 Phosphoinositide phospholipase C
Probab=56.21 E-value=84 Score=27.20 Aligned_cols=27 Identities=26% Similarity=0.591 Sum_probs=11.5
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHhhC
Q 030405 87 ADRVFDLFDTKHNGILDFEEFARALSIFH 115 (178)
Q Consensus 87 ~~~lf~~~d~~~~g~i~~~ef~~~~~~~~ 115 (178)
+..+|..+..+ +.++.++|..++...+
T Consensus 26 i~~if~~~s~~--~~~t~~~~~~FL~~~Q 52 (567)
T PLN02228 26 IKRLFEAYSRN--GKMSFDELLRFVSEVQ 52 (567)
T ss_pred HHHHHHHhcCC--CccCHHHHHHHHHHhc
Confidence 34444444321 2355555444444433
No 158
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=54.89 E-value=36 Score=29.30 Aligned_cols=64 Identities=19% Similarity=0.254 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 030405 87 ADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 151 (178)
Q Consensus 87 ~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~ 151 (178)
.+.-|..+|.++.+.++.......+..... +.+++.+....+..|.+-.|.+...|+.+++..+
T Consensus 595 ~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~-~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 595 RKTRFAFLDADKKAYQAIADVLKVLKSENV-GWDEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 345688899999999999999999887764 6778888999999999999999999999998776
No 159
>PLN02859 glutamine-tRNA ligase
Probab=54.71 E-value=1.4e+02 Score=27.05 Aligned_cols=51 Identities=14% Similarity=0.281 Sum_probs=39.3
Q ss_pred ChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhh
Q 030405 119 PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKVLSL 174 (178)
Q Consensus 119 ~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 174 (178)
.+...+..+|+.+-..+...++..+|...+ ..|..+|++++++.+...+.+
T Consensus 84 kT~~Ql~AA~kYl~~~~~~~~d~~~Fek~C-----GVGV~VT~EqI~~~V~~~i~~ 134 (788)
T PLN02859 84 KTPAQLEAAFSFFSSTGPESFDLNKFEEAC-----GVGVVVSPEDIEAAVNEVFEE 134 (788)
T ss_pred CCHHHHHHHHHHHHhCCCCccCHHHHHHhC-----CCCEEECHHHHHHHHHHHHHh
Confidence 445678899999966666688888888775 225789999999998888764
No 160
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.78 E-value=8.9 Score=34.61 Aligned_cols=72 Identities=24% Similarity=0.343 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhC
Q 030405 41 VFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSIFH 115 (178)
Q Consensus 41 ~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~ 115 (178)
..+......+.+.|...|.+ .+|+|+..+....+...++.. ..+..++...+..+.|.+++.+|...+..+.
T Consensus 276 ~vsp~d~~~~~~if~q~d~~--~dG~I~s~~~~~~f~~~gl~~-~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~ 347 (847)
T KOG0998|consen 276 KVSPSDKQKYSKIFSQVDKD--NDGSISSNEARNIFLPFGLSK-PRLAHVWLLADTQNTGTLSKDEFALAMHLLE 347 (847)
T ss_pred ccChHHHHHHHHHHHhcccc--CCCcccccccccccccCCCCh-hhhhhhhhhcchhccCcccccccchhhhhhh
Confidence 35666777778888888887 788888888887766644333 3357788888888888888888877665544
No 161
>COG5611 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=53.66 E-value=65 Score=21.57 Aligned_cols=48 Identities=23% Similarity=0.287 Sum_probs=22.8
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 030405 123 KIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKVL 172 (178)
Q Consensus 123 ~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 172 (178)
++.+.|..+...+.++|...=+..+.--+. .+..++.+.+.++++.++
T Consensus 22 ka~Q~f~~~s~~~k~fI~~~vliE~V~vL~--~~y~~~rE~i~~VIetll 69 (130)
T COG5611 22 KAEQFFEELSQKGKLFIPEEVLIELVYVLE--HGYKWEREDIYEVIETLL 69 (130)
T ss_pred HHHHHHHhcCcCCCccchHHHHHHHHHHHH--hcchhhHHHHHHHHHHHh
Confidence 355556666666666665543222222110 134555555555555444
No 162
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=53.01 E-value=12 Score=19.85 Aligned_cols=30 Identities=27% Similarity=0.286 Sum_probs=20.9
Q ss_pred ccCCCCCCCcHHHHHhhcCCCHHHHHHHHH
Q 030405 23 LYKQPRGLEDPEALARETVFSVSEIEALYE 52 (178)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 52 (178)
+..|.|+.++...+...++++..++..+..
T Consensus 6 ~~nPYPs~~ek~~L~~~tgls~~Qi~~WF~ 35 (40)
T PF05920_consen 6 LHNPYPSKEEKEELAKQTGLSRKQISNWFI 35 (40)
T ss_dssp TTSGS--HHHHHHHHHHHTS-HHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 345667778888999999999998876653
No 163
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=51.83 E-value=49 Score=19.60 Aligned_cols=42 Identities=14% Similarity=0.217 Sum_probs=30.2
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 030405 125 EFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKV 171 (178)
Q Consensus 125 ~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 171 (178)
++.|+.+= ..+-.|+.+-++.++..+ |...|+.++..+...+
T Consensus 19 r~~~~k~l-~~NPpine~mir~M~~QM----G~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 19 RKYMEKQL-KENPPINEKMIRAMMMQM----GRKPSEKQIKQMMRSM 60 (64)
T ss_pred HHHHHHHH-HHCCCCCHHHHHHHHHHh----CCCccHHHHHHHHHHH
Confidence 34444442 235578988888887776 9999999999887765
No 164
>PRK00523 hypothetical protein; Provisional
Probab=50.29 E-value=56 Score=19.83 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=30.8
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 030405 125 EFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKV 171 (178)
Q Consensus 125 ~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 171 (178)
+..|+.+= ..+-.|+.+-++.++..+ |...|+.++..+...+
T Consensus 27 rk~~~k~l-~~NPpine~mir~M~~QM----GqKPSekki~Q~m~~m 68 (72)
T PRK00523 27 KKMFKKQI-RENPPITENMIRAMYMQM----GRKPSESQIKQVMRSV 68 (72)
T ss_pred HHHHHHHH-HHCcCCCHHHHHHHHHHh----CCCccHHHHHHHHHHH
Confidence 44555552 235678888888887776 9999999999887765
No 165
>PLN02222 phosphoinositide phospholipase C 2
Probab=48.09 E-value=1.1e+02 Score=26.69 Aligned_cols=66 Identities=18% Similarity=0.312 Sum_probs=34.1
Q ss_pred cCCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhc-CC--CCCHHHHHHHHHHHhc-CCCCcccHHHHHHHHH
Q 030405 40 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFK-TN--KKESLFADRVFDLFDT-KHNGILDFEEFARALS 112 (178)
Q Consensus 40 ~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~-~~--~~~~~~~~~lf~~~d~-~~~g~i~~~ef~~~~~ 112 (178)
....+.++..++..| . +++.|+.++|..+|.. .+ ......+..+++.+.. ...+.++++.|...+.
T Consensus 20 ~~~~~~ei~~if~~~---~----~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 20 ASEAPREIKTIFEKY---S----ENGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred cCCCcHHHHHHHHHh---c----CCCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 444455444444443 2 2356777777776644 11 1233445666665432 1234577777766663
No 166
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=48.04 E-value=46 Score=18.19 Aligned_cols=33 Identities=30% Similarity=0.612 Sum_probs=23.8
Q ss_pred CCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 030405 135 QQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDK 170 (178)
Q Consensus 135 ~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~ 170 (178)
..|.|+ +.+.++..+ ...|..+++..++.+++.
T Consensus 14 ~~GlI~--~~~~~l~~l-~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 14 RRGLIS--EVKPLLDRL-QQAGFRISPKLIEEILRR 46 (48)
T ss_pred HcCChh--hHHHHHHHH-HHcCcccCHHHHHHHHHH
Confidence 467777 777777776 556888998887776654
No 167
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.45 E-value=40 Score=27.68 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHH
Q 030405 87 ADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVK 145 (178)
Q Consensus 87 ~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~ 145 (178)
.+++|-.+..- +|+|+=..-..-+..- ..+..-+-.+|++.|.|+||.++.+||-
T Consensus 446 yde~fy~l~p~-~gk~sg~~ak~~mv~s---klpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 446 YDEIFYTLSPV-NGKLSGRNAKKEMVKS---KLPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred hHhhhhccccc-CceeccchhHHHHHhc---cCchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 35555555443 3444433333222211 3344555666677777777777777664
No 168
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=47.24 E-value=50 Score=20.93 Aligned_cols=27 Identities=4% Similarity=-0.001 Sum_probs=11.1
Q ss_pred HHHHHHHHhhCCCCCCceeHHHHHHHH
Q 030405 122 DKIEFSFQLYDLKQQGFIERQEVKQMV 148 (178)
Q Consensus 122 e~~~~~F~~~D~d~~G~I~~~e~~~~l 148 (178)
+....++..+........+..++.+.+
T Consensus 37 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ 63 (104)
T cd07313 37 EEAAELLAEAEALEEEAPDLYEFTSLI 63 (104)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 333444444433333334444444443
No 169
>PLN02230 phosphoinositide phospholipase C 4
Probab=46.43 E-value=1.3e+02 Score=26.32 Aligned_cols=29 Identities=7% Similarity=0.126 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHhhC
Q 030405 86 FADRVFDLFDTKHNGILDFEEFARALSIFH 115 (178)
Q Consensus 86 ~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~ 115 (178)
.+..+|..+..++ +.++.++|..++...+
T Consensus 30 ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q 58 (598)
T PLN02230 30 DVRDLFEKYADGD-AHMSPEQLQKLMAEEG 58 (598)
T ss_pred HHHHHHHHHhCCC-CccCHHHHHHHHHHhC
Confidence 3455555554332 4455555555555444
No 170
>PLN02222 phosphoinositide phospholipase C 2
Probab=45.46 E-value=95 Score=26.97 Aligned_cols=12 Identities=0% Similarity=-0.125 Sum_probs=5.1
Q ss_pred ceeHHHHHHHHH
Q 030405 138 FIERQEVKQMVV 149 (178)
Q Consensus 138 ~I~~~e~~~~l~ 149 (178)
.|...+....++
T Consensus 171 ~i~f~~v~~~I~ 182 (581)
T PLN02222 171 PVGLIKCLKAIR 182 (581)
T ss_pred ceeHHHHHHHHH
Confidence 344444444443
No 171
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=45.40 E-value=84 Score=20.90 Aligned_cols=42 Identities=19% Similarity=0.359 Sum_probs=28.3
Q ss_pred HHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 030405 126 FSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKV 171 (178)
Q Consensus 126 ~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 171 (178)
.+|-+.-.-|+..+|.+++..+|.+. |.+++...+..+++.+
T Consensus 7 aAYlL~~lgG~~~pTaddI~kIL~Aa----GveVd~~~~~l~~~~L 48 (112)
T PTZ00373 7 AAYLMCVLGGNENPTKKEVKNVLSAV----NADVEDDVLDNFFKSL 48 (112)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHc----CCCccHHHHHHHHHHH
Confidence 34445555566678888888888776 7777777666665543
No 172
>PLN02228 Phosphoinositide phospholipase C
Probab=43.71 E-value=1.3e+02 Score=26.00 Aligned_cols=63 Identities=17% Similarity=0.356 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcC-C--CCCHHHHHHHHHHHhcC----CCCcccHHHHHHHHH
Q 030405 43 SVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKT-N--KKESLFADRVFDLFDTK----HNGILDFEEFARALS 112 (178)
Q Consensus 43 ~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~-~--~~~~~~~~~lf~~~d~~----~~g~i~~~ef~~~~~ 112 (178)
.+.++..++..+. +++.|+.++|..+|... + ......+..++..+... ..|.++.+.|...+.
