BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030407
(178 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HF9|A Chain A, Crystal Structure Of Hypb From Methanocaldococcus
Jannaschii In The Triphosphate Form
pdb|2HF9|B Chain B, Crystal Structure Of Hypb From Methanocaldococcus
Jannaschii In The Triphosphate Form
Length = 226
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 78/144 (54%), Gaps = 13/144 (9%)
Query: 8 LRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEE 67
L+DKY +A + D+ K D E + ++GA ++ + TG H D + LE+
Sbjct: 62 LKDKYKIACIAGDVIAKFDAERMEKHGA----KVVPLNTGKECHL----DAHLVGHALED 113
Query: 68 LSNLFKADLLLCESGGDNLA-ANFSRELADYIIYIIDVSGGDKIPRKGGPGITQ-ADLLV 125
L NL + DLL E+ G+ + A+F I+ I G D I + PGI + ADL+V
Sbjct: 114 L-NLDEIDLLFIENVGNLICPADFDLGTHKRIVVISTTEGDDTIEKH--PGIMKTADLIV 170
Query: 126 INKTDLASAIGADLAVMERDALRM 149
INK DLA A+GAD+ ME DA R+
Sbjct: 171 INKIDLADAVGADIKKMENDAKRI 194
>pdb|2HF8|A Chain A, Crystal Structure Of Hypb From Methanocaldococcus
Jannaschii In The Triphosphate Form, In Complex With
Zinc
pdb|2HF8|B Chain B, Crystal Structure Of Hypb From Methanocaldococcus
Jannaschii In The Triphosphate Form, In Complex With
Zinc
Length = 226
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 13/144 (9%)
Query: 8 LRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEE 67
L+DKY +A + D+ K D E ++GA ++ + TG H D + LE+
Sbjct: 62 LKDKYKIACIAGDVIAKFDAERXEKHGA----KVVPLNTGKECHL----DAHLVGHALED 113
Query: 68 LSNLFKADLLLCESGGDNLA-ANFSRELADYIIYIIDVSGGDKIPRKGGPGITQ-ADLLV 125
L NL + DLL E+ G+ + A+F I+ I G D I + PGI + ADL+V
Sbjct: 114 L-NLDEIDLLFIENVGNLICPADFDLGTHKRIVVISTTEGDDTIEKH--PGIXKTADLIV 170
Query: 126 INKTDLASAIGADLAVMERDALRM 149
INK DLA A+GAD+ E DA R+
Sbjct: 171 INKIDLADAVGADIKKXENDAKRI 194
>pdb|2WSM|A Chain A, Crystal Structure Of Hydrogenase Maturation Factor Hypb
From Archaeoglobus Fulgidus
pdb|2WSM|B Chain B, Crystal Structure Of Hydrogenase Maturation Factor Hypb
From Archaeoglobus Fulgidus
Length = 221
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 13/138 (9%)
Query: 10 DKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELS 69
++ + A+ D+ +K D E + R G E A+ TG H D + L++ S
Sbjct: 56 NEVKIGAMLGDVVSKADYERVRRFGIKAE----AISTGKECHL----DAHMIYHRLKKFS 107
Query: 70 NLFKADLLLCESGGDNLAANFSRELAD-YIIYIIDVSGGDKIPRKGGPGITQADLLVINK 128
+ DLLL E+ G NL +L + Y + ++ V+ GD + K ADL+VINK
Sbjct: 108 D---CDLLLIENVG-NLICPVDFDLGENYRVVMVSVTEGDDVVEKHPEIFRVADLIVINK 163
Query: 129 TDLASAIGADLAVMERDA 146
LA A+GAD+ M+ DA
Sbjct: 164 VALAEAVGADVEKMKADA 181
>pdb|2PWY|A Chain A, Crystal Structure Of A M1a58 Trna Methyltransferase
pdb|2PWY|B Chain B, Crystal Structure Of A M1a58 Trna Methyltransferase
Length = 258
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 21 IFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEE 67
+F KE G F G++P E + GG + E++S++ LEE
Sbjct: 22 VFPKEGGVFHHHKGSVPHEALLEAGPGGVVRTHLGEELSVHRPTLEE 68
>pdb|1ZRT|D Chain D, Rhodobacter Capsulatus Cytochrome Bc1 Complex With
Stigmatellin Bound
pdb|1ZRT|Q Chain Q, Rhodobacter Capsulatus Cytochrome Bc1 Complex With
Stigmatellin Bound
Length = 258
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 78 LCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGA 137
L + GG L F RE A + IID G++ RK + D+ T + +G
Sbjct: 48 LADDGGPQLDPTFVREYAAGLDTIIDKDSGEERDRK------ETDMF---PTRVGDGMGP 98
Query: 138 DLAVMER 144
DL+VM +
Sbjct: 99 DLSVMAK 105
>pdb|1MJG|M Chain M, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|N Chain N, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|O Chain O, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|P Chain P, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
Length = 729
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 43 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAA 88
A+ET G I+ D+ IN GP E ++ K D+ + E GG+ A
Sbjct: 305 AMETRGIKLTKIKLDLPINFGPAFEGESIRKGDMYV-EMGGNRTPA 349
>pdb|3I04|M Chain M, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|N Chain N, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|O Chain O, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|P Chain P, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
Length = 728
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 43 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAA 88
A+ET G I+ D+ IN GP E ++ K D+ + E GG+ A
Sbjct: 304 AMETRGIKLTKIKLDLPINFGPAFEGESIRKGDMYV-EMGGNRTPA 348
>pdb|1OAO|C Chain C, Nizn[fe4s4] And Nini[fe4s4] Clusters In Closed And Open
Alpha Subunits Of Acetyl-Coa SynthaseCARBON MONOXIDE
Dehydrogenase
pdb|1OAO|D Chain D, Nizn[fe4s4] And Nini[fe4s4] Clusters In Closed And Open
Alpha Subunits Of Acetyl-Coa SynthaseCARBON MONOXIDE
Dehydrogenase
pdb|2Z8Y|M Chain M, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|N Chain N, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|O Chain O, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|P Chain P, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|3I01|M Chain M, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|N Chain N, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|O Chain O, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|P Chain P, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster
Length = 729
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 43 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAA 88
A+ET G I+ D+ IN GP E ++ K D+ + E GG+ A
Sbjct: 305 AMETRGIKLTKIKLDLPINFGPAFEGESIRKGDMYV-EMGGNRTPA 349
>pdb|3PFO|A Chain A, Crystal Structure Of A Putative Acetylornithine
Deacetylase (Rpa2325) From Rhodopseudomonas Palustris
Cga009 At 1.90 A Resolution
pdb|3PFO|B Chain B, Crystal Structure Of A Putative Acetylornithine
Deacetylase (Rpa2325) From Rhodopseudomonas Palustris
Cga009 At 1.90 A Resolution
Length = 433
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 33 NGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGG 83
G P+E R +E C A D ++ P E + + F+AD +CE GG
Sbjct: 303 TGDTPQEAXRGIEK--CLADAQATDSFLSENPAELVWSGFQADPAVCEPGG 351
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.142 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,380,042
Number of Sequences: 62578
Number of extensions: 221667
Number of successful extensions: 436
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 426
Number of HSP's gapped (non-prelim): 20
length of query: 178
length of database: 14,973,337
effective HSP length: 92
effective length of query: 86
effective length of database: 9,216,161
effective search space: 792589846
effective search space used: 792589846
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)