Query 030407
Match_columns 178
No_of_seqs 212 out of 1497
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 13:16:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030407.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030407hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0378 HypB Ni2+-binding GTPa 100.0 3.5E-32 7.6E-37 207.8 14.4 166 1-177 30-200 (202)
2 COG0523 Putative GTPases (G3E 100.0 1.3E-33 2.8E-38 233.8 6.5 158 2-171 19-194 (323)
3 PRK10463 hydrogenase nickel in 100.0 8.3E-30 1.8E-34 207.5 15.3 166 1-176 121-287 (290)
4 TIGR00101 ureG urease accessor 100.0 5.8E-30 1.2E-34 199.7 13.1 173 2-176 19-194 (199)
5 PF02492 cobW: CobW/HypB/UreG, 100.0 4.1E-30 8.8E-35 197.1 5.9 146 1-157 17-178 (178)
6 PRK11537 putative GTP-binding 99.9 3.4E-28 7.3E-33 201.7 8.0 144 2-159 22-186 (318)
7 TIGR02475 CobW cobalamin biosy 99.9 8.2E-27 1.8E-31 195.1 12.0 153 11-171 30-223 (341)
8 KOG2743 Cobalamin synthesis pr 99.9 1.1E-27 2.3E-32 193.1 4.6 152 11-170 83-259 (391)
9 TIGR00073 hypB hydrogenase acc 99.9 7.5E-26 1.6E-30 177.2 14.9 165 2-177 40-206 (207)
10 COG1703 ArgK Putative periplas 99.9 2.6E-21 5.6E-26 156.6 12.9 168 2-176 69-252 (323)
11 PF03308 ArgK: ArgK protein; 99.9 9.9E-22 2.2E-26 156.9 7.9 168 2-176 47-228 (266)
12 PRK09435 membrane ATPase/prote 99.8 1.3E-20 2.8E-25 156.9 12.8 170 2-176 74-258 (332)
13 cd03112 CobW_like The function 99.8 5.8E-21 1.2E-25 143.9 5.5 115 11-131 26-158 (158)
14 TIGR00750 lao LAO/AO transport 99.6 2E-14 4.4E-19 118.6 12.0 168 2-176 52-236 (300)
15 COG1160 Predicted GTPases [Gen 99.1 2.6E-10 5.6E-15 97.4 6.6 105 72-176 224-349 (444)
16 PF10662 PduV-EutP: Ethanolami 99.0 3.4E-09 7.4E-14 78.3 9.1 96 77-175 39-143 (143)
17 cd04163 Era Era subfamily. Er 99.0 2.3E-09 5E-14 78.7 7.0 102 73-176 50-167 (168)
18 cd03114 ArgK-like The function 98.9 3.8E-09 8.1E-14 78.7 7.6 122 3-130 18-148 (148)
19 PRK15467 ethanolamine utilizat 98.9 6.1E-09 1.3E-13 78.1 8.0 81 94-177 64-146 (158)
20 cd00881 GTP_translation_factor 98.9 5E-09 1.1E-13 79.2 7.5 102 73-177 61-186 (189)
21 cd01887 IF2_eIF5B IF2/eIF5B (i 98.9 8.3E-09 1.8E-13 76.8 8.1 102 72-177 48-165 (168)
22 COG1159 Era GTPase [General fu 98.9 7.7E-09 1.7E-13 84.3 8.1 104 71-176 51-170 (298)
23 PRK00089 era GTPase Era; Revie 98.9 1.5E-08 3.3E-13 83.0 9.6 104 72-177 51-170 (292)
24 TIGR02528 EutP ethanolamine ut 98.9 1E-08 2.2E-13 74.6 7.6 79 94-174 62-141 (142)
25 PRK13768 GTPase; Provisional 98.9 1.2E-08 2.6E-13 82.4 8.6 109 64-176 87-245 (253)
26 cd01895 EngA2 EngA2 subfamily. 98.9 1.6E-08 3.6E-13 74.9 8.6 105 72-176 48-173 (174)
27 cd01889 SelB_euk SelB subfamil 98.8 1.4E-08 3.1E-13 78.1 8.3 102 73-176 67-184 (192)
28 TIGR00436 era GTP-binding prot 98.8 1.2E-08 2.6E-13 82.9 8.3 103 73-177 47-163 (270)
29 cd00880 Era_like Era (E. coli 98.8 2.1E-08 4.6E-13 72.5 8.7 102 73-176 44-162 (163)
30 cd04160 Arfrp1 Arfrp1 subfamil 98.8 1.1E-08 2.3E-13 76.3 6.9 100 73-175 49-166 (167)
31 KOG0092 GTPase Rab5/YPT51 and 98.8 1.2E-08 2.6E-13 78.2 7.0 101 73-176 53-165 (200)
32 TIGR03594 GTPase_EngA ribosome 98.8 1.2E-08 2.7E-13 87.6 7.9 102 73-176 219-342 (429)
33 PRK15494 era GTPase Era; Provi 98.8 1.7E-08 3.8E-13 84.7 8.4 102 73-177 99-215 (339)
34 cd01890 LepA LepA subfamily. 98.8 3E-08 6.5E-13 74.8 8.2 102 72-176 65-175 (179)
35 cd04157 Arl6 Arl6 subfamily. 98.8 3E-08 6.4E-13 73.3 7.9 101 73-176 44-162 (162)
36 PRK00093 GTP-binding protein D 98.8 2.3E-08 5E-13 86.2 8.1 102 73-176 220-342 (435)
37 cd04171 SelB SelB subfamily. 98.8 4E-08 8.7E-13 72.6 8.3 101 73-175 50-163 (164)
38 cd04149 Arf6 Arf6 subfamily. 98.8 2.3E-08 5.1E-13 75.4 7.1 101 73-175 52-167 (168)
39 PTZ00099 rab6; Provisional 98.8 3.1E-08 6.7E-13 75.7 7.5 102 72-176 27-140 (176)
40 cd04154 Arl2 Arl2 subfamily. 98.8 2.4E-08 5.2E-13 75.3 6.8 99 73-174 57-171 (173)
41 cd01897 NOG NOG1 is a nucleola 98.7 4.4E-08 9.5E-13 73.0 7.7 100 73-176 46-166 (168)
42 cd01888 eIF2_gamma eIF2-gamma 98.7 4.3E-08 9.3E-13 76.4 7.3 101 74-176 83-197 (203)
43 cd04165 GTPBP1_like GTPBP1-lik 98.7 7.4E-08 1.6E-12 76.5 8.5 103 72-176 82-221 (224)
44 cd04158 ARD1 ARD1 subfamily. 98.7 4.7E-08 1E-12 73.6 7.0 99 73-175 42-158 (169)
45 cd04120 Rab12 Rab12 subfamily. 98.7 5E-08 1.1E-12 76.2 7.4 101 73-175 48-160 (202)
46 cd04136 Rap_like Rap-like subf 98.7 7.5E-08 1.6E-12 71.2 7.9 101 73-176 48-161 (163)
47 KOG0462 Elongation factor-type 98.7 2.9E-08 6.2E-13 86.6 6.4 98 74-175 125-232 (650)
48 cd04151 Arl1 Arl1 subfamily. 98.7 5.2E-08 1.1E-12 72.2 7.0 100 73-175 42-157 (158)
49 PF00009 GTP_EFTU: Elongation 98.7 2.4E-08 5.2E-13 76.7 5.3 102 72-176 68-185 (188)
50 cd04150 Arf1_5_like Arf1-Arf5- 98.7 5.7E-08 1.2E-12 72.5 7.0 100 73-175 43-158 (159)
51 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.7 6E-08 1.3E-12 74.1 7.3 102 72-176 50-168 (183)
52 cd04107 Rab32_Rab38 Rab38/Rab3 98.7 1.1E-07 2.3E-12 73.7 8.5 102 73-176 49-166 (201)
53 cd04156 ARLTS1 ARLTS1 subfamil 98.7 6E-08 1.3E-12 71.7 6.8 102 73-176 43-160 (160)
54 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.7 6.6E-08 1.4E-12 73.2 7.1 100 73-175 58-173 (174)
55 cd00877 Ran Ran (Ras-related n 98.7 8.4E-08 1.8E-12 72.1 7.0 100 73-177 48-158 (166)
56 smart00177 ARF ARF-like small 98.7 9E-08 2E-12 72.6 7.2 102 73-177 56-173 (175)
57 PRK03003 GTP-binding protein D 98.6 9.4E-08 2E-12 83.6 8.1 102 73-176 258-380 (472)
58 cd01859 MJ1464 MJ1464. This f 98.6 1.2E-07 2.7E-12 70.5 7.6 78 95-176 13-94 (156)
59 cd04175 Rap1 Rap1 subgroup. T 98.6 1.1E-07 2.4E-12 70.7 7.2 102 73-177 48-162 (164)
60 cd04126 Rab20 Rab20 subfamily. 98.6 1.4E-07 3.1E-12 74.7 7.8 103 73-176 43-188 (220)
61 PLN00223 ADP-ribosylation fact 98.6 1.3E-07 2.7E-12 72.4 7.2 102 72-176 59-176 (181)
62 cd01894 EngA1 EngA1 subfamily. 98.6 1.9E-07 4.1E-12 68.3 7.9 98 73-176 44-156 (157)
63 smart00173 RAS Ras subfamily o 98.6 1.5E-07 3.3E-12 69.8 7.5 102 73-177 47-161 (164)
64 cd04119 RJL RJL (RabJ-Like) su 98.6 1.7E-07 3.8E-12 69.3 7.8 100 73-175 48-164 (168)
65 PRK09518 bifunctional cytidyla 98.6 1.4E-07 3E-12 86.3 8.6 102 73-176 497-619 (712)
66 cd00878 Arf_Arl Arf (ADP-ribos 98.6 1.6E-07 3.5E-12 69.3 7.5 100 73-175 42-157 (158)
67 cd01849 YlqF_related_GTPase Yl 98.6 1.7E-07 3.7E-12 69.9 7.6 77 96-175 1-82 (155)
68 cd04164 trmE TrmE (MnmE, ThdF, 98.6 1.1E-07 2.4E-12 69.5 6.3 96 73-177 48-156 (157)
69 cd01879 FeoB Ferrous iron tran 98.6 1.3E-07 2.7E-12 69.5 6.5 101 73-177 42-156 (158)
70 smart00178 SAR Sar1p-like memb 98.6 1.3E-07 2.8E-12 72.4 6.7 100 73-175 60-182 (184)
71 cd04121 Rab40 Rab40 subfamily. 98.6 1.7E-07 3.7E-12 72.4 7.4 101 73-176 54-165 (189)
72 cd01858 NGP_1 NGP-1. Autoanti 98.6 8.6E-08 1.9E-12 71.6 5.5 80 94-176 8-93 (157)
73 cd04139 RalA_RalB RalA/RalB su 98.6 1.9E-07 4.2E-12 68.9 7.4 101 73-176 47-160 (164)
74 cd04138 H_N_K_Ras_like H-Ras/N 98.6 2.2E-07 4.9E-12 68.3 7.6 99 75-177 50-161 (162)
75 cd00879 Sar1 Sar1 subfamily. 98.6 2E-07 4.3E-12 71.1 7.5 101 73-176 62-189 (190)
76 cd01893 Miro1 Miro1 subfamily. 98.6 6.9E-08 1.5E-12 72.3 4.8 103 72-177 45-163 (166)
77 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.6 2.2E-07 4.9E-12 70.3 7.6 101 73-176 49-162 (172)
78 cd04101 RabL4 RabL4 (Rab-like4 98.6 1.1E-07 2.3E-12 70.6 5.7 102 72-176 50-162 (164)
79 cd04145 M_R_Ras_like M-Ras/R-R 98.6 3E-07 6.4E-12 68.0 8.0 101 74-177 50-163 (164)
80 cd01863 Rab18 Rab18 subfamily. 98.6 3.5E-07 7.5E-12 67.7 8.3 99 73-175 48-159 (161)
81 TIGR02729 Obg_CgtA Obg family 98.6 2.2E-07 4.9E-12 77.7 8.1 101 74-177 205-328 (329)
82 cd04122 Rab14 Rab14 subfamily. 98.6 2.4E-07 5.3E-12 69.1 7.5 100 73-175 50-161 (166)
83 PRK12299 obgE GTPase CgtA; Rev 98.6 3.8E-07 8.2E-12 76.6 9.3 100 74-177 206-327 (335)
84 cd04140 ARHI_like ARHI subfami 98.6 2.3E-07 4.9E-12 69.3 7.2 102 73-177 48-164 (165)
85 cd04110 Rab35 Rab35 subfamily. 98.6 2.5E-07 5.4E-12 71.6 7.6 100 74-176 55-165 (199)
86 cd04127 Rab27A Rab27a subfamil 98.6 3.4E-07 7.4E-12 69.1 8.1 101 73-176 62-175 (180)
87 cd04128 Spg1 Spg1p. Spg1p (se 98.6 2.8E-07 6E-12 70.6 7.7 100 73-176 48-164 (182)
88 cd01873 RhoBTB RhoBTB subfamil 98.6 1.4E-07 3.1E-12 73.2 6.1 103 72-177 64-195 (195)
89 TIGR00157 ribosome small subun 98.6 1.8E-07 4E-12 75.2 6.9 78 94-175 36-120 (245)
90 cd01878 HflX HflX subfamily. 98.6 2.3E-07 4.9E-12 71.8 7.2 95 74-175 89-202 (204)
91 cd04109 Rab28 Rab28 subfamily. 98.6 3.3E-07 7.2E-12 71.8 8.1 101 73-176 49-164 (215)
92 cd01898 Obg Obg subfamily. Th 98.6 3.9E-07 8.5E-12 67.9 8.1 100 74-176 48-169 (170)
93 cd01855 YqeH YqeH. YqeH is an 98.5 3.8E-07 8.2E-12 70.1 8.2 82 94-176 34-123 (190)
94 cd04113 Rab4 Rab4 subfamily. 98.5 2.7E-07 5.9E-12 68.3 7.1 101 73-176 48-160 (161)
95 cd04124 RabL2 RabL2 subfamily. 98.5 1.6E-07 3.5E-12 70.0 5.8 98 73-176 48-156 (161)
96 cd01865 Rab3 Rab3 subfamily. 98.5 4.3E-07 9.4E-12 67.8 8.1 102 73-177 49-162 (165)
97 cd04176 Rap2 Rap2 subgroup. T 98.5 1.8E-07 3.8E-12 69.5 5.6 100 74-176 49-161 (163)
98 cd01864 Rab19 Rab19 subfamily. 98.5 4.2E-07 9.1E-12 67.7 7.7 101 73-175 51-163 (165)
99 cd04148 RGK RGK subfamily. Th 98.5 2.3E-07 5E-12 73.3 6.4 103 73-177 49-162 (221)
100 cd04106 Rab23_lke Rab23-like s 98.5 1.5E-07 3.2E-12 69.6 5.0 100 73-175 50-160 (162)
101 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.5 4.9E-07 1.1E-11 67.3 7.8 101 73-176 50-162 (166)
102 PRK09866 hypothetical protein; 98.5 4.5E-07 9.9E-12 81.2 8.7 103 73-175 229-350 (741)
103 cd04142 RRP22 RRP22 subfamily. 98.5 5.6E-07 1.2E-11 69.9 8.3 102 73-175 48-171 (198)
104 PTZ00133 ADP-ribosylation fact 98.5 3.8E-07 8.3E-12 69.7 7.2 101 72-175 59-175 (182)
105 KOG0088 GTPase Rab21, small G 98.5 1.4E-07 3E-12 70.6 4.4 100 73-174 61-171 (218)
106 COG0532 InfB Translation initi 98.5 4.4E-07 9.4E-12 79.1 8.1 101 73-177 54-169 (509)
107 cd04123 Rab21 Rab21 subfamily. 98.5 5.8E-07 1.3E-11 66.0 7.7 101 73-176 48-160 (162)
108 cd04143 Rhes_like Rhes_like su 98.5 7.1E-07 1.5E-11 71.8 8.8 103 73-177 47-170 (247)
109 smart00176 RAN Ran (Ras-relate 98.5 1.4E-07 3E-12 73.6 4.4 99 73-176 43-152 (200)
110 KOG0094 GTPase Rab6/YPT6/Ryh1, 98.5 7.8E-07 1.7E-11 68.6 8.2 101 72-175 69-182 (221)
111 PTZ00327 eukaryotic translatio 98.5 5.2E-07 1.1E-11 78.7 8.1 99 75-175 118-230 (460)
112 cd01867 Rab8_Rab10_Rab13_like 98.5 7.2E-07 1.6E-11 66.7 7.9 101 73-176 51-163 (167)
113 cd01892 Miro2 Miro2 subfamily. 98.5 2.5E-07 5.4E-12 69.8 5.3 102 74-177 54-165 (169)
114 TIGR03156 GTP_HflX GTP-binding 98.5 4E-07 8.6E-12 76.9 7.0 96 73-176 236-350 (351)
115 PTZ00369 Ras-like protein; Pro 98.5 6E-07 1.3E-11 68.8 7.5 100 74-176 53-165 (189)
116 cd04155 Arl3 Arl3 subfamily. 98.5 5.4E-07 1.2E-11 67.5 7.0 102 73-176 57-173 (173)
117 cd01860 Rab5_related Rab5-rela 98.5 8E-07 1.7E-11 65.7 7.9 101 73-176 49-161 (163)
118 TIGR00475 selB selenocysteine- 98.5 5.4E-07 1.2E-11 80.8 8.1 102 74-177 50-165 (581)
119 cd04112 Rab26 Rab26 subfamily. 98.5 7.4E-07 1.6E-11 68.4 7.8 101 73-176 49-161 (191)
120 cd01856 YlqF YlqF. Proteins o 98.5 8.9E-07 1.9E-11 67.1 8.2 78 94-175 19-98 (171)
121 cd01881 Obg_like The Obg-like 98.5 1.3E-06 2.8E-11 65.3 8.9 102 73-176 43-175 (176)
122 cd00882 Ras_like_GTPase Ras-li 98.5 7E-07 1.5E-11 63.5 7.1 100 73-174 44-156 (157)
123 cd04132 Rho4_like Rho4-like su 98.5 2.8E-07 6.1E-12 70.1 5.3 103 73-176 48-165 (187)
124 cd01871 Rac1_like Rac1-like su 98.5 2.4E-07 5.2E-12 70.3 4.8 101 73-175 48-172 (174)
125 PRK10512 selenocysteinyl-tRNA- 98.5 6.5E-07 1.4E-11 80.7 8.3 101 75-177 52-165 (614)
126 cd04137 RheB Rheb (Ras Homolog 98.5 6.1E-07 1.3E-11 67.8 7.0 101 73-176 48-161 (180)
127 cd04147 Ras_dva Ras-dva subfam 98.5 8.3E-07 1.8E-11 68.6 7.9 102 74-176 47-161 (198)
128 cd04144 Ras2 Ras2 subfamily. 98.4 9E-07 2E-11 67.9 7.9 99 74-175 47-160 (190)
129 cd01874 Cdc42 Cdc42 subfamily. 98.4 2.7E-07 5.8E-12 70.1 4.9 101 73-177 48-174 (175)
130 PLN03118 Rab family protein; P 98.4 6.9E-07 1.5E-11 69.7 7.2 101 73-176 61-175 (211)
131 cd04108 Rab36_Rab34 Rab34/Rab3 98.4 1.3E-06 2.8E-11 66.0 8.4 102 73-177 48-164 (170)
132 cd01866 Rab2 Rab2 subfamily. 98.4 1.1E-06 2.4E-11 65.9 7.9 101 73-176 52-164 (168)
133 cd04134 Rho3 Rho3 subfamily. 98.4 5.9E-07 1.3E-11 68.9 6.6 101 73-177 47-173 (189)
134 cd04117 Rab15 Rab15 subfamily. 98.4 1E-06 2.2E-11 65.7 7.6 101 73-176 48-160 (161)
135 smart00174 RHO Rho (Ras homolo 98.4 7.1E-07 1.5E-11 66.9 6.6 103 73-176 45-170 (174)
136 cd04161 Arl2l1_Arl13_like Arl2 98.4 1.1E-06 2.3E-11 66.1 7.3 101 72-175 41-166 (167)
137 cd01861 Rab6 Rab6 subfamily. 98.4 1.4E-06 3.1E-11 64.2 7.8 100 74-176 49-160 (161)
138 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.4 4.3E-07 9.3E-12 69.7 4.9 102 73-176 52-178 (182)
139 CHL00189 infB translation init 98.4 1.3E-06 2.9E-11 79.9 8.8 101 73-176 294-408 (742)
140 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.4 9.4E-07 2E-11 70.6 6.9 102 72-175 59-185 (232)
141 cd04114 Rab30 Rab30 subfamily. 98.4 1.4E-06 3E-11 64.9 7.5 101 73-176 55-167 (169)
142 cd01862 Rab7 Rab7 subfamily. 98.4 9.5E-07 2.1E-11 65.8 6.5 101 74-176 49-165 (172)
143 cd04111 Rab39 Rab39 subfamily. 98.4 1.4E-06 3.1E-11 68.2 7.7 100 73-175 51-163 (211)
144 cd01870 RhoA_like RhoA-like su 98.4 7.8E-07 1.7E-11 66.7 6.0 102 73-177 48-174 (175)
145 cd04103 Centaurin_gamma Centau 98.4 1.2E-06 2.5E-11 65.6 6.8 99 74-175 47-156 (158)
146 COG2403 Predicted GTPase [Gene 98.4 1.3E-06 2.8E-11 73.4 7.6 79 74-158 225-305 (449)
147 COG0481 LepA Membrane GTPase L 98.4 7.2E-07 1.6E-11 77.0 6.2 96 74-175 76-183 (603)
148 PRK04213 GTP-binding protein; 98.4 3.9E-06 8.4E-11 64.7 9.7 80 95-176 91-190 (201)
149 cd04116 Rab9 Rab9 subfamily. 98.4 2.7E-06 5.8E-11 63.5 8.5 100 73-175 53-168 (170)
150 cd04130 Wrch_1 Wrch-1 subfamil 98.4 8.9E-07 1.9E-11 66.7 5.8 101 73-174 47-170 (173)
151 smart00175 RAB Rab subfamily o 98.4 2.3E-06 5E-11 63.1 7.9 100 74-176 49-160 (164)
152 cd01868 Rab11_like Rab11-like. 98.3 1.7E-06 3.8E-11 64.2 7.2 101 73-176 51-163 (165)
153 PRK12298 obgE GTPase CgtA; Rev 98.3 2.1E-06 4.7E-11 73.4 8.6 101 75-177 208-332 (390)
154 PF00025 Arf: ADP-ribosylation 98.3 2.4E-06 5.1E-11 65.0 8.0 103 72-176 56-174 (175)
155 cd04133 Rop_like Rop subfamily 98.3 6.3E-07 1.4E-11 68.5 4.8 103 73-177 48-172 (176)
156 cd01875 RhoG RhoG subfamily. 98.3 5.8E-07 1.3E-11 69.2 4.6 102 73-176 50-175 (191)
157 PRK05291 trmE tRNA modificatio 98.3 1.1E-06 2.5E-11 76.4 6.9 95 73-177 262-369 (449)
158 COG0486 ThdF Predicted GTPase 98.3 1.3E-06 2.9E-11 75.2 7.0 98 71-177 262-375 (454)
159 cd04131 Rnd Rnd subfamily. Th 98.3 7.7E-07 1.7E-11 67.9 5.1 102 73-176 48-174 (178)
160 cd04177 RSR1 RSR1 subgroup. R 98.3 2.3E-06 5E-11 64.0 7.6 101 74-176 49-162 (168)
161 cd04125 RabA_like RabA-like su 98.3 1.6E-06 3.5E-11 66.2 6.7 100 73-176 48-160 (188)
162 cd04118 Rab24 Rab24 subfamily. 98.3 1.4E-06 3.1E-11 66.6 6.4 100 74-176 50-164 (193)
163 PLN03071 GTP-binding nuclear p 98.3 9.6E-07 2.1E-11 69.6 5.5 99 73-176 61-170 (219)
164 cd04159 Arl10_like Arl10-like 98.3 2.7E-06 5.9E-11 61.8 7.5 100 73-175 43-158 (159)
165 TIGR00487 IF-2 translation ini 98.3 2.6E-06 5.7E-11 76.4 8.7 98 75-175 136-247 (587)
166 cd01884 EF_Tu EF-Tu subfamily. 98.3 3.4E-06 7.4E-11 65.5 8.4 102 73-175 64-190 (195)
167 cd00876 Ras Ras family. The R 98.3 2.7E-06 5.9E-11 62.3 7.3 101 73-176 46-159 (160)
168 cd00157 Rho Rho (Ras homology) 98.3 7.2E-07 1.6E-11 66.4 4.3 102 73-175 47-170 (171)
169 COG4917 EutP Ethanolamine util 98.3 6.1E-06 1.3E-10 59.6 8.7 99 75-176 38-144 (148)
170 cd01891 TypA_BipA TypA (tyrosi 98.3 3E-06 6.4E-11 65.2 7.6 96 73-169 64-173 (194)
171 TIGR03596 GTPase_YlqF ribosome 98.3 2.9E-06 6.2E-11 69.3 7.7 79 94-176 21-101 (276)
172 PRK04000 translation initiatio 98.3 3.1E-06 6.8E-11 72.9 8.1 101 74-176 85-199 (411)
173 PLN03110 Rab GTPase; Provision 98.3 2E-06 4.4E-11 67.5 6.4 101 73-176 60-172 (216)
174 COG2262 HflX GTPases [General 98.3 2.5E-06 5.4E-11 72.4 7.1 98 73-177 239-355 (411)
175 PRK12289 GTPase RsgA; Reviewed 98.3 1.8E-06 3.9E-11 72.9 6.1 77 95-175 90-172 (352)
176 TIGR01393 lepA GTP-binding pro 98.3 3.2E-06 7E-11 76.0 8.0 100 73-176 69-178 (595)
177 PRK12297 obgE GTPase CgtA; Rev 98.3 5.7E-06 1.2E-10 71.5 9.1 99 73-177 205-326 (424)
178 PRK14845 translation initiatio 98.2 4.9E-06 1.1E-10 78.6 9.0 101 74-175 526-670 (1049)
179 cd04162 Arl9_Arfrp2_like Arl9/ 98.2 2.4E-06 5.3E-11 64.0 5.7 101 72-175 42-163 (164)
180 cd04115 Rab33B_Rab33A Rab33B/R 98.2 6.2E-06 1.3E-10 61.9 7.9 102 73-176 50-167 (170)
181 TIGR03680 eif2g_arch translati 98.2 4.2E-06 9E-11 72.0 7.5 102 73-176 79-194 (406)
182 PRK05433 GTP-binding protein L 98.2 4.6E-06 1E-10 75.0 8.0 100 73-176 73-182 (600)
183 PRK05306 infB translation init 98.2 5.5E-06 1.2E-10 76.4 8.6 99 74-175 337-449 (787)
184 cd00154 Rab Rab family. Rab G 98.2 7.1E-06 1.5E-10 59.5 7.7 99 73-174 48-158 (159)
185 cd04135 Tc10 TC10 subfamily. 98.2 4.4E-06 9.5E-11 62.6 6.6 103 73-176 47-172 (174)
186 TIGR00437 feoB ferrous iron tr 98.2 2.4E-06 5.2E-11 76.7 6.0 101 73-176 40-153 (591)
187 cd01883 EF1_alpha Eukaryotic e 98.2 2.1E-06 4.6E-11 67.6 5.0 96 72-167 75-194 (219)
188 cd04146 RERG_RasL11_like RERG/ 98.2 2.5E-06 5.4E-11 63.5 5.1 101 74-176 47-162 (165)
189 TIGR03598 GTPase_YsxC ribosome 98.2 2.1E-06 4.6E-11 65.2 4.7 91 75-167 65-179 (179)
190 PRK00454 engB GTP-binding prot 98.2 4.6E-06 1E-10 63.7 6.6 102 74-177 70-193 (196)
191 cd01876 YihA_EngB The YihA (En 98.2 6E-06 1.3E-10 60.6 6.9 81 95-177 82-170 (170)
192 PLN03108 Rab family protein; P 98.2 7.3E-06 1.6E-10 64.1 7.4 99 74-175 55-165 (210)
193 PRK09563 rbgA GTPase YlqF; Rev 98.2 6.4E-06 1.4E-10 67.7 7.3 79 94-176 24-104 (287)
194 KOG1423 Ras-like GTPase ERA [C 98.2 5.6E-06 1.2E-10 68.2 6.7 107 71-177 117-270 (379)
195 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.2 2.7E-06 5.8E-11 67.5 4.7 102 72-175 47-173 (222)
196 KOG0078 GTP-binding protein SE 98.2 7.9E-06 1.7E-10 63.6 7.0 98 74-175 61-171 (207)
197 PRK01889 GTPase RsgA; Reviewed 98.1 8.8E-06 1.9E-10 68.9 7.9 76 95-174 113-193 (356)
198 PRK12296 obgE GTPase CgtA; Rev 98.1 6.7E-06 1.5E-10 72.3 7.1 100 74-177 206-339 (500)
199 TIGR00491 aIF-2 translation in 98.1 1.3E-05 2.8E-10 72.0 9.0 101 74-175 69-213 (590)
200 KOG1532 GTPase XAB1, interacts 98.1 1.5E-05 3.3E-10 64.8 8.4 112 63-176 103-262 (366)
201 cd01857 HSR1_MMR1 HSR1/MMR1. 98.1 6E-06 1.3E-10 60.6 5.5 68 94-165 11-84 (141)
202 KOG0084 GTPase Rab1/YPT1, smal 98.1 1.3E-05 2.8E-10 61.9 7.3 99 74-175 58-169 (205)
203 TIGR02034 CysN sulfate adenyly 98.1 9E-06 2E-10 69.9 7.2 96 73-168 79-187 (406)
204 TIGR00483 EF-1_alpha translati 98.1 1.1E-05 2.4E-10 69.7 7.7 96 73-168 84-197 (426)
205 cd04166 CysN_ATPS CysN_ATPS su 98.1 8.6E-06 1.9E-10 63.6 6.4 96 73-168 76-184 (208)
206 cd01854 YjeQ_engC YjeQ/EngC. 98.1 3.4E-06 7.4E-11 69.3 4.3 77 95-175 79-161 (287)
207 PRK05124 cysN sulfate adenylyl 98.1 8.9E-06 1.9E-10 71.3 7.0 97 73-169 106-216 (474)
208 PRK11058 GTPase HflX; Provisio 98.1 1.8E-05 3.8E-10 68.6 8.7 96 75-176 246-360 (426)
209 PRK12317 elongation factor 1-a 98.1 1.1E-05 2.4E-10 69.6 7.2 96 73-168 83-195 (425)