T Consensus 22 ~~~ei~~if~~~s-------~~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 22 PPVSIKRLFEAYS-------RNGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred CcHHHHHHHHHhc-------CCCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhc
Confidence 4556555555443 23579999999988652 2 22345577888887543 236799999988774
No 173
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=43.47 E-value=25 Score=19.20 Aligned_cols=38 Identities=16% Similarity=0.138 Sum_probs=23.0
Q ss_pred cchhhhhhhcccCccccCCCCCCCcHHHHHhhcCCCHHHHHHH
Q 030405 8 LKHFCVVVVNCCDADLYKQPRGLEDPEALARETVFSVSEIEAL 50 (178)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 50 (178)
++++...++.+..+..+. ..+..+.....|+++|.+.+
T Consensus 8 LKNvl~~fl~~~~~~~~~-----~llpvi~tlL~fs~~e~~~i 45 (46)
T PF01465_consen 8 LKNVLLQFLESREPSERE-----QLLPVIATLLKFSPEEKQKI 45 (46)
T ss_dssp HHHHHHHHHTTSS---HH-----HHHHHHHHHTT--HHHHHHH
T ss_pred HHHHHHHHhcCCchhhHH-----HHHHHHHHHHCCCHHHHHhh
Confidence 455566666665544444 57777888899999987765
No 174
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=43.25 E-value=2.1e+02 Score=26.31 Aligned_cols=109 Identities=17% Similarity=0.166 Sum_probs=61.9
Q ss_pred cCCCHHHHHHHH-HHHHhhcccCCCCCcccHHHHHHHHhcCCCCCHHHHHHHHHHH--hcCCCCcccHHHHHHHHHhhCC
Q 030405 40 TVFSVSEIEALY-ELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLF--DTKHNGILDFEEFARALSIFHP 116 (178)
Q Consensus 40 ~~~~~~~i~~l~-~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~--d~~~~g~i~~~ef~~~~~~~~~ 116 (178)
.+.++.+|.+|. ..+...|.. .-..|+..+++.++.....+... .+.+-..+ |.-+++.++|++|..+...++-
T Consensus 135 ~a~~p~qI~~wlrk~~ysvd~~--~~~~isard~k~~l~qvn~k~~~-~kfl~e~~ted~~~k~dlsf~~f~~ly~~lmf 211 (1267)
T KOG1264|consen 135 NAPTPLQIERWLRKQIYSVDQT--RENSISARDLKTILPQVNFKVSS-AKFLKEKFTEDGARKDDLSFEQFHLLYKKLMF 211 (1267)
T ss_pred cCCChHHHHHHHHhhheeccch--hhhheeHHhhhcccccceEEech-HHHHHHHHhHhhhccccccHHHHHHHHHHHhh
Confidence 346677777765 566677765 55679999999887653333221 12222233 2234677999999887766543
Q ss_pred CCChhHHHH--HHH--HhhCCCCCCceeHHHHHHHHHHH
Q 030405 117 NSPIDDKIE--FSF--QLYDLKQQGFIERQEVKQMVVAT 151 (178)
Q Consensus 117 ~~~~~e~~~--~~F--~~~D~d~~G~I~~~e~~~~l~~~ 151 (178)
.......+. ..| ..=+.-.--.++..||.++|..-
T Consensus 212 s~~~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~ 250 (1267)
T KOG1264|consen 212 SQQKAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHE 250 (1267)
T ss_pred ccchhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhh
Confidence 221111111 111 11122233588999999998653
No 175
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=43.21 E-value=32 Score=22.38 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=31.7
Q ss_pred CCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHH
Q 030405 97 KHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQ 146 (178)
Q Consensus 97 ~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~ 146 (178)
-+.|.|.|+=|..-...-.. .+..+....++.+-|.-+.|.+-..++..
T Consensus 21 ~~kG~VH~~C~~~~~~~k~~-~~~~~~~~aL~~l~~~l~~~iV~~kel~~ 69 (101)
T PF09943_consen 21 TKKGPVHYECFREKASKKLY-GDVPEDLAALLSLEDYLHEGIVYKKELER 69 (101)
T ss_pred ecCCcEeHHHHHHHHhhhcc-cChhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34578888888776655444 45556677777777777776665554443
No 176
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=42.84 E-value=25 Score=20.58 Aligned_cols=27 Identities=7% Similarity=0.096 Sum_probs=19.8
Q ss_pred ceeHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 030405 138 FIERQEVKQMVVATLTESGMNLSDDVIESII 168 (178)
Q Consensus 138 ~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~ 168 (178)
.|+.+||..+|+++ ..-++.++++.+.
T Consensus 29 ~it~~DF~~Al~~~----kpSVs~~dl~~ye 55 (62)
T PF09336_consen 29 PITMEDFEEALKKV----KPSVSQEDLKKYE 55 (62)
T ss_dssp HBCHHHHHHHHHTC----GGSS-HHHHHHHH
T ss_pred CCCHHHHHHHHHHc----CCCCCHHHHHHHH
Confidence 48889999988775 5678888877654
No 177
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=42.09 E-value=36 Score=29.84 Aligned_cols=69 Identities=25% Similarity=0.392 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCC----CC----ChhHHHHHHHHhhCCCCC----------------
Q 030405 81 KKESLFADRVFDLFDTKHNGILDFEEFARALSIFHP----NS----PIDDKIEFSFQLYDLKQQ---------------- 136 (178)
Q Consensus 81 ~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~----~~----~~~e~~~~~F~~~D~d~~---------------- 136 (178)
........+++..+|.+.++..+|.+|......+.. .. +...+...+|..+|.+++
T Consensus 433 ~~~~c~~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~ 512 (975)
T KOG2419|consen 433 ETEECFAKRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSY 512 (975)
T ss_pred cchhhhhhhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhccc
Confidence 334455678888999999999999988765443321 00 001123457888899998
Q ss_pred -------CceeHHHHHHHHH
Q 030405 137 -------GFIERQEVKQMVV 149 (178)
Q Consensus 137 -------G~I~~~e~~~~l~ 149 (178)
|.++.+|...++.
T Consensus 513 ~~~~~s~~~vtVDe~v~ll~ 532 (975)
T KOG2419|consen 513 PFLKKSFGVVTVDELVALLA 532 (975)
T ss_pred cccccccCeeEHHHHHHHHH
Confidence 9999999998887
No 178
>PRK01844 hypothetical protein; Provisional
Probab=40.18 E-value=86 Score=19.04 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=30.7
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 030405 125 EFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKV 171 (178)
Q Consensus 125 ~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 171 (178)
+..|+.+= ..+-.|+.+-++.++..+ |...|+.++..+...+
T Consensus 26 rk~~~k~l-k~NPpine~mir~Mm~QM----GqkPSekki~Q~m~~m 67 (72)
T PRK01844 26 RKYMMNYL-QKNPPINEQMLKMMMMQM----GQKPSQKKINQMMSAM 67 (72)
T ss_pred HHHHHHHH-HHCCCCCHHHHHHHHHHh----CCCccHHHHHHHHHHH
Confidence 44555552 235578988888887776 9999999999888765
No 179
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=40.12 E-value=1.4e+02 Score=22.76 Aligned_cols=57 Identities=23% Similarity=0.237 Sum_probs=35.1
Q ss_pred hhcCCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCC
Q 030405 38 RETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNG 100 (178)
Q Consensus 38 ~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g 100 (178)
+-.+|++++++.++++|+.+-. + .++.++-...+... ....+.++.+.+.+...+.|
T Consensus 196 ~r~g~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~s~rg 252 (255)
T PRK12461 196 RRRGFSSRAIRALKRAYKIIYR----S-GLSVQQAVAELELQ-QFESPEVEELIDFIKASKRG 252 (255)
T ss_pred hhcCCCHHHHHHHHHHHHHHHh----c-CCCHHHHHHHHHHh-ccCCHHHHHHHHHHHccCCC
Confidence 3356999999999999987742 2 35556655444432 22344456666666544444
No 180
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=39.89 E-value=26 Score=23.00 Aligned_cols=22 Identities=18% Similarity=0.602 Sum_probs=18.9
Q ss_pred HhhCCCCCCceeHHHHHHHHHH
Q 030405 129 QLYDLKQQGFIERQEVKQMVVA 150 (178)
Q Consensus 129 ~~~D~d~~G~I~~~e~~~~l~~ 150 (178)
++||+..+-+|+.+++.+++..
T Consensus 10 RLYDT~tS~YITLedi~~lV~~ 31 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVRE 31 (107)
T ss_pred cccCCCccceeeHHHHHHHHHC
Confidence 4689999999999999998854
No 181
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=39.76 E-value=1e+02 Score=21.58 Aligned_cols=31 Identities=10% Similarity=0.345 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhcccCCCCCcccHHHHHHHHh
Q 030405 45 SEIEALYELFKKISSAVIDDGLINKEEFQLALF 77 (178)
Q Consensus 45 ~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~ 77 (178)
..+..+-+.....|.. +.++||-++++.++.
T Consensus 66 ~~Lq~L~~rL~~le~~--rg~Y~TiSeLKT~vy 96 (148)
T PF12486_consen 66 TQLQQLADRLNQLEEQ--RGKYMTISELKTAVY 96 (148)
T ss_pred HHHHHHHHHHHHHHHh--cCCceeHHHHHHHHH
Confidence 3455666666666766 566788888877763
No 182
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=39.52 E-value=1e+02 Score=21.72 Aligned_cols=82 Identities=22% Similarity=0.310 Sum_probs=44.7
Q ss_pred HHHHHHHHhhc-ccCCCCC-cccHHHHHHHHhcCC-CC----CHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCC----
Q 030405 48 EALYELFKKIS-SAVIDDG-LINKEEFQLALFKTN-KK----ESLFADRVFDLFDTKHNGILDFEEFARALSIFHP---- 116 (178)
Q Consensus 48 ~~l~~~F~~~d-~~~~~~g-~i~~~ef~~~l~~~~-~~----~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~---- 116 (178)
+.-.+.|..+- .. .+| .|+-..|..++..-. .. ..-.....|..+-...-+.++|++|...+..+..
T Consensus 15 ~~~f~~Fa~fGd~~--asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela~~R~k 92 (180)
T KOG4070|consen 15 EESFRAFAKFGDSK--ASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELATKRFK 92 (180)
T ss_pred HHHHHHHHHcCCcc--ccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHHHhhhc
Confidence 33444555442 22 344 477777777653311 11 1122456677776666678999999877765441
Q ss_pred CCChhHHHHHHHHhh
Q 030405 117 NSPIDDKIEFSFQLY 131 (178)
Q Consensus 117 ~~~~~e~~~~~F~~~ 131 (178)
....++.+..+.+++
T Consensus 93 ~Ks~ee~l~~I~~ll 107 (180)
T KOG4070|consen 93 GKSKEEALDAICQLL 107 (180)
T ss_pred CCCHHHHHHHHHHHH
Confidence 134445555555554
No 183
>TIGR01673 holin_LLH phage holin, LL-H family. This model represents a putative phage holin from a number of phage and prophage regions of Gram-positive bacteria. Like other holins, it is small (about 100 amino acids) with stretches of hydrophobic sequence and is encoded adjacent to lytic enzymes.
Probab=39.35 E-value=1.1e+02 Score=20.13 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=40.2
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHhhc
Q 030405 124 IEFSFQLYDLKQQGFIERQEVKQMVVATLTESGM-NLSDDVIESIIDKVLSLI 175 (178)
Q Consensus 124 ~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~-~l~~~~~~~~~~~~~~~~ 175 (178)
...+.+..+..++|.--.+.-...+...+...|. .+|+.+++-.++.....+
T Consensus 52 v~aVeq~~~~~~~G~~K~~~A~~~v~~~L~~~~i~~~t~~~i~~~IE~aV~~M 104 (108)
T TIGR01673 52 VSAVQQNFNESGGGAEKLEQAFNYITEELKKAHIPKPSDAQIEGAIEAAVAEM 104 (108)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 4556777766777888888888888777777786 899999999988876643
No 184
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=38.33 E-value=1e+02 Score=19.40 Aligned_cols=50 Identities=14% Similarity=0.115 Sum_probs=32.0
Q ss_pred cccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 030405 101 ILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 151 (178)
Q Consensus 101 ~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~ 151 (178)
.+|.+|++.......- .-+++.+..+....=.+.=.....++-..+++.+
T Consensus 14 ~iT~~eLlkyskqy~i-~it~~QA~~I~~~lr~k~inIfn~~~r~~llkei 63 (85)
T PF11116_consen 14 NITAKELLKYSKQYNI-SITKKQAEQIANILRGKNINIFNEQERKKLLKEI 63 (85)
T ss_pred cCCHHHHHHHHHHhCC-CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 4777777776665554 3445566666666655555566777777777666
No 185
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=38.02 E-value=1.6e+02 Score=21.65 Aligned_cols=30 Identities=3% Similarity=0.137 Sum_probs=22.6
Q ss_pred ChhHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 030405 119 PIDDKIEFSFQLYDLKQQGFIERQEVKQMV 148 (178)
Q Consensus 119 ~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l 148 (178)
...+-...+-+.|.+|+.|.|+...+..+.
T Consensus 116 ~~~~l~~lV~~af~~dk~G~l~~~rIl~Lr 145 (195)
T PF11363_consen 116 ADPELRALVNRAFQVDKEGNLNTSRILGLR 145 (195)
T ss_pred CChHHHHHHHHHHhcCCCCCcCHHHHHHHH
Confidence 344444556778899999999999888765
No 186
>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis]
Probab=37.99 E-value=1.5e+02 Score=25.54 Aligned_cols=49 Identities=27% Similarity=0.509 Sum_probs=30.0
Q ss_pred HHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhh-----------cC-CCCCHHHHHHHHHHHHh
Q 030405 122 DKIEFSFQLYDLKQQGFIERQEVKQMVVATLTE-----------SG-MNLSDDVIESIIDKVLS 173 (178)
Q Consensus 122 e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~-----------~~-~~l~~~~~~~~~~~~~~ 173 (178)
+.++.+|+++ .+|.|+.+-+..+|+.++.. .| ..++.+|++.+++++..
T Consensus 523 ~~i~~~~~~~---~~g~iake~iee~l~~l~~~p~~~~~e~~~~~gL~~ls~eEve~iI~eii~ 583 (631)
T COG2511 523 EHIEELLRLV---SEGKIAKEAIEEILKALAENPGKDAAEIAEKLGLKELSEEEVEKIIDEIIE 583 (631)
T ss_pred HHHHHHHHHH---hcccchHHHHHHHHHHHHhCCCCCHHHHHHHhccccCCHHHHHHHHHHHHH
Confidence 4455555555 36667777777777666532 12 25677788877777763
No 187
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=37.86 E-value=45 Score=16.67 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=13.8
Q ss_pred CCCceeHHHHHHHHHHH
Q 030405 135 QQGFIERQEVKQMVVAT 151 (178)
Q Consensus 135 ~~G~I~~~e~~~~l~~~ 151 (178)
+.|.|+.+|+.++...+
T Consensus 1 ~~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 1 SSGTISKEEYLDMASRV 17 (33)
T ss_pred CCceecHHHHHHHHHHH
Confidence 36789999999888876
No 188
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=37.27 E-value=72 Score=31.10 Aligned_cols=56 Identities=14% Similarity=0.348 Sum_probs=31.1
Q ss_pred HHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHH
Q 030405 91 FDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMV 148 (178)
Q Consensus 91 f~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l 148 (178)
|+.+|+++.|.|+-.+|-..+..-. .-+..++.++..-...|.+..++++||..-+
T Consensus 4063 fkeydpdgkgiiskkdf~kame~~k--~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4063 FKEYDPDGKGIISKKDFHKAMEGHK--HYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred chhcCCCCCccccHHHHHHHHhccc--cchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 4555666666666666666554221 2334455555555556666666666665543
No 189
>PF14493 HTH_40: Helix-turn-helix domain
Probab=36.76 E-value=1.1e+02 Score=19.12 Aligned_cols=26 Identities=15% Similarity=0.027 Sum_probs=18.1
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHhh
Q 030405 32 DPEALARETVFSVSEIEALYELFKKI 57 (178)
Q Consensus 32 ~~~~~~~~~~~~~~~i~~l~~~F~~~ 57 (178)
.+.++.+..+++.+.+......+...
T Consensus 15 si~eIA~~R~L~~sTI~~HL~~~~~~ 40 (91)
T PF14493_consen 15 SIEEIAKIRGLKESTIYGHLAELIES 40 (91)
T ss_pred CHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 46777778888888876666655543
No 190
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.29 E-value=96 Score=21.02 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=28.8
Q ss_pred CCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhcc
Q 030405 135 QQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKVLSLIQ 176 (178)
Q Consensus 135 ~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~D 176 (178)
..|.||.+|-.++|-- ..+++.++++.-.+++|+-=|
T Consensus 52 ~~~~iTlqEa~qILnV-----~~~ln~eei~k~yehLFevNd 88 (132)
T KOG3442|consen 52 SNGKITLQEAQQILNV-----KEPLNREEIEKRYEHLFEVND 88 (132)
T ss_pred ccccccHHHHhhHhCC-----CCCCCHHHHHHHHHHHHhccC
Confidence 3467999999998822 357899999999999987544
No 191
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=36.25 E-value=1.3e+02 Score=19.88 Aligned_cols=39 Identities=18% Similarity=0.360 Sum_probs=25.2
Q ss_pred HHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 030405 127 SFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIID 169 (178)
Q Consensus 127 ~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~ 169 (178)
+|-+.-..|+..+|.+++..+|+.. |.++...-+..+++
T Consensus 6 AylL~~l~g~~~pTa~dI~~IL~Aa----GveVe~~~~~lf~~ 44 (109)
T cd05833 6 AYLLAVLGGNASPSAADVKKILGSV----GVEVDDEKLNKVIS 44 (109)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHc----CCCccHHHHHHHHH
Confidence 4444445566678888888887765 66666665555544
No 192
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=36.19 E-value=42 Score=18.40 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=27.0
Q ss_pred cchhhhhhhcccCccccCCCCCCCcHHHHHhhcCCCHHHHHHHHH
Q 030405 8 LKHFCVVVVNCCDADLYKQPRGLEDPEALARETVFSVSEIEALYE 52 (178)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 52 (178)
+++....+|.+.... +. ..+..+.....|++++.+.+..
T Consensus 7 LKNVll~fl~~~e~~-r~-----~ll~vi~tlL~fs~~e~~~~~~ 45 (46)
T smart00755 7 LKNVLLQFLTLRESE-RE-----TLLKVISTVLQLSPEEMQKLLE 45 (46)
T ss_pred HHHHHHHHhccCcch-HH-----HHHHHHHHHhCCCHHHHHHHHh
Confidence 456666667666654 33 6677788888999998877653
No 193
>PF12674 Zn_ribbon_2: Putative zinc ribbon domain
Probab=35.19 E-value=1.1e+02 Score=18.99 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=18.8
Q ss_pred eeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhh
Q 030405 139 IERQEVKQMVVATLTESGMNLSDDVIESIIDKVLSL 174 (178)
Q Consensus 139 I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 174 (178)
+|.+|+...+...+...+. ++++++..++...+..