210 TIGR03597 GTPase_YqeH ribosome 98.1 6.7E-06 1.5E-10 69.7 5.6 81 94-175 63-150 (360)
211 COG3276 SelB Selenocysteine-sp 98.1 1.2E-05 2.7E-10 68.8 7.0 103 73-177 49-161 (447)
212 PRK03003 GTP-binding protein D 98.0 7.6E-06 1.7E-10 71.6 5.8 98 73-176 85-197 (472)
213 PRK00098 GTPase RsgA; Reviewed 98.0 8.2E-06 1.8E-10 67.4 5.5 77 95-174 81-163 (298)
214 KOG0394 Ras-related GTPase [Ge 98.0 2.5E-05 5.5E-10 59.9 7.6 102 74-177 58-177 (210)
215 PRK12288 GTPase RsgA; Reviewed 98.0 1.8E-05 3.8E-10 66.9 7.4 79 95-175 121-205 (347)
216 cd04129 Rho2 Rho2 subfamily. 98.0 1.3E-05 2.8E-10 61.3 6.1 103 73-176 48-171 (187)
217 PRK12736 elongation factor Tu; 98.0 3.2E-05 7E-10 66.2 8.5 102 73-176 74-199 (394)
218 PF02421 FeoB_N: Ferrous iron 98.0 2.6E-07 5.7E-12 69.4 -4.0 95 73-173 46-156 (156)
219 COG1160 Predicted GTPases [Gen 98.0 2E-05 4.4E-10 67.8 6.9 98 73-176 50-163 (444)
220 KOG1145 Mitochondrial translat 98.0 3.4E-05 7.4E-10 67.8 8.1 99 74-177 201-315 (683)
221 PRK05506 bifunctional sulfate 97.9 3.5E-05 7.5E-10 69.8 8.2 96 73-168 103-211 (632)
222 TIGR03594 GTPase_EngA ribosome 97.9 2.5E-05 5.4E-10 67.2 6.8 98 73-176 46-158 (429)
223 KOG0098 GTPase Rab2, small G p 97.9 2.1E-05 4.5E-10 60.5 5.3 101 71-174 52-164 (216)
224 PRK00049 elongation factor Tu; 97.9 5.6E-05 1.2E-09 64.8 8.5 103 73-176 74-201 (396)
225 PRK00093 GTP-binding protein D 97.9 3.8E-05 8.2E-10 66.3 7.5 97 73-175 48-159 (435)
226 PRK09518 bifunctional cytidyla 97.9 3.6E-05 7.8E-10 70.7 7.0 98 73-176 322-434 (712)
227 KOG1489 Predicted GTP-binding 97.8 2.5E-05 5.5E-10 64.6 5.0 78 95-176 275-365 (366)
228 KOG0080 GTPase Rab18, small G 97.8 2.6E-05 5.6E-10 58.7 4.5 100 71-173 57-169 (209)
229 PF00071 Ras: Ras family; Int 97.8 4E-05 8.7E-10 56.5 5.6 100 72-175 46-158 (162)
230 PRK12735 elongation factor Tu; 97.8 8.6E-05 1.9E-09 63.7 8.2 102 73-176 74-201 (396)
231 TIGR00231 small_GTP small GTP- 97.8 6.5E-05 1.4E-09 54.0 6.4 53 119-174 108-160 (161)
232 PRK04004 translation initiatio 97.8 9.2E-05 2E-09 66.6 8.5 99 75-174 72-214 (586)
233 PLN00043 elongation factor 1-a 97.8 0.00014 3.1E-09 63.3 9.5 96 73-168 84-203 (447)
234 COG5257 GCD11 Translation init 97.8 5E-05 1.1E-09 63.1 6.2 101 76-176 88-200 (415)
235 PTZ00141 elongation factor 1- 97.8 5E-05 1.1E-09 66.1 6.6 104 73-176 84-223 (446)
236 KOG0079 GTP-binding protein H- 97.8 2.2E-05 4.8E-10 58.3 3.4 103 72-177 55-168 (198)
237 CHL00071 tufA elongation facto 97.8 6.9E-05 1.5E-09 64.5 7.0 90 73-164 74-179 (409)
238 PRK10218 GTP-binding protein; 97.8 6.2E-05 1.3E-09 67.9 6.9 103 73-176 67-193 (607)
239 TIGR00485 EF-Tu translation el 97.8 8.9E-05 1.9E-09 63.5 7.4 101 73-175 74-198 (394)
240 PRK14974 cell division protein 97.8 0.00021 4.5E-09 60.1 9.4 150 2-171 158-323 (336)
241 PRK13796 GTPase YqeH; Provisio 97.8 4.2E-05 9E-10 65.0 5.3 79 96-175 71-156 (365)
242 cd04167 Snu114p Snu114p subfam 97.8 1.9E-05 4.2E-10 61.8 2.9 95 73-167 70-192 (213)
243 KOG0093 GTPase Rab3, small G p 97.7 6.5E-05 1.4E-09 55.8 5.1 101 73-175 69-180 (193)
244 COG0218 Predicted GTPase [Gene 97.7 0.00012 2.6E-09 56.9 6.8 79 96-176 108-195 (200)
245 TIGR01394 TypA_BipA GTP-bindin 97.7 7.7E-05 1.7E-09 67.1 6.5 103 73-176 63-189 (594)
246 PRK09554 feoB ferrous iron tra 97.7 5.3E-05 1.1E-09 70.1 5.1 101 73-176 49-166 (772)
247 PRK10416 signal recognition pa 97.7 0.00054 1.2E-08 57.2 10.4 148 3-170 133-302 (318)
248 KOG0081 GTPase Rab27, small G 97.7 5.5E-05 1.2E-09 56.9 3.9 80 95-176 91-179 (219)
249 cd04178 Nucleostemin_like Nucl 97.6 7.9E-05 1.7E-09 56.8 4.4 52 96-149 1-58 (172)
250 KOG0461 Selenocysteine-specifi 97.6 0.00029 6.2E-09 59.2 7.9 110 67-176 63-191 (522)
251 TIGR00064 ftsY signal recognit 97.6 0.00081 1.8E-08 54.9 10.4 147 3-171 91-261 (272)
252 PLN03127 Elongation factor Tu; 97.6 0.00015 3.3E-09 63.2 6.4 102 73-176 123-250 (447)
253 cd01882 BMS1 Bms1. Bms1 is an 97.5 0.00026 5.6E-09 56.1 6.1 89 73-163 82-181 (225)
254 TIGR00450 mnmE_trmE_thdF tRNA 97.5 0.00034 7.4E-09 60.9 6.9 94 73-175 250-357 (442)
255 cd01896 DRG The developmentall 97.4 0.0003 6.4E-09 56.1 5.7 47 120-175 177-223 (233)
256 KOG0076 GTP-binding ADP-ribosy 97.4 8.4E-05 1.8E-09 56.5 2.2 80 94-175 92-184 (197)
257 KOG0072 GTP-binding ADP-ribosy 97.4 0.00035 7.5E-09 51.8 5.3 100 73-176 63-177 (182)
258 KOG0086 GTPase Rab4, small G p 97.4 0.00038 8.2E-09 52.1 5.4 94 74-172 58-165 (214)
259 KOG0083 GTPase Rab26/Rab37, sm 97.4 0.0001 2.2E-09 54.0 2.3 99 73-174 46-156 (192)
260 COG1162 Predicted GTPases [Gen 97.4 0.00042 9.1E-09 57.2 5.8 96 75-175 49-164 (301)
261 PLN03126 Elongation factor Tu; 97.4 0.00055 1.2E-08 60.2 6.9 90 73-164 143-248 (478)
262 PF03029 ATP_bind_1: Conserved 97.3 0.00018 3.9E-09 57.7 3.3 102 73-176 90-235 (238)
263 COG2895 CysN GTPases - Sulfate 97.3 0.00041 8.9E-09 58.4 5.0 92 73-167 85-192 (431)
264 KOG0095 GTPase Rab30, small G 97.3 0.00014 3.1E-09 54.1 1.9 99 73-174 55-165 (213)
265 cd04168 TetM_like Tet(M)-like 97.2 0.00096 2.1E-08 53.4 6.4 60 73-133 63-130 (237)
266 COG1217 TypA Predicted membran 97.2 0.0028 6E-08 55.2 9.4 101 73-175 67-192 (603)
267 COG0536 Obg Predicted GTPase [ 97.2 0.00095 2.1E-08 55.9 6.4 80 96-176 239-331 (369)
268 PRK12740 elongation factor G; 97.2 0.001 2.2E-08 60.7 7.2 63 72-134 58-127 (668)
269 COG2229 Predicted GTPase [Gene 97.2 0.0014 3E-08 50.3 6.7 99 74-175 68-175 (187)
270 KOG0087 GTPase Rab11/YPT3, sma 97.2 0.00032 6.9E-09 54.9 3.3 101 71-174 60-172 (222)
271 COG0370 FeoB Fe2+ transport sy 97.1 0.0002 4.3E-09 64.5 1.4 98 73-176 49-162 (653)
272 cd01886 EF-G Elongation factor 97.1 0.00084 1.8E-08 54.8 4.9 89 73-162 63-159 (270)
273 KOG1144 Translation initiation 97.0 0.0018 4E-08 59.1 6.9 103 73-176 539-685 (1064)
274 PRK12739 elongation factor G; 97.0 0.0014 3.1E-08 60.1 6.3 62 73-134 72-140 (691)
275 KOG0073 GTP-binding ADP-ribosy 97.0 0.0015 3.2E-08 49.4 5.2 101 72-174 58-174 (185)
276 cd01885 EF2 EF2 (for archaea a 97.0 0.0013 2.9E-08 52.1 4.9 59 73-132 72-138 (222)
277 COG5258 GTPBP1 GTPase [General 96.9 0.0051 1.1E-07 52.5 8.2 98 76-175 203-336 (527)
278 PRK13351 elongation factor G; 96.9 0.0027 5.8E-08 58.2 6.9 61 73-134 72-140 (687)
279 KOG0097 GTPase Rab14, small G 96.8 0.0041 8.8E-08 46.0 6.1 96 73-171 59-166 (215)
280 cd04170 EF-G_bact Elongation f 96.8 0.00074 1.6E-08 54.7 2.4 97 73-173 63-168 (268)
281 COG1084 Predicted GTPase [Gene 96.8 0.0031 6.8E-08 52.6 6.1 99 74-176 215-334 (346)
282 KOG0395 Ras-related GTPase [Ge 96.8 0.0033 7.2E-08 48.9 5.8 101 73-176 50-163 (196)
283 COG5256 TEF1 Translation elong 96.8 0.006 1.3E-07 52.3 7.6 94 73-168 84-201 (428)
284 KOG0070 GTP-binding ADP-ribosy 96.8 0.0045 9.7E-08 47.4 6.0 102 73-177 60-177 (181)
285 PRK00741 prfC peptide chain re 96.7 0.0056 1.2E-07 54.5 7.4 62 73-134 78-146 (526)
286 PTZ00132 GTP-binding nuclear p 96.7 0.0036 7.8E-08 48.7 5.6 97 73-176 57-166 (215)
287 COG0050 TufB GTPases - transla 96.7 0.0068 1.5E-07 50.1 6.9 73 96-169 100-185 (394)
288 TIGR00176 mobB molybdopterin-g 96.6 0.007 1.5E-07 45.3 6.4 74 2-83 17-99 (155)
289 COG1161 Predicted GTPases [Gen 96.6 0.0062 1.3E-07 51.0 6.3 73 95-170 35-109 (322)
290 cd04105 SR_beta Signal recogni 96.6 0.0046 9.9E-08 48.1 5.1 61 73-134 47-124 (203)
291 KOG0075 GTP-binding ADP-ribosy 96.6 0.014 3E-07 43.6 7.3 81 94-176 88-180 (186)
292 PRK00007 elongation factor G; 96.6 0.0032 7E-08 57.8 4.9 88 73-163 74-171 (693)
293 KOG0091 GTPase Rab39, small G 96.5 0.015 3.3E-07 44.1 7.5 111 62-175 46-170 (213)
294 cd01899 Ygr210 Ygr210 subfamil 96.5 0.0054 1.2E-07 51.3 5.5 51 120-175 215-266 (318)
295 KOG0460 Mitochondrial translat 96.5 0.0095 2.1E-07 50.2 6.7 79 96-175 142-242 (449)
296 TIGR00484 EF-G translation elo 96.5 0.0056 1.2E-07 56.2 5.9 88 73-163 74-171 (689)
297 cd04104 p47_IIGP_like p47 (47- 96.5 0.0099 2.2E-07 45.9 6.5 102 73-175 51-181 (197)
298 KOG1191 Mitochondrial GTPase [ 96.5 0.0035 7.5E-08 54.8 4.1 104 71-176 313-448 (531)
299 COG1163 DRG Predicted GTPase [ 96.4 0.0063 1.4E-07 50.8 5.4 47 120-175 240-286 (365)
300 KOG2484 GTPase [General functi 96.4 0.0088 1.9E-07 51.1 5.9 63 95-161 147-215 (435)
301 KOG1424 Predicted GTP-binding 96.2 0.0072 1.6E-07 53.1 4.8 64 95-162 175-244 (562)
302 KOG0458 Elongation factor 1 al 96.1 0.014 3E-07 52.0 5.9 74 95-168 279-372 (603)
303 TIGR01425 SRP54_euk signal rec 96.0 0.014 3E-07 50.7 5.6 145 3-169 119-281 (429)
304 KOG0071 GTP-binding ADP-ribosy 96.0 0.014 3.1E-07 43.2 4.7 81 94-176 84-176 (180)
305 KOG0466 Translation initiation 95.6 0.019 4.2E-07 47.8 4.6 54 122-175 182-238 (466)
306 COG3640 CooC CO dehydrogenase 95.6 0.0084 1.8E-07 48.0 2.4 79 45-132 111-198 (255)
307 cd03115 SRP The signal recogni 95.5 0.12 2.5E-06 38.8 8.1 118 3-134 19-154 (173)
308 KOG4252 GTP-binding protein [S 95.4 0.01 2.3E-07 45.6 2.2 96 77-175 72-178 (246)
309 KOG3883 Ras family small GTPas 95.3 0.095 2.1E-06 39.5 6.8 99 73-174 59-171 (198)
310 COG0541 Ffh Signal recognition 95.2 0.24 5.3E-06 43.0 10.0 146 3-169 119-281 (451)
311 COG0552 FtsY Signal recognitio 94.8 0.11 2.4E-06 43.6 6.8 148 2-171 157-328 (340)
312 COG1100 GTPase SAR1 and relate 94.8 0.12 2.5E-06 39.9 6.7 102 73-175 53-182 (219)
313 PRK11889 flhF flagellar biosyn 94.8 0.2 4.3E-06 43.4 8.4 96 63-168 310-418 (436)
314 TIGR00503 prfC peptide chain r 94.7 0.028 6E-07 50.2 3.2 62 73-134 79-147 (527)
315 KOG0393 Ras-related small GTPa 94.7 0.099 2.2E-06 40.8 5.8 99 74-174 53-175 (198)
316 PRK10867 signal recognition pa 94.6 0.28 6.1E-06 42.8 9.1 147 3-170 119-283 (433)
317 cd04169 RF3 RF3 subfamily. Pe 94.5 0.033 7.1E-07 45.3 2.9 63 72-134 69-138 (267)
318 KOG0780 Signal recognition par 94.5 0.14 3E-06 44.0 6.6 145 3-169 120-282 (483)
319 PRK09602 translation-associate 94.2 0.077 1.7E-06 45.7 4.7 48 120-173 218-266 (396)
320 PRK14489 putative bifunctional 93.7 0.25 5.4E-06 42.0 6.9 79 1-83 222-308 (366)
321 TIGR00959 ffh signal recogniti 93.4 0.98 2.1E-05 39.4 10.2 145 3-169 118-281 (428)
322 KOG0090 Signal recognition par 93.4 0.13 2.8E-06 40.7 4.2 22 154-176 216-237 (238)
323 KOG4423 GTP-binding protein-li 93.3 0.42 9.1E-06 37.2 6.7 79 94-173 98-189 (229)
324 cd04102 RabL3 RabL3 (Rab-like3 93.2 0.13 2.7E-06 40.2 4.0 61 73-134 53-144 (202)
325 PRK12726 flagellar biosynthesi 93.0 0.91 2E-05 39.2 9.1 144 3-168 225-383 (407)
326 PRK14494 putative molybdopteri 92.9 0.39 8.5E-06 38.3 6.4 72 2-83 19-95 (229)
327 PRK07560 elongation factor EF- 92.8 0.29 6.2E-06 45.4 6.3 60 73-132 86-152 (731)
328 PF00448 SRP54: SRP54-type pro 92.7 0.24 5.2E-06 38.5 4.9 144 3-168 20-181 (196)
329 PLN00116 translation elongatio 92.7 0.14 3.1E-06 48.2 4.2 57 76-132 100-163 (843)
330 PRK00771 signal recognition pa 92.5 0.74 1.6E-05 40.3 8.1 143 3-169 114-274 (437)
331 KOG1490 GTP-binding protein CR 91.9 0.24 5.1E-06 43.9 4.3 94 75-170 216-333 (620)
332 TIGR03172 probable selenium-de 91.6 1.6 3.6E-05 34.9 8.5 42 63-104 87-136 (232)
333 KOG0448 Mitofusin 1 GTPase, in 91.5 0.29 6.3E-06 44.7 4.5 88 75-162 207-310 (749)
334 PTZ00416 elongation factor 2; 91.4 0.22 4.7E-06 47.0 3.8 60 73-132 91-157 (836)
335 PF08438 MMR_HSR1_C: GTPase of 91.4 0.15 3.2E-06 36.1 2.1 33 125-162 1-33 (109)
336 KOG0410 Predicted GTP binding 91.2 0.11 2.3E-06 43.8 1.4 92 73-176 225-339 (410)
337 cd03110 Fer4_NifH_child This p 90.8 0.58 1.3E-05 35.1 5.1 75 71-149 90-170 (179)
338 KOG2423 Nucleolar GTPase [Gene 90.8 1.1 2.5E-05 38.8 7.1 80 95-177 214-299 (572)
339 PRK06731 flhF flagellar biosyn 90.1 0.61 1.3E-05 38.1 4.9 96 63-168 144-252 (270)
340 KOG0467 Translation elongation 90.0 0.53 1.1E-05 43.6 4.8 57 72-130 70-135 (887)
341 cd01852 AIG1 AIG1 (avrRpt2-ind 90.0 0.9 1.9E-05 34.7 5.6 101 73-177 48-183 (196)
342 PF06858 NOG1: Nucleolar GTP-b 89.2 0.24 5.2E-06 30.9 1.4 38 93-130 12-58 (58)
343 PRK14722 flhF flagellar biosyn 88.9 2.9 6.3E-05 35.8 8.3 89 72-168 214-322 (374)
344 KOG0468 U5 snRNP-specific prot 88.8 0.23 5E-06 45.5 1.6 39 94-132 220-262 (971)
345 smart00053 DYNc Dynamin, GTPas 88.2 1.1 2.5E-05 35.9 5.2 61 74-134 125-207 (240)
346 PRK14491 putative bifunctional 88.2 1.6 3.5E-05 39.6 6.7 78 1-83 27-114 (597)
347 PRK05703 flhF flagellar biosyn 88.0 3.7 7.9E-05 35.8 8.5 86 72-166 298-396 (424)
348 COG1419 FlhF Flagellar GTP-bin 87.9 3 6.5E-05 36.1 7.7 88 73-168 281-379 (407)
349 KOG0465 Mitochondrial elongati 87.8 1.4 3E-05 40.1 5.7 82 73-157 103-192 (721)
350 KOG3905 Dynein light intermedi 87.7 1.6 3.6E-05 36.9 5.9 56 118-173 221-285 (473)
351 PLN00023 GTP-binding protein; 87.7 0.4 8.6E-06 40.4 2.3 76 73-149 82-187 (334)
352 KOG2485 Conserved ATP/GTP bind 86.7 1.5 3.3E-05 36.6 5.1 78 94-174 46-127 (335)
353 COG0480 FusA Translation elong 86.3 0.85 1.8E-05 42.2 3.8 61 73-134 75-143 (697)
354 KOG1143 Predicted translation 86.2 2.8 6.1E-05 36.2 6.5 76 96-173 276-383 (591)
355 TIGR00490 aEF-2 translation el 86.1 0.8 1.7E-05 42.5 3.6 62 72-133 84-152 (720)
356 KOG0781 Signal recognition par 86.1 3 6.4E-05 37.0 6.7 100 69-173 462-585 (587)
357 KOG1954 Endocytosis/signaling 85.8 1.1 2.3E-05 38.6 3.8 68 75-145 148-235 (532)
358 cd04170 EF-G_bact Elongation f 85.3 1.5 3.2E-05 35.3 4.4 27 151-177 239-265 (268)
359 COG1763 MobB Molybdopterin-gua 85.0 2.9 6.3E-05 31.5 5.6 73 1-80 19-99 (161)
360 PF02606 LpxK: Tetraacyldisacc 84.5 9.3 0.0002 32.1 8.9 124 2-134 55-192 (326)
361 KOG0074 GTP-binding ADP-ribosy 83.5 0.36 7.7E-06 36.0 0.0 80 94-175 85-176 (185)
362 PRK12724 flagellar biosynthesi 82.4 3.3 7.2E-05 36.1 5.5 90 71-168 297-400 (432)
363 KOG1707 Predicted Ras related/ 82.2 1.2 2.7E-05 40.0 2.9 81 94-175 79-172 (625)
364 PF09439 SRPRB: Signal recogni 81.2 0.54 1.2E-05 36.2 0.3 62 73-134 48-127 (181)
365 cd01850 CDC_Septin CDC/Septin. 80.4 3 6.5E-05 34.0 4.4 64 95-160 115-184 (276)
366 KOG0077 Vesicle coat complex C 80.2 0.65 1.4E-05 35.5 0.4 80 94-175 87-190 (193)
367 PRK14723 flhF flagellar biosyn 79.2 3.2 6.9E-05 38.9 4.6 90 72-169 262-366 (767)
368 PRK12727 flagellar biosynthesi 78.0 4.5 9.8E-05 36.4 5.0 86 72-167 427-524 (559)
369 cd03116 MobB Molybdenum is an 77.6 12 0.00025 28.0 6.6 77 2-83 19-102 (159)
370 PRK12723 flagellar biosynthesi 77.1 6.1 0.00013 34.0 5.5 88 71-166 252-351 (388)
371 cd02034 CooC The accessory pro 77.1 11 0.00024 26.5 6.0 90 3-101 18-115 (116)
372 PRK10751 molybdopterin-guanine 76.6 14 0.0003 28.2 6.8 34 2-35 24-64 (173)
373 PF05783 DLIC: Dynein light in 75.2 6.4 0.00014 34.9 5.2 57 118-174 195-260 (472)
374 PRK14493 putative bifunctional 71.5 21 0.00045 29.2 7.1 75 1-83 18-97 (274)
375 PRK14490 putative bifunctional 70.6 15 0.00032 31.2 6.3 73 2-83 23-102 (369)
376 cd01886 EF-G Elongation factor 68.3 7.7 0.00017 31.5 3.9 26 151-176 241-266 (270)
377 PF00350 Dynamin_N: Dynamin fa 68.3 5.4 0.00012 29.1 2.8 56 73-129 100-168 (168)
378 KOG0463 GTP-binding protein GP 67.8 18 0.00038 31.5 6.0 54 118-173 272-353 (641)
379 PRK00652 lpxK tetraacyldisacch 67.2 29 0.00064 29.1 7.2 114 2-129 69-201 (325)
380 smart00275 G_alpha G protein a 66.4 35 0.00076 28.8 7.6 83 94-176 207-332 (342)
381 PF04670 Gtr1_RagA: Gtr1/RagA 64.1 11 0.00024 30.1 3.9 72 95-171 77-169 (232)
382 TIGR02836 spore_IV_A stage IV 63.7 35 0.00077 30.1 7.1 52 117-172 178-231 (492)
383 cd04169 RF3 RF3 subfamily. Pe 62.1 12 0.00027 30.3 4.0 26 151-176 238-263 (267)
384 PRK13505 formate--tetrahydrofo 61.7 21 0.00045 32.3 5.5 54 117-174 370-425 (557)
385 KOG1673 Ras GTPases [General f 61.2 18 0.0004 27.5 4.4 75 96-174 94-182 (205)
386 PF00455 DeoRC: DeoR C termina 60.5 29 0.00063 25.8 5.5 94 2-108 32-140 (161)
387 TIGR00682 lpxK tetraacyldisacc 60.0 32 0.0007 28.7 6.2 64 63-131 111-182 (311)
388 PF03205 MobB: Molybdopterin g 59.4 44 0.00095 24.2 6.2 33 2-35 18-58 (140)
389 PRK10411 DNA-binding transcrip 58.6 40 0.00086 26.9 6.3 113 3-128 107-233 (240)
390 KOG2486 Predicted GTPase [Gene 58.4 5.8 0.00013 32.9 1.4 76 98-173 223-311 (320)
391 PF08477 Miro: Miro-like prote 56.2 1.5 3.2E-05 30.1 -2.1 55 76-130 52-119 (119)
392 cd00066 G-alpha G protein alph 55.8 53 0.0011 27.3 6.8 83 94-176 184-309 (317)
393 PF00919 UPF0004: Uncharacteri 55.0 64 0.0014 22.0 6.1 53 118-172 34-89 (98)
394 PRK10906 DNA-binding transcrip 54.6 66 0.0014 25.8 7.0 112 3-128 105-232 (252)
395 PRK06995 flhF flagellar biosyn 54.5 39 0.00085 30.1 6.0 90 70-169 331-434 (484)
396 KOG0459 Polypeptide release fa 54.4 27 0.00058 30.6 4.8 50 121-170 219-278 (501)
397 PF10087 DUF2325: Uncharacteri 54.4 56 0.0012 21.9 5.7 55 114-176 42-96 (97)
398 PRK14495 putative molybdopteri 53.3 43 0.00092 29.6 6.0 35 1-35 18-59 (452)
399 PTZ00258 GTP-binding protein; 53.1 31 0.00066 29.8 5.1 44 120-164 221-266 (390)
400 KOG1487 GTP-binding protein DR 52.8 14 0.00031 30.5 2.8 47 118-173 230-276 (358)
401 PRK14721 flhF flagellar biosyn 51.6 40 0.00087 29.4 5.6 87 71-167 267-366 (420)
402 KOG0082 G-protein alpha subuni 48.4 44 0.00096 28.5 5.2 82 94-175 218-341 (354)
403 COG0012 Predicted GTPase, prob 46.3 35 0.00076 29.3 4.3 46 119-166 206-252 (372)
404 PRK10037 cell division protein 45.0 76 0.0016 25.0 6.0 57 72-131 116-175 (250)
405 TIGR00503 prfC peptide chain r 44.3 20 0.00044 32.1 2.7 27 151-177 248-274 (527)
406 PRK09802 DNA-binding transcrip 44.2 1.3E+02 0.0029 24.3 7.3 111 3-127 120-246 (269)
407 KOG0464 Elongation factor G [T 41.3 50 0.0011 29.2 4.5 60 74-134 102-169 (753)
408 TIGR01007 eps_fam capsular exo 41.0 46 0.001 25.2 4.0 61 72-132 126-193 (204)
409 PF01656 CbiA: CobQ/CobB/MinD/ 40.5 48 0.001 24.5 4.0 61 72-134 93-163 (195)
410 PF06564 YhjQ: YhjQ protein; 40.4 55 0.0012 26.4 4.4 102 63-170 107-209 (243)
411 PRK00007 elongation factor G; 39.9 38 0.00083 31.4 3.9 27 150-176 252-278 (693)
412 cd02038 FleN-like FleN is a me 38.2 35 0.00076 24.4 2.8 58 74-132 45-110 (139)
413 TIGR00347 bioD dethiobiotin sy 37.8 49 0.0011 24.1 3.6 12 72-83 98-109 (166)
414 KOG1249 Predicted GTPases [Gen 37.4 24 0.00053 31.7 2.1 77 97-175 113-208 (572)
415 PF07846 Metallothio_Cad: Meta 37.0 16 0.00034 17.7 0.5 6 45-50 15-20 (21)
416 PF14331 ImcF-related_N: ImcF- 36.9 57 0.0012 26.4 4.1 18 118-135 68-85 (266)
417 COG3596 Predicted GTPase [Gene 36.9 1.7E+02 0.0037 24.4 6.7 103 74-176 87-220 (296)
418 TIGR02016 BchX chlorophyllide 34.1 54 0.0012 27.0 3.6 34 72-105 121-158 (296)
419 CHL00175 minD septum-site dete 33.2 52 0.0011 26.4 3.3 33 73-106 126-160 (281)
420 COG4536 CorB Putative Mg2+ and 30.0 52 0.0011 28.5 2.8 19 4-22 290-308 (423)
421 TIGR03499 FlhF flagellar biosy 30.0 1.3E+02 0.0029 24.4 5.2 20 3-22 213-235 (282)
422 TIGR03018 pepcterm_TyrKin exop 29.6 1.1E+02 0.0024 23.4 4.5 40 66-106 141-183 (207)
423 smart00010 small_GTPase Small 29.3 7.5 0.00016 26.4 -2.0 64 94-167 46-115 (124)
424 PF07015 VirC1: VirC1 protein; 28.6 99 0.0021 24.8 4.1 92 72-171 82-187 (231)
425 KOG0096 GTPase Ran/TC4/GSP1 (n 28.5 21 0.00046 28.0 0.2 77 95-175 83-166 (216)
426 COG4108 PrfC Peptide chain rel 28.4 74 0.0016 28.3 3.5 52 95-146 105-161 (528)
427 PRK09601 GTP-binding protein Y 28.1 1.1E+02 0.0025 26.1 4.6 39 120-162 200-241 (364)
428 TIGR01969 minD_arch cell divis 28.0 77 0.0017 24.6 3.4 60 72-132 107-173 (251)