T Consensus 42 ~t~eemie~~~~~~~~~~~-~~~~~a~~~~~~~lp~ 76 (81)
T PF12674_consen 42 ITMEEMIEFCVPFMDEFNG-MTPEEARKMMPRYLPT 76 (81)
T ss_pred CCHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHccC
Confidence 4566655555544443332 6666666666655543
No 194
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=35.03 E-value=48 Score=22.25 Aligned_cols=79 Identities=20% Similarity=0.214 Sum_probs=39.7
Q ss_pred CCCcccHHHHHHHHh---c-CCCCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCc
Q 030405 63 DDGLINKEEFQLALF---K-TNKKESLFADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGF 138 (178)
Q Consensus 63 ~~g~i~~~ef~~~l~---~-~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~ 138 (178)
.+|.++..|...+.. . .+.. ......+...++.......++.++...+...........-++.++.+.-.| |.
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~AD--G~ 112 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLS-PEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYAD--GE 112 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGS-CHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTCT--TC
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhcC--CC
Confidence 478899888765532 2 2222 233455555554433345777887765543211111123356677777665 55
Q ss_pred eeHHHH
Q 030405 139 IERQEV 144 (178)
Q Consensus 139 I~~~e~ 144 (178)
++..|-
T Consensus 113 ~~~~E~ 118 (140)
T PF05099_consen 113 ISPEEQ 118 (140)
T ss_dssp -SCCHH
T ss_pred CCHHHH
Confidence 666653
No 195
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=34.88 E-value=84 Score=18.32 Aligned_cols=24 Identities=17% Similarity=0.455 Sum_probs=18.3
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHH
Q 030405 124 IEFSFQLYDLKQQGFIERQEVKQMV 148 (178)
Q Consensus 124 ~~~~F~~~D~d~~G~I~~~e~~~~l 148 (178)
-..||++| .+..|.|+..|+-..|
T Consensus 9 rdkA~e~y-~~~~g~i~lkdIA~~L 32 (60)
T PF10668_consen 9 RDKAFEIY-KESNGKIKLKDIAEKL 32 (60)
T ss_pred HHHHHHHH-HHhCCCccHHHHHHHH
Confidence 45677777 6678889988887766
No 196
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=34.88 E-value=62 Score=15.89 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=14.6
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHHH
Q 030405 124 IEFSFQLYDLKQQGFIERQEVKQMVVAT 151 (178)
Q Consensus 124 ~~~~F~~~D~d~~G~I~~~e~~~~l~~~ 151 (178)
+..+=.+++ .|.||.+||.+.-..+
T Consensus 5 L~~L~~l~~---~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 5 LEKLKELYD---KGEISEEEYEQKKARL 29 (31)
T ss_pred HHHHHHHHH---cCCCCHHHHHHHHHHH
Confidence 333444443 6777777777665444
No 197
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=34.64 E-value=37 Score=22.71 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCCCCcccHHHHHHHHH
Q 030405 84 SLFADRVFDLFDTKHNGILDFEEFARALS 112 (178)
Q Consensus 84 ~~~~~~lf~~~d~~~~g~i~~~ef~~~~~ 112 (178)
++..+++++.+-.|..|.+.|.+|+.-+.
T Consensus 6 DeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 6 DEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred HHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 44568899999999999999999988665
No 198
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=34.41 E-value=94 Score=22.47 Aligned_cols=33 Identities=9% Similarity=0.406 Sum_probs=21.6
Q ss_pred CCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 030405 133 LKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIID 169 (178)
Q Consensus 133 ~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~ 169 (178)
.|.+|.+..+++...+..- +..++.+++.++++
T Consensus 28 ld~~G~v~v~~Ll~~~~~~----~~~~t~~~l~~vV~ 60 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKA----YKWVTRELLEAVVE 60 (179)
T ss_pred cCCCCCEEHHHHHHHHHHc----cCCCCHHHHHHHHH
Confidence 5677778877777766432 34567777776654
No 199
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=34.09 E-value=1.2e+02 Score=27.03 Aligned_cols=60 Identities=20% Similarity=0.332 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHh
Q 030405 86 FADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLT 153 (178)
Q Consensus 86 ~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~ 153 (178)
.+..+|+.....+...+..+.|...+ .+|.++.+|..|+...++.|+++.|+.....++.
T Consensus 405 aA~~iF~nv~~p~~~~i~ld~~~~f~--------~~E~a~~~~slfe~~~~~~Itrs~~~~~iv~~~~ 464 (714)
T KOG4629|consen 405 AARKIFKNVAKPGVILIDLDDLLRFM--------GDEEAERAFSLFEGASDENITRSSFKEWIVNIYR 464 (714)
T ss_pred HHHHHHhccCCCCccchhhhhhhhcC--------CHHHHHHHHHhhhhhcccCccHHHHHHHHHHHHH
Confidence 35678888777665555555444433 3477888999998866667999999999988754
No 200
>PLN02230 phosphoinositide phospholipase C 4
Probab=32.95 E-value=1.5e+02 Score=25.85 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=36.4
Q ss_pred ChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 030405 119 PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKVL 172 (178)
Q Consensus 119 ~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 172 (178)
.+..+++.+|..|-. +.+.++.++|.++|...-+.. ...+.+++..+++.+.
T Consensus 26 ~p~~ei~~lf~~~s~-~~~~mt~~~l~~FL~~~Q~~~-~~~~~~~~~~i~~~~~ 77 (598)
T PLN02230 26 GPVADVRDLFEKYAD-GDAHMSPEQLQKLMAEEGGGE-GETSLEEAERIVDEVL 77 (598)
T ss_pred CCcHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCc-ccCCHHHHHHHHHHHH
Confidence 456789999999954 448999999999997752111 1346666777776553
No 201
>PHA00369 H minor spike protein
Probab=32.83 E-value=67 Score=24.26 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhccCC
Q 030405 141 RQEVKQMVVATLTESGMNLSDDVIESIIDKVLSLIQLI 178 (178)
Q Consensus 141 ~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~D~~ 178 (178)
..|+.+.+-+-.+..|.+++..++.++-+++-.++|+|
T Consensus 224 t~EIMR~~LT~AQ~tGQh~TN~QI~~l~rKV~Aei~~v 261 (325)
T PHA00369 224 TSEIMRQMLTQAQTTGQHFTNDQIMELTRKVYAEIDKV 261 (325)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHH
Confidence 34444433322345688999999999999999999875
No 202
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=32.83 E-value=75 Score=18.27 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=15.8
Q ss_pred CCCcHHHHHhhcCCCHHHHHHHHH
Q 030405 29 GLEDPEALARETVFSVSEIEALYE 52 (178)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~i~~l~~ 52 (178)
.+.++..+...++++.++++.|..
T Consensus 24 ~E~DL~~L~~kS~ms~qqVr~WFa 47 (56)
T PF11569_consen 24 QEEDLDELCDKSRMSYQQVRDWFA 47 (56)
T ss_dssp -TTHHHHHHHHTT--HHHHHHHHH
T ss_pred cHhhHHHHHHHHCCCHHHHHHHHH
Confidence 447888888888888887666543
No 203
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.43 E-value=58 Score=29.65 Aligned_cols=69 Identities=23% Similarity=0.427 Sum_probs=54.8
Q ss_pred cCCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCcccHHHHHHHHH
Q 030405 40 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALS 112 (178)
Q Consensus 40 ~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~ 112 (178)
-.++..+.......|..+.+. +|.++-...+.++....+.. ..+.+++...|.+.+|.+++.||...+.
T Consensus 121 p~~~~qe~aky~q~f~s~~p~---~g~~sg~~~~pil~~s~Lp~-~~l~~iw~l~d~d~~g~Ld~~ef~~am~ 189 (847)
T KOG0998|consen 121 PAITPQEQAKYDQIFRSLSPS---NGLLSGDKAKPILLNSKLPS-DVLGRIWELSDIDKDGNLDRDEFAVAMH 189 (847)
T ss_pred CCCCHHHHHHHHHHHhccCCC---CCccccchhhhhhhcCCCCh-hhhccccccccccccCCCChhhhhhhhh
Confidence 346778888888889988874 88888888888876654443 3457889999999999999999987665
No 204
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=31.80 E-value=52 Score=18.12 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=21.9
Q ss_pred CCCCCCcHHHHHhhcCCCHHHHHHHHHH
Q 030405 26 QPRGLEDPEALARETVFSVSEIEALYEL 53 (178)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 53 (178)
+.|+...+..+...++++..+|..+...
T Consensus 23 ~~P~~~~~~~la~~~~l~~~qV~~WF~n 50 (59)
T cd00086 23 PYPSREEREELAKELGLTERQVKIWFQN 50 (59)
T ss_pred CCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 3556688999999999999888777543
No 205
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=31.75 E-value=1.1e+02 Score=17.75 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=16.9
Q ss_pred hhHHHHHHHHhh--CCCCCCceeHHHHHHHHHHHH
Q 030405 120 IDDKIEFSFQLY--DLKQQGFIERQEVKQMVVATL 152 (178)
Q Consensus 120 ~~e~~~~~F~~~--D~d~~G~I~~~e~~~~l~~~~ 152 (178)
+-+++...+++| +. +...++.+|++.+|..+.
T Consensus 13 ~l~RIh~mLkmf~~~~-~~~~~s~~eL~~fL~~lv 46 (60)
T PF08672_consen 13 PLDRIHSMLKMFPKDP-GGYDISLEELQEFLDRLV 46 (60)
T ss_dssp EHHHHHHHHHHH-GGG---TT--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhccCCC-CCCCCCHHHHHHHHHHHH
Confidence 445666666666 33 344567777777766553
No 206
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=31.65 E-value=2.2e+02 Score=21.16 Aligned_cols=44 Identities=9% Similarity=0.070 Sum_probs=29.2
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhc
Q 030405 123 KIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKVLSLI 175 (178)
Q Consensus 123 ~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 175 (178)
....+.........|.+|..++..-+ .++..-..+.++.+..+.
T Consensus 175 ~~~~il~~~~~~~~g~vt~~~l~~~~---------~ws~~~a~~~L~~~~~~G 218 (223)
T PF04157_consen 175 DQSRILELAEEENGGGVTASELAEKL---------GWSVERAKEALEELEREG 218 (223)
T ss_dssp HHHHHHHHH--TTTSEEEHHHHHHHH---------TB-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHh---------CCCHHHHHHHHHHHHhCC
Confidence 34556666634567899999998876 577777777777765543
No 207
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.42 E-value=79 Score=26.06 Aligned_cols=59 Identities=25% Similarity=0.403 Sum_probs=40.4
Q ss_pred HHHHHHhhcccCCCCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCcccHHHHHHHHH
Q 030405 50 LYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALS 112 (178)
Q Consensus 50 l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~ 112 (178)
..+.|..+.+. +|+|+-..-+..+-...++ +..+.++++..|.+.+|.++=+||...-.
T Consensus 446 yde~fy~l~p~---~gk~sg~~ak~~mv~sklp-nsvlgkiwklad~d~dg~ld~eefala~h 504 (532)
T KOG1954|consen 446 YDEIFYTLSPV---NGKLSGRNAKKEMVKSKLP-NSVLGKIWKLADIDKDGMLDDEEFALANH 504 (532)
T ss_pred hHhhhhccccc---CceeccchhHHHHHhccCc-hhHHHhhhhhhcCCcccCcCHHHHHHHHH
Confidence 44556666553 6777766666655443333 44568999999999999999999976543
No 208
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=30.59 E-value=2.3e+02 Score=21.21 Aligned_cols=90 Identities=10% Similarity=0.029 Sum_probs=54.6
Q ss_pred cccchhhhhhhcccCccccCCCCCCCcHHHHHhhcCCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCCCHH
Q 030405 6 DGLKHFCVVVVNCCDADLYKQPRGLEDPEALARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESL 85 (178)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~ 85 (178)
.|+-..|..||..+ +|.......+.++....++.+++++.--........ | .+..++..++...+.....
T Consensus 49 lG~vt~fd~fm~GY----~p~~~~~~If~Alc~a~~~dp~~~r~dA~~l~~~a~-----~-~s~~~l~~~l~~~~~~~~~ 118 (216)
T PF11264_consen 49 LGLVTVFDRFMQGY----PPEEDKDSIFNALCQALGFDPEQYRQDAEKLEEWAK-----G-KSIEDLLSWLSQKGGEGDN 118 (216)
T ss_pred hhHHHHHHHHhcCC----CChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-----c-CCHHHHHHHHhccccccch
Confidence 36667777788744 333334467788888899999998887777776643 2 4668888888654322233
Q ss_pred HHHHHHHHHhcCCCCcccHHHH
Q 030405 86 FADRVFDLFDTKHNGILDFEEF 107 (178)
Q Consensus 86 ~~~~lf~~~d~~~~g~i~~~ef 107 (178)
.+...+.....+ +..-|.-|
T Consensus 119 ~l~~~~~~ia~~--~~f~YSRl 138 (216)
T PF11264_consen 119 PLAAILQAIASN--PKFKYSRL 138 (216)
T ss_pred HHHHHHHHHhcC--CCCchHHH
Confidence 334444444333 33445544
No 209
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=30.48 E-value=1.4e+02 Score=18.74 Aligned_cols=61 Identities=21% Similarity=0.200 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q 030405 87 ADRVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVV 149 (178)
Q Consensus 87 ~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~ 149 (178)
++...+..-.+ +-.|.|.+|...+..... .....+...+=..+|.-.+|+|+.=||.-+.+
T Consensus 9 A~~FW~~~Fg~-r~IVPW~~F~~~L~~~h~-~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 9 AAEFWKTSFGK-RTIVPWSEFRQALQKVHP-ISSGLEAMALKSTIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp HHHHHHHHHTT--SEEEHHHHHHHHHHHS---SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCC-CeEeeHHHHHHHHHHhcC-CCchHHHHHHHHHHhcccCCccchhhhHHHHH
Confidence 34444444333 346888888888887765 34444444555567888888888888876654
No 210
>PF04687 Microvir_H: Microvirus H protein (pilot protein); InterPro: IPR006777 Bacteriophage PhiX174 is one of the simplest viruses, having a single-stranded, closed circular DNA of 5386 nucleotide bases and four capsid proteins, J, F, G and H. A single molecule of H protein is found on each of the 12 spikes on the microvirus shell of the bacteriophage. H is involved in the ejection of the phage DNA, and at least one copy is injected into the hosts periplasmic space along with the ssDNA viral genome []. Part of H is thought to lie outside the shell, where it recognises lipopolysaccharide from virus-sensitive bacterial strains []. Part of H may lie within the capsid, since mutations in H can influence the DNA ejection mechanism by affecting the DNA-protein interactions []. H may span the capsid through the hydrophilic channels formed by G proteins [].; GO: 0016032 viral reproduction, 0019028 viral capsid
Probab=30.21 E-value=75 Score=23.98 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=22.5
Q ss_pred hhcCCCCCHHHHHHHHHHHHhhccCC
Q 030405 153 TESGMNLSDDVIESIIDKVLSLIQLI 178 (178)
Q Consensus 153 ~~~~~~l~~~~~~~~~~~~~~~~D~~ 178 (178)
+..|.+++..++.++-+++-.++|+|
T Consensus 220 q~~gq~~tn~qi~~l~rkv~aei~~v 245 (310)
T PF04687_consen 220 QTAGQHFTNDQIMELTRKVYAEIDKV 245 (310)
T ss_pred HHhhccccHHHHHHHHHHHHhhHHHH
Confidence 45678999999999999999998875
No 211
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=30.10 E-value=1.1e+02 Score=17.11 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=12.0
Q ss_pred CCceeHHHHHHHHHHHHhhcCCCCCH
Q 030405 136 QGFIERQEVKQMVVATLTESGMNLSD 161 (178)
Q Consensus 136 ~G~I~~~e~~~~l~~~~~~~~~~l~~ 161 (178)
=..+|...++..|..- .|..+++
T Consensus 18 l~~vT~k~vr~~Le~~---~~~dL~~ 40 (54)
T PF08766_consen 18 LDTVTKKQVREQLEER---FGVDLSS 40 (54)
T ss_dssp GGG--HHHHHHHHHHH----SS--SH
T ss_pred HhHhhHHHHHHHHHHH---HCCCcHH
Confidence 3467888888887654 2666664
No 212
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=30.00 E-value=1.3e+02 Score=17.99 Aligned_cols=49 Identities=14% Similarity=0.225 Sum_probs=29.4
Q ss_pred hhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 030405 120 IDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKVL 172 (178)
Q Consensus 120 ~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 172 (178)
.++.+..+|+.-|. .++.+|+..+|++=-+....+.+++.+..++..+.
T Consensus 15 ~d~~m~~if~l~~~----~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~GLi 63 (68)
T PF07308_consen 15 KDDDMIEIFALAGF----EVSKAELSAWLRKEDEKGYKECSDQLLRNFLNGLI 63 (68)
T ss_pred ChHHHHHHHHHcCC----ccCHHHHHHHHCCCCCccccccChHHHHHHHHHHH
Confidence 34567777777765 47888888887652111113566666666665543
No 213
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.98 E-value=1.3e+02 Score=18.14 Aligned_cols=44 Identities=11% Similarity=0.199 Sum_probs=31.7
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 030405 125 EFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKVLS 173 (178)
Q Consensus 125 ~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 173 (178)
++.+..+=+ ++-.|+.+-++.++..+ |...|+..+.++...+-.
T Consensus 26 rk~~~k~lk-~NPpine~~iR~M~~qm----GqKpSe~kI~Qvm~~i~k 69 (71)
T COG3763 26 RKQMKKQLK-DNPPINEEMIRMMMAQM----GQKPSEKKINQVMRSIIK 69 (71)
T ss_pred HHHHHHHHh-hCCCCCHHHHHHHHHHh----CCCchHHHHHHHHHHHHh
Confidence 344444422 35578988888887776 999999999998887754
No 214
>PLN02223 phosphoinositide phospholipase C
Probab=29.93 E-value=2.4e+02 Score=24.31 Aligned_cols=51 Identities=14% Similarity=-0.049 Sum_probs=23.5
Q ss_pred hHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHH
Q 030405 121 DDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESG-MNLSDDVIESIIDKVL 172 (178)
Q Consensus 121 ~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~-~~l~~~~~~~~~~~~~ 172 (178)
.+.++.+|..| .++.|..+.+.+.++|.=+...-| ...+.++.+.+++.++
T Consensus 15 p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~ 66 (537)
T PLN02223 15 PDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELK 66 (537)
T ss_pred cHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence 34455555555 244555555555555532222122 2344445555555443
No 215
>PF12207 DUF3600: Domain of unknown function (DUF3600); InterPro: IPR022019 This family of proteins is found in bacteria. Proteins in this family are approximately 230 amino acids in length. This domain is the C-terminal of the putative ecf-type sigma factor negative effector. ; PDB: 3FGG_A 3FH3_A.
Probab=28.91 E-value=30 Score=24.16 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=30.5
Q ss_pred cCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCC--CceeHHHHHHHHHHHHhh
Q 030405 96 TKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQ--GFIERQEVKQMVVATLTE 154 (178)
Q Consensus 96 ~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~--G~I~~~e~~~~l~~~~~~ 154 (178)
.|.+|.|+|+.+...-..-.+ ....++.-.|+.+...++ ..++.+|+.+.+.+++.+
T Consensus 63 gD~NGnidye~ls~~eqee~k--~~~~eLqPYFdKLN~~~SsK~vlt~~E~d~y~eALm~~ 121 (162)
T PF12207_consen 63 GDKNGNIDYEKLSKEEQEEYK--KLTMELQPYFDKLNGHKSSKEVLTQEEYDQYIEALMTY 121 (162)
T ss_dssp B-TTS-B-GGGS-HHHHHHHH--HHHHHHHHHHHHHTT---HHHHS-HHHHHHHHHHHHHH
T ss_pred cccCCCcCHHhCCHHHHHHHH--HHHHhcchHHHHhcCCcchhhhcCHHHHHHHHHHHhhh
Confidence 355677888876543221111 112346677888755433 368899999999988663
No 216
>PRK00199 ihfB integration host factor subunit beta; Reviewed
Probab=28.39 E-value=1.6e+02 Score=18.48 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=10.3
Q ss_pred CCCHHHHHHHHHHHHhh
Q 030405 158 NLSDDVIESIIDKVLSL 174 (178)
Q Consensus 158 ~l~~~~~~~~~~~~~~~ 174 (178)
.++..++..+++.++..