429 TIGR00484 EF-G translation elo 27.9 78 0.0017 29.3 3.9 26 151-176 252-277 (689)
430 KOG4584 Uncharacterized conser 27.6 2.5E+02 0.0054 23.7 6.2 28 4-31 190-226 (348)
431 PRK13507 formate--tetrahydrofo 26.7 1.3E+02 0.0028 27.5 4.8 55 118-176 400-456 (587)
432 cd02040 NifH NifH gene encodes 26.7 82 0.0018 24.9 3.4 35 72-106 115-153 (270)
433 cd02117 NifH_like This family 26.6 87 0.0019 24.0 3.4 34 72-106 115-153 (212)
434 COG0694 Thioredoxin-like prote 25.8 69 0.0015 21.9 2.4 32 40-77 45-79 (93)
435 COG0621 MiaB 2-methylthioadeni 25.1 1.5E+02 0.0032 26.1 4.8 53 118-171 38-90 (437)
436 TIGR01968 minD_bact septum sit 24.8 73 0.0016 24.8 2.8 59 72-131 110-175 (261)
437 COG1349 GlpR Transcriptional r 24.5 3.7E+02 0.008 21.5 6.8 94 2-108 104-212 (253)
438 TIGR02845 spore_V_AD stage V s 24.4 1.2E+02 0.0026 25.6 4.0 64 15-87 224-306 (327)
439 PF01133 ER: Enhancer of rudim 23.8 97 0.0021 21.6 2.8 33 139-177 33-65 (102)
440 COG3688 Predicted RNA-binding 23.8 3.3E+02 0.0072 20.7 5.9 62 96-162 49-110 (173)
441 PRK12404 stage V sporulation p 23.6 1.3E+02 0.0028 25.5 4.1 65 15-88 228-312 (334)
442 cd00477 FTHFS Formyltetrahydro 23.4 1.5E+02 0.0032 26.8 4.5 55 118-176 355-411 (524)
443 KOG1486 GTP-binding protein DR 23.2 1.9E+02 0.0041 24.0 4.7 44 121-173 240-283 (364)
444 PRK08304 stage V sporulation p 23.1 1.2E+02 0.0027 25.7 3.8 64 15-87 230-313 (337)
445 PRK14338 (dimethylallyl)adenos 23.1 1.3E+02 0.0027 26.5 4.1 50 118-169 55-109 (459)
446 TIGR03826 YvyF flagellar opero 22.2 47 0.001 24.3 1.1 38 137-175 30-69 (137)
447 KOG1766 Enhancer of rudimentar 21.8 1.4E+02 0.0031 20.5 3.2 32 140-177 34-65 (104)
448 PF13811 DUF4186: Domain of un 21.6 37 0.00081 23.9 0.4 35 7-50 42-77 (111)
449 PF00503 G-alpha: G-protein al 21.3 1.1E+02 0.0024 26.0 3.3 102 73-176 235-388 (389)
450 PRK03094 hypothetical protein; 21.1 1E+02 0.0023 20.4 2.5 54 19-84 6-66 (80)
451 PRK13231 nitrogenase reductase 21.0 1.3E+02 0.0028 23.8 3.5 35 72-106 112-150 (264)
452 PRK10818 cell division inhibit 21.0 1.3E+02 0.0028 23.9 3.5 35 72-107 112-148 (270)
453 COG4108 PrfC Peptide chain rel 20.9 71 0.0015 28.4 2.0 25 153-177 251-275 (528)
454 TIGR03602 streptolysinS bacter 20.7 47 0.001 19.9 0.7 9 40-48 18-26 (56)
455 PRK14340 (dimethylallyl)adenos 20.7 1.9E+02 0.0042 25.2 4.8 49 119-170 42-96 (445)
456 PRK11573 hypothetical protein; 20.5 77 0.0017 27.5 2.2 24 2-25 274-300 (413)
457 PF04548 AIG1: AIG1 family; I 20.3 2E+02 0.0043 22.1 4.4 102 72-177 47-185 (212)
458 PRK03525 crotonobetainyl-CoA:c 20.2 1.5E+02 0.0032 25.6 3.9 86 68-159 32-122 (405)
No 1
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=100.00 E-value=3.5e-32 Score=207.82 Aligned_cols=166 Identities=45% Similarity=0.629 Sum_probs=145.9
Q ss_pred CHHHHHHhhcCCcEEEEEecCCCchhHHHHHH-cCCCCccceeecccCC-CcccccccccccCHhHHHhhHhhCC-CCEE
Q 030407 1 MLALCKFLRDKYSLAAVTNDIFTKEDGEFLMR-NGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNLFK-ADLL 77 (178)
Q Consensus 1 ~~~~~~~~~~~~~vaVI~nd~g~~iD~~li~~-~~~~~~~~~~~l~~Gc-Cc~l~i~~dl~~~l~~l~~l~~~~~-~d~i 77 (178)
++++++.|++++++|||.||.-+.-|++++.+ .|. +++...+|- | |+ |.+..+.++.+|...++ .|++
T Consensus 30 ie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~----~i~~v~TG~~C-H~----da~m~~~ai~~l~~~~~~~Dll 100 (202)
T COG0378 30 IEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGE----PIIGVETGKGC-HL----DASMNLEAIEELVLDFPDLDLL 100 (202)
T ss_pred HHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCC----eeEEeccCCcc-CC----cHHHHHHHHHHHhhcCCcCCEE
Confidence 47889999888999999999999999999988 555 899999995 7 86 33333488888876654 7999
Q ss_pred EEeCCcchhhhcccccccc-eEEEEEeCCCCCCCCcC-CCCCCCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCE
Q 030407 78 LCESGGDNLAANFSRELAD-YIIYIIDVSGGDKIPRK-GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPF 155 (178)
Q Consensus 78 iiEttG~~~~~~~~~~~ad-~~I~VvD~~~~~~~~~~-~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i 155 (178)
|||+.| |+++++++++.+ ..|+|+|+++|++.+.+ +|..++ ||++||||+||++.+..+++.+.+..++.||.+|+
T Consensus 101 ~iEs~G-NL~~~~sp~L~d~~~v~VidvteGe~~P~K~gP~i~~-aDllVInK~DLa~~v~~dlevm~~da~~~np~~~i 178 (202)
T COG0378 101 FIESVG-NLVCPFSPDLGDHLRVVVIDVTEGEDIPRKGGPGIFK-ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPI 178 (202)
T ss_pred EEecCc-ceecccCcchhhceEEEEEECCCCCCCcccCCCceeE-eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCE
Confidence 999999 999999998876 99999999999999998 655555 99999999999999778889999999999999999
Q ss_pred EEEecccCCCHHHHHHHHhhhh
Q 030407 156 IFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 156 ~~~SA~~g~gi~el~~~l~~~~ 177 (178)
+++|++||+|+++|++++...+
T Consensus 179 i~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 179 IFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred EEEeCCCCcCHHHHHHHHHhhc
Confidence 9999999999999999998653
No 2
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=233.81 Aligned_cols=158 Identities=22% Similarity=0.242 Sum_probs=121.4
Q ss_pred HHHHHHhhcCCcEEEEEecCC-CchhH-HHHHHcCCCCccceeecccCC-CcccccccccccCHhHHHhhHhhCCCCEEE
Q 030407 2 LALCKFLRDKYSLAAVTNDIF-TKEDG-EFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNLFKADLLL 78 (178)
Q Consensus 2 ~~~~~~~~~~~~vaVI~nd~g-~~iD~-~li~~~~~~~~~~~~~l~~Gc-Cc~l~i~~dl~~~l~~l~~l~~~~~~d~ii 78 (178)
.+++++.. ++|+|||+|||| ++||+ .++...+. ++.||+||| ||++ |+|+...+..|.+ . +..||+|+
T Consensus 19 ~~lL~~~~-g~kiAVIVNEfGEvgID~~~~l~~~~e----~~~El~nGCICCT~--r~dl~~~~~~L~~-~-~~~~D~iv 89 (323)
T COG0523 19 NHLLANRD-GKKIAVIVNEFGEVGIDGGALLSDTGE----EVVELTNGCICCTV--RDDLLPALERLLR-R-RDRPDRLV 89 (323)
T ss_pred HHHHhccC-CCcEEEEEecCccccccCCCccccCCc----cEEEeCCceEEEec--cchhHHHHHHHHh-c-cCCCCEEE
Confidence 44555444 699999999999 99995 77776554 799999999 9984 8888655555544 2 44699999
Q ss_pred EeCCcchh----hhcccc--cc-----cceEEEEEeCCCCCCCC----cCCCCCCCceeEEEEecCCCCCchhHhHHHHH
Q 030407 79 CESGGDNL----AANFSR--EL-----ADYIIYIIDVSGGDKIP----RKGGPGITQADLLVINKTDLASAIGADLAVME 143 (178)
Q Consensus 79 iEttG~~~----~~~~~~--~~-----ad~~I~VvD~~~~~~~~----~~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~ 143 (178)
|||||++. +.++.. .. .|.+|+|||+.+..... ..+..|+++||+|++||+|++++ ++++.++
T Consensus 90 IEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD~ivlNK~Dlv~~--~~l~~l~ 167 (323)
T COG0523 90 IETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFADVIVLNKTDLVDA--EELEALE 167 (323)
T ss_pred EeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCcEEEEecccCCCH--HHHHHHH
Confidence 99999532 222221 11 38899999998865432 23557999999999999999999 7899999
Q ss_pred HHHHhcCCCCCEEEEecccCCCHHHHHH
Q 030407 144 RDALRMRDGGPFIFAQVGWVIGIIFTLS 171 (178)
Q Consensus 144 ~~l~~~np~a~i~~~SA~~g~gi~el~~ 171 (178)
++++++||.|+++.+|. .+.+..+++.
T Consensus 168 ~~l~~lnp~A~i~~~~~-~~~~~~~ll~ 194 (323)
T COG0523 168 ARLRKLNPRARIIETSY-GDVDLAELLD 194 (323)
T ss_pred HHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence 99999999999999997 5566666654
No 3
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.97 E-value=8.3e-30 Score=207.47 Aligned_cols=166 Identities=22% Similarity=0.186 Sum_probs=135.6
Q ss_pred CHHHHHHhhcCCcEEEEEecCCCchhHHHHHHcCCCCccceeecccCCCcccccccccccCHhHHHhhHhhCCCCEEEEe
Q 030407 1 MLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE 80 (178)
Q Consensus 1 ~~~~~~~~~~~~~vaVI~nd~g~~iD~~li~~~~~~~~~~~~~l~~GcCc~l~i~~dl~~~l~~l~~l~~~~~~d~iiiE 80 (178)
|+++++.+..+.+++||.||+++..|+.+++..|+ +++++++||+||+. +.++. .++..|. ..+.|++|||
T Consensus 121 l~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~----pvvqi~tG~~Chl~-a~mv~---~Al~~L~-~~~~d~liIE 191 (290)
T PRK10463 121 LTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGT----PAIQVNTGKGCHLD-AQMIA---DAAPRLP-LDDNGILFIE 191 (290)
T ss_pred HHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCC----cEEEecCCCCCcCc-HHHHH---HHHHHHh-hcCCcEEEEE
Confidence 35667777766899999999995459999998887 79999999944441 33332 6666664 5678999999
Q ss_pred CCcchhhhcccccc-cceEEEEEeCCCCCCCCcCCCCCCCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEe
Q 030407 81 SGGDNLAANFSREL-ADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQ 159 (178)
Q Consensus 81 ttG~~~~~~~~~~~-ad~~I~VvD~~~~~~~~~~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~S 159 (178)
++| +++.|...++ .+..++++++.++++.+.+++.|++.||++|+||+||++....+++.+.+.++++||.++++++|
T Consensus 192 nvG-nLvcPa~fdlge~~~v~vlsV~eg~dkplKyp~~f~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vS 270 (290)
T PRK10463 192 NVG-NLVCPASFDLGEKHKVAVLSVTEGEDKPLKYPHMFAAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILIS 270 (290)
T ss_pred CCC-CccCCCccchhhceeEEEEECccccccchhccchhhcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEE
Confidence 999 6666554332 45678999999998888889999999999999999999853367888999999999999999999
Q ss_pred cccCCCHHHHHHHHhhh
Q 030407 160 VGWVIGIIFTLSITHYI 176 (178)
Q Consensus 160 A~~g~gi~el~~~l~~~ 176 (178)
|++|+|+++|+++|.+.
T Consensus 271 A~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 271 ATSGEGMDQWLNWLETQ 287 (290)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 99999999999999864
No 4
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.97 E-value=5.8e-30 Score=199.66 Aligned_cols=173 Identities=54% Similarity=0.811 Sum_probs=139.1
Q ss_pred HHHHHHhhcCCcEEEEEecCCCchhHHHHHHcCCCCccceeec-ccCC-CcccccccccccCHhHHHhhHhh-CCCCEEE
Q 030407 2 LALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV-ETGG-CPHAAIREDISINLGPLEELSNL-FKADLLL 78 (178)
Q Consensus 2 ~~~~~~~~~~~~vaVI~nd~g~~iD~~li~~~~~~~~~~~~~l-~~Gc-Cc~l~i~~dl~~~l~~l~~l~~~-~~~d~ii 78 (178)
.++++.+....+++++.||++...|+.++.+.+..+.++++.+ .+|| ||. +|+|+...+.+|.++..+ .++|+|+
T Consensus 19 ~~l~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~L~~l~~~~~~~D~ii 96 (199)
T TIGR00101 19 EALTRALRQKYQLAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTA--IREDASMNLEAVAEMEARFPPLEMVF 96 (199)
T ss_pred HHHHHhhCcCCcEEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccce--eccCHHHHHHHHHHHHhcCCCCCEEE
Confidence 3455665555789999999997789998877775444456665 6788 665 588876656777766533 3699999
Q ss_pred EeCCcchhhhcccccccceEEEEEeCCCCCCCCcCCCCCCCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEE
Q 030407 79 CESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFA 158 (178)
Q Consensus 79 iEttG~~~~~~~~~~~ad~~I~VvD~~~~~~~~~~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~ 158 (178)
|||+|.++.+++.+..++.+|+|+|+.+++..+..+..|+..||++++||+|+.+...++++.+.+.++++||.++++++
T Consensus 97 IEt~G~~l~~~~~~~l~~~~i~vvD~~~~~~~~~~~~~qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 176 (199)
T TIGR00101 97 IESGGDNLSATFSPELADLTIFVIDVAAGDKIPRKGGPGITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFT 176 (199)
T ss_pred EECCCCCcccccchhhhCcEEEEEEcchhhhhhhhhHhHhhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEE
Confidence 99999777777766668999999999998876555567999999999999999874336788889999999999999999
Q ss_pred ecccCCCHHHHHHHHhhh
Q 030407 159 QVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 159 SA~~g~gi~el~~~l~~~ 176 (178)
||++|+|+++|++++.+.
T Consensus 177 Sa~~g~gi~el~~~i~~~ 194 (199)
T TIGR00101 177 NLKTKEGLDTVIDWIEHY 194 (199)
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999998764
No 5
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=99.96 E-value=4.1e-30 Score=197.12 Aligned_cols=146 Identities=25% Similarity=0.343 Sum_probs=105.5
Q ss_pred CHHHHHHhhcCCcEEEEEecCC-CchhHHHHHHcCCCCccceeecccCC-CcccccccccccCHhHHHhhHhhC--CCCE
Q 030407 1 MLALCKFLRDKYSLAAVTNDIF-TKEDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNLF--KADL 76 (178)
Q Consensus 1 ~~~~~~~~~~~~~vaVI~nd~g-~~iD~~li~~~~~~~~~~~~~l~~Gc-Cc~l~i~~dl~~~l~~l~~l~~~~--~~d~ 76 (178)
|.++++...+++|+|||+|||| +++|+.++++.|. .++++++|| ||++ ++|+. .++.++.+.+ +||+
T Consensus 17 i~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~----~v~~l~~gcicc~~--~~~~~---~~l~~l~~~~~~~~d~ 87 (178)
T PF02492_consen 17 INHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGV----PVVELNNGCICCTL--RDDLV---EALRRLLREYEERPDR 87 (178)
T ss_dssp HHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-----EEEEECTTTESS-T--TS-HH---HHHHHHCCCCHGC-SE
T ss_pred HHHHHHHhcCCceeEEEEccccccccchhhhcccce----EEEEecCCCccccc--HHHHH---HHHHHHHHhcCCCcCE
Confidence 3566663445699999999999 9999999998776 799999999 9985 55553 6677777677 8999
Q ss_pred EEEeCCcchhhhcc---cc-----cccceEEEEEeCCCCCC---CCcCCCCCCCceeEEEEecCCCCCchhH-hHHHHHH
Q 030407 77 LLCESGGDNLAANF---SR-----ELADYIIYIIDVSGGDK---IPRKGGPGITQADLLVINKTDLASAIGA-DLAVMER 144 (178)
Q Consensus 77 iiiEttG~~~~~~~---~~-----~~ad~~I~VvD~~~~~~---~~~~~~~qi~~adiiviNK~Dl~~~~~~-~~~~~~~ 144 (178)
||||++|++-..++ .+ -..+.+|+|+|+.+... ....+.+|++.||+|++||+|++++ + .++++++
T Consensus 88 IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~ADvIvlnK~D~~~~--~~~i~~~~~ 165 (178)
T PF02492_consen 88 IIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFADVIVLNKIDLVSD--EQKIERVRE 165 (178)
T ss_dssp EEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-SEEEEE-GGGHHH--H--HHHHHH
T ss_pred EEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcCEEEEeccccCCh--hhHHHHHHH
Confidence 99999994322222 10 11378999999976522 2223456899999999999999988 6 4589999
Q ss_pred HHHhcCCCCCEEE
Q 030407 145 DALRMRDGGPFIF 157 (178)
Q Consensus 145 ~l~~~np~a~i~~ 157 (178)
.++++||.++|+.
T Consensus 166 ~ir~lnp~a~Iv~ 178 (178)
T PF02492_consen 166 MIRELNPKAPIVQ 178 (178)
T ss_dssp HHHHH-TTSEEE-
T ss_pred HHHHHCCCCEEeC
Confidence 9999999999873
No 6
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=99.95 E-value=3.4e-28 Score=201.72 Aligned_cols=144 Identities=19% Similarity=0.302 Sum_probs=107.7
Q ss_pred HHHHHHhhcCCcEEEEEecCC-CchhHHHHHHcCCCCccceeecccCC-CcccccccccccCHhHHHhhHhh-----CCC
Q 030407 2 LALCKFLRDKYSLAAVTNDIF-TKEDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNL-----FKA 74 (178)
Q Consensus 2 ~~~~~~~~~~~~vaVI~nd~g-~~iD~~li~~~~~~~~~~~~~l~~Gc-Cc~l~i~~dl~~~l~~l~~l~~~-----~~~ 74 (178)
++++++ ..++|+|||+|||| +++|+.++.+.+. .+.+|+||| ||++ ++||...+ .++... .+|
T Consensus 22 ~~ll~~-~~~~riaVi~NEfG~v~iD~~ll~~~~~----~v~eL~~GCiCCs~--~~~l~~~l---~~l~~~~~~~~~~~ 91 (318)
T PRK11537 22 RHILNE-QHGYKIAVIENEFGEVSVDDQLIGDRAT----QIKTLTNGCICCSR--SNELEDAL---LDLLDNLDKGNIQF 91 (318)
T ss_pred HHHHhc-ccCCcccccccCcCCccccHHHHhCcCc----eEEEECCCEEEEcc--CchHHHHH---HHHHHHHhccCCCC
Confidence 344443 23589999999999 9999999975443 789999999 9985 67776444 444322 269
Q ss_pred CEEEEeCCcch----hhhccc--cc-----ccceEEEEEeCCCCCCCCcC---CCCCCCceeEEEEecCCCCCchhHhHH
Q 030407 75 DLLLCESGGDN----LAANFS--RE-----LADYIIYIIDVSGGDKIPRK---GGPGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 75 d~iiiEttG~~----~~~~~~--~~-----~ad~~I~VvD~~~~~~~~~~---~~~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
|+|+|||||++ +...+. +. ..+.+|+|||+.++...... ...|++.||+||+||+|++++ . +
T Consensus 92 d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD~IvlnK~Dl~~~--~--~ 167 (318)
T PRK11537 92 DRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVAGE--A--E 167 (318)
T ss_pred CEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhCCEEEEeccccCCH--H--H
Confidence 99999999963 222221 11 13789999999876543322 235899999999999999976 4 6
Q ss_pred HHHHHHHhcCCCCCEEEEe
Q 030407 141 VMERDALRMRDGGPFIFAQ 159 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~S 159 (178)
++.+.++++||.|+++.++
T Consensus 168 ~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 168 KLRERLARINARAPVYTVV 186 (318)
T ss_pred HHHHHHHHhCCCCEEEEec
Confidence 8899999999999999876
No 7
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=99.94 E-value=8.2e-27 Score=195.14 Aligned_cols=153 Identities=24% Similarity=0.249 Sum_probs=113.5
Q ss_pred CCcEEEEEecCC-CchhHHHHHHcCCC--CccceeecccCC-CcccccccccccCHhHHHhhHh-hCCCCEEEEeCCcch
Q 030407 11 KYSLAAVTNDIF-TKEDGEFLMRNGAL--PEERIRAVETGG-CPHAAIREDISINLGPLEELSN-LFKADLLLCESGGDN 85 (178)
Q Consensus 11 ~~~vaVI~nd~g-~~iD~~li~~~~~~--~~~~~~~l~~Gc-Cc~l~i~~dl~~~l~~l~~l~~-~~~~d~iiiEttG~~ 85 (178)
++|+|||+|||| ++||+.+++..+.. ..+.+++|+||| ||++ ++||. .++.++.. ..+||+|+|||||++
T Consensus 30 ~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~--~~dl~---~~l~~l~~~~~~~d~IvIEtsG~a 104 (341)
T TIGR02475 30 GRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTV--ADDFI---PTMTKLLARRQRPDHILIETSGLA 104 (341)
T ss_pred CCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccC--cHHHH---HHHHHHHhccCCCCEEEEeCCCCC
Confidence 589999999999 99999999765431 123689999999 9985 66664 56666654 467999999999963
Q ss_pred ----hhhccc-cc-----ccceEEEEEeCCCCCCC---------------------C----cCCCCCCCceeEEEEecCC
Q 030407 86 ----LAANFS-RE-----LADYIIYIIDVSGGDKI---------------------P----RKGGPGITQADLLVINKTD 130 (178)
Q Consensus 86 ----~~~~~~-~~-----~ad~~I~VvD~~~~~~~---------------------~----~~~~~qi~~adiiviNK~D 130 (178)
++..+. +. ..+.+|+|||+.+.... . ..+..|+++||+|++||+|
T Consensus 105 ~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi~~AD~IvlnK~D 184 (341)
T TIGR02475 105 LPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQLACADLVILNKAD 184 (341)
T ss_pred CHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHHHhCCEEEEeccc
Confidence 233332 11 13889999999754210 0 0113589999999999999
Q ss_pred CCCchhHhHHHHHHHHHhcCCC-CCEEEEecccCCCHHHHHH
Q 030407 131 LASAIGADLAVMERDALRMRDG-GPFIFAQVGWVIGIIFTLS 171 (178)
Q Consensus 131 l~~~~~~~~~~~~~~l~~~np~-a~i~~~SA~~g~gi~el~~ 171 (178)
++++ ++++.+++.++++||. ++++.++ ........+++
T Consensus 185 l~~~--~~l~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~ 223 (341)
T TIGR02475 185 LLDA--AGLARVRAEIAAELPRAVKIVEAS-HGEVDARVLLG 223 (341)
T ss_pred cCCH--HHHHHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhC
Confidence 9999 8999999999998875 5888876 33455666554
No 8
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=99.94 E-value=1.1e-27 Score=193.09 Aligned_cols=152 Identities=19% Similarity=0.189 Sum_probs=115.0
Q ss_pred CCcEEEEEecCC--CchhHHHHHHcCC-CCccceeecccCC-CcccccccccccCHhHHHhhHhh-CCCCEEEEeCCcch
Q 030407 11 KYSLAAVTNDIF--TKEDGEFLMRNGA-LPEERIRAVETGG-CPHAAIREDISINLGPLEELSNL-FKADLLLCESGGDN 85 (178)
Q Consensus 11 ~~~vaVI~nd~g--~~iD~~li~~~~~-~~~~~~~~l~~Gc-Cc~l~i~~dl~~~l~~l~~l~~~-~~~d~iiiEttG~~ 85 (178)
++|+|||.|||| +.++..++.+.+. ..-+...+|+||| ||++ |+++. +++.++.++ .+||+|++||||++
T Consensus 83 gKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtV--k~~gv---raie~lvqkkGkfD~IllETTGlA 157 (391)
T KOG2743|consen 83 GKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTV--KDNGV---RAIENLVQKKGKFDHILLETTGLA 157 (391)
T ss_pred CceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEe--cchHH---HHHHHHHhcCCCcceEEEeccCCC
Confidence 399999999999 5899999876522 1125678999999 9986 55553 777777654 46999999999953
Q ss_pred ----hhhcccccc-------cceEEEEEeCCCCCCCCc-----C----CCCCCCceeEEEEecCCCCCchhHhHHHHHHH
Q 030407 86 ----LAANFSREL-------ADYIIYIIDVSGGDKIPR-----K----GGPGITQADLLVINKTDLASAIGADLAVMERD 145 (178)
Q Consensus 86 ----~~~~~~~~~-------ad~~I~VvD~~~~~~~~~-----~----~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~ 145 (178)
++.+|+.+. .|++|+|+|+.+...... . .-.|+++||.|++||+||+++ +++..+++.
T Consensus 158 nPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA~AD~II~NKtDli~~--e~~~~l~q~ 235 (391)
T KOG2743|consen 158 NPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIALADRIIMNKTDLVSE--EEVKKLRQR 235 (391)
T ss_pred CcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHhhhheeeeccccccCH--HHHHHHHHH
Confidence 445565421 389999999987543221 1 224899999999999999999 999999999
Q ss_pred HHhcCCCCCEEEEecccCCCHHHHH
Q 030407 146 ALRMRDGGPFIFAQVGWVIGIIFTL 170 (178)
Q Consensus 146 l~~~np~a~i~~~SA~~g~gi~el~ 170 (178)
++.+|.-|++++|-- ....+++++
T Consensus 236 I~~INslA~m~~Tky-~~vdlsnvL 259 (391)
T KOG2743|consen 236 IRSINSLAQMIETKY-SRVDLSNVL 259 (391)
T ss_pred HHHhhhHHHhhhhhh-ccccHHHhc
Confidence 999999999988752 234455554
No 9
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.94 E-value=7.5e-26 Score=177.19 Aligned_cols=165 Identities=31% Similarity=0.364 Sum_probs=124.6
Q ss_pred HHHHHHhhcCCcEEEEEecCCCchhHHHHHHcCCCCccceeecccCC-CcccccccccccCHhHHHhhHhhCCCCEEEEe
Q 030407 2 LALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNLFKADLLLCE 80 (178)
Q Consensus 2 ~~~~~~~~~~~~vaVI~nd~g~~iD~~li~~~~~~~~~~~~~l~~Gc-Cc~l~i~~dl~~~l~~l~~l~~~~~~d~iiiE 80 (178)
+++++++..+.++||+.||++.++|..++++.|. .++++.+|| ||.. ..++. .++..+. ..++|+||||
T Consensus 40 ~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~----~~~~l~~gcic~~~--~~~~~---~~l~~~~-~~~~d~IiIE 109 (207)
T TIGR00073 40 EKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGA----PAIQINTGKECHLD--AHMVA---HALEDLP-LDDIDLLFIE 109 (207)
T ss_pred HHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCC----cEEEEcCCCcccCC--hHHHH---HHHHHhc-cCCCCEEEEe
Confidence 5666766555899999999998899999988776 789999999 7732 12221 4444333 3478999999
Q ss_pred CCcchhhhcccc-cccceEEEEEeCCCCCCCCcCCCCCCCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEe
Q 030407 81 SGGDNLAANFSR-ELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQ 159 (178)
Q Consensus 81 ttG~~~~~~~~~-~~ad~~I~VvD~~~~~~~~~~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~S 159 (178)
|+| .+..+... ...+..++|+|+.+++.....++.++..|+++++||+|+.++...+.+.+.+.+++.+|.++++++|
T Consensus 110 t~G-~l~~~~~~~~~~~~~i~Vvd~~~~d~~~~~~~~~~~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~S 188 (207)
T TIGR00073 110 NVG-NLVCPADFDLGEHMRVVLLSVTEGDDKPLKYPGMFKEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMS 188 (207)
T ss_pred cCC-CcCCCcccccccCeEEEEEecCcccchhhhhHhHHhhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEE
Confidence 999 33323222 1246678899998877655555667788999999999998642234667778888889999999999
Q ss_pred cccCCCHHHHHHHHhhhh
Q 030407 160 VGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 160 A~~g~gi~el~~~l~~~~ 177 (178)
|++|+|++++++++.+.+
T Consensus 189 a~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 189 LKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred CCCCCCHHHHHHHHHHhh
Confidence 999999999999998754
No 10
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.87 E-value=2.6e-21 Score=156.58 Aligned_cols=168 Identities=19% Similarity=0.093 Sum_probs=125.6
Q ss_pred HHHHHHhhcC-CcEEEEEecCCCch-------hHHHHHHcCCCCccceeecccCC-CcccccccccccCHhHHHhhHhhC
Q 030407 2 LALCKFLRDK-YSLAAVTNDIFTKE-------DGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNLF 72 (178)
Q Consensus 2 ~~~~~~~~~~-~~vaVI~nd~g~~i-------D~~li~~~~~~~~~~~~~l~~Gc-Cc~l~i~~dl~~~l~~l~~l~~~~ 72 (178)
.++++.|.++ +|||||.-|++++. |..+|+.....++.+++++++++ --.+ +........+.+..
T Consensus 69 ~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl------S~at~~~i~~ldAa 142 (323)
T COG1703 69 EALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL------SRATREAIKLLDAA 142 (323)
T ss_pred HHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh------hHHHHHHHHHHHhc
Confidence 5678888664 99999999999654 88899887655677999999988 3333 43443333455688
Q ss_pred CCCEEEEeCCcchhhhcccccccceEEEEEeCCCCCCCCcCCCCCCCceeEEEEecCCCCCchhHhHHHHHHHHHhc---
Q 030407 73 KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRM--- 149 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~~~~~~~ad~~I~VvD~~~~~~~~~~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~--- 149 (178)
+||+|||||+|+..........+|.+++|.-+..|++.+......++.||++|+||.|+.... .....+...++..
T Consensus 143 G~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaDi~vINKaD~~~A~-~a~r~l~~al~~~~~~ 221 (323)
T COG1703 143 GYDVIIVETVGVGQSEVDIANMADTFLVVMIPGAGDDLQGIKAGIMEIADIIVINKADRKGAE-KAARELRSALDLLREV 221 (323)
T ss_pred CCCEEEEEecCCCcchhHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhheeeEeccChhhHH-HHHHHHHHHHHhhccc
Confidence 999999999997766555445679999999999999888877888999999999999975441 1111222222222
Q ss_pred ---C-CCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 150 ---R-DGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 150 ---n-p~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+ ...|++.|||.+|+|+++|++.+...
T Consensus 222 ~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h 252 (323)
T COG1703 222 WRENGWRPPVVTTSALEGEGIDELWDAIEDH 252 (323)
T ss_pred ccccCCCCceeEeeeccCCCHHHHHHHHHHH
Confidence 1 23599999999999999999988753
No 11
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.86 E-value=9.9e-22 Score=156.85 Aligned_cols=168 Identities=20% Similarity=0.108 Sum_probs=113.4
Q ss_pred HHHHHHhhc-CCcEEEEEecCCCch-------hHHHHHHcCCCCccceeecccCC-CcccccccccccCHhHHHhhHhhC
Q 030407 2 LALCKFLRD-KYSLAAVTNDIFTKE-------DGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNLF 72 (178)
Q Consensus 2 ~~~~~~~~~-~~~vaVI~nd~g~~i-------D~~li~~~~~~~~~~~~~l~~Gc-Cc~l~i~~dl~~~l~~l~~l~~~~ 72 (178)
.++++++.+ ++|||||.-|+++++ |..+|+.....++.+++++.+++ .-.+ +........+++..
T Consensus 47 ~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl------s~~t~~~v~ll~aa 120 (266)
T PF03308_consen 47 DALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL------SRATRDAVRLLDAA 120 (266)
T ss_dssp HHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH------HHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc------cHhHHHHHHHHHHc
Confidence 567777765 499999999999654 88888765433456899999888 3333 33333334566688
Q ss_pred CCCEEEEeCCcchhhhcccccccceEEEEEeCCCCCCCCcCCCCCCCceeEEEEecCCCCCchhHhHHHHHHHHHhcCC-
Q 030407 73 KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRD- 151 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~~~~~~~ad~~I~VvD~~~~~~~~~~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np- 151 (178)
+||+|||||+|+..........+|.+++|+-+..|++.+......++.||++|+||.|+.... .....++..++-..+
T Consensus 121 G~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaDi~vVNKaD~~gA~-~~~~~l~~~l~l~~~~ 199 (266)
T PF03308_consen 121 GFDVIIIETVGVGQSEVDIADMADTVVLVLVPGLGDEIQAIKAGIMEIADIFVVNKADRPGAD-RTVRDLRSMLHLLRER 199 (266)
T ss_dssp T-SEEEEEEESSSTHHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-SEEEEE--SHHHHH-HHHHHHHHHHHHCSTS
T ss_pred CCCEEEEeCCCCCccHHHHHHhcCeEEEEecCCCccHHHHHhhhhhhhccEEEEeCCChHHHH-HHHHHHHHHHhhcccc
Confidence 999999999997776555555689999999999999998888888999999999999965441 112334444432221
Q ss_pred ----CCCEEEEecccCCCHHHHHHHHhhh
Q 030407 152 ----GGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 152 ----~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
..||+.|||.+|+||++|++.+.+.
T Consensus 200 ~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 200 EDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp CTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred ccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 3599999999999999999998764
No 12
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.85 E-value=1.3e-20 Score=156.90 Aligned_cols=170 Identities=17% Similarity=0.092 Sum_probs=115.7
Q ss_pred HHHHHHhhc-CCcEEEEEecCCCch-------hHHHHHHcCCCCccceeecccCCCcccccccccccCHhHHHhhHhhCC
Q 030407 2 LALCKFLRD-KYSLAAVTNDIFTKE-------DGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFK 73 (178)
Q Consensus 2 ~~~~~~~~~-~~~vaVI~nd~g~~i-------D~~li~~~~~~~~~~~~~l~~GcCc~l~i~~dl~~~l~~l~~l~~~~~ 73 (178)
.++++.+.+ +++++||.+|+++.+ |..+++..+..+ .+..-+.++||++. ++...+.....+....+
T Consensus 74 ~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~--~~~~r~~~~~~~l~---~~a~~~~~~~~~~~~~g 148 (332)
T PRK09435 74 EALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHP--NAFIRPSPSSGTLG---GVARKTRETMLLCEAAG 148 (332)
T ss_pred HHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCC--CeEEEecCCccccc---chHHHHHHHHHHHhccC
Confidence 356667765 489999999998543 777776554322 32333335578762 33334433334445779
Q ss_pred CCEEEEeCCcchhhhcccccccceEEEEEeCCCCCCCCcCCCCCCCceeEEEEecCCCCCchh--HhHHHHHHHHHhcCC
Q 030407 74 ADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIG--ADLAVMERDALRMRD 151 (178)
Q Consensus 74 ~d~iiiEttG~~~~~~~~~~~ad~~I~VvD~~~~~~~~~~~~~qi~~adiiviNK~Dl~~~~~--~~~~~~~~~l~~~np 151 (178)
||+|||||+|...........+|.+++++++..+++.+.....+++.||++|+||+|+.+... .....+.+.++-.+|
T Consensus 149 ~d~viieT~Gv~qs~~~i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~ 228 (332)
T PRK09435 149 YDVILVETVGVGQSETAVAGMVDFFLLLQLPGAGDELQGIKKGIMELADLIVINKADGDNKTAARRAAAEYRSALRLLRP 228 (332)
T ss_pred CCEEEEECCCCccchhHHHHhCCEEEEEecCCchHHHHHHHhhhhhhhheEEeehhcccchhHHHHHHHHHHHHHhcccc
Confidence 999999999965444444456899999998777776655455689999999999999987511 122234444433232
Q ss_pred -----CCCEEEEecccCCCHHHHHHHHhhh
Q 030407 152 -----GGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 152 -----~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
..|++++||++|+|+++|++.+.+.
T Consensus 229 ~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~ 258 (332)
T PRK09435 229 KDPGWQPPVLTCSALEGEGIDEIWQAIEDH 258 (332)
T ss_pred cccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 2699999999999999999988764
No 13
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=99.83 E-value=5.8e-21 Score=143.86 Aligned_cols=115 Identities=25% Similarity=0.353 Sum_probs=83.7
Q ss_pred CCcEEEEEecCC-CchhHHHHHHcCCCCccceeecccCC-CcccccccccccCHhHH-HhhH-hhCCCCEEEEeCCcch-
Q 030407 11 KYSLAAVTNDIF-TKEDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPL-EELS-NLFKADLLLCESGGDN- 85 (178)
Q Consensus 11 ~~~vaVI~nd~g-~~iD~~li~~~~~~~~~~~~~l~~Gc-Cc~l~i~~dl~~~l~~l-~~l~-~~~~~d~iiiEttG~~- 85 (178)
+.++++|+||+| .++|+..+.+.+. .+.++.+|| ||++ ++|+...+..+ .++. +.++||+|||||+|+.
T Consensus 26 ~~~~~~i~~~~G~~~~d~~~~~~~~~----~v~~l~~GCiCC~~--~~~l~~~l~~l~~~~~~~~~~~d~I~IEt~G~~~ 99 (158)
T cd03112 26 GRKIAVIENEFGEVGIDNQLVVDTDE----EIIEMNNGCICCTV--RGDLIRALLDLLERLDAGKIAFDRIVIETTGLAD 99 (158)
T ss_pred CCcEEEEecCCCccchhHHHHhCCCc----eEEEeCCCEeEeeC--chhHHHHHHHHHHHHHhccCCCCEEEEECCCcCC
Confidence 589999999999 9999999986544 789999999 9986 66665444322 2332 2458999999999963
Q ss_pred ---hhhcc--cc-----cccceEEEEEeCCCCCCCC---cCCCCCCCceeEEEEecCCC
Q 030407 86 ---LAANF--SR-----ELADYIIYIIDVSGGDKIP---RKGGPGITQADLLVINKTDL 131 (178)
Q Consensus 86 ---~~~~~--~~-----~~ad~~I~VvD~~~~~~~~---~~~~~qi~~adiiviNK~Dl 131 (178)
+...+ .+ ...+.+++++|+.++.... ....+|++.||+||+||+|+
T Consensus 100 p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad~ivlnk~dl 158 (158)
T cd03112 100 PGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFADRILLNKTDL 158 (158)
T ss_pred HHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCCEEEEecccC
Confidence 11111 11 1248899999997754432 22446899999999999996
No 14
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.58 E-value=2e-14 Score=118.57 Aligned_cols=168 Identities=20% Similarity=0.131 Sum_probs=98.6
Q ss_pred HHHHHHhhc-CCcEEEEEecCCCch-------hHHHHHHcCCCCccceeecccCCCcccccccccccCHhHHHhhHhhCC
Q 030407 2 LALCKFLRD-KYSLAAVTNDIFTKE-------DGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFK 73 (178)
Q Consensus 2 ~~~~~~~~~-~~~vaVI~nd~g~~i-------D~~li~~~~~~~~~~~~~l~~GcCc~l~i~~dl~~~l~~l~~l~~~~~ 73 (178)
.+++..+.+ ++++++|.+|+..++ |...+......+...++++.++| ++ +.+......+..+.+..+
T Consensus 52 ~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~l~~~g 126 (300)
T TIGR00750 52 EALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRG--HL---GGLSQATRELILLLDAAG 126 (300)
T ss_pred HHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccc--cc---cchhHHHHHHHHHHHhCC
Confidence 345565655 499999999988543 33334332221223556665533 11 011111223333445679
Q ss_pred CCEEEEeCCcchhhhcccccccceEEEEEeCCCCCCCCcCCCCCCCceeEEEEecCCCCCchhHhHHHHH----HHHHhc
Q 030407 74 ADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVME----RDALRM 149 (178)
Q Consensus 74 ~d~iiiEttG~~~~~~~~~~~ad~~I~VvD~~~~~~~~~~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~----~~l~~~ 149 (178)
+|+|||||+|.+.........+|.++++.++..+++.........+.++++++||+|+.+. ....... ..+..+
T Consensus 127 ~D~viidT~G~~~~e~~i~~~aD~i~vv~~~~~~~el~~~~~~l~~~~~ivv~NK~Dl~~~--~~~~~~~~~~~~~l~~l 204 (300)
T TIGR00750 127 YDVIIVETVGVGQSEVDIANMADTFVVVTIPGTGDDLQGIKAGLMEIADIYVVNKADGEGA--TNVTIARLMLALALEEI 204 (300)
T ss_pred CCEEEEeCCCCchhhhHHHHhhceEEEEecCCccHHHHHHHHHHhhhccEEEEEcccccch--hHHHHHHHHHHHHHhhc
Confidence 9999999999543222222345777777666555443322233467789999999999876 3222111 111111
Q ss_pred -----CCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 150 -----RDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 150 -----np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+...+++++||++|+|+++|++++.+.
T Consensus 205 ~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 205 RRREDGWRPPVLTTSAVEGRGIDELWDAIEEH 236 (300)
T ss_pred cccccCCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 122479999999999999999988763
No 15
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.07 E-value=2.6e-10 Score=97.44 Aligned_cols=105 Identities=19% Similarity=0.176 Sum_probs=74.9
Q ss_pred CCCCEEEEeCCcch----hh---hccc-------ccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCC
Q 030407 72 FKADLLLCESGGDN----LA---ANFS-------RELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLAS 133 (178)
Q Consensus 72 ~~~d~iiiEttG~~----~~---~~~~-------~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~ 133 (178)
.+-.|.+|+|.|+- +. ..|+ ...++.+++|+|++.+...++. +..--..|.+||+||||+.+
T Consensus 224 ~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~ 303 (444)
T COG1160 224 DGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVE 303 (444)
T ss_pred CCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCC
Confidence 35678999999951 11 1111 1236999999999988655432 11123568999999999987
Q ss_pred chhHhHHHHHHHHHhcCC---CCCEEEEecccCCCHHHHHHHHhhh
Q 030407 134 AIGADLAVMERDALRMRD---GGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 134 ~~~~~~~~~~~~l~~~np---~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+.....+..++.+++..| +||++++||++|.|+.++++.+...
T Consensus 304 ~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~ 349 (444)
T COG1160 304 EDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEI 349 (444)
T ss_pred chhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHH
Confidence 532455666667766554 6899999999999999999987654
No 16
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.99 E-value=3.4e-09 Score=78.34 Aligned_cols=96 Identities=15% Similarity=0.070 Sum_probs=71.6
Q ss_pred EEEeCCcchhhhc-cc------ccccceEEEEEeCCCCCC-CCcCCCCCCCceeEEEEecCCCC-CchhHhHHHHHHHHH
Q 030407 77 LLCESGGDNLAAN-FS------RELADYIIYIIDVSGGDK-IPRKGGPGITQADLLVINKTDLA-SAIGADLAVMERDAL 147 (178)
Q Consensus 77 iiiEttG~~~~~~-~~------~~~ad~~I~VvD~~~~~~-~~~~~~~qi~~adiiviNK~Dl~-~~~~~~~~~~~~~l~ 147 (178)
-+|+|.|--+..+ +. ...+|.++++.|++.... .+..+...+..+.|-|+||+|+. ++ +++++.+++++
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f~~pvIGVITK~Dl~~~~--~~i~~a~~~L~ 116 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMFNKPVIGVITKIDLPSDD--ANIERAKKWLK 116 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhcccCCCEEEEEECccCccch--hhHHHHHHHHH
Confidence 3489999422211 11 113699999999987643 33345556778899999999998 45 78888888998
Q ss_pred hcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 148 RMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 148 ~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
.... .++|.+|+.+|+||++|.++|++
T Consensus 117 ~aG~-~~if~vS~~~~eGi~eL~~~L~~ 143 (143)
T PF10662_consen 117 NAGV-KEIFEVSAVTGEGIEELKDYLEE 143 (143)
T ss_pred HcCC-CCeEEEECCCCcCHHHHHHHHhC
Confidence 6543 47899999999999999999864
No 17
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.95 E-value=2.3e-09 Score=78.72 Aligned_cols=102 Identities=14% Similarity=0.035 Sum_probs=72.9
Q ss_pred CCCEEEEeCCcchhhh---------c--ccccccceEEEEEeCCCCCCCCc-CCCC---CCCceeEEEEecCCCC-Cchh
Q 030407 73 KADLLLCESGGDNLAA---------N--FSRELADYIIYIIDVSGGDKIPR-KGGP---GITQADLLVINKTDLA-SAIG 136 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~---------~--~~~~~ad~~I~VvD~~~~~~~~~-~~~~---qi~~adiiviNK~Dl~-~~~~ 136 (178)
+.++++++|.|..-.. . .....+|.+++++|+++...... .... ..+.+.++|+||+|+. .+
T Consensus 50 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-- 127 (168)
T cd04163 50 DAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDK-- 127 (168)
T ss_pred CeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccH--
Confidence 5789999999942110 0 01124689999999987632211 1111 1246789999999998 34
Q ss_pred HhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 137 ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 137 ~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
..+....+.++..++..+++.+|++++.|++++++.|.+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 128 EDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred HHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 5666677777777777899999999999999999998764
No 18
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.93 E-value=3.8e-09 Score=78.73 Aligned_cols=122 Identities=24% Similarity=0.236 Sum_probs=73.8
Q ss_pred HHHHHhhc-CCcEEEEEecCC-CchhHHHHH------HcCCCCccceeecccCC-CcccccccccccCHhHHHhhHhhCC
Q 030407 3 ALCKFLRD-KYSLAAVTNDIF-TKEDGEFLM------RNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNLFK 73 (178)
Q Consensus 3 ~~~~~~~~-~~~vaVI~nd~g-~~iD~~li~------~~~~~~~~~~~~l~~Gc-Cc~l~i~~dl~~~l~~l~~l~~~~~ 73 (178)
++...+.+ +.|+.++-.|++ ..-.+.++. +....+.-.+..+..|+ |-.. ........+..+..+
T Consensus 18 ~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 91 (148)
T cd03114 18 ALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGL------SRATPEVIRVLDAAG 91 (148)
T ss_pred HHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEEcCCcCccccc------chhHHHHHHHHHhcC
Confidence 45555654 499999999987 322222221 11000111344455444 2211 122222334444568
Q ss_pred CCEEEEeCCcchhhhcccccccceEEEEEeCCCCCCCCcCCCCCCCceeEEEEecCC
Q 030407 74 ADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTD 130 (178)
Q Consensus 74 ~d~iiiEttG~~~~~~~~~~~ad~~I~VvD~~~~~~~~~~~~~qi~~adiiviNK~D 130 (178)
+|+|||||+|.+.........+|.++++..++..+.+...+.++++.||++++||+|
T Consensus 92 ~D~iiIDtaG~~~~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 92 FDVIIVETVGVGQSEVDIASMADTTVVVMAPGAGDDIQAIKAGIMEIADIVVVNKAD 148 (148)
T ss_pred CCEEEEECCccChhhhhHHHhCCEEEEEECCCchhHHHHhhhhHhhhcCEEEEeCCC
Confidence 999999999953222112234788999999887777777777889999999999998
No 19
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.91 E-value=6.1e-09 Score=78.11 Aligned_cols=81 Identities=17% Similarity=0.156 Sum_probs=59.1
Q ss_pred ccceEEEEEeCCCCCCCCcC-CCC-CCCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHH
Q 030407 94 LADYIIYIIDVSGGDKIPRK-GGP-GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS 171 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~~-~~~-qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~ 171 (178)
.+|.+++|+|++.+...... ... ....+.++++||+|+.+. +.+.+.+++++.....|++++||++|+|++++++
T Consensus 64 ~ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 64 DVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred cCCEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 47999999999876532211 001 123457999999999654 4456677777665557999999999999999999
Q ss_pred HHhhhh
Q 030407 172 ITHYIV 177 (178)
Q Consensus 172 ~l~~~~ 177 (178)
++.+..
T Consensus 141 ~l~~~~ 146 (158)
T PRK15467 141 YLASLT 146 (158)
T ss_pred HHHHhc
Confidence 987653
No 20
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.91 E-value=5e-09 Score=79.21 Aligned_cols=102 Identities=15% Similarity=0.045 Sum_probs=68.5
Q ss_pred CCCEEEEeCCcchh-h---hcccccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCchhHhH----H
Q 030407 73 KADLLLCESGGDNL-A---ANFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADL----A 140 (178)
Q Consensus 73 ~~d~iiiEttG~~~-~---~~~~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~~~~~----~ 140 (178)
++++.|++|+|..- . ..+. ..+|.+++|+|+.++...... +..+...+.++++||+|+..+ +.. +
T Consensus 61 ~~~~~liDtpG~~~~~~~~~~~~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~--~~~~~~~~ 137 (189)
T cd00881 61 DRRVNFIDTPGHEDFSSEVIRGL-SVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGE--EDLEEVLR 137 (189)
T ss_pred CEEEEEEeCCCcHHHHHHHHHHH-HhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcch--hcHHHHHH
Confidence 57899999999421 1 1111 246999999999876432210 111235678999999999864 333 3
Q ss_pred HHHHHHHhcC------------CCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 141 VMERDALRMR------------DGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 141 ~~~~~l~~~n------------p~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
.+.+.++... ...+++++||++|.|++++++++.+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 138 EIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred HHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 3444444322 257999999999999999999987653
No 21
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.89 E-value=8.3e-09 Score=76.76 Aligned_cols=102 Identities=14% Similarity=0.081 Sum_probs=66.5
Q ss_pred CCCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc----CCCCCCCceeEEEEecCCCCCchhHhHHHHH
Q 030407 72 FKADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGADLAVME 143 (178)
Q Consensus 72 ~~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~----~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~ 143 (178)
.+.++.+++|.|.. +...+ ...+|.+++|+|++++..... ........+.++|+||+|+.+.. .+.+.
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~-~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~---~~~~~ 123 (168)
T cd01887 48 KIPGITFIDTPGHEAFTNMRARG-ASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNAN---PERVK 123 (168)
T ss_pred CcceEEEEeCCCcHHHHHHHHHH-HhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccccc---HHHHH
Confidence 36789999999941 11111 235799999999987542211 01112345679999999997541 12222
Q ss_pred HHHHh--------cCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 144 RDALR--------MRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 144 ~~l~~--------~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
..++. .....+++++||++|+|+++++++|.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 124 NELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred HHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 22211 12346899999999999999999998764
No 22
>COG1159 Era GTPase [General function prediction only]
Probab=98.88 E-value=7.7e-09 Score=84.28 Aligned_cols=104 Identities=14% Similarity=0.062 Sum_probs=77.2
Q ss_pred hCCCCEEEEeCCcch---------hh--hcccccccceEEEEEeCCCCCCCCcC-CCCC---CCceeEEEEecCCCCCch
Q 030407 71 LFKADLLLCESGGDN---------LA--ANFSRELADYIIYIIDVSGGDKIPRK-GGPG---ITQADLLVINKTDLASAI 135 (178)
Q Consensus 71 ~~~~d~iiiEttG~~---------~~--~~~~~~~ad~~I~VvD~~~~~~~~~~-~~~q---i~~adiiviNK~Dl~~~~ 135 (178)
..+...|||.|.|.. +. +......+|.+++|+|+.++....+. ...+ ...+.++++||+|...+
T Consensus 51 ~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~- 129 (298)
T COG1159 51 TDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKP- 129 (298)
T ss_pred cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCc-
Confidence 447889999999952 11 11112347999999999875433221 1122 24588999999999988
Q ss_pred hHh-HHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 136 GAD-LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 136 ~~~-~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.. +..+.+..+...|...++++||++|.|++.|.+.+..-
T Consensus 130 -~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~ 170 (298)
T COG1159 130 -KTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEY 170 (298)
T ss_pred -HHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHh
Confidence 55 56778888888899999999999999999999988653
No 23
>PRK00089 era GTPase Era; Reviewed
Probab=98.87 E-value=1.5e-08 Score=82.96 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=71.7
Q ss_pred CCCCEEEEeCCcchhh-----h----c--ccccccceEEEEEeCCCCCCCCc-CC---CCCCCceeEEEEecCCCC-Cch
Q 030407 72 FKADLLLCESGGDNLA-----A----N--FSRELADYIIYIIDVSGGDKIPR-KG---GPGITQADLLVINKTDLA-SAI 135 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~-----~----~--~~~~~ad~~I~VvD~~~~~~~~~-~~---~~qi~~adiiviNK~Dl~-~~~ 135 (178)
.+..++|++|.|..-. . . .....+|.+++|+|+++...... .. ......+.++|+||+|+. +.
T Consensus 51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~- 129 (292)
T PRK00089 51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDK- 129 (292)
T ss_pred CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCH-
Confidence 3478999999994210 0 0 01124699999999987322111 11 112345789999999998 44
Q ss_pred hHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 136 GADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 136 ~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
.++....+.+.+..+..+++++||++|.|++++++++.+.+
T Consensus 130 -~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l 170 (292)
T PRK00089 130 -EELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYL 170 (292)
T ss_pred -HHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhC
Confidence 45555566666666778999999999999999999987653
No 24
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.86 E-value=1e-08 Score=74.62 Aligned_cols=79 Identities=14% Similarity=0.010 Sum_probs=55.5
Q ss_pred ccceEEEEEeCCCCCCCCc-CCCCCCCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHH
Q 030407 94 LADYIIYIIDVSGGDKIPR-KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI 172 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~-~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~ 172 (178)
.+|.+++|+|++++..... .+......+.++|+||+|+.+.. ...+...+..+..+ ..+++++||++|+|+++++++
T Consensus 62 ~ad~vilv~d~~~~~s~~~~~~~~~~~~p~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~ 139 (142)
T TIGR02528 62 DADVIALVQSATDPESRFPPGFASIFVKPVIGLVTKIDLAEAD-VDIERAKELLETAG-AEPIFEISSVDEQGLEALVDY 139 (142)
T ss_pred cCCEEEEEecCCCCCcCCChhHHHhccCCeEEEEEeeccCCcc-cCHHHHHHHHHHcC-CCcEEEEecCCCCCHHHHHHH
Confidence 5799999999987765422 12222334789999999997531 23344455555432 348999999999999999998
Q ss_pred Hh
Q 030407 173 TH 174 (178)
Q Consensus 173 l~ 174 (178)
+.
T Consensus 140 l~ 141 (142)
T TIGR02528 140 LN 141 (142)
T ss_pred Hh
Confidence 74
No 25
>PRK13768 GTPase; Provisional
Probab=98.86 E-value=1.2e-08 Score=82.39 Aligned_cols=109 Identities=17% Similarity=0.102 Sum_probs=72.7
Q ss_pred HHHhhHhhCCCCEEEEeCCcchhhhcc-------------cccccceEEEEEeCCCCCCCCc----CCC-----CCCCce
Q 030407 64 PLEELSNLFKADLLLCESGGDNLAANF-------------SRELADYIIYIIDVSGGDKIPR----KGG-----PGITQA 121 (178)
Q Consensus 64 ~l~~l~~~~~~d~iiiEttG~~~~~~~-------------~~~~ad~~I~VvD~~~~~~~~~----~~~-----~qi~~a 121 (178)
.+.......+.|++++++.|. ...+ .....+.+++|+|++.+..... .+. .....+
T Consensus 87 ~l~~~l~~~~~~~~~~d~~g~--~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~ 164 (253)
T PRK13768 87 EIKEEIESLDADYVLVDTPGQ--MELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLP 164 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcH--HHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCC
Confidence 333333455779999999993 1111 1101578999999976543211 000 124557
Q ss_pred eEEEEecCCCCCchhHhHHHHHHH----------------------------HHhcCCCCCEEEEecccCCCHHHHHHHH
Q 030407 122 DLLVINKTDLASAIGADLAVMERD----------------------------ALRMRDGGPFIFAQVGWVIGIIFTLSIT 173 (178)
Q Consensus 122 diiviNK~Dl~~~~~~~~~~~~~~----------------------------l~~~np~a~i~~~SA~~g~gi~el~~~l 173 (178)
-++|+||+|+.+. .+.+...+. +++.++..+++++|+++++|+++|+++|
T Consensus 165 ~i~v~nK~D~~~~--~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I 242 (253)
T PRK13768 165 QIPVLNKADLLSE--EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAI 242 (253)
T ss_pred EEEEEEhHhhcCc--hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHH
Confidence 8999999999977 555444433 3344667799999999999999999998
Q ss_pred hhh
Q 030407 174 HYI 176 (178)
Q Consensus 174 ~~~ 176 (178)
.+.
T Consensus 243 ~~~ 245 (253)
T PRK13768 243 QEV 245 (253)
T ss_pred HHH
Confidence 764
No 26
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.85 E-value=1.6e-08 Score=74.91 Aligned_cols=105 Identities=17% Similarity=0.141 Sum_probs=69.4
Q ss_pred CCCCEEEEeCCcchhh-------hcc-------cccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCC
Q 030407 72 FKADLLLCESGGDNLA-------ANF-------SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLAS 133 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~-------~~~-------~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~ 133 (178)
.+.++.+++|.|..-. ..+ ....+|.+++|+|+.++...... .......+.++++||+|+.+
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 127 (174)
T cd01895 48 DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVE 127 (174)
T ss_pred CCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCC
Confidence 3567899999994100 000 11246899999999876432210 11112457799999999986
Q ss_pred chhHhHHHHHHHHHhcCC---CCCEEEEecccCCCHHHHHHHHhhh
Q 030407 134 AIGADLAVMERDALRMRD---GGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 134 ~~~~~~~~~~~~l~~~np---~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
......+.+.+.+++..+ ..+++++||++|+|++++++.+.+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 128 KDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 521234455555654433 5789999999999999999998764
No 27
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.85 E-value=1.4e-08 Score=78.10 Aligned_cols=102 Identities=16% Similarity=0.204 Sum_probs=67.0
Q ss_pred CCCEEEEeCCcch-hhhccc--ccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCchhHh----HHH
Q 030407 73 KADLLLCESGGDN-LAANFS--RELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGAD----LAV 141 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~~~~~--~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~~~~----~~~ 141 (178)
++.+.+++|.|.. +...+. ...+|.+++|+|++.+...... .......+-++++||+|+... .. .+.
T Consensus 67 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~--~~~~~~~~~ 144 (192)
T cd01889 67 NLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPE--EERERKIEK 144 (192)
T ss_pred CceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCH--HHHHHHHHH
Confidence 6789999999942 112221 1246899999999876432210 111123466899999999865 33 233
Q ss_pred HHHHHHhc-----CCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 142 MERDALRM-----RDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 142 ~~~~l~~~-----np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+.+.++.. ....+++++||++|+|+++|+++|..+
T Consensus 145 ~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~ 184 (192)
T cd01889 145 MKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNL 184 (192)
T ss_pred HHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhc
Confidence 33333321 345799999999999999999998764
No 28
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.85 E-value=1.2e-08 Score=82.94 Aligned_cols=103 Identities=11% Similarity=0.007 Sum_probs=68.2
Q ss_pred CCCEEEEeCCcchhh-----h-----c-ccccccceEEEEEeCCCCCCCCcCCC---CCCCceeEEEEecCCCCCchhHh
Q 030407 73 KADLLLCESGGDNLA-----A-----N-FSRELADYIIYIIDVSGGDKIPRKGG---PGITQADLLVINKTDLASAIGAD 138 (178)
Q Consensus 73 ~~d~iiiEttG~~~~-----~-----~-~~~~~ad~~I~VvD~~~~~~~~~~~~---~qi~~adiiviNK~Dl~~~~~~~ 138 (178)
+..++|++|.|..-. . . .....+|.+++|+|++.......... .....+-++|+||+|+.+. ..
T Consensus 47 ~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~~--~~ 124 (270)
T TIGR00436 47 ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKFK--DK 124 (270)
T ss_pred CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCCCH--HH
Confidence 456899999994210 0 0 01134799999999987543321111 1134567999999999865 44
Q ss_pred HHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 139 LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 139 ~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
.......+....+..+++++||++|+|+++|++++.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l 163 (270)
T TIGR00436 125 LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHL 163 (270)
T ss_pred HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 433333444444556899999999999999999987643
No 29
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.84 E-value=2.1e-08 Score=72.50 Aligned_cols=102 Identities=21% Similarity=0.083 Sum_probs=70.9
Q ss_pred CCCEEEEeCCcchhhhc--------c--cccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCchhHh
Q 030407 73 KADLLLCESGGDNLAAN--------F--SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGAD 138 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~~--------~--~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~~~~ 138 (178)
.+++.+++|.|..-... . ....+|.+++++|+......... .......+.++|+||+|+..+ ..
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~ 121 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPE--EE 121 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCCh--hh
Confidence 67999999999421100 0 11246899999999876543222 122346678999999999877 44
Q ss_pred HHHHH---HHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 139 LAVME---RDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 139 ~~~~~---~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
..... .......+..+++++||++++|++++++++.++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 122 EEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred HHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 44332 233344567899999999999999999998765
No 30
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.83 E-value=1.1e-08 Score=76.32 Aligned_cols=100 Identities=18% Similarity=0.162 Sum_probs=66.2
Q ss_pred CCCEEEEeCCcch-hh---hcccccccceEEEEEeCCCCCCCCc------C---CCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDN-LA---ANFSRELADYIIYIIDVSGGDKIPR------K---GGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~---~~~~~~~ad~~I~VvD~~~~~~~~~------~---~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
++.+.+++|.|.. .. ..+ ...+|.+++|+|++....... . ....-..+-++++||+|+.+. ...
T Consensus 49 ~~~~~l~Dt~G~~~~~~~~~~~-~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~ 125 (167)
T cd04160 49 NARLKFWDLGGQESLRSLWDKY-YAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSV 125 (167)
T ss_pred CEEEEEEECCCChhhHHHHHHH-hCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCH
Confidence 5788999999942 11 111 235799999999976532110 0 001123567999999999766 444
Q ss_pred HHHHHHHHhc----C-CCCCEEEEecccCCCHHHHHHHHhh
Q 030407 140 AVMERDALRM----R-DGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 140 ~~~~~~l~~~----n-p~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
+.+.+.++.. + ...+++++||++|+|+++++++|.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 126 EEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred HHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 4455544432 1 2358999999999999999999864
No 31
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=1.2e-08 Score=78.18 Aligned_cols=101 Identities=16% Similarity=0.108 Sum_probs=72.1
Q ss_pred CCCEEEEeCCcc----hhhhcccccccceEEEEEeCCCCCCCCc------CCCCCCC--ceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGD----NLAANFSRELADYIIYIIDVSGGDKIPR------KGGPGIT--QADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~----~~~~~~~~~~ad~~I~VvD~~~~~~~~~------~~~~qi~--~adiiviNK~Dl~~~~~~~~~ 140 (178)
.....|..|.|. +++++|++ .++..|+|+|.++.+.... ...++.. .--.+|.||+||.+....+.+
T Consensus 53 ~ikfeIWDTAGQERy~slapMYyR-gA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ 131 (200)
T KOG0092|consen 53 TIKFEIWDTAGQERYHSLAPMYYR-GANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFE 131 (200)
T ss_pred EEEEEEEEcCCcccccccccceec-CCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHH
Confidence 467889999994 45667776 7899999999988654321 0111222 112568999999984325566
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
........ .+..+++||||||.|++++|..|.+-
T Consensus 132 ea~~yAe~--~gll~~ETSAKTg~Nv~~if~~Ia~~ 165 (200)
T KOG0092|consen 132 EAQAYAES--QGLLFFETSAKTGENVNEIFQAIAEK 165 (200)
T ss_pred HHHHHHHh--cCCEEEEEecccccCHHHHHHHHHHh
Confidence 66666654 46799999999999999999987653
No 32
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.82 E-value=1.2e-08 Score=87.64 Aligned_cols=102 Identities=20% Similarity=0.198 Sum_probs=70.2
Q ss_pred CCCEEEEeCCcchh-------hhcc-------cccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCC-C
Q 030407 73 KADLLLCESGGDNL-------AANF-------SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLA-S 133 (178)
Q Consensus 73 ~~d~iiiEttG~~~-------~~~~-------~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~-~ 133 (178)
+..+.+++|.|..- ...+ ....+|.+++|+|++++...... ....-..+.++|+||+|+. +
T Consensus 219 ~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~ 298 (429)
T TIGR03594 219 GKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKD 298 (429)
T ss_pred CcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCC
Confidence 34789999999410 0111 11247999999999876543221 1111235789999999998 4
Q ss_pred chhHhHHHHHHHHHhcC---CCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 134 AIGADLAVMERDALRMR---DGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 134 ~~~~~~~~~~~~l~~~n---p~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
. +..+.+.+.++... +.++++++||++|.|++++++++.+.
T Consensus 299 ~--~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~ 342 (429)
T TIGR03594 299 E--KTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEV 342 (429)
T ss_pred H--HHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 4 55666666666543 45799999999999999999987654
No 33
>PRK15494 era GTPase Era; Provisional
Probab=98.81 E-value=1.7e-08 Score=84.71 Aligned_cols=102 Identities=16% Similarity=0.045 Sum_probs=70.1
Q ss_pred CCCEEEEeCCcch-----hhhcc------cccccceEEEEEeCCCCCCCCc-CC---CCCCCceeEEEEecCCCCCchhH
Q 030407 73 KADLLLCESGGDN-----LAANF------SRELADYIIYIIDVSGGDKIPR-KG---GPGITQADLLVINKTDLASAIGA 137 (178)
Q Consensus 73 ~~d~iiiEttG~~-----~~~~~------~~~~ad~~I~VvD~~~~~~~~~-~~---~~qi~~adiiviNK~Dl~~~~~~ 137 (178)
+..++|++|.|.. +...+ ....+|++++|+|+........ .. ......+.++|+||+|+.+.
T Consensus 99 ~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~--- 175 (339)
T PRK15494 99 DTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK--- 175 (339)
T ss_pred CeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc---
Confidence 4568999999941 11100 1135799999999876432211 11 11233466899999999754
Q ss_pred hHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 138 DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 138 ~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
....+.+.++..++..+++++||++|.|+++++++|.+.+
T Consensus 176 ~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l 215 (339)
T PRK15494 176 YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKA 215 (339)
T ss_pred cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhC
Confidence 3556667777677778999999999999999999987643
No 34
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.79 E-value=3e-08 Score=74.76 Aligned_cols=102 Identities=18% Similarity=0.039 Sum_probs=63.1
Q ss_pred CCCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCcC--CC--CCCCceeEEEEecCCCCCchhHh-HHHH
Q 030407 72 FKADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPRK--GG--PGITQADLLVINKTDLASAIGAD-LAVM 142 (178)
Q Consensus 72 ~~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~~--~~--~qi~~adiiviNK~Dl~~~~~~~-~~~~ 142 (178)
.++.+.|+.|.|.. ....+. ..+|.+++|+|++.+...... +. .....+-++|+||+|+.+..... .+++
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~-~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~ 143 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSL-AACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQI 143 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHH-HhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHH
Confidence 35678899999931 111122 247999999999875432110 00 01234579999999996541111 1222
Q ss_pred HHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 143 ERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 143 ~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+.+ .. +..+++++||++|+|++++++++.+.
T Consensus 144 ~~~~-~~-~~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 144 EDVL-GL-DPSEAILVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred HHHh-CC-CcccEEEeeccCCCCHHHHHHHHHhh
Confidence 2221 11 33469999999999999999998764
No 35
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.78 E-value=3e-08 Score=73.32 Aligned_cols=101 Identities=14% Similarity=0.045 Sum_probs=64.2
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---------CCCC--CCCceeEEEEecCCCCCchhH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---------KGGP--GITQADLLVINKTDLASAIGA 137 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~--qi~~adiiviNK~Dl~~~~~~ 137 (178)
+..+-+++|.|.. +...+. ..+|.+++|+|+++...... .... .-..+-++|+||+|+.+. .
T Consensus 44 ~~~~~l~Dt~G~~~~~~~~~~~~-~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~--~ 120 (162)
T cd04157 44 NLSFTAFDMSGQGKYRGLWEHYY-KNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA--L 120 (162)
T ss_pred CEEEEEEECCCCHhhHHHHHHHH-ccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC--C
Confidence 5677899999942 112222 35799999999987542110 0110 123567999999999765 3
Q ss_pred hHHHHHHHHH--hc-CCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 138 DLAVMERDAL--RM-RDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 138 ~~~~~~~~l~--~~-np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
..+.+...++ .. +...+++++||++|+|+++++++|..+
T Consensus 121 ~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~~ 162 (162)
T cd04157 121 TAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQAQ 162 (162)
T ss_pred CHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhcC
Confidence 3333333332 11 112368999999999999999998753
No 36
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.77 E-value=2.3e-08 Score=86.20 Aligned_cols=102 Identities=20% Similarity=0.196 Sum_probs=69.8
Q ss_pred CCCEEEEeCCcchh-------hh------cc-cccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCc
Q 030407 73 KADLLLCESGGDNL-------AA------NF-SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 134 (178)
Q Consensus 73 ~~d~iiiEttG~~~-------~~------~~-~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~ 134 (178)
+.++.+++|.|..- .. +. ....+|.+++|+|++.+...+.. .......+.++++||+|+.++
T Consensus 220 ~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~ 299 (435)
T PRK00093 220 GQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDE 299 (435)
T ss_pred CeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCH
Confidence 45789999999410 00 11 11246999999999887543221 111123578999999999866
Q ss_pred hhHhHHHHHHHHHhcC---CCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 135 IGADLAVMERDALRMR---DGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 135 ~~~~~~~~~~~l~~~n---p~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+.+.+.++... +.++++++||++|.|++++++.+.+.
T Consensus 300 --~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~ 342 (435)
T PRK00093 300 --KTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEA 342 (435)
T ss_pred --HHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 55556665555432 46899999999999999999987653
No 37
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.77 E-value=4e-08 Score=72.55 Aligned_cols=101 Identities=12% Similarity=0.003 Sum_probs=64.2
Q ss_pred CCCEEEEeCCcch-hhh-cc-cccccceEEEEEeCCCCCCCCc-C---CCCCCCc-eeEEEEecCCCCCchhHh----HH
Q 030407 73 KADLLLCESGGDN-LAA-NF-SRELADYIIYIIDVSGGDKIPR-K---GGPGITQ-ADLLVINKTDLASAIGAD----LA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~~-~~-~~~~ad~~I~VvD~~~~~~~~~-~---~~~qi~~-adiiviNK~Dl~~~~~~~----~~ 140 (178)
+..+.+++|.|.. ... .. ....+|.+++|+|+.++..... . ....... +-++++||+|+.++ .. .+
T Consensus 50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~--~~~~~~~~ 127 (164)
T cd04171 50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDE--DWLELVEE 127 (164)
T ss_pred CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCH--HHHHHHHH
Confidence 4568899999931 111 11 1225799999999976321111 0 0011222 56899999999865 32 23
Q ss_pred HHHHHHHhcC-CCCCEEEEecccCCCHHHHHHHHhh
Q 030407 141 VMERDALRMR-DGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 141 ~~~~~l~~~n-p~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
.+.+.++... ...+++++||++|+|++++++.+.+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 128 EIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 4444444321 3469999999999999999998865
No 38
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.77 E-value=2.3e-08 Score=75.41 Aligned_cols=101 Identities=16% Similarity=0.128 Sum_probs=64.5
Q ss_pred CCCEEEEeCCcch-hhh--cccccccceEEEEEeCCCCCCCCc---C---C-C-C-CCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDN-LAA--NFSRELADYIIYIIDVSGGDKIPR---K---G-G-P-GITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~~--~~~~~~ad~~I~VvD~~~~~~~~~---~---~-~-~-qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
+..+.+++|.|.. ... ......+|++++|+|+++...... . . . . .-..+-++|.||+|+... ...+
T Consensus 52 ~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~ 129 (168)
T cd04149 52 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPH 129 (168)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHH
Confidence 5778999999942 111 111235799999999987532211 0 0 0 0 112467999999999754 3334
Q ss_pred HHHHHHH--hcC-CCCCEEEEecccCCCHHHHHHHHhh
Q 030407 141 VMERDAL--RMR-DGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 141 ~~~~~l~--~~n-p~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
++.+.++ ..+ ...+++++||++|+|++++|++|.+
T Consensus 130 ~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 130 EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred HHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 4554442 112 2236899999999999999999864
No 39
>PTZ00099 rab6; Provisional
Probab=98.76 E-value=3.1e-08 Score=75.71 Aligned_cols=102 Identities=17% Similarity=0.050 Sum_probs=65.7
Q ss_pred CCCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---CCC-----CCCCceeEEEEecCCCCCchhHhH
Q 030407 72 FKADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---KGG-----PGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 72 ~~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---~~~-----~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
....+.|++|.|.. +...+. ..+|++++|+|.++...... .+. ..-..+-++|.||+||.+......
T Consensus 27 ~~v~l~iwDt~G~e~~~~~~~~~~-~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~ 105 (176)
T PTZ00099 27 GPVRLQLWDTAGQERFRSLIPSYI-RDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTY 105 (176)
T ss_pred EEEEEEEEECCChHHhhhccHHHh-CCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCH
Confidence 35789999999942 112232 35899999999987532211 000 011234589999999964311233
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+......+.. ...++++||++|+|++++|++|.+.
T Consensus 106 ~e~~~~~~~~--~~~~~e~SAk~g~nV~~lf~~l~~~ 140 (176)
T PTZ00099 106 EEGMQKAQEY--NTMFHETSAKAGHNIKVLFKKIAAK 140 (176)
T ss_pred HHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3344444443 3478999999999999999998754
No 40
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.76 E-value=2.4e-08 Score=75.31 Aligned_cols=99 Identities=16% Similarity=0.121 Sum_probs=65.1
Q ss_pred CCCEEEEeCCcchh-h---hcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDNL-A---ANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~-~---~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
++.+.++++.|..- . ..+. ..+|.+++|+|++....... .....-..+-++|+||+|+... ...
T Consensus 57 ~~~l~l~D~~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~ 133 (173)
T cd04154 57 GYKLNIWDVGGQKTLRPYWRNYF-ESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA--LSE 133 (173)
T ss_pred CEEEEEEECCCCHHHHHHHHHHh-CCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC--CCH
Confidence 56788999999421 1 1122 25799999999987532110 0101123467999999999765 344
Q ss_pred HHHHHHHHhc---CCCCCEEEEecccCCCHHHHHHHHh
Q 030407 140 AVMERDALRM---RDGGPFIFAQVGWVIGIIFTLSITH 174 (178)
Q Consensus 140 ~~~~~~l~~~---np~a~i~~~SA~~g~gi~el~~~l~ 174 (178)
+.+.+.++.. ....+++++||++|+|++++++++.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 134 EEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred HHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHh
Confidence 4455444321 2346899999999999999999875
No 41
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.74 E-value=4.4e-08 Score=73.02 Aligned_cols=100 Identities=15% Similarity=0.112 Sum_probs=64.2
Q ss_pred CCCEEEEeCCcchhh---hc-------c--cccccceEEEEEeCCCCCCCC-c---C----CCCCC-CceeEEEEecCCC
Q 030407 73 KADLLLCESGGDNLA---AN-------F--SRELADYIIYIIDVSGGDKIP-R---K----GGPGI-TQADLLVINKTDL 131 (178)
Q Consensus 73 ~~d~iiiEttG~~~~---~~-------~--~~~~ad~~I~VvD~~~~~~~~-~---~----~~~qi-~~adiiviNK~Dl 131 (178)
+..+.|++|.|..-. .. . .....|.+++|+|+++..... . . ..... ..+-++|+||+|+
T Consensus 46 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl 125 (168)
T cd01897 46 YLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDL 125 (168)
T ss_pred ceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEcccc
Confidence 467899999994100 00 0 011257899999998653311 0 0 11111 4567999999999
Q ss_pred CCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 132 ASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+. .......+..+ .+..+++++||++|+|++++++++.+.
T Consensus 126 ~~~--~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 166 (168)
T cd01897 126 LTF--EDLSEIEEEEE--LEGEEVLKISTLTEEGVDEVKNKACEL 166 (168)
T ss_pred Cch--hhHHHHHHhhh--hccCceEEEEecccCCHHHHHHHHHHH
Confidence 876 44443333322 245689999999999999999998764
No 42
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.72 E-value=4.3e-08 Score=76.38 Aligned_cols=101 Identities=14% Similarity=0.087 Sum_probs=63.1
Q ss_pred CCEEEEeCCcch-hhhccc--ccccceEEEEEeCCCCC-CCC-cCC---CCCCCc-eeEEEEecCCCCCchhHhHHHHHH
Q 030407 74 ADLLLCESGGDN-LAANFS--RELADYIIYIIDVSGGD-KIP-RKG---GPGITQ-ADLLVINKTDLASAIGADLAVMER 144 (178)
Q Consensus 74 ~d~iiiEttG~~-~~~~~~--~~~ad~~I~VvD~~~~~-~~~-~~~---~~qi~~-adiiviNK~Dl~~~~~~~~~~~~~ 144 (178)
.-+.|+.|.|.. +...+. ...+|.+++|+|+..+. ... ... ...... +-++|+||+|+.++ .+.....+
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~--~~~~~~~~ 160 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKE--EQALENYE 160 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCH--HHHHHHHH
Confidence 457899999931 111111 12359999999998742 111 100 001121 35789999999875 44333333
Q ss_pred HHHhc-----CCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 145 DALRM-----RDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 145 ~l~~~-----np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+++. ....+++++||++|+|++++++++.+.
T Consensus 161 ~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~ 197 (203)
T cd01888 161 QIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKK 197 (203)
T ss_pred HHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHh
Confidence 33322 135689999999999999999998764
No 43
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.71 E-value=7.4e-08 Score=76.48 Aligned_cols=103 Identities=16% Similarity=0.118 Sum_probs=66.4
Q ss_pred CCCCEEEEeCCcch-h-hhccc-c--cccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCchhHhHHHH
Q 030407 72 FKADLLLCESGGDN-L-AANFS-R--ELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVM 142 (178)
Q Consensus 72 ~~~d~iiiEttG~~-~-~~~~~-~--~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~~~~~~~~ 142 (178)
.+.-+-||.|.|.. . ..+.. . ..+|.+++|+|+..+...... +......+-++++||+|+.++ ......
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~--~~~~~~ 159 (224)
T cd04165 82 SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPA--NILQET 159 (224)
T ss_pred CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCH--HHHHHH
Confidence 35678899999931 1 11111 1 136899999999876533221 111234456999999999876 444443
Q ss_pred HHHHHhc----------------------------CCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 143 ERDALRM----------------------------RDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 143 ~~~l~~~----------------------------np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+.+++. ....|+|.+||.+|+|+++|+++|..+
T Consensus 160 ~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l 221 (224)
T cd04165 160 LKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL 221 (224)
T ss_pred HHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence 3333221 113599999999999999999998754
No 44
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.71 E-value=4.7e-08 Score=73.58 Aligned_cols=99 Identities=15% Similarity=0.158 Sum_probs=63.9
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc------CCCC--CC-CceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR------KGGP--GI-TQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~------~~~~--qi-~~adiiviNK~Dl~~~~~~~~ 139 (178)
+..+.+++|.|..- ...+. ..+|++++|+|+++...... .... .. ..+-++|.||+|+... ...
T Consensus 42 ~~~i~l~Dt~G~~~~~~~~~~~~-~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~ 118 (169)
T cd04158 42 NLKFTIWDVGGKHKLRPLWKHYY-LNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA--LSV 118 (169)
T ss_pred CEEEEEEECCCChhcchHHHHHh-ccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC--CCH
Confidence 57788999999421 11122 34799999999987532211 0101 11 2457899999999755 344
Q ss_pred HHHHHHHHhcCC-----CCCEEEEecccCCCHHHHHHHHhh
Q 030407 140 AVMERDALRMRD-----GGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 140 ~~~~~~l~~~np-----~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
+.+.+.++ .+. ..+++++||++|.|++++|++|.+
T Consensus 119 ~~~~~~~~-~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~ 158 (169)
T cd04158 119 EEMTELLS-LHKLCCGRSWYIQGCDARSGMGLYEGLDWLSR 158 (169)
T ss_pred HHHHHHhC-CccccCCCcEEEEeCcCCCCCCHHHHHHHHHH
Confidence 44554443 211 136888999999999999999875
No 45
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.71 E-value=5e-08 Score=76.20 Aligned_cols=101 Identities=19% Similarity=0.110 Sum_probs=65.0
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCC------CCCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~------~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
.+.+-+.+|.|.. +...+. ..+|++|+|+|.++...... .+. ..-..+-++|.||+||.+......+
T Consensus 48 ~v~l~iwDtaGqe~~~~l~~~y~-~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~ 126 (202)
T cd04120 48 KIRLQIWDTAGQERFNSITSAYY-RSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQ 126 (202)
T ss_pred EEEEEEEeCCCchhhHHHHHHHh-cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHH
Confidence 4778899999941 222233 36799999999987643211 000 0112456999999999654112223
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
...++.++. ...++++|||++|+||+++|+++.+
T Consensus 127 ~~~~~a~~~-~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 127 QGEKFAQQI-TGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred HHHHHHHhc-CCCEEEEecCCCCCCHHHHHHHHHH
Confidence 333444332 2468999999999999999998764
No 46
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.70 E-value=7.5e-08 Score=71.20 Aligned_cols=101 Identities=12% Similarity=0.043 Sum_probs=63.5
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
.+.+-|++|.|.. +...+. ..+|.+++|+|.++...... .....-..+-++|+||+|+.+......
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~-~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~ 126 (163)
T cd04136 48 QCMLEILDTAGTEQFTAMRDLYI-KNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSR 126 (163)
T ss_pred EEEEEEEECCCccccchHHHHHh-hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecH
Confidence 3556688999931 112222 25799999999976432110 011112346689999999975411222
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+...+..++.+ .+++++||++|+|++++++++.+.
T Consensus 127 ~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 127 EEGQALARQWG--CPFYETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred HHHHHHHHHcC--CeEEEecCCCCCCHHHHHHHHHHh
Confidence 23333334333 689999999999999999998764
No 47
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=2.9e-08 Score=86.56 Aligned_cols=98 Identities=22% Similarity=0.214 Sum_probs=68.9
Q ss_pred CCEEEEeCCcchhh--hcccccc--cceEEEEEeCCCCCCCCcCC----CCCCCceeEEEEecCCCCCchhHhHHHHHHH
Q 030407 74 ADLLLCESGGDNLA--ANFSREL--ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERD 145 (178)
Q Consensus 74 ~d~iiiEttG~~~~--~~~~~~~--ad~~I~VvD~~~~~~~~~~~----~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~ 145 (178)
+-.=+|.|.| ... ....+.+ -+++++|||+.+|...+... .-....+-|.|+||+|+.++ +.+++...
T Consensus 125 ylLNLIDTPG-HvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~a---dpe~V~~q 200 (650)
T KOG0462|consen 125 YLLNLIDTPG-HVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSA---DPERVENQ 200 (650)
T ss_pred eEEEeecCCC-cccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCC---CHHHHHHH
Confidence 5566788888 111 1112222 38999999999987654321 11233467999999999877 55666777
Q ss_pred HHhcC--CCCCEEEEecccCCCHHHHHHHHhh
Q 030407 146 ALRMR--DGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 146 l~~~n--p~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
+.+++ |.++++.+|||+|.|++++++.+-+
T Consensus 201 ~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~ 232 (650)
T KOG0462|consen 201 LFELFDIPPAEVIYVSAKTGLNVEELLEAIIR 232 (650)
T ss_pred HHHHhcCCccceEEEEeccCccHHHHHHHHHh
Confidence 77663 7789999999999999999997643
No 48
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.70 E-value=5.2e-08 Score=72.23 Aligned_cols=100 Identities=15% Similarity=0.107 Sum_probs=63.5
Q ss_pred CCCEEEEeCCcch-hh---hcccccccceEEEEEeCCCCCCCC---cCC------CCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDN-LA---ANFSRELADYIIYIIDVSGGDKIP---RKG------GPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~---~~~~~~~ad~~I~VvD~~~~~~~~---~~~------~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
+..+.+++|.|.. .. ..+ ...++.+++|+|++...... ..+ ...-..+-++|+||+|+.++ ...
T Consensus 42 ~~~~~i~Dt~G~~~~~~~~~~~-~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~--~~~ 118 (158)
T cd04151 42 NLKFQVWDLGGQTSIRPYWRCY-YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA--LSE 118 (158)
T ss_pred CEEEEEEECCCCHHHHHHHHHH-hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC--CCH
Confidence 5678899999942 11 112 23579999999997643211 000 01123567999999999755 223
Q ss_pred HHHHHHHHhcC---CCCCEEEEecccCCCHHHHHHHHhh
Q 030407 140 AVMERDALRMR---DGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 140 ~~~~~~l~~~n---p~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
.++.+.+.... ...+++++||++|.|+++++++|.+
T Consensus 119 ~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 119 AEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 33333332111 1247999999999999999999864
No 49
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.70 E-value=2.4e-08 Score=76.67 Aligned_cols=102 Identities=18% Similarity=0.124 Sum_probs=65.7
Q ss_pred CCCCEEEEeCCcch--hhhcc-cccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCchhHhHHHHHH
Q 030407 72 FKADLLLCESGGDN--LAANF-SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMER 144 (178)
Q Consensus 72 ~~~d~iiiEttG~~--~~~~~-~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~ 144 (178)
....+-||.|.|-. ..... ....+|.+|+|+|+..+...+.. .......+-++++||+|+... +.++..+
T Consensus 68 ~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~---~~~~~~~ 144 (188)
T PF00009_consen 68 NNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEK---ELEEIIE 144 (188)
T ss_dssp SSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHH---HHHHHHH
T ss_pred cccceeecccccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhh---hHHHHHH
Confidence 35678899999931 01111 11246999999999877543221 111234457999999999833 3333333
Q ss_pred HHH-----hc--CC--CCCEEEEecccCCCHHHHHHHHhhh
Q 030407 145 DAL-----RM--RD--GGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 145 ~l~-----~~--np--~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.++ .. ++ ..|++++||++|.|+++|++.+.+.
T Consensus 145 ~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~ 185 (188)
T PF00009_consen 145 EIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVEL 185 (188)
T ss_dssp HHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHh
Confidence 332 22 11 3589999999999999999998765
No 50
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.69 E-value=5.7e-08 Score=72.51 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=62.1
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---CC----CC-C-CCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---KG----GP-G-ITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---~~----~~-q-i~~adiiviNK~Dl~~~~~~~~ 139 (178)
+..+.++++.|.. +...+. ..+|++++|+|+++...... .+ .. . -..+-++++||+|+... ...
T Consensus 43 ~~~~~l~D~~G~~~~~~~~~~~~-~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~ 119 (159)
T cd04150 43 NISFTVWDVGGQDKIRPLWRHYF-QNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSA 119 (159)
T ss_pred CEEEEEEECCCCHhHHHHHHHHh-cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCH
Confidence 5668899999942 112222 35799999999986432110 00 00 0 12456999999999654 222
Q ss_pred HHHHHHHH--hc-CCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 140 AVMERDAL--RM-RDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 140 ~~~~~~l~--~~-np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
+++.+.+. .. +....++++||++|+|++++|++|.+
T Consensus 120 ~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 120 AEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 33333332 11 12346789999999999999999864
No 51
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.69 E-value=6e-08 Score=74.10 Aligned_cols=102 Identities=16% Similarity=0.150 Sum_probs=64.5
Q ss_pred CCCCEEEEeCCcch-hh---hcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHh
Q 030407 72 FKADLLLCESGGDN-LA---ANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGAD 138 (178)
Q Consensus 72 ~~~d~iiiEttG~~-~~---~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~ 138 (178)
.+..+-+++|.|.. .. ..+ ...+|++++|+|+++...... .+......+-++|+||+|+... ..
T Consensus 50 ~~~~l~l~Dt~G~~~~~~~~~~~-~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~ 126 (183)
T cd04152 50 KGITFHFWDVGGQEKLRPLWKSY-TRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LS 126 (183)
T ss_pred CceEEEEEECCCcHhHHHHHHHH-hccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CC
Confidence 35678899999942 11 122 225799999999987532110 1111234577999999999754 22
Q ss_pred HHHHHHHHH--hcC--CCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 139 LAVMERDAL--RMR--DGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 139 ~~~~~~~l~--~~n--p~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+.+.+.+. +.. ...+++++||++|+|+++++++|.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~ 168 (183)
T cd04152 127 VSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEM 168 (183)
T ss_pred HHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHH
Confidence 233333332 121 12468999999999999999988754
No 52
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.68 E-value=1.1e-07 Score=73.69 Aligned_cols=102 Identities=18% Similarity=0.065 Sum_probs=67.3
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc------------CCCCCCCceeEEEEecCCCCCchh
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR------------KGGPGITQADLLVINKTDLASAIG 136 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~------------~~~~qi~~adiiviNK~Dl~~~~~ 136 (178)
.+.+.+++|+|.. +...+. ..++++++|+|.+....... .....-..+-++|+||+|+.+...
T Consensus 49 ~~~l~l~Dt~G~~~~~~~~~~~~-~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~ 127 (201)
T cd04107 49 VVRLQLWDIAGQERFGGMTRVYY-RGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLA 127 (201)
T ss_pred EEEEEEEECCCchhhhhhHHHHh-CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccc
Confidence 4678899999941 112222 35799999999987532211 011112346799999999973211
Q ss_pred HhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 137 ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 137 ~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+.+.+..+..+ ..+++++||++|+|++++|++|.+.
T Consensus 128 ~~~~~~~~~~~~~~-~~~~~e~Sak~~~~v~e~f~~l~~~ 166 (201)
T cd04107 128 KDGEQMDQFCKENG-FIGWFETSAKEGINIEEAMRFLVKN 166 (201)
T ss_pred cCHHHHHHHHHHcC-CceEEEEeCCCCCCHHHHHHHHHHH
Confidence 34455666665442 3589999999999999999988654
No 53
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.68 E-value=6e-08 Score=71.71 Aligned_cols=102 Identities=17% Similarity=0.129 Sum_probs=63.9
Q ss_pred CCCEEEEeCCcch-hhhc--ccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDN-LAAN--FSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~~~--~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
+..+.++++.|.. .... .....+|.+++|+|+++...... .....-..+-++|+||+|+... ...+
T Consensus 43 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~ 120 (160)
T cd04156 43 HLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAE 120 (160)
T ss_pred ceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHH
Confidence 4678899999932 1111 11224799999999987542111 0011124567999999999654 2333
Q ss_pred HHHHHHH--hcC--CCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDAL--RMR--DGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~--~~n--p~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+...++ ... +..+++++||++|+|+++++++|.++
T Consensus 121 ~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~~ 160 (160)
T cd04156 121 EITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLASF 160 (160)
T ss_pred HHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhcC
Confidence 4433332 111 23469999999999999999998753
No 54
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.68 E-value=6.6e-08 Score=73.17 Aligned_cols=100 Identities=18% Similarity=0.129 Sum_probs=64.3
Q ss_pred CCCEEEEeCCcch-hh---hcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDN-LA---ANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~---~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
+..+.++++.|.. .. ..+. ..+|++++|+|+++...... .....-..+-++++||+|+... ...
T Consensus 58 ~~~~~l~D~~G~~~~~~~~~~~~-~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~ 134 (174)
T cd04153 58 NIRFLMWDIGGQESLRSSWNTYY-TNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTP 134 (174)
T ss_pred CeEEEEEECCCCHHHHHHHHHHh-hcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCH
Confidence 5779999999942 11 1122 35799999999987543211 0111123467999999999754 233
Q ss_pred HHHHHHHHh---cCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 140 AVMERDALR---MRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 140 ~~~~~~l~~---~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
+++.+.+.. .+...+++++||++|+|+++++++|.+
T Consensus 135 ~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 135 AEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred HHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 334333321 122347999999999999999999864
No 55
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.66 E-value=8.4e-08 Score=72.12 Aligned_cols=100 Identities=11% Similarity=-0.012 Sum_probs=64.7
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCCCC----C-CceeEEEEecCCCCCchhHhHHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGGPG----I-TQADLLVINKTDLASAIGADLAV 141 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~~q----i-~~adiiviNK~Dl~~~~~~~~~~ 141 (178)
.+...+++|.|.. +...+. ..+|++|+|+|.++...... .+... . ..+-++|+||+|+... .....
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~--~~~~~ 124 (166)
T cd00877 48 KIRFNVWDTAGQEKFGGLRDGYY-IGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDR--KVKAK 124 (166)
T ss_pred EEEEEEEECCCChhhccccHHHh-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccc--cCCHH
Confidence 5778899999942 112222 24799999999987543211 00000 1 4667999999999744 22222
Q ss_pred HHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 142 MERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 142 ~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
..+..+. ...+++++||++|+|++++|++|.+.+
T Consensus 125 ~~~~~~~--~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 125 QITFHRK--KNLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred HHHHHHH--cCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 2233222 245899999999999999999987643
No 56
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.65 E-value=9e-08 Score=72.61 Aligned_cols=102 Identities=16% Similarity=0.137 Sum_probs=63.8
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---C---C-CC-C-CCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---K---G-GP-G-ITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---~---~-~~-q-i~~adiiviNK~Dl~~~~~~~~ 139 (178)
+..+.++++.|.. +...+. ..+|++|+|+|+++...... . . .. . -..+-+||+||+|+... ...
T Consensus 56 ~~~l~l~D~~G~~~~~~~~~~~~-~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~ 132 (175)
T smart00177 56 NISFTVWDVGGQDKIRPLWRHYY-TNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MKA 132 (175)
T ss_pred CEEEEEEECCCChhhHHHHHHHh-CCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCH
Confidence 5788999999931 112222 35799999999987532211 0 0 01 0 12457999999999754 222
Q ss_pred HHHHHHHHh--c-CCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 140 AVMERDALR--M-RDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 140 ~~~~~~l~~--~-np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
+++.+.+.. . .....++++||++|+|+++++++|.+.+
T Consensus 133 ~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 133 AEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred HHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 333333221 1 1223577899999999999999987653
No 57
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.65 E-value=9.4e-08 Score=83.58 Aligned_cols=102 Identities=16% Similarity=0.050 Sum_probs=65.7
Q ss_pred CCCEEEEeCCcch----h---hhcc-------cccccceEEEEEeCCCCCCCCcC-CCC---CCCceeEEEEecCCCCCc
Q 030407 73 KADLLLCESGGDN----L---AANF-------SRELADYIIYIIDVSGGDKIPRK-GGP---GITQADLLVINKTDLASA 134 (178)
Q Consensus 73 ~~d~iiiEttG~~----~---~~~~-------~~~~ad~~I~VvD~~~~~~~~~~-~~~---qi~~adiiviNK~Dl~~~ 134 (178)
+..+.|+.|.|.. . ...+ ....+|.+++|+|++++...... ... .-..+-++|+||+|+.++
T Consensus 258 ~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~ 337 (472)
T PRK03003 258 GKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDE 337 (472)
T ss_pred CEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCh
Confidence 3456899999941 0 0111 11247999999999876543221 000 123467999999999865
Q ss_pred hhHhHHHHHHHHHhc---CCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 135 IGADLAVMERDALRM---RDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 135 ~~~~~~~~~~~l~~~---np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.....+.+.+++. .+.++++++||++|.|++++|+.+.+.
T Consensus 338 --~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~ 380 (472)
T PRK03003 338 --DRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETA 380 (472)
T ss_pred --hHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3333333333321 245799999999999999999988764
No 58
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.65 E-value=1.2e-07 Score=70.45 Aligned_cols=78 Identities=15% Similarity=0.216 Sum_probs=53.1
Q ss_pred cceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHH
Q 030407 95 ADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTL 170 (178)
Q Consensus 95 ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~ 170 (178)
+|.+++|+|++++...... +......+-++|+||+|+.++ ...+.... +.+ ....+++++||++|+|+++|+
T Consensus 13 aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~--~~~~~~~~-~~~-~~~~~~~~iSa~~~~gi~~L~ 88 (156)
T cd01859 13 SDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPK--EVLEKWKS-IKE-SEGIPVVYVSAKERLGTKILR 88 (156)
T ss_pred CCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCH--HHHHHHHH-HHH-hCCCcEEEEEccccccHHHHH
Confidence 6899999999765432211 111124567999999999765 44333322 222 244689999999999999999
Q ss_pred HHHhhh
Q 030407 171 SITHYI 176 (178)
Q Consensus 171 ~~l~~~ 176 (178)
+.+.+.
T Consensus 89 ~~l~~~ 94 (156)
T cd01859 89 RTIKEL 94 (156)
T ss_pred HHHHHH
Confidence 988764
No 59
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.64 E-value=1.1e-07 Score=70.69 Aligned_cols=102 Identities=11% Similarity=0.037 Sum_probs=63.8
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
.+.+-+++|+|.. +...+ ...+|++++|+|.+....... .....-..+-++++||+|+.+......
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~-~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~ 126 (164)
T cd04175 48 QCMLEILDTAGTEQFTAMRDLY-MKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGK 126 (164)
T ss_pred EEEEEEEECCCcccchhHHHHH-HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcH
Confidence 4566689999931 11112 224799999999876432110 011112346799999999975411122
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
+...+..++.+ .+++++||++|.|++++|+++.+..
T Consensus 127 ~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 127 EQGQNLARQWG--CAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred HHHHHHHHHhC--CEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 33333334333 5899999999999999999987643
No 60
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.62 E-value=1.4e-07 Score=74.68 Aligned_cols=103 Identities=14% Similarity=0.034 Sum_probs=65.9
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---CCC-----CCCCceeEEEEecCCCCC-------
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---KGG-----PGITQADLLVINKTDLAS------- 133 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---~~~-----~qi~~adiiviNK~Dl~~------- 133 (178)
.+.+-|++|.|.. +...+. ..+|++|+|+|+++...... .+. .--..+-++|.||+||.+
T Consensus 43 ~~~l~iwDt~G~e~~~~l~~~~~-~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~ 121 (220)
T cd04126 43 PYNISIWDTAGREQFHGLGSMYC-RGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQ 121 (220)
T ss_pred EEEEEEEeCCCcccchhhHHHHh-ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccc
Confidence 4678899999931 112222 35799999999987532211 000 001245699999999975
Q ss_pred ------------chhHhHHHHHHHHHhcCC------------CCCEEEEecccCCCHHHHHHHHhhh
Q 030407 134 ------------AIGADLAVMERDALRMRD------------GGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 134 ------------~~~~~~~~~~~~l~~~np------------~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
......++..++.++.+. ..+++++||++|+||+++|+.+.+.
T Consensus 122 ~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~ 188 (220)
T cd04126 122 EKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNL 188 (220)
T ss_pred cccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHH
Confidence 111223445555555431 2579999999999999999987653
No 61
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.62 E-value=1.3e-07 Score=72.41 Aligned_cols=102 Identities=15% Similarity=0.112 Sum_probs=65.3
Q ss_pred CCCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc------CC--CCC-CCceeEEEEecCCCCCchhHh
Q 030407 72 FKADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR------KG--GPG-ITQADLLVINKTDLASAIGAD 138 (178)
Q Consensus 72 ~~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~------~~--~~q-i~~adiiviNK~Dl~~~~~~~ 138 (178)
.+..+.++++.|.. +...+. ..+|++|+|+|+++...... .. ... -..+-++++||.|+... ..
T Consensus 59 ~~~~~~i~D~~Gq~~~~~~~~~~~-~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~ 135 (181)
T PLN00223 59 KNISFTVWDVGGQDKIRPLWRHYF-QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MN 135 (181)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHh-ccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CC
Confidence 35778999999931 112222 35799999999987543211 00 011 13467999999999766 44
Q ss_pred HHHHHHHHHhcC--CC-CCEEEEecccCCCHHHHHHHHhhh
Q 030407 139 LAVMERDALRMR--DG-GPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 139 ~~~~~~~l~~~n--p~-a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+.+.+.+.-.+ +. ..++++||++|+|++++|++|.+.
T Consensus 136 ~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 176 (181)
T PLN00223 136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
T ss_pred HHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHH
Confidence 455555543111 11 245679999999999999998654
No 62
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.62 E-value=1.9e-07 Score=68.30 Aligned_cols=98 Identities=20% Similarity=0.165 Sum_probs=64.3
Q ss_pred CCCEEEEeCCcchhhhc---------c--cccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCchhH
Q 030407 73 KADLLLCESGGDNLAAN---------F--SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGA 137 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~~---------~--~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~~~ 137 (178)
+..+.+++|.|..-... . ....+|.+++|+|+.++...... +......+-++|+||+|+.+. .
T Consensus 44 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~ 121 (157)
T cd01894 44 GREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKE--E 121 (157)
T ss_pred CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCCh--H
Confidence 46789999999421110 0 11246999999999765432211 111234567999999999876 3
Q ss_pred hHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 138 DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 138 ~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.. ...+.+. ...+++++||++|.|++++++++.+.
T Consensus 122 ~~---~~~~~~~-~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 122 DE---AAEFYSL-GFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred HH---HHHHHhc-CCCCeEEEecccCCCHHHHHHHHHhh
Confidence 32 2223333 23478999999999999999998653
No 63
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.62 E-value=1.5e-07 Score=69.79 Aligned_cols=102 Identities=14% Similarity=0.086 Sum_probs=64.6
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--C-------CCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--K-------GGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~-------~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
.+.+-+++|.|.. +...+. ..++++++|+|+++...... . .......+-++|+||+|+.+......
T Consensus 47 ~~~l~i~Dt~g~~~~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~ 125 (164)
T smart00173 47 VCLLDILDTAGQEEFSAMRDQYM-RTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVST 125 (164)
T ss_pred EEEEEEEECCCcccchHHHHHHH-hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcH
Confidence 3566789999931 112222 24699999999986432111 0 00111346689999999975411222
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
+...+..+.. ..+++++||++|.|++++++.+.+..
T Consensus 126 ~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 126 EEGKELARQW--GCPFLETSAKERVNVDEAFYDLVREI 161 (164)
T ss_pred HHHHHHHHHc--CCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 3444444443 36899999999999999999887643
No 64
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.62 E-value=1.7e-07 Score=69.27 Aligned_cols=100 Identities=11% Similarity=0.027 Sum_probs=65.1
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---------CCCC----CCCceeEEEEecCCCCCch
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---------KGGP----GITQADLLVINKTDLASAI 135 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~----qi~~adiiviNK~Dl~~~~ 135 (178)
.+.+-+++|.|.. +...+. ..+|++++|+|+++...... .+.. .-..+-++|+||+|+.++.
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~-~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 126 (168)
T cd04119 48 EVRVNFFDLSGHPEYLEVRNEFY-KDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHR 126 (168)
T ss_pred EEEEEEEECCccHHHHHHHHHHh-ccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccccc
Confidence 4678899999942 112222 35799999999986532110 0110 1235679999999997431
Q ss_pred hHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 136 GADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 136 ~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
....+...++.++.+ .+++++||++|+|+++++++|.+
T Consensus 127 ~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~ 164 (168)
T cd04119 127 AVSEDEGRLWAESKG--FKYFETSACTGEGVNEMFQTLFS 164 (168)
T ss_pred ccCHHHHHHHHHHcC--CeEEEEECCCCCCHHHHHHHHHH
Confidence 123344444555432 68999999999999999998764
No 65
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.62 E-value=1.4e-07 Score=86.34 Aligned_cols=102 Identities=17% Similarity=0.023 Sum_probs=68.8
Q ss_pred CCCEEEEeCCcch-----h--hhcc-------cccccceEEEEEeCCCCCCCCcC-CC---CCCCceeEEEEecCCCCCc
Q 030407 73 KADLLLCESGGDN-----L--AANF-------SRELADYIIYIIDVSGGDKIPRK-GG---PGITQADLLVINKTDLASA 134 (178)
Q Consensus 73 ~~d~iiiEttG~~-----~--~~~~-------~~~~ad~~I~VvD~~~~~~~~~~-~~---~qi~~adiiviNK~Dl~~~ 134 (178)
+.++.|+.|.|.. . ...+ ....+|.+++|+|++.+...+.. .. .....+-++|+||+|+.++
T Consensus 497 ~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 497 GEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDE 576 (712)
T ss_pred CCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCCh
Confidence 4567899999941 0 0111 11246999999999887543221 00 1124578999999999876
Q ss_pred hhHhHHHHHHHHHhc---CCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 135 IGADLAVMERDALRM---RDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 135 ~~~~~~~~~~~l~~~---np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+.+.+.++.. .+.++++++||++|.|++++++.+.+.
T Consensus 577 --~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~ 619 (712)
T PRK09518 577 --FRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEA 619 (712)
T ss_pred --hHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4445555555432 256899999999999999999987654
No 66
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.61 E-value=1.6e-07 Score=69.30 Aligned_cols=100 Identities=16% Similarity=0.095 Sum_probs=66.8
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
+..+.++++.|..- ...+. ..+|.+++|+|++....... .....-..+-++++||+|+... ...
T Consensus 42 ~~~~~i~D~~G~~~~~~~~~~~~-~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~ 118 (158)
T cd00878 42 NVSFTVWDVGGQDKIRPLWKHYY-ENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA--LSV 118 (158)
T ss_pred CEEEEEEECCCChhhHHHHHHHh-ccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc--cCH
Confidence 57899999999311 11111 24699999999987532110 0001123466999999999876 444
Q ss_pred HHHHHHHHhc---CCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 140 AVMERDALRM---RDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 140 ~~~~~~l~~~---np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
+++.+.++.. ....+++++||++|.|+++++++|..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 119 SELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 5555555432 12458999999999999999999865
No 67
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.61 E-value=1.7e-07 Score=69.86 Aligned_cols=77 Identities=17% Similarity=-0.063 Sum_probs=52.4
Q ss_pred ceEEEEEeCCCCCCCCcC-C----CCCCCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHH
Q 030407 96 DYIIYIIDVSGGDKIPRK-G----GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTL 170 (178)
Q Consensus 96 d~~I~VvD~~~~~~~~~~-~----~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~ 170 (178)
|.+++|+|+..+...... . ......+-++|+||+|+.++ ++.......+++.. ..+++.+||++|.|+++|.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~--~~~~~~~~~~~~~~-~~~ii~vSa~~~~gi~~L~ 77 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPK--EVLRKWLAYLRHSY-PTIPFKISATNGQGIEKKE 77 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCH--HHHHHHHHHHHhhC-CceEEEEeccCCcChhhHH
Confidence 678999999775433211 1 11234567999999999876 54443333344332 4679999999999999999
Q ss_pred HHHhh
Q 030407 171 SITHY 175 (178)
Q Consensus 171 ~~l~~ 175 (178)
+.+.+
T Consensus 78 ~~i~~ 82 (155)
T cd01849 78 SAFTK 82 (155)
T ss_pred HHHHH
Confidence 98754
No 68
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.60 E-value=1.1e-07 Score=69.47 Aligned_cols=96 Identities=21% Similarity=0.196 Sum_probs=65.9
Q ss_pred CCCEEEEeCCcchhhh----------c-ccccccceEEEEEeCCCCCCCCc--CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDNLAA----------N-FSRELADYIIYIIDVSGGDKIPR--KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~----------~-~~~~~ad~~I~VvD~~~~~~~~~--~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
+..+.+++|.|..-.. . .....+|.+++|+|++....... ........+.++|+||+|+.+. ...
T Consensus 48 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~--~~~ 125 (157)
T cd04164 48 GIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPD--SEL 125 (157)
T ss_pred CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCc--ccc
Confidence 4678999999941100 0 01124699999999986443221 1111345678999999999877 333
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
.......+++++||++|.|+++|+++|...+
T Consensus 126 -------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 126 -------LSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred -------ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 1223456999999999999999999988765
No 69
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.60 E-value=1.3e-07 Score=69.52 Aligned_cols=101 Identities=14% Similarity=0.108 Sum_probs=65.0
Q ss_pred CCCEEEEeCCcchh----------hhcccc-cccceEEEEEeCCCCCCCCcCC--CCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDNL----------AANFSR-ELADYIIYIIDVSGGDKIPRKG--GPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~----------~~~~~~-~~ad~~I~VvD~~~~~~~~~~~--~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
+.++.+++|.|..- ...+.. ..+|.+++|+|+.......... ......+-++|+||+|+.+. ...
T Consensus 42 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~--~~~ 119 (158)
T cd01879 42 GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNLYLTLQLLELGLPVVVALNMIDEAEK--RGI 119 (158)
T ss_pred CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHHHHHHHHHHcCCCEEEEEehhhhccc--ccc
Confidence 45789999999421 111111 2579999999998653221110 01134567999999999765 322
Q ss_pred H-HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 140 A-VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 140 ~-~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
. ......+.. +.+++++||++|+|++++++++.+.+
T Consensus 120 ~~~~~~~~~~~--~~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 120 KIDLDKLSELL--GVPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred hhhHHHHHHhh--CCCeEEEEccCCCCHHHHHHHHHHHh
Confidence 2 222222322 35899999999999999999987653
No 70
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.60 E-value=1.3e-07 Score=72.35 Aligned_cols=100 Identities=14% Similarity=0.070 Sum_probs=65.5
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc------C---CCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR------K---GGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~------~---~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
++.+.++++.|..- ...+. ..+|++++|+|+++...... . ....-..+-++|+||+|+... ...
T Consensus 60 ~~~~~~~D~~G~~~~~~~~~~~~-~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~--~~~ 136 (184)
T smart00178 60 NIKFTTFDLGGHQQARRLWKDYF-PEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA--ASE 136 (184)
T ss_pred CEEEEEEECCCCHHHHHHHHHHh-CCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC--CCH
Confidence 57789999999421 11222 35799999999987532111 0 001123467999999999654 334
Q ss_pred HHHHHHHHhc----------CCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 140 AVMERDALRM----------RDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 140 ~~~~~~l~~~----------np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
+++.+.+.-. .+...++++||++|+|+++++++|.+
T Consensus 137 ~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 137 DELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred HHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 4555554211 12346999999999999999999865
No 71
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.60 E-value=1.7e-07 Score=72.43 Aligned_cols=101 Identities=19% Similarity=0.124 Sum_probs=67.2
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCCC-----CCCceeEEEEecCCCCCchhHhHHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGGP-----GITQADLLVINKTDLASAIGADLAV 141 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~~-----qi~~adiiviNK~Dl~~~~~~~~~~ 141 (178)
.+.+-+++|+|.. +...+. ..+|++++|+|.++...... .+.. .-..+-++|.||.||........++
T Consensus 54 ~~~l~iwDt~G~~~~~~l~~~~~-~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~ 132 (189)
T cd04121 54 RVKLQLWDTSGQGRFCTIFRSYS-RGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQ 132 (189)
T ss_pred EEEEEEEeCCCcHHHHHHHHHHh-cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHH
Confidence 4677789999942 112222 36799999999987543211 0000 0134679999999996531123445
Q ss_pred HHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 142 MERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 142 ~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+++.++. ..+++++||++|.|++++|+++.+.
T Consensus 133 ~~~~a~~~--~~~~~e~SAk~g~~V~~~F~~l~~~ 165 (189)
T cd04121 133 AQAYAERN--GMTFFEVSPLCNFNITESFTELARI 165 (189)
T ss_pred HHHHHHHc--CCEEEEecCCCCCCHHHHHHHHHHH
Confidence 56666654 3589999999999999999988753
No 72
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.60 E-value=8.6e-08 Score=71.58 Aligned_cols=80 Identities=14% Similarity=0.017 Sum_probs=54.8
Q ss_pred ccceEEEEEeCCCCCCCCc-CCCC---CC--CceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHH
Q 030407 94 LADYIIYIIDVSGGDKIPR-KGGP---GI--TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 167 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~-~~~~---qi--~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~ 167 (178)
.+|.+++|+|+..+..... .... .. ..+-++|+||+|+.++ ++.....+.+++..+.. ++++||++|.|++
T Consensus 8 ~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~--~~~~~~~~~~~~~~~~~-~~~iSa~~~~~~~ 84 (157)
T cd01858 8 SSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPT--WVTARWVKILSKEYPTI-AFHASINNPFGKG 84 (157)
T ss_pred hCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCH--HHHHHHHHHHhcCCcEE-EEEeeccccccHH
Confidence 4699999999987532211 1101 11 1457999999999877 55555555555444432 6889999999999
Q ss_pred HHHHHHhhh
Q 030407 168 FTLSITHYI 176 (178)
Q Consensus 168 el~~~l~~~ 176 (178)
+|++.+.+.
T Consensus 85 ~L~~~l~~~ 93 (157)
T cd01858 85 SLIQLLRQF 93 (157)
T ss_pred HHHHHHHHH
Confidence 999988754
No 73
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.59 E-value=1.9e-07 Score=68.85 Aligned_cols=101 Identities=13% Similarity=0.114 Sum_probs=64.6
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCC---c------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIP---R------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~---~------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
++.+.+++|.|.. ....+. ..++.+++++|........ . ........+-++|+||+|+.+......
T Consensus 47 ~~~~~i~D~~g~~~~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~ 125 (164)
T cd04139 47 DVQLNILDTAGQEDYAAIRDNYH-RSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSS 125 (164)
T ss_pred EEEEEEEECCChhhhhHHHHHHh-hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCH
Confidence 4678899999931 111222 2458899999987643210 0 011123567799999999976211233
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+......++. ..+++++||++|+|++++++.+.+.
T Consensus 126 ~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 160 (164)
T cd04139 126 EEAANLARQW--GVPYVETSAKTRQNVEKAFYDLVRE 160 (164)
T ss_pred HHHHHHHHHh--CCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 4444444443 3589999999999999999987653
No 74
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.59 E-value=2.2e-07 Score=68.27 Aligned_cols=99 Identities=14% Similarity=0.118 Sum_probs=62.6
Q ss_pred CEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhHHH
Q 030407 75 DLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLAV 141 (178)
Q Consensus 75 d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~~~ 141 (178)
.+-+++|.|.. +...+. ..++.+++|+|.++...... .....-..+-++|+||+|+.+.. ...+.
T Consensus 50 ~~~i~Dt~G~~~~~~l~~~~~-~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-~~~~~ 127 (162)
T cd04138 50 LLDILDTAGQEEYSAMRDQYM-RTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAART-VSSRQ 127 (162)
T ss_pred EEEEEECCCCcchHHHHHHHH-hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccce-ecHHH
Confidence 34568999931 122222 24689999999876432111 01111234669999999997641 22334
Q ss_pred HHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 142 MERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 142 ~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
..+..+.. ..+++++||++|+|++++|+++.+..
T Consensus 128 ~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 128 GQDLAKSY--GIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred HHHHHHHh--CCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 44444433 35899999999999999999987653
No 75
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.59 E-value=2e-07 Score=71.15 Aligned_cols=101 Identities=14% Similarity=0.103 Sum_probs=65.9
Q ss_pred CCCEEEEeCCcchhh----hcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDNLA----ANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~~----~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
+..+.++++.|.... ..+. ..++.+++|+|+++...... ........+-++++||+|+... ...
T Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~-~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~--~~~ 138 (190)
T cd00879 62 NIKFKTFDLGGHEQARRLWKDYF-PEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA--VSE 138 (190)
T ss_pred CEEEEEEECCCCHHHHHHHHHHh-ccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC--cCH
Confidence 456788999993211 1122 24699999999976432110 0111123567999999999755 445
Q ss_pred HHHHHHHHhcC--------------CCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMR--------------DGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~n--------------p~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+++.+.++... -..+++++||++|+|++++|++|.+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 139 EELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred HHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 56666654211 12468999999999999999998753
No 76
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.58 E-value=6.9e-08 Score=72.31 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=65.5
Q ss_pred CCCCEEEEeCCcchhh----hcccccccceEEEEEeCCCCCCCCc---CCCC-----CCCceeEEEEecCCCCCchhHhH
Q 030407 72 FKADLLLCESGGDNLA----ANFSRELADYIIYIIDVSGGDKIPR---KGGP-----GITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~----~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~-----qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
...++.++.|.|.... ..+ ...+|.+++|+|+++...... .+.+ ....+-++|+||+|+.+. ...
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~~~-~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~--~~~ 121 (166)
T cd01893 45 ERVPTTIVDTSSRPQDRANLAAE-IRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDG--SSQ 121 (166)
T ss_pred CeEEEEEEeCCCchhhhHHHhhh-cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccc--cch
Confidence 3577889999994211 111 135799999999987543221 1110 014567999999999765 221
Q ss_pred ---HH-HHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 140 ---AV-MERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 140 ---~~-~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
+. +....+..+...+++++||++|.|++++|+.+.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 122 AGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred hHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHh
Confidence 12 222222222224899999999999999999988765
No 77
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.58 E-value=2.2e-07 Score=70.28 Aligned_cols=101 Identities=16% Similarity=0.037 Sum_probs=65.1
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
...+-+++|.|.. +...+. ..+|++++|+|+++...... .....-..+-++|+||+|+.+......
T Consensus 49 ~~~l~i~Dt~G~~~~~~l~~~~~-~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~ 127 (172)
T cd04141 49 PALLDILDTAGQAEFTAMRDQYM-RCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTT 127 (172)
T ss_pred EEEEEEEeCCCchhhHHHhHHHh-hcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCH
Confidence 4667789999931 112222 24799999999987643221 001112346799999999865311222
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+...+..++. +.+++++||++|.||+++|+++.+.
T Consensus 128 ~~~~~~a~~~--~~~~~e~Sa~~~~~v~~~f~~l~~~ 162 (172)
T cd04141 128 EEGRNLAREF--NCPFFETSAALRHYIDDAFHGLVRE 162 (172)
T ss_pred HHHHHHHHHh--CCEEEEEecCCCCCHHHHHHHHHHH
Confidence 3344444443 4689999999999999999988653
No 78
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.58 E-value=1.1e-07 Score=70.63 Aligned_cols=102 Identities=21% Similarity=0.142 Sum_probs=64.3
Q ss_pred CCCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCC--cCCCC-----CCCceeEEEEecCCCCCchhHhHH
Q 030407 72 FKADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIP--RKGGP-----GITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 72 ~~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~--~~~~~-----qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
....+.+++|+|... ...+. ..+|.+++|+|.++..... ..+.. ....+-++|+||+|+.+......+
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 128 (164)
T cd04101 50 NTVELFIFDSAGQELYSDMVSNYW-ESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDA 128 (164)
T ss_pred CEEEEEEEECCCHHHHHHHHHHHh-CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHH
Confidence 357899999999321 11222 2479999999998753221 00100 123567999999999765111112
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
......+.. ..+++++||++|.|++++++.+.+.
T Consensus 129 ~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 129 QAQAFAQAN--QLKFFKTSALRGVGYEEPFESLARA 162 (164)
T ss_pred HHHHHHHHc--CCeEEEEeCCCCCChHHHHHHHHHH
Confidence 222222222 3579999999999999999988764
No 79
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.58 E-value=3e-07 Score=68.03 Aligned_cols=101 Identities=14% Similarity=0.104 Sum_probs=64.4
Q ss_pred CCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCC-------CCCCceeEEEEecCCCCCchhHhHH
Q 030407 74 ADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGG-------PGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 74 ~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~-------~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
+.+-+++|.|.. +...+. ..+|.+++|+|+++...... .+. .--..+-++++||+|+........+
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~~~-~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~ 128 (164)
T cd04145 50 AILDILDTAGQEEFSAMREQYM-RTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSRE 128 (164)
T ss_pred EEEEEEECCCCcchhHHHHHHH-hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHH
Confidence 567789999931 111222 24799999999987532111 000 0013467999999999754111233
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
...+..+.. ..+++++||++|+|++++|+.+.+.+
T Consensus 129 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 129 EGQELARKL--KIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred HHHHHHHHc--CCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 444444443 35899999999999999999987643
No 80
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.58 E-value=3.5e-07 Score=67.65 Aligned_cols=99 Identities=18% Similarity=0.124 Sum_probs=65.4
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
...+.+++|.|.. +...+ ...+|.+++|+|.++...... .+...-..+.++|+||+|+.... ...
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~-~~~ 125 (161)
T cd01863 48 KVKLAIWDTAGQERFRTLTSSY-YRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENRE-VTR 125 (161)
T ss_pred EEEEEEEECCCchhhhhhhHHH-hCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccc-cCH
Confidence 4678999999931 11111 124799999999876532211 11122345679999999997331 233
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
+...+..+.. ..+++++||++|+|++++++.+.+
T Consensus 126 ~~~~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 126 EEGLKFARKH--NMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred HHHHHHHHHc--CCEEEEEecCCCCCHHHHHHHHHH
Confidence 4455555543 468999999999999999998754
No 81
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.57 E-value=2.2e-07 Score=77.74 Aligned_cols=101 Identities=21% Similarity=0.227 Sum_probs=67.3
Q ss_pred CCEEEEeCCcch--------hhhcccc--cccceEEEEEeCCCCC--CCCc----------CCCC-CCCceeEEEEecCC
Q 030407 74 ADLLLCESGGDN--------LAANFSR--ELADYIIYIIDVSGGD--KIPR----------KGGP-GITQADLLVINKTD 130 (178)
Q Consensus 74 ~d~iiiEttG~~--------~~~~~~~--~~ad~~I~VvD~~~~~--~~~~----------~~~~-qi~~adiiviNK~D 130 (178)
..+.|+.+.|.. +...|.. ..++.+++|+|++... +... .+.. ....+-++|+||+|
T Consensus 205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~D 284 (329)
T TIGR02729 205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKID 284 (329)
T ss_pred eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCcc
Confidence 568899999941 1112222 2368999999998642 1100 1111 13457799999999
Q ss_pred CCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 131 LASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 131 l~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
+.++ ...+.+.+.+.+.. ..+++++||++|+|++++++++.+..
T Consensus 285 L~~~--~~~~~~~~~l~~~~-~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 285 LLDE--EELAELLKELKKAL-GKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred CCCh--HHHHHHHHHHHHHc-CCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 9876 55555555554332 25899999999999999999987764
No 82
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.57 E-value=2.4e-07 Score=69.15 Aligned_cols=100 Identities=14% Similarity=0.066 Sum_probs=64.7
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCC------CCCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~------~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
...+-+++|+|.. +...+. ..++++++|+|.++...... .+. ..-..+-++|.||+|+.++.....+
T Consensus 50 ~~~l~i~Dt~G~~~~~~~~~~~~-~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~ 128 (166)
T cd04122 50 KIKLQIWDTAGQERFRAVTRSYY-RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYE 128 (166)
T ss_pred EEEEEEEECCCcHHHHHHHHHHh-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHH
Confidence 4677899999942 111222 35799999999987542211 000 0112457999999999765212234
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
...+..+.. ..+++++||++|+|++++|+.+..
T Consensus 129 ~~~~~~~~~--~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 129 EAKQFADEN--GLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred HHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHH
Confidence 455555543 468999999999999999987754
No 83
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.57 E-value=3.8e-07 Score=76.56 Aligned_cols=100 Identities=19% Similarity=0.275 Sum_probs=64.6
Q ss_pred CCEEEEeCCcch--------hhhcccc--cccceEEEEEeCCCCCCCCc---------CCCC-CCCceeEEEEecCCCCC
Q 030407 74 ADLLLCESGGDN--------LAANFSR--ELADYIIYIIDVSGGDKIPR---------KGGP-GITQADLLVINKTDLAS 133 (178)
Q Consensus 74 ~d~iiiEttG~~--------~~~~~~~--~~ad~~I~VvD~~~~~~~~~---------~~~~-qi~~adiiviNK~Dl~~ 133 (178)
..++++++.|.. +...|.. ..++.+++|+|+++.+.... .+.. ....+-++|+||+|+.+
T Consensus 206 ~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 206 KSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred cEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 458999999941 1122222 23689999999986532110 1111 13467899999999986
Q ss_pred chhHhHH--HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 134 AIGADLA--VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 134 ~~~~~~~--~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
+ .+.. ......+.. ..+++++||++|+|+++++++|.+.+
T Consensus 286 ~--~~~~~~~~~~~~~~~--~~~i~~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 286 E--EEEREKRAALELAAL--GGPVFLISAVTGEGLDELLRALWELL 327 (335)
T ss_pred c--hhHHHHHHHHHHHhc--CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 6 3222 233333322 36899999999999999999987653
No 84
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.57 E-value=2.3e-07 Score=69.32 Aligned_cols=102 Identities=11% Similarity=-0.044 Sum_probs=64.2
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--C-------CCC--CCCceeEEEEecCCCCCchhH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--K-------GGP--GITQADLLVINKTDLASAIGA 137 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~-------~~~--qi~~adiiviNK~Dl~~~~~~ 137 (178)
...+-+++|+|.. +...+ ...++.+++|+|.++...... . ... .-..+-++|.||+|+.+....
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~-~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v 126 (165)
T cd04140 48 ICTLQITDTTGSHQFPAMQRLS-ISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREV 126 (165)
T ss_pred EEEEEEEECCCCCcchHHHHHH-hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCee
Confidence 4667789999931 11111 124689999999987543211 0 000 023467999999999753101
Q ss_pred hHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 138 DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 138 ~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
..+......+. ...+++++||++|+|++++|++|..+.
T Consensus 127 ~~~~~~~~~~~--~~~~~~e~SA~~g~~v~~~f~~l~~~~ 164 (165)
T cd04140 127 SSNEGAACATE--WNCAFMETSAKTNHNVQELFQELLNLE 164 (165)
T ss_pred cHHHHHHHHHH--hCCcEEEeecCCCCCHHHHHHHHHhcc
Confidence 12222333332 346899999999999999999987754
No 85
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.57 E-value=2.5e-07 Score=71.63 Aligned_cols=100 Identities=14% Similarity=0.113 Sum_probs=64.4
Q ss_pred CCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CC-C---CC-CCceeEEEEecCCCCCchhHhHHHH
Q 030407 74 ADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KG-G---PG-ITQADLLVINKTDLASAIGADLAVM 142 (178)
Q Consensus 74 ~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~-~---~q-i~~adiiviNK~Dl~~~~~~~~~~~ 142 (178)
..+.|+++.|.. +...+. ..++++++|+|+++...... .+ . .. -..+-++|+||+|+.+......+..
T Consensus 55 ~~l~l~D~~G~~~~~~~~~~~~-~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~ 133 (199)
T cd04110 55 VKLQIWDTAGQERFRTITSTYY-RGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDA 133 (199)
T ss_pred EEEEEEeCCCchhHHHHHHHHh-CCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHH
Confidence 567789999932 112222 24689999999987543211 00 0 00 1245699999999976411222344
Q ss_pred HHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 143 ERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 143 ~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+..+..+ .+++++||++|.||+++|+++.+.
T Consensus 134 ~~~~~~~~--~~~~e~Sa~~~~gi~~lf~~l~~~ 165 (199)
T cd04110 134 YKFAGQMG--ISLFETSAKENINVEEMFNCITEL 165 (199)
T ss_pred HHHHHHcC--CEEEEEECCCCcCHHHHHHHHHHH
Confidence 44444443 689999999999999999987654
No 86
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.56 E-value=3.4e-07 Score=69.10 Aligned_cols=101 Identities=16% Similarity=0.107 Sum_probs=65.0
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CC-------CCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KG-------GPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~-------~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
.+.+-|++|+|.. +...+. ..+|++++|+|+++...... .+ ...-..+-++|.||+|+.++.....
T Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~ 140 (180)
T cd04127 62 RIHLQLWDTAGQERFRSLTTAFF-RDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSE 140 (180)
T ss_pred EEEEEEEeCCChHHHHHHHHHHh-CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCH
Confidence 4678899999932 111222 35799999999986532211 00 0001235699999999975411223
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+...+..++. ..+++++||++|.|++++|+.|.+.
T Consensus 141 ~~~~~~~~~~--~~~~~e~Sak~~~~v~~l~~~l~~~ 175 (180)
T cd04127 141 EQAKALADKY--GIPYFETSAATGTNVEKAVERLLDL 175 (180)
T ss_pred HHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 3445555544 3589999999999999999988653
No 87
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.56 E-value=2.8e-07 Score=70.61 Aligned_cols=100 Identities=17% Similarity=0.226 Sum_probs=61.7
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCCC------CCCceeEEEEecCCCCCchh-Hh-
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGGP------GITQADLLVINKTDLASAIG-AD- 138 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~~------qi~~adiiviNK~Dl~~~~~-~~- 138 (178)
.+++-+.+|.|.. +...+. ..+|++++|+|.++...... .+.. .-..+ ++|+||+||..... .+
T Consensus 48 ~~~l~iwDt~G~~~~~~~~~~~~-~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~ 125 (182)
T cd04128 48 EITFSIWDLGGQREFINMLPLVC-NDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQ 125 (182)
T ss_pred EEEEEEEeCCCchhHHHhhHHHC-cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhh
Confidence 4678889999942 112222 35799999999987543211 0000 01223 78999999963200 11
Q ss_pred ---HHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 139 ---LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 139 ---~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+...+..+..+ ++++++||++|+|++++|+++.+.
T Consensus 126 ~~~~~~~~~~a~~~~--~~~~e~SAk~g~~v~~lf~~l~~~ 164 (182)
T cd04128 126 EEITKQARKYAKAMK--APLIFCSTSHSINVQKIFKIVLAK 164 (182)
T ss_pred hhhHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 122233333332 689999999999999999987653
No 88
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.56 E-value=1.4e-07 Score=73.18 Aligned_cols=103 Identities=17% Similarity=0.052 Sum_probs=67.7
Q ss_pred CCCCEEEEeCCcch--hhhcccccccceEEEEEeCCCCCCCCc---CCCCC-----CCceeEEEEecCCCCCc-------
Q 030407 72 FKADLLLCESGGDN--LAANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASA------- 134 (178)
Q Consensus 72 ~~~d~iiiEttG~~--~~~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~q-----i~~adiiviNK~Dl~~~------- 134 (178)
..+.+.+++|.|.. +...+ ...+|++++|+|.++...... .+... -..+-++|.||+||.+.
T Consensus 64 ~~v~l~iwDTaG~~~~~~~~~-~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~ 142 (195)
T cd01873 64 VSVSLRLWDTFGDHDKDRRFA-YGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNR 142 (195)
T ss_pred EEEEEEEEeCCCChhhhhccc-CCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhh
Confidence 35788899999942 12222 236899999999987643211 11111 13456999999999631
Q ss_pred ------------hhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 135 ------------IGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 135 ------------~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
.....++.+++.++. ++++++|||++|+|++++|+.+.+++
T Consensus 143 ~~~~~~~~~~~~~~V~~~e~~~~a~~~--~~~~~E~SAkt~~~V~e~F~~~~~~~ 195 (195)
T cd01873 143 ARRPLARPIKNADILPPETGRAVAKEL--GIPYYETSVVTQFGVKDVFDNAIRAA 195 (195)
T ss_pred cccccccccccCCccCHHHHHHHHHHh--CCEEEEcCCCCCCCHHHHHHHHHHhC
Confidence 002234455555554 35899999999999999999887653
No 89
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.56 E-value=1.8e-07 Score=75.18 Aligned_cols=78 Identities=13% Similarity=0.004 Sum_probs=51.8
Q ss_pred ccceEEEEEeCCCCCCCCc---CCCC---CCCceeEEEEecCCCCCchhHhHH-HHHHHHHhcCCCCCEEEEecccCCCH
Q 030407 94 LADYIIYIIDVSGGDKIPR---KGGP---GITQADLLVINKTDLASAIGADLA-VMERDALRMRDGGPFIFAQVGWVIGI 166 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~---~~~~---qi~~adiiviNK~Dl~~~~~~~~~-~~~~~l~~~np~a~i~~~SA~~g~gi 166 (178)
.+|.++.|+|+.++..... ++.. .-...-++|+||+||.+. .+.. +..+..++ .+.+++.+||++|+|+
T Consensus 36 n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~--~~~~~~~~~~~~~--~g~~v~~~SAktg~gi 111 (245)
T TIGR00157 36 NIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDD--EDMEKEQLDIYRN--IGYQVLMTSSKNQDGL 111 (245)
T ss_pred cCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCC--HHHHHHHHHHHHH--CCCeEEEEecCCchhH
Confidence 4699999999986552211 1110 112345999999999865 3222 22333443 3468999999999999
Q ss_pred HHHHHHHhh
Q 030407 167 IFTLSITHY 175 (178)
Q Consensus 167 ~el~~~l~~ 175 (178)
+++++.+..
T Consensus 112 ~eLf~~l~~ 120 (245)
T TIGR00157 112 KELIEALQN 120 (245)
T ss_pred HHHHhhhcC
Confidence 999998753
No 90
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.56 E-value=2.3e-07 Score=71.82 Aligned_cols=95 Identities=21% Similarity=0.178 Sum_probs=62.6
Q ss_pred CCEEEEeCCcchh------hhccc-----ccccceEEEEEeCCCCCCCCc-----CCCCCC---CceeEEEEecCCCCCc
Q 030407 74 ADLLLCESGGDNL------AANFS-----RELADYIIYIIDVSGGDKIPR-----KGGPGI---TQADLLVINKTDLASA 134 (178)
Q Consensus 74 ~d~iiiEttG~~~------~~~~~-----~~~ad~~I~VvD~~~~~~~~~-----~~~~qi---~~adiiviNK~Dl~~~ 134 (178)
..+.|++|.|..- ...+. ...+|.+++|+|++++..... ....++ ..+.++|+||+|+.++
T Consensus 89 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 89 REVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDD 168 (204)
T ss_pred ceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCCh
Confidence 4799999999410 01110 124689999999987543221 010112 2356999999999876
Q ss_pred hhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 135 IGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 135 ~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
.... ...+ ....+++++||++|.|+++++++|.+
T Consensus 169 --~~~~---~~~~--~~~~~~~~~Sa~~~~gi~~l~~~L~~ 202 (204)
T cd01878 169 --EELE---ERLE--AGRPDAVFISAKTGEGLDELLEAIEE 202 (204)
T ss_pred --HHHH---HHhh--cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 3332 2233 34568999999999999999999865
No 91
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.55 E-value=3.3e-07 Score=71.82 Aligned_cols=101 Identities=16% Similarity=0.062 Sum_probs=64.1
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc--C-------CC-C-CCCceeEEEEecCCCCCchhH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR--K-------GG-P-GITQADLLVINKTDLASAIGA 137 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~--~-------~~-~-qi~~adiiviNK~Dl~~~~~~ 137 (178)
.+.+.|++|.|... ...+. ..+|++++|+|+++...... . .. . .-..+-++|.||+|+......
T Consensus 49 ~~~~~i~Dt~G~~~~~~l~~~~~-~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v 127 (215)
T cd04109 49 NVTLQVWDIGGQSIGGKMLDKYI-YGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV 127 (215)
T ss_pred EEEEEEEECCCcHHHHHHHHHHh-hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccccc
Confidence 46788999999421 12232 35799999999987532211 0 00 0 011245789999999743112
Q ss_pred hHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 138 DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 138 ~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
..+...+..+.. ..+++++||++|+|++++|+++.+.
T Consensus 128 ~~~~~~~~~~~~--~~~~~~iSAktg~gv~~lf~~l~~~ 164 (215)
T cd04109 128 KDDKHARFAQAN--GMESCLVSAKTGDRVNLLFQQLAAE 164 (215)
T ss_pred CHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 233444444433 3589999999999999999987653
No 92
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.55 E-value=3.9e-07 Score=67.87 Aligned_cols=100 Identities=20% Similarity=0.234 Sum_probs=64.0
Q ss_pred CCEEEEeCCcch--------hhhccc--ccccceEEEEEeCCCC-CCCCc---------CCCCC-CCceeEEEEecCCCC
Q 030407 74 ADLLLCESGGDN--------LAANFS--RELADYIIYIIDVSGG-DKIPR---------KGGPG-ITQADLLVINKTDLA 132 (178)
Q Consensus 74 ~d~iiiEttG~~--------~~~~~~--~~~ad~~I~VvD~~~~-~~~~~---------~~~~q-i~~adiiviNK~Dl~ 132 (178)
..+.|++|.|.. +...+. ...+|.+++|+|+++. ..... ..... ...+-++|+||+|+.
T Consensus 48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 127 (170)
T cd01898 48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL 127 (170)
T ss_pred CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC
Confidence 378899999941 011111 1236899999999876 22110 01111 245679999999998
Q ss_pred CchhHhHHH-HHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 133 SAIGADLAV-MERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 133 ~~~~~~~~~-~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+. ..... .....+.. ...+++++||++|.|++++++++.+.
T Consensus 128 ~~--~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 128 DE--EELFELLKELLKEL-WGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred Cc--hhhHHHHHHHHhhC-CCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 76 33332 33333332 24589999999999999999998754
No 93
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.55 E-value=3.8e-07 Score=70.11 Aligned_cols=82 Identities=13% Similarity=0.023 Sum_probs=53.1
Q ss_pred ccceEEEEEeCCCCCCCCc-CC-CCCCCceeEEEEecCCCCCchhHhHHHHHHHH-----HhcC-CCCCEEEEecccCCC
Q 030407 94 LADYIIYIIDVSGGDKIPR-KG-GPGITQADLLVINKTDLASAIGADLAVMERDA-----LRMR-DGGPFIFAQVGWVIG 165 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~-~~-~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l-----~~~n-p~a~i~~~SA~~g~g 165 (178)
.+|.+++|+|+++...... .. ......+-++|+||+|+.++. ...+.+..+. +..+ +..+++++||++|+|
T Consensus 34 ~ad~il~VvD~~~~~~~~~~~l~~~~~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~g 112 (190)
T cd01855 34 KKALVVHVVDIFDFPGSLIPRLRLFGGNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWG 112 (190)
T ss_pred CCcEEEEEEECccCCCccchhHHHhcCCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCC
Confidence 4789999999987542211 11 111234679999999997541 2222233332 2222 234799999999999
Q ss_pred HHHHHHHHhhh
Q 030407 166 IIFTLSITHYI 176 (178)
Q Consensus 166 i~el~~~l~~~ 176 (178)
+++|++.+.+.
T Consensus 113 i~eL~~~l~~~ 123 (190)
T cd01855 113 VEELINAIKKL 123 (190)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 94
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.55 E-value=2.7e-07 Score=68.29 Aligned_cols=101 Identities=14% Similarity=0.052 Sum_probs=66.1
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CC------CCCCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KG------GPGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~------~~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
.+.+-++++.|.. +...+. ..+|++++|+|+++...... .+ ...-..+-++++||+|+.+......+
T Consensus 48 ~~~l~l~D~~G~~~~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~ 126 (161)
T cd04113 48 RVKLQIWDTAGQERFRSVTRSYY-RGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFL 126 (161)
T ss_pred EEEEEEEECcchHHHHHhHHHHh-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHH
Confidence 3677899999942 112222 24699999999987543211 00 00123467999999999754212234
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
......+..+ .+++++||++|+|++++|+.+.+.
T Consensus 127 ~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 127 EASRFAQENG--LLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred HHHHHHHHcC--CEEEEEECCCCCCHHHHHHHHHHh
Confidence 4455555443 689999999999999999988653
No 95
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.55 E-value=1.6e-07 Score=70.00 Aligned_cols=98 Identities=14% Similarity=0.084 Sum_probs=63.1
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCCC---C--CCceeEEEEecCCCCCchhHhHHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGGP---G--ITQADLLVINKTDLASAIGADLAV 141 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~~---q--i~~adiiviNK~Dl~~~~~~~~~~ 141 (178)
.+.+-+++|+|.. +...+. ..+|.+++|+|+++...... .+.. + -..+-++|+||+|+.+. . .+.
T Consensus 48 ~~~~~i~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~--~-~~~ 123 (161)
T cd04124 48 TILVDFWDTAGQERFQTMHASYY-HKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS--V-TQK 123 (161)
T ss_pred EEEEEEEeCCCchhhhhhhHHHh-CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh--H-HHH
Confidence 4677899999932 112222 25799999999977543211 0100 0 13467999999999543 2 222
Q ss_pred HHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 142 MERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 142 ~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
..+..+.. ..+++++||++|.|++++++.+.+.
T Consensus 124 ~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 124 KFNFAEKH--NLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred HHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 23333322 3589999999999999999987654
No 96
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.54 E-value=4.3e-07 Score=67.80 Aligned_cols=102 Identities=16% Similarity=0.127 Sum_probs=63.9
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCCC---C---CCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGGP---G---ITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~~---q---i~~adiiviNK~Dl~~~~~~~~~ 140 (178)
...+.+++|.|.. +...+ ...+|++++|+|.++...... .+.. + -..+-++|+||+|+.+......+
T Consensus 49 ~~~~~l~Dt~g~~~~~~~~~~~-~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~ 127 (165)
T cd01865 49 RVKLQIWDTAGQERYRTITTAY-YRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSE 127 (165)
T ss_pred EEEEEEEECCChHHHHHHHHHH-ccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHH
Confidence 3678899999931 11112 235799999999976432211 0000 0 12346999999999754111223
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
...+..+.. ..+++++||++|.|++++++.+.+.+
T Consensus 128 ~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 128 RGRQLADQL--GFEFFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred HHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 333334433 24799999999999999999987643
No 97
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.53 E-value=1.8e-07 Score=69.47 Aligned_cols=100 Identities=15% Similarity=0.034 Sum_probs=62.3
Q ss_pred CCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--C-------CCCCCCceeEEEEecCCCCCchhHhHH
Q 030407 74 ADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--K-------GGPGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 74 ~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~-------~~~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
..+-|++|+|.. +...+. ..+|.+++|+|.++...... . ....-..+.++|+||+|+.+......+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~-~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~ 127 (163)
T cd04176 49 SVLEILDTAGTEQFASMRDLYI-KNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSA 127 (163)
T ss_pred EEEEEEECCCcccccchHHHHH-hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHH
Confidence 445678999931 112222 24799999999987542211 0 111124567999999999654111222
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
......+.. ..+++++||++|.|++++|+++.+.
T Consensus 128 ~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 128 EGRALAEEW--GCPFMETSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred HHHHHHHHh--CCEEEEecCCCCCCHHHHHHHHHHh
Confidence 233333332 3589999999999999999988654
No 98
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.53 E-value=4.2e-07 Score=67.71 Aligned_cols=101 Identities=12% Similarity=0.023 Sum_probs=64.5
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc--CC------CCCCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR--KG------GPGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~--~~------~~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
.+.+.+++|.|... ...+. ..+|.+++++|+++...... .+ ......+-++|+||+|+........+
T Consensus 51 ~~~l~i~D~~G~~~~~~~~~~~~-~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 129 (165)
T cd01864 51 RVKLQIWDTAGQERFRTITQSYY-RSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFE 129 (165)
T ss_pred EEEEEEEECCChHHHHHHHHHHh-ccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHH
Confidence 36789999999321 11222 24699999999987542211 01 00123456999999999754212233
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
...+..+. ....+++++||++|+|++++++.+.+
T Consensus 130 ~~~~~~~~-~~~~~~~e~Sa~~~~~v~~~~~~l~~ 163 (165)
T cd01864 130 EACTLAEK-NGMLAVLETSAKESQNVEEAFLLMAT 163 (165)
T ss_pred HHHHHHHH-cCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 44444443 33347899999999999999998865
No 99
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.52 E-value=2.3e-07 Score=73.28 Aligned_cols=103 Identities=16% Similarity=0.120 Sum_probs=65.7
Q ss_pred CCCEEEEeCCcch-hhhccccc-ccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhHHH
Q 030407 73 KADLLLCESGGDN-LAANFSRE-LADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLAV 141 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~~~~~~~-~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~~~ 141 (178)
...+.+++|.|.. ........ .+|++++|+|+++...... ........+-++|.||+|+.+......+.
T Consensus 49 ~~~l~i~Dt~G~~~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~ 128 (221)
T cd04148 49 ESTLVVIDHWEQEMWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQE 128 (221)
T ss_pred EEEEEEEeCCCcchHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHH
Confidence 4678899999943 11122222 5799999999987532210 01111245679999999997651111222
Q ss_pred HHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 142 MERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 142 ~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
..+..... ..+++++||++|.|++++|+++.+.+
T Consensus 129 ~~~~a~~~--~~~~~e~SA~~~~gv~~l~~~l~~~~ 162 (221)
T cd04148 129 GRACAVVF--DCKFIETSAGLQHNVDELLEGIVRQI 162 (221)
T ss_pred HHHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 23333322 36899999999999999999887653
No 100
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.52 E-value=1.5e-07 Score=69.61 Aligned_cols=100 Identities=15% Similarity=0.093 Sum_probs=65.4
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCCC-----CCCceeEEEEecCCCCCchhHhHHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGGP-----GITQADLLVINKTDLASAIGADLAV 141 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~~-----qi~~adiiviNK~Dl~~~~~~~~~~ 141 (178)
..++.+++|.|.. +...+. ..+|.+++|+|+++...... .+.. .-..+-++|+||+|+.++.....++
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~-~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~ 128 (162)
T cd04106 50 DVRLMLWDTAGQEEFDAITKAYY-RGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEE 128 (162)
T ss_pred EEEEEEeeCCchHHHHHhHHHHh-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHH
Confidence 5788999999931 112222 35799999999976542211 0100 1134679999999997641122344
Q ss_pred HHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 142 MERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 142 ~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
..+..+.. ..+++++||++|.|+++++++|..
T Consensus 129 ~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 129 AEALAKRL--QLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred HHHHHHHc--CCeEEEEECCCCCCHHHHHHHHHH
Confidence 44444443 348999999999999999999865
No 101
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.52 E-value=4.9e-07 Score=67.34 Aligned_cols=101 Identities=19% Similarity=0.183 Sum_probs=64.3
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCC----C--CCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGG----P--GITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~----~--qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
...+-++++.|.. +...+. ..+|++++|+|+++...... .+. . .-..+-+++.||+|+..+.....+
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~-~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~ 128 (166)
T cd01869 50 TIKLQIWDTAGQERFRTITSSYY-RGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYS 128 (166)
T ss_pred EEEEEEEECCCcHhHHHHHHHHh-CcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHH
Confidence 3567788999932 111222 24799999999987542211 000 0 012467999999999654212223
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+..+.. ..+++++||++|+|++++|+.+.+.
T Consensus 129 ~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~i~~~ 162 (166)
T cd01869 129 EAQEFADEL--GIPFLETSAKNATNVEQAFMTMARE 162 (166)
T ss_pred HHHHHHHHc--CCeEEEEECCCCcCHHHHHHHHHHH
Confidence 444444433 4689999999999999999988653
No 102
>PRK09866 hypothetical protein; Provisional
Probab=98.51 E-value=4.5e-07 Score=81.15 Aligned_cols=103 Identities=13% Similarity=0.022 Sum_probs=66.6
Q ss_pred CCCEEEEeCCcchhh--hcc------cccccceEEEEEeCCCCCCCCc-CC---CCCCC--ceeEEEEecCCCCCchhHh
Q 030407 73 KADLLLCESGGDNLA--ANF------SRELADYIIYIIDVSGGDKIPR-KG---GPGIT--QADLLVINKTDLASAIGAD 138 (178)
Q Consensus 73 ~~d~iiiEttG~~~~--~~~------~~~~ad~~I~VvD~~~~~~~~~-~~---~~qi~--~adiiviNK~Dl~~~~~~~ 138 (178)
...+|||.|.|..-. ..+ ....+|.+++|+|+..+....+ .. ..+.. .+.++|+||+|+.+.....
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccch
Confidence 468899999995211 001 1124799999999977532211 11 11122 3678999999997631112
Q ss_pred HHHHHHHHH-----hcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 139 LAVMERDAL-----RMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 139 ~~~~~~~l~-----~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
.+.+.+.++ ...+..+||++||++|.|++++++.|.+
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 344444443 2235779999999999999999998865
No 103
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.51 E-value=5.6e-07 Score=69.94 Aligned_cols=102 Identities=13% Similarity=-0.018 Sum_probs=62.8
Q ss_pred CCCEEEEeCCcchh----h--h----c-ccccccceEEEEEeCCCCCCCCc--CC-------C--CCCCceeEEEEecCC
Q 030407 73 KADLLLCESGGDNL----A--A----N-FSRELADYIIYIIDVSGGDKIPR--KG-------G--PGITQADLLVINKTD 130 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~--~----~-~~~~~ad~~I~VvD~~~~~~~~~--~~-------~--~qi~~adiiviNK~D 130 (178)
.+.+.|++|.|..- . . . .....+|.+++|+|+++...... .+ . .--..+-++|.||+|
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~D 127 (198)
T cd04142 48 VYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRD 127 (198)
T ss_pred EEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcc
Confidence 36778999988310 0 0 0 01124799999999987643211 00 0 011246799999999
Q ss_pred CCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 131 LASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 131 l~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
+........+...+..++. -..+++++||++|.|++++|+.+.+
T Consensus 128 l~~~~~~~~~~~~~~~~~~-~~~~~~e~Sak~g~~v~~lf~~i~~ 171 (198)
T cd04142 128 QQRHRFAPRHVLSVLVRKS-WKCGYLECSAKYNWHILLLFKELLI 171 (198)
T ss_pred ccccccccHHHHHHHHHHh-cCCcEEEecCCCCCCHHHHHHHHHH
Confidence 9653111222333333322 2468999999999999999997764
No 104
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.51 E-value=3.8e-07 Score=69.73 Aligned_cols=101 Identities=15% Similarity=0.130 Sum_probs=62.1
Q ss_pred CCCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---C----CCC-C-CCceeEEEEecCCCCCchhHh
Q 030407 72 FKADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---K----GGP-G-ITQADLLVINKTDLASAIGAD 138 (178)
Q Consensus 72 ~~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---~----~~~-q-i~~adiiviNK~Dl~~~~~~~ 138 (178)
.+..+.+++|.|.. +...+. ..+|++|+|+|+++...... . ... . -..+-++|+||.|+... ..
T Consensus 59 ~~~~~~l~D~~G~~~~~~~~~~~~-~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~ 135 (182)
T PTZ00133 59 KNLKFTMWDVGGQDKLRPLWRHYY-QNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--MS 135 (182)
T ss_pred CCEEEEEEECCCCHhHHHHHHHHh-cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CC
Confidence 35778999999942 111222 35799999999976432110 0 001 0 12356899999999754 23
Q ss_pred HHHHHHHHHhc--C-CCCCEEEEecccCCCHHHHHHHHhh
Q 030407 139 LAVMERDALRM--R-DGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 139 ~~~~~~~l~~~--n-p~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
.+.+.+.+... . ...+++++||++|+|+++++++|.+
T Consensus 136 ~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~ 175 (182)
T PTZ00133 136 TTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSA 175 (182)
T ss_pred HHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHH
Confidence 33343333211 0 0124678999999999999999875
No 105
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.50 E-value=1.4e-07 Score=70.57 Aligned_cols=100 Identities=17% Similarity=0.131 Sum_probs=69.5
Q ss_pred CCCEEEEeCCcch---hhhcccccccceEEEEEeCCCCCCCCcC------CCCC--CCceeEEEEecCCCCCchhHhHHH
Q 030407 73 KADLLLCESGGDN---LAANFSRELADYIIYIIDVSGGDKIPRK------GGPG--ITQADLLVINKTDLASAIGADLAV 141 (178)
Q Consensus 73 ~~d~iiiEttG~~---~~~~~~~~~ad~~I~VvD~~~~~~~~~~------~~~q--i~~adiiviNK~Dl~~~~~~~~~~ 141 (178)
..|.=|..|.|-- -..|.++...++.++|+|.++.+..+.- ...+ -+.+-+||.||+||-.+.....+.
T Consensus 61 ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qe 140 (218)
T KOG0088|consen 61 RADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQE 140 (218)
T ss_pred eeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHH
Confidence 5789999999931 0133333468999999999987654321 1111 256779999999996542233444
Q ss_pred HHHHHHhcCCCCCEEEEecccCCCHHHHHHHHh
Q 030407 142 MERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 174 (178)
Q Consensus 142 ~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~ 174 (178)
.+++.+.. +|.++.|||+.++||.|+|+.|-
T Consensus 141 Ae~YAesv--GA~y~eTSAk~N~Gi~elFe~Lt 171 (218)
T KOG0088|consen 141 AEAYAESV--GALYMETSAKDNVGISELFESLT 171 (218)
T ss_pred HHHHHHhh--chhheecccccccCHHHHHHHHH
Confidence 55555543 68999999999999999998653
No 106
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=4.4e-07 Score=79.07 Aligned_cols=101 Identities=15% Similarity=0.115 Sum_probs=70.0
Q ss_pred CCCEEEEeCCcchhhhcccc----cccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCchhHhHHHHHH
Q 030407 73 KADLLLCESGGDNLAANFSR----ELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMER 144 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~~~~~----~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~ 144 (178)
.+-+.||.|.| .-+-+..+ ..+|.+|+|||+.++...+.. +......+-+|.+||+|+.+. ...++..
T Consensus 54 ~~~itFiDTPG-HeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~---np~~v~~ 129 (509)
T COG0532 54 IPGITFIDTPG-HEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEA---NPDKVKQ 129 (509)
T ss_pred CceEEEEcCCc-HHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCC---CHHHHHH
Confidence 47899999999 22211111 246999999999988655431 222345567999999999855 4445555
Q ss_pred HHHhc--CC-----CCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 145 DALRM--RD-----GGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 145 ~l~~~--np-----~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
.+.+. +| ...++++||++|+|+++|++.+.-++
T Consensus 130 el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 130 ELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred HHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHH
Confidence 54432 22 36899999999999999999876543
No 107
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.50 E-value=5.8e-07 Score=66.05 Aligned_cols=101 Identities=21% Similarity=0.161 Sum_probs=65.3
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CC------CCCCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KG------GPGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~------~~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
...+.++++.|.. +...+. ..+|.+++|+|.++...... .+ ...-..+-++++||+|+.++.....+
T Consensus 48 ~~~~~~~D~~g~~~~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~ 126 (162)
T cd04123 48 RIDLAIWDTAGQERYHALGPIYY-RDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKS 126 (162)
T ss_pred EEEEEEEECCchHHHHHhhHHHh-ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHH
Confidence 3568899999931 112222 24799999999987643211 00 00114578999999999754212234
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+.+..+.. ..+++++||++|+|++++++++.+.
T Consensus 127 ~~~~~~~~~--~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 127 EAEEYAKSV--GAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred HHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 444444444 3579999999999999999998654
No 108
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.50 E-value=7.1e-07 Score=71.83 Aligned_cols=103 Identities=8% Similarity=0.023 Sum_probs=66.7
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--C-------C--------CCCCCceeEEEEecCCC
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--K-------G--------GPGITQADLLVINKTDL 131 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~-------~--------~~qi~~adiiviNK~Dl 131 (178)
.+.+-|++|+|.. +...+ ...+|.+|+|+|.++...... . . ......+-++|+||+|+
T Consensus 47 ~~~l~I~Dt~G~~~~~~~~~~~-~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl 125 (247)
T cd04143 47 VYQLDILDTSGNHPFPAMRRLS-ILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADR 125 (247)
T ss_pred EEEEEEEECCCChhhhHHHHHH-hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccc
Confidence 3667789999931 11111 224699999999987532110 0 0 01124567999999999
Q ss_pred CCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 132 ASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
..+.....+++.+.+... ...+++++||++|.|++++|++|.+.+
T Consensus 126 ~~~~~v~~~ei~~~~~~~-~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 126 DFPREVQRDEVEQLVGGD-ENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred hhccccCHHHHHHHHHhc-CCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 752113444555555432 245799999999999999999987654
No 109
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.49 E-value=1.4e-07 Score=73.60 Aligned_cols=99 Identities=9% Similarity=-0.038 Sum_probs=63.9
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCCC----C-CCceeEEEEecCCCCCchhHhHHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGGP----G-ITQADLLVINKTDLASAIGADLAV 141 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~~----q-i~~adiiviNK~Dl~~~~~~~~~~ 141 (178)
.+.+-|++|+|.. +...+. ..++++|+|+|.+....... .+.. . -..+-++|.||+|+.... ...+.
T Consensus 43 ~~~l~iwDt~G~e~~~~l~~~~~-~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~-v~~~~ 120 (200)
T smart00176 43 PIRFNVWDTAGQEKFGGLRDGYY-IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRK-VKAKS 120 (200)
T ss_pred EEEEEEEECCCchhhhhhhHHHh-cCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc-CCHHH
Confidence 5778899999941 222333 35799999999987643211 0100 0 134679999999986431 11122
Q ss_pred HHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 142 MERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 142 ~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+..+. ...++++|||++|+||+++|++|.+.
T Consensus 121 -~~~~~~--~~~~~~e~SAk~~~~v~~~F~~l~~~ 152 (200)
T smart00176 121 -ITFHRK--KNLQYYDISAKSNYNFEKPFLWLARK 152 (200)
T ss_pred -HHHHHH--cCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 223232 24689999999999999999998753
No 110
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=7.8e-07 Score=68.63 Aligned_cols=101 Identities=19% Similarity=0.163 Sum_probs=68.1
Q ss_pred CCCCEEEEeCCcc----hhhhcccccccceEEEEEeCCCCCCCCc--CC-------CCCCCceeEEEEecCCCCCchhHh
Q 030407 72 FKADLLLCESGGD----NLAANFSRELADYIIYIIDVSGGDKIPR--KG-------GPGITQADLLVINKTDLASAIGAD 138 (178)
Q Consensus 72 ~~~d~iiiEttG~----~~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~-------~~qi~~adiiviNK~Dl~~~~~~~ 138 (178)
..+-.=+..|.|- ++++.|.+ .+..+|+|+|.++...... ++ ...=..--++|.||.||+++..-.
T Consensus 69 ~~vrLQlWDTAGQERFrslipsY~R-ds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs 147 (221)
T KOG0094|consen 69 RTVRLQLWDTAGQERFRSLIPSYIR-DSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVS 147 (221)
T ss_pred cEEEEEEEecccHHHHhhhhhhhcc-CCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhh
Confidence 3567778899994 45566665 6788999999987543321 11 110011237889999999883222
Q ss_pred HHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 139 LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 139 ~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
.++-....+++ ++.++.|||++|++|.++|..|..
T Consensus 148 ~eEg~~kAkel--~a~f~etsak~g~NVk~lFrrIaa 182 (221)
T KOG0094|consen 148 IEEGERKAKEL--NAEFIETSAKAGENVKQLFRRIAA 182 (221)
T ss_pred HHHHHHHHHHh--CcEEEEecccCCCCHHHHHHHHHH
Confidence 33344445555 459999999999999999998764
No 111
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.48 E-value=5.2e-07 Score=78.68 Aligned_cols=99 Identities=15% Similarity=0.156 Sum_probs=63.9
Q ss_pred CEEEEeCCcch-h-hhccc-ccccceEEEEEeCCCC-CCCCc-CC---CCCCCc-eeEEEEecCCCCCchhHhHHHHHHH
Q 030407 75 DLLLCESGGDN-L-AANFS-RELADYIIYIIDVSGG-DKIPR-KG---GPGITQ-ADLLVINKTDLASAIGADLAVMERD 145 (178)
Q Consensus 75 d~iiiEttG~~-~-~~~~~-~~~ad~~I~VvD~~~~-~~~~~-~~---~~qi~~-adiiviNK~Dl~~~~~~~~~~~~~~ 145 (178)
.+.||++.|-. . ..+.. ...+|.+++|+|+..+ ...+. .+ ...+.. .-++++||+|+++. ++.+...+.
T Consensus 118 ~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~--~~~~~~~~e 195 (460)
T PTZ00327 118 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKE--AQAQDQYEE 195 (460)
T ss_pred eEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCH--HHHHHHHHH
Confidence 57899999921 1 11111 1246999999999874 22211 11 111222 24789999999876 454444444
Q ss_pred HHhc-----CCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 146 ALRM-----RDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 146 l~~~-----np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
+++. ...++++++||++|+|+++|++.|..
T Consensus 196 i~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~ 230 (460)
T PTZ00327 196 IRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICT 230 (460)
T ss_pred HHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHh
Confidence 4332 24679999999999999999999874
No 112
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.48 E-value=7.2e-07 Score=66.71 Aligned_cols=101 Identities=17% Similarity=0.087 Sum_probs=65.0
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCC----C--CCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGG----P--GITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~----~--qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
.+.+.++++.|.. +...+ ...+|++++++|+++...... .+. . .-..+-++|.||+|+.+......+
T Consensus 51 ~~~l~l~D~~g~~~~~~~~~~~-~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~ 129 (167)
T cd01867 51 KIKLQIWDTAGQERFRTITTAY-YRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKE 129 (167)
T ss_pred EEEEEEEeCCchHHHHHHHHHH-hCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHH
Confidence 3567889999932 11111 235799999999976543211 000 0 013456999999999754112334
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+..+.. ..+++++||++|.|++++|+.+.+.
T Consensus 130 ~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~i~~~ 163 (167)
T cd01867 130 EGEALADEY--GIKFLETSAKANINVEEAFFTLAKD 163 (167)
T ss_pred HHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 445555543 3489999999999999999988754
No 113
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.48 E-value=2.5e-07 Score=69.77 Aligned_cols=102 Identities=16% Similarity=-0.040 Sum_probs=62.0
Q ss_pred CCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc------CCCCCCCceeEEEEecCCCCCchhHhHHHHH
Q 030407 74 ADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKTDLASAIGADLAVME 143 (178)
Q Consensus 74 ~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~------~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~ 143 (178)
..+.+.++.|.. +...+ ...+|++++|+|+++...... .....-..+-++|+||+|+.+..........
T Consensus 54 ~~l~~~d~~g~~~~~~~~~~~-~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~ 132 (169)
T cd01892 54 KYLILREVGEDEVAILLNDAE-LAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPD 132 (169)
T ss_pred EEEEEEecCCcccccccchhh-hhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHH
Confidence 566777888831 11122 235799999999977533211 1111124578999999999654101111222
Q ss_pred HHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 144 RDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 144 ~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
+..+..+ ..+++++||++|+|++++|+.+.+.+
T Consensus 133 ~~~~~~~-~~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 133 EFCRKLG-LPPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred HHHHHcC-CCCCEEEEeccCccHHHHHHHHHHHh
Confidence 2333332 23568999999999999999887653
No 114
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.47 E-value=4e-07 Score=76.89 Aligned_cols=96 Identities=23% Similarity=0.226 Sum_probs=62.5
Q ss_pred CCCEEEEeCCcc-h-----hhhccc-----ccccceEEEEEeCCCCCCCCc-----CCCCCC---CceeEEEEecCCCCC
Q 030407 73 KADLLLCESGGD-N-----LAANFS-----RELADYIIYIIDVSGGDKIPR-----KGGPGI---TQADLLVINKTDLAS 133 (178)
Q Consensus 73 ~~d~iiiEttG~-~-----~~~~~~-----~~~ad~~I~VvD~~~~~~~~~-----~~~~qi---~~adiiviNK~Dl~~ 133 (178)
+..+.|++|+|. . +...|. ...+|.+++|+|++++..... .....+ ..+-++|+||+|+.+
T Consensus 236 ~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 236 GGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD 315 (351)
T ss_pred CceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence 467899999994 1 011121 124799999999987643211 010111 345699999999976
Q ss_pred chhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 134 AIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 134 ~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
. ..... ... ...+++++||++|+|+++|++.|.+.
T Consensus 316 ~--~~v~~----~~~--~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 316 E--PRIER----LEE--GYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred h--HhHHH----HHh--CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 5 33322 111 12468999999999999999998764
No 115
>PTZ00369 Ras-like protein; Provisional
Probab=98.47 E-value=6e-07 Score=68.82 Aligned_cols=100 Identities=13% Similarity=0.084 Sum_probs=62.2
Q ss_pred CCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--C-------CCCCCCceeEEEEecCCCCCchhHhHH
Q 030407 74 ADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--K-------GGPGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 74 ~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~-------~~~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
..+-+++|.|.. +...+. ..++++++|+|+++...... . ....-..+-++|+||+|+.+......+
T Consensus 53 ~~l~i~Dt~G~~~~~~l~~~~~-~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~ 131 (189)
T PTZ00369 53 CLLDILDTAGQEEYSAMRDQYM-RTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTG 131 (189)
T ss_pred EEEEEEeCCCCccchhhHHHHh-hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHH
Confidence 445578999932 112222 25799999999987542110 0 011113456999999998654111222
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+..+.. ..+++++||++|.|++++|+++.+.
T Consensus 132 ~~~~~~~~~--~~~~~e~Sak~~~gi~~~~~~l~~~ 165 (189)
T PTZ00369 132 EGQELAKSF--GIPFLETSAKQRVNVDEAFYELVRE 165 (189)
T ss_pred HHHHHHHHh--CCEEEEeeCCCCCCHHHHHHHHHHH
Confidence 333344433 3589999999999999999988653
No 116
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.47 E-value=5.4e-07 Score=67.47 Aligned_cols=102 Identities=18% Similarity=0.092 Sum_probs=64.0
Q ss_pred CCCEEEEeCCcchh-hhc--ccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDNL-AAN--FSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~~-~~~--~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
+.++.++++.|..- ... .....+|.+++|+|+++...... +.......+.++++||+|+.+. ...+
T Consensus 57 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~ 134 (173)
T cd04155 57 GFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA--APAE 134 (173)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC--CCHH
Confidence 56788999999421 111 11124688999999976321110 0111123567899999999776 4444
Q ss_pred HHHHHHHhc---CCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRM---RDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~---np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+.+.++-. +...+++++||++|+|+++++++|.++
T Consensus 135 ~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 173 (173)
T cd04155 135 EIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCKN 173 (173)
T ss_pred HHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhcC
Confidence 554444311 111257899999999999999998753
No 117
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.47 E-value=8e-07 Score=65.73 Aligned_cols=101 Identities=15% Similarity=0.045 Sum_probs=65.5
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CC------CCCCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KG------GPGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~------~~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
...+.++++.|.. ....+. ..+|++++|+|+++...... .+ ...-..+-++++||+|+.+......+
T Consensus 49 ~~~~~i~D~~G~~~~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~ 127 (163)
T cd01860 49 TVKFEIWDTAGQERYRSLAPMYY-RGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTE 127 (163)
T ss_pred EEEEEEEeCCchHHHHHHHHHHh-ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHH
Confidence 4567789999931 111122 24699999999986542211 00 00123456889999999743212344
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+..+..+ .+++++||++|.|++++++.|.+.
T Consensus 128 ~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd01860 128 EAQEYADENG--LLFFETSAKTGENVNELFTEIAKK 161 (163)
T ss_pred HHHHHHHHcC--CEEEEEECCCCCCHHHHHHHHHHH
Confidence 5555555543 689999999999999999998764
No 118
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.47 E-value=5.4e-07 Score=80.75 Aligned_cols=102 Identities=12% Similarity=0.047 Sum_probs=66.2
Q ss_pred CCEEEEeCCcch-hhh-cc-cccccceEEEEEeCCCCCCCCcC----CCCCCCce-eEEEEecCCCCCchhHhHHH----
Q 030407 74 ADLLLCESGGDN-LAA-NF-SRELADYIIYIIDVSGGDKIPRK----GGPGITQA-DLLVINKTDLASAIGADLAV---- 141 (178)
Q Consensus 74 ~d~iiiEttG~~-~~~-~~-~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~a-diiviNK~Dl~~~~~~~~~~---- 141 (178)
..+-|+++.|-. ... +. ....+|.+++|+|+.++...+.. .......+ -++++||+|++++ +..+.
T Consensus 50 ~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~--~~~~~~~~e 127 (581)
T TIGR00475 50 YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNE--EEIKRTEMF 127 (581)
T ss_pred EEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCH--HHHHHHHHH
Confidence 567899999931 111 11 11246999999999876432210 11113334 6999999999876 44433
Q ss_pred HHHHHHhc