T Consensus 16 ~~s~~~~~~vv~~~~~~ 32 (94)
T PRK00199 16 HLSAKDVENAVKEILEE 32 (94)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 46666666666665543
No 217
>KOG4149 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.29 E-value=99 Score=20.94 Aligned_cols=53 Identities=13% Similarity=0.246 Sum_probs=36.8
Q ss_pred CCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhh---CCCCCCceeHHHHHHHHHHHH
Q 030405 97 KHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLY---DLKQQGFIERQEVKQMVVATL 152 (178)
Q Consensus 97 ~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~---D~d~~G~I~~~e~~~~l~~~~ 152 (178)
+.||.|+|+ ...+..+.. +.-.+..+.||.=| |..-.|.=+.++|+.+...+.
T Consensus 50 ~PDG~INwd--CpClg~m~a-~pCG~eFreA~sCf~~s~~e~kg~dC~~qf~a~~~C~q 105 (129)
T KOG4149|consen 50 NPDGTINWD--CPCLGGLVA-GPCGEEFREAFSCFKYSDTEPKGGDCVKQFVAMQECMQ 105 (129)
T ss_pred CCCCceeec--Ccccccccc-CccHHHHHHHHhhccccCCCcCccchHHHHHHHHHHHH
Confidence 457999998 444444444 45567888888766 445566778888988877764
No 218
>PF06952 PsiA: PsiA protein; InterPro: IPR009713 This family consists of several Enterobacterial PsiA proteins. The function of PsiA is unknown although it is thought that it may affect the generation of an SOS signal in Escherichia coli [].
Probab=28.16 E-value=82 Score=23.85 Aligned_cols=20 Identities=15% Similarity=0.398 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhcCCCCcccHHH
Q 030405 85 LFADRVFDLFDTKHNGILDFEE 106 (178)
Q Consensus 85 ~~~~~lf~~~d~~~~g~i~~~e 106 (178)
+.+...|+.+ +++|.|+-..
T Consensus 39 Pya~aFfR~L--~G~~rI~~~d 58 (238)
T PF06952_consen 39 PYARAFFRVL--NGSGRISSKD 58 (238)
T ss_pred hhHHHHHHHh--cCCCccchhh
Confidence 4455555555 4455555444
No 219
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=27.74 E-value=1.1e+02 Score=22.14 Aligned_cols=34 Identities=9% Similarity=0.417 Sum_probs=18.7
Q ss_pred CCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 030405 133 LKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDK 170 (178)
Q Consensus 133 ~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~ 170 (178)
.|.+|++..+|+.+.+..- +..++.+++.++++.
T Consensus 27 ~d~~G~v~v~dLL~~~~~~----~~~~t~~~i~~vV~~ 60 (186)
T PF01885_consen 27 MDPDGWVSVDDLLRALRFK----GLWVTEEDIREVVET 60 (186)
T ss_dssp --TT--EEHHHHHHHHHHT-----TT--HHHHHHHHHH
T ss_pred cCCCCCEeHHHHHHHHHHc----CCCCCHHHHHHHHhh
Confidence 5778888888887766442 445777777777654
No 220
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=27.60 E-value=1.4e+02 Score=19.69 Aligned_cols=27 Identities=11% Similarity=0.167 Sum_probs=12.5
Q ss_pred hhHHHHHHHHhhCCCCCCceeHHHHHHHHHH
Q 030405 120 IDDKIEFSFQLYDLKQQGFIERQEVKQMVVA 150 (178)
Q Consensus 120 ~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~ 150 (178)
+.++++.+|-.. ++.++.+++..+|.-
T Consensus 80 ~~dElrai~~~~----~~~~~~e~l~~ILd~ 106 (112)
T PRK14981 80 TRDELRAIFAKE----RYTLSPEELDEILDI 106 (112)
T ss_pred CHHHHHHHHHHh----ccCCCHHHHHHHHHH
Confidence 344455555444 223455555555543
No 221
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=27.53 E-value=68 Score=23.72 Aligned_cols=28 Identities=11% Similarity=0.267 Sum_probs=22.5
Q ss_pred HHHHhhCCCCCCceeHHHHHHHHHHHHh
Q 030405 126 FSFQLYDLKQQGFIERQEVKQMVVATLT 153 (178)
Q Consensus 126 ~~F~~~D~d~~G~I~~~e~~~~l~~~~~ 153 (178)
.+..-+|.|++|.++.+|+..+.+.++.
T Consensus 54 ~ll~~~D~~~dg~~~~~el~~l~~~~~~ 81 (212)
T PF06226_consen 54 YLLEGLDKDGDGKLDPEELAALAKEIFD 81 (212)
T ss_pred HHHHhhhhcccCCCCHHHHHHHHHHHHh
Confidence 3455688999999999999998877654
No 222
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=26.78 E-value=1.4e+02 Score=17.36 Aligned_cols=51 Identities=8% Similarity=0.085 Sum_probs=27.9
Q ss_pred ChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhc
Q 030405 119 PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKVLSLI 175 (178)
Q Consensus 119 ~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 175 (178)
.+.++++.+|+.+- +|.++..++-.+|..+. . ...+.+|+--+++-+.+.+
T Consensus 15 Ls~~e~~~~~~~i~---~g~~s~~qiaAfL~al~-~--kget~~Eiag~~~am~~~a 65 (66)
T PF02885_consen 15 LSREEAKAAFDAIL---DGEVSDAQIAAFLMALR-M--KGETPEEIAGFAKAMREHA 65 (66)
T ss_dssp --HHHHHHHHHHHH---TTSS-HHHHHHHHHHHH-H--H---HHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHH---cCCCCHHHHHHHHHHHH-H--hCcCHHHHHHHHHHHHHhc
Confidence 34456666666663 45677777777776652 1 1366777776666665543
No 223
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=26.75 E-value=1.7e+02 Score=18.39 Aligned_cols=48 Identities=13% Similarity=0.075 Sum_probs=25.6
Q ss_pred CCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHH
Q 030405 99 NGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATL 152 (178)
Q Consensus 99 ~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~ 152 (178)
+|.|+=+++-.+... .++.+++|+++... ...|.-..+=|.++|..++
T Consensus 27 n~~it~E~y~~V~a~----~T~qdkmRkLld~v--~akG~~~k~~F~~iL~e~~ 74 (85)
T cd08324 27 NDYFSTEDAEIVCAC----PTQPDKVRKILDLV--QSKGEEVSEYFLYLLQQLA 74 (85)
T ss_pred cCCccHHHHHHHHhC----CCCHHHHHHHHHHH--HhcCchHHHHHHHHHHHHH
Confidence 345666665444432 34456666666663 3345555555666665543
No 224
>PHA02105 hypothetical protein
Probab=26.07 E-value=1.3e+02 Score=17.33 Aligned_cols=49 Identities=20% Similarity=0.372 Sum_probs=27.8
Q ss_pred cccHHHHHHHHhcCC----CCCHHHHHHHHHHHhcCCC--CcccHHHHHHHHHhh
Q 030405 66 LINKEEFQLALFKTN----KKESLFADRVFDLFDTKHN--GILDFEEFARALSIF 114 (178)
Q Consensus 66 ~i~~~ef~~~l~~~~----~~~~~~~~~lf~~~d~~~~--g~i~~~ef~~~~~~~ 114 (178)
++++++|..++.... +...+....+-..|..-+- -.++|+||-.++-.+
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p~i 58 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMPFI 58 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhccccccc
Confidence 477888888875522 2223334444444444322 357888887776543
No 225
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=25.75 E-value=1.3e+02 Score=17.56 Aligned_cols=13 Identities=8% Similarity=0.371 Sum_probs=7.9
Q ss_pred eeHHHHHHHHHHH
Q 030405 139 IERQEVKQMVVAT 151 (178)
Q Consensus 139 I~~~e~~~~l~~~ 151 (178)
++.+++..+|.++
T Consensus 19 i~~~ei~~~L~~l 31 (71)
T smart00874 19 LSAEEIEEILKRL 31 (71)
T ss_pred CCHHHHHHHHHHC
Confidence 5666666666555
No 226
>COG4860 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.32 E-value=1.7e+02 Score=20.42 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=20.3
Q ss_pred ceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhh
Q 030405 138 FIERQEVKQMVVATLTESGMNLSDDVIESIIDKVLSL 174 (178)
Q Consensus 138 ~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 174 (178)
.++.+|+.+++... .++.+++++..+++-+.
T Consensus 93 ~~Sl~dL~dii~~~------f~sdeev~ey~~ei~~l 123 (170)
T COG4860 93 MGSLSDLADIIYAA------FLSDEEVKEYEDEIKAL 123 (170)
T ss_pred EEeHHHHHHHHHHH------hCCHHHHHHHHHHHHHH
Confidence 46777777777554 46677777776666543
No 227
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=25.15 E-value=5.5e+02 Score=23.99 Aligned_cols=65 Identities=12% Similarity=0.177 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCC---------CChhHHHHHHHHhhCCC----CCCceeHHHHHHHH
Q 030405 84 SLFADRVFDLFDTKHNGILDFEEFARALSIFHPN---------SPIDDKIEFSFQLYDLK----QQGFIERQEVKQMV 148 (178)
Q Consensus 84 ~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~~---------~~~~e~~~~~F~~~D~d----~~G~I~~~e~~~~l 148 (178)
...++.||..+..+....+|.++|..++..-++. ......++.+.+.|..| .+|.++.+-|.+.+
T Consensus 220 R~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl 297 (1189)
T KOG1265|consen 220 RPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYL 297 (1189)
T ss_pred chhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHh
Confidence 3457999999999988999999999988643321 12335677788888555 47899999888887
No 228
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=25.01 E-value=1.7e+02 Score=17.72 Aligned_cols=53 Identities=9% Similarity=0.152 Sum_probs=33.1
Q ss_pred HHHHhhCCCCChhHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 030405 109 RALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIID 169 (178)
Q Consensus 109 ~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~ 169 (178)
.++.++.. +...+.++.-|...= +.|+..|+..+=+.++. ..++.++++.+++
T Consensus 4 ~ii~~Lh~-G~~~e~vk~~F~~~~----~~Vs~~EI~~~Eq~Li~---eG~~~eeiq~LCd 56 (71)
T PF04282_consen 4 EIIKRLHE-GEDPEEVKEEFKKLF----SDVSASEISAAEQELIQ---EGMPVEEIQKLCD 56 (71)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHH----CCCCHHHHHHHHHHHHH---cCCCHHHHHHHhH
Confidence 34445555 455666776666542 23788888888777765 3477777776654
No 229
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=23.43 E-value=1.4e+02 Score=16.34 Aligned_cols=45 Identities=22% Similarity=0.228 Sum_probs=26.0
Q ss_pred cCCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCCCHHHHHHHHH
Q 030405 40 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFD 92 (178)
Q Consensus 40 ~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~ 92 (178)
..++..++..|...|.. +.+.+..+...+-...+... ..+..+|.
T Consensus 5 ~~~t~~q~~~L~~~f~~-------~~~p~~~~~~~la~~l~l~~-~~V~~WF~ 49 (57)
T PF00046_consen 5 TRFTKEQLKVLEEYFQE-------NPYPSKEEREELAKELGLTE-RQVKNWFQ 49 (57)
T ss_dssp SSSSHHHHHHHHHHHHH-------SSSCHHHHHHHHHHHHTSSH-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-------hccccccccccccccccccc-cccccCHH
Confidence 45788889999999984 34555555544433333332 23444443
No 230
>TIGR01201 HU_rel DNA-binding protein, histone-like, putative. This model describes a set of proteins related to but longer than DNA-binding protein HU. Its distinctive domain architecture compared to HU and related histone-like DNA-binding proteins justifies the designation as superfamily. Members include, so far, one from Bacteroides fragilis, a gut bacterium, and ten from Porphyromonas gingivalis, an oral anaerobe.
Probab=23.39 E-value=1.9e+02 Score=20.01 Aligned_cols=34 Identities=24% Similarity=0.479 Sum_probs=23.0
Q ss_pred CCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhh
Q 030405 136 QGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKVLSL 174 (178)
Q Consensus 136 ~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 174 (178)
.|.++.+||...+..- ..++..++..+++.++..
T Consensus 28 ~~~mt~~el~~~Ia~~-----s~~s~~dv~~vl~~l~~~ 61 (145)
T TIGR01201 28 SGVIDFEEIAELIAEE-----SSLSPGDVKGIIDRLAYV 61 (145)
T ss_pred CCCcCHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHH
Confidence 4568888877777543 257777777777766654
No 231
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=23.33 E-value=1.7e+02 Score=17.13 Aligned_cols=16 Identities=13% Similarity=0.283 Sum_probs=9.4
Q ss_pred CCCCHHHHHHHHHHHH
Q 030405 157 MNLSDDVIESIIDKVL 172 (178)
Q Consensus 157 ~~l~~~~~~~~~~~~~ 172 (178)
++|+..|+..+++.+.
T Consensus 51 ~PL~~~Ev~~i~kSi~ 66 (71)
T PF08708_consen 51 PPLPESEVKAIAKSIA 66 (71)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4566666666655554
No 232
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=23.31 E-value=2e+02 Score=17.98 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=15.8
Q ss_pred eeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 030405 139 IERQEVKQMVVATLTESGMNLSDDVIESIIDKV 171 (178)
Q Consensus 139 I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 171 (178)
|+.+++..+..-. ...+++++++.+..++
T Consensus 1 i~~~~v~~lA~La----~L~l~eee~~~~~~~l 29 (93)
T TIGR00135 1 ISDEEVKHLAKLA----RLELSEEEAESFAGDL 29 (93)
T ss_pred CCHHHHHHHHHHh----CCCCCHHHHHHHHHHH
Confidence 3455555543322 4567777776655443
No 233
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.62 E-value=2.9e+02 Score=24.40 Aligned_cols=79 Identities=16% Similarity=0.287 Sum_probs=51.7
Q ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCcccHHHHHHHHHhhCC-------CCChhHHHHHHHHhhCCCCCCce
Q 030405 67 INKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSIFHP-------NSPIDDKIEFSFQLYDLKQQGFI 139 (178)
Q Consensus 67 i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~~~~~~~~-------~~~~~e~~~~~F~~~D~d~~G~I 139 (178)
++.+++. ...-..++..+.+|...|. .+|.++-+++..+...... .....+....+++..|.++.|++
T Consensus 4 ~~~~~~~----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 78 (646)
T KOG0039|consen 4 ISFQELK----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYI 78 (646)
T ss_pred cchhhhc----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccccccee
Confidence 6777776 1122234456778888887 6788888777665442211 01233445668888899999999
Q ss_pred eHHHHHHHHHH
Q 030405 140 ERQEVKQMVVA 150 (178)
Q Consensus 140 ~~~e~~~~l~~ 150 (178)
..+++..++..
T Consensus 79 ~~~~~~~ll~~ 89 (646)
T KOG0039|consen 79 TNEDLEILLLQ 89 (646)
T ss_pred eecchhHHHHh
Confidence 99988888753
No 234
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=22.34 E-value=3.3e+02 Score=20.15 Aligned_cols=41 Identities=17% Similarity=0.085 Sum_probs=22.3
Q ss_pred CCcccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCcccHHHHHH
Q 030405 64 DGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFAR 109 (178)
Q Consensus 64 ~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~~d~~~~g~i~~~ef~~ 109 (178)
+|.||.++....+.......+. . ++.+.--++.+++.+...
T Consensus 11 DGTITl~Ds~~~itdtf~~~e~--k---~l~~~vls~tiS~rd~~g 51 (220)
T COG4359 11 DGTITLNDSNDYITDTFGPGEW--K---ALKDGVLSKTISFRDGFG 51 (220)
T ss_pred CCceEecchhHHHHhccCchHH--H---HHHHHHhhCceeHHHHHH
Confidence 5777777777666443333332 2 333333455677766544
No 235
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=22.34 E-value=2.3e+02 Score=22.64 Aligned_cols=38 Identities=8% Similarity=0.174 Sum_probs=20.1
Q ss_pred hHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 030405 121 DDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESII 168 (178)
Q Consensus 121 ~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~ 168 (178)
++++-...+.+ +|....+++..++..+ .+|++|+..++
T Consensus 305 Reeal~~v~~~----d~~~~~~~~~~~~~~l------g~t~~ef~~~~ 342 (343)
T TIGR03573 305 REEAIELVKEY----DGEFPKEDLEYFLKYL------GISEEEFWKTV 342 (343)
T ss_pred HHHHHHHHHHh----cccccHHHHHHHHHHh------CCCHHHHHHHh
Confidence 34444444443 3334455555555554 57777776654
No 236
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.30 E-value=1.8e+02 Score=25.21 Aligned_cols=45 Identities=9% Similarity=0.225 Sum_probs=26.0
Q ss_pred HhcCCCCcccHHHHHHHHHhhCCCCChhHHHHHHHHhhCCCCCCce
Q 030405 94 FDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFI 139 (178)
Q Consensus 94 ~d~~~~g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~~~D~d~~G~I 139 (178)
....+|+..++++|+..+-.... +.....+.....+..++.+|.+
T Consensus 364 ~p~~~D~dFs~~~f~~rvN~dL~-n~lgNl~~R~~~fi~k~~~g~v 408 (558)
T COG0143 364 LPEGSDGDFSWEDFVERVNADLA-NKLGNLANRTLGFINKYFDGVV 408 (558)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCCcC
Confidence 34456777888888776554333 2333445555555555556655
No 237
>cd07925 LigA_like_1 The A subunit of Uncharacterized proteins with similarity to Protocatechuate 4,5-dioxygenase (LigAB). The proteins of unknown function in this subfamily are similar to the A subunit of the Protocatechuate (PCA) 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds.
Probab=22.06 E-value=67 Score=21.11 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=24.7
Q ss_pred ccchhhhhhhcccCccccCCCCCCCcHHHHHhhcCCCHHHHHHHH
Q 030405 7 GLKHFCVVVVNCCDADLYKQPRGLEDPEALARETVFSVSEIEALY 51 (178)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 51 (178)
.|..+|.+++...+-..=. .+-..+...-++|++|.+.+.
T Consensus 15 ~LN~fc~sl~~~~nRe~F~-----aD~~Ay~~~~~Lteeqr~av~ 54 (106)
T cd07925 15 ALNKMCFSFNDAANREAFL-----ADEEAYCEKFGLTPEQKQAVR 54 (106)
T ss_pred HHHHHHHHHCCHHHHHHHH-----hCHHHHHHHcCCCHHHHHHHH
Confidence 3567777777754444333 455666777777777765554
No 238
>cd07921 PCA_45_Doxase_A_like Subunit A of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and similar enzymes. This subfamily includes the A subunit of protocatechuate (PCA) 4,5-dioxygenase (LigAB) and two subfamilies of unknown function. The A subunit is the smaller, non-catalytic subunit of LigAB. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds. PCA 4,5-dioxygenase is one of the aromatic ring opening dioxygenases which play key roles in the degradation of aromatic compounds. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit.
Probab=21.72 E-value=49 Score=21.76 Aligned_cols=39 Identities=18% Similarity=0.359 Sum_probs=22.3
Q ss_pred cchhhhhhhcccCccccCCCCCCCcHHHHHhhcCCCHHHHHHHH
Q 030405 8 LKHFCVVVVNCCDADLYKQPRGLEDPEALARETVFSVSEIEALY 51 (178)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 51 (178)
|..+|.+++...+-..=. .+...+.+..++|++|.+.+.
T Consensus 16 LN~f~~sL~~a~~Re~F~-----aD~eAy~~~~gLTeEe~~AV~ 54 (106)
T cd07921 16 LNKMCMSLNKAENREAFK-----ADEEAYCDKFGLTEEQKQAVL 54 (106)
T ss_pred HHHHHHHHCCHHHHHHHH-----hCHHHHHHHcCCCHHHHHHHH
Confidence 556676665433332222 455666677777777765554
No 239
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=21.69 E-value=2.5e+02 Score=18.61 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=21.7
Q ss_pred hhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 030405 130 LYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIID 169 (178)
Q Consensus 130 ~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~ 169 (178)
+.-.-++..+|.+++..+|.+. |.++...-+..+++
T Consensus 9 l~~l~g~~~pta~dI~~IL~Aa----Gvevd~~~~~~f~~ 44 (113)
T PLN00138 9 LAVLGGNTCPSAEDLKDILGSV----GADADDDRIELLLS 44 (113)
T ss_pred HHHhcCCCCCCHHHHHHHHHHc----CCcccHHHHHHHHH
Confidence 3333455567788888777665 66666655554443
No 240
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=21.68 E-value=2.3e+02 Score=20.65 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=28.9
Q ss_pred cCCCHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHhcCCCCCHHHHHHHHHH
Q 030405 40 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDL 93 (178)
Q Consensus 40 ~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~ 93 (178)
+.|+.+++..|-..|. +++++--.+=..+-...++..+ .++-+|+.
T Consensus 107 T~ft~~Ql~~LE~~F~-------~~~Yvvg~eR~~LA~~L~Lset-QVkvWFQN 152 (197)
T KOG0843|consen 107 TAFTPEQLLKLEHAFE-------GNQYVVGAERKQLAQSLSLSET-QVKVWFQN 152 (197)
T ss_pred cccCHHHHHHHHHHHh-------cCCeeechHHHHHHHHcCCChh-Hhhhhhhh
Confidence 4589999999999997 5677665554444344344433 24555543
No 241
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=21.51 E-value=2.5e+02 Score=18.37 Aligned_cols=28 Identities=11% Similarity=0.426 Sum_probs=21.3
Q ss_pred eeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 030405 139 IERQEVKQMVVATLTESGMNLSDDVIESIIDK 170 (178)
Q Consensus 139 I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~ 170 (178)
+|.+++..+|... |.++++..+..+++.
T Consensus 17 ~ta~~I~~IL~aa----GveVe~~~~~~~~~a 44 (105)
T cd04411 17 LTEDKIKELLSAA----GAEIEPERVKLFLSA 44 (105)
T ss_pred CCHHHHHHHHHHc----CCCcCHHHHHHHHHH
Confidence 8889888888775 777777776666654
No 242
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=21.51 E-value=1.6e+02 Score=16.45 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=14.3
Q ss_pred CCCcccHHHHHHHHhcCCCCCHHHHHHHHHH
Q 030405 63 DDGLINKEEFQLALFKTNKKESLFADRVFDL 93 (178)
Q Consensus 63 ~~g~i~~~ef~~~l~~~~~~~~~~~~~lf~~ 93 (178)
+++.++.+|+...+..........++++++.
T Consensus 19 g~~~ls~~eia~~l~~~~p~~~~~L~RimR~ 49 (51)
T PF08100_consen 19 GGGPLSLSEIAARLPTSNPSAPPMLDRIMRL 49 (51)
T ss_dssp TTS-BEHHHHHHTSTCT-TTHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 4467777777665542222222344555443
No 243
>PF11300 DUF3102: Protein of unknown function (DUF3102); InterPro: IPR021451 This entry is represented by Streptococcus phage 7201, Orf2. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.45 E-value=2.8e+02 Score=18.97 Aligned_cols=75 Identities=17% Similarity=0.146 Sum_probs=38.1
Q ss_pred cccHHHHHHHHhcCCCCCHHHHHHH---HHHHhcCCC-------------CcccHHHHHHHHHhhCCCCChhHHHHHHHH
Q 030405 66 LINKEEFQLALFKTNKKESLFADRV---FDLFDTKHN-------------GILDFEEFARALSIFHPNSPIDDKIEFSFQ 129 (178)
Q Consensus 66 ~i~~~ef~~~l~~~~~~~~~~~~~l---f~~~d~~~~-------------g~i~~~ef~~~~~~~~~~~~~~e~~~~~F~ 129 (178)
.+...+|..++...-.-....+.++ +..|..+.. ..++|.+-+..+ +.++++-.....
T Consensus 38 ~l~HGef~~Wle~~~~~s~rtA~~~M~va~~yg~~~~~~~~~~~~~~~~l~~L~~tqal~Ll------~lpeeeR~~fi~ 111 (130)
T PF11300_consen 38 LLPHGEFGKWLEEEVGYSQRTAQRFMQVAEEYGSNQSSSSDSDSSNSSALPNLSYTQALILL------GLPEEEREEFIE 111 (130)
T ss_pred hCCHHHHHHHHHHHcCcCHHHHHHHHHHHHHhCcccccCcccccccchHHHhhhHHHHHHHH------cCCchHHHHHHH
Confidence 4777789999875332333334444 444433210 124444444433 233443334444
Q ss_pred hhCCCCCCceeHHHHHHHHH
Q 030405 130 LYDLKQQGFIERQEVKQMVV 149 (178)
Q Consensus 130 ~~D~d~~G~I~~~e~~~~l~ 149 (178)
.-|.+ .+|..|+++.++
T Consensus 112 ~~dv~---~Mt~REL~~avk 128 (130)
T PF11300_consen 112 ENDVE---RMTVRELQQAVK 128 (130)
T ss_pred Hhhhc---cccHHHHHHHHh
Confidence 44543 388888887763
No 244
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=21.22 E-value=2.5e+02 Score=21.81 Aligned_cols=27 Identities=15% Similarity=0.398 Sum_probs=20.6
Q ss_pred HhhcCCCHHHHHHHHHHHHhhcccCCCCCcccHH
Q 030405 37 ARETVFSVSEIEALYELFKKISSAVIDDGLINKE 70 (178)
Q Consensus 37 ~~~~~~~~~~i~~l~~~F~~~d~~~~~~g~i~~~ 70 (178)
..-+.|+.+++++|+..|+. +-+|+..
T Consensus 248 RPRTAFtaeQL~RLK~EF~e-------nRYlTEq 274 (342)
T KOG0493|consen 248 RPRTAFTAEQLQRLKAEFQE-------NRYLTEQ 274 (342)
T ss_pred CccccccHHHHHHHHHHHhh-------hhhHHHH
Confidence 34468999999999999984 4567644
No 245
>COG5296 Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]
Probab=21.08 E-value=4.7e+02 Score=21.75 Aligned_cols=51 Identities=14% Similarity=0.192 Sum_probs=30.9
Q ss_pred hHHHHHHHHhhCCCCCCceeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 030405 121 DDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKV 171 (178)
Q Consensus 121 ~e~~~~~F~~~D~d~~G~I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 171 (178)
+++.+.+++.|+.+.=..-+..-+..-+..+....|.+||+.++.+++..=
T Consensus 303 ~~eyQr~~r~~~~~kl~~PS~~~v~~k~~~l~d~~~~~LSdkeis~~V~~k 353 (521)
T COG5296 303 REEYQRVWRSFKVGKLSMPSIAKVKEKYDKLVDTMGRRLSDKEISKMVACK 353 (521)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhCCcCchhHHHHHHHHH
Confidence 355666777776554333344444444444444458899999998887653
No 246
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=21.06 E-value=2.7e+02 Score=18.75 Aligned_cols=28 Identities=18% Similarity=0.432 Sum_probs=21.4
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHhh
Q 030405 87 ADRVFDLFDTKHNGILDFEEFARALSIF 114 (178)
Q Consensus 87 ~~~lf~~~d~~~~g~i~~~ef~~~~~~~ 114 (178)
+..+++.+|.+++|.|..-.|..++..+
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 5779999999999999999998887654
No 247
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=20.77 E-value=2.3e+02 Score=17.66 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=10.1
Q ss_pred CCCHHHHHHHHHHHHhh
Q 030405 158 NLSDDVIESIIDKVLSL 174 (178)
Q Consensus 158 ~l~~~~~~~~~~~~~~~ 174 (178)
.++..++..+++.++..
T Consensus 16 ~~s~~~v~~vv~~~~~~ 32 (94)
T TIGR00988 16 HLPAKDVEDAVKTMLEH 32 (94)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 45666666666665543
No 248
>PRK13696 hypothetical protein; Provisional
Probab=20.76 E-value=2e+02 Score=16.95 Aligned_cols=11 Identities=27% Similarity=0.422 Sum_probs=5.9
Q ss_pred CCHHHHHHHHH
Q 030405 159 LSDDVIESIID 169 (178)
Q Consensus 159 l~~~~~~~~~~ 169 (178)
+++++++++.+
T Consensus 50 l~dee~~e~~~ 60 (62)
T PRK13696 50 LSEEEAEELKK 60 (62)
T ss_pred CCHHHHHHHHh
Confidence 55666555443
No 249
>PRK13704 plasmid SOS inhibition protein A; Provisional
Probab=20.50 E-value=1.5e+02 Score=22.51 Aligned_cols=23 Identities=9% Similarity=0.229 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhcCCCCcccHHHHHH
Q 030405 85 LFADRVFDLFDTKHNGILDFEEFAR 109 (178)
Q Consensus 85 ~~~~~lf~~~d~~~~g~i~~~ef~~ 109 (178)
+.++..|+.+ +++|.|+..+...
T Consensus 39 PYa~aFfr~L--tGs~rI~~~dvr~ 61 (240)
T PRK13704 39 PYAKAFFRCL--NGSRRISLSDLRF 61 (240)
T ss_pred hHHHHHHHHh--cCCCcccHHHHHH
Confidence 4455566665 3455565555443
No 250
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=20.12 E-value=2.4e+02 Score=17.64 Aligned_cols=29 Identities=28% Similarity=0.516 Sum_probs=17.9
Q ss_pred eeHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 030405 139 IERQEVKQMVVATLTESGMNLSDDVIESIIDKV 171 (178)
Q Consensus 139 I~~~e~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 171 (178)
|+.+++..+..-. ...+++++++.+...+
T Consensus 3 i~~e~i~~la~La----~l~l~~ee~~~~~~~l 31 (95)
T PRK00034 3 ITREEVKHLAKLA----RLELSEEELEKFAGQL 31 (95)
T ss_pred CCHHHHHHHHHHh----CCCCCHHHHHHHHHHH
Confidence 6667777665433 5677777766655443
Done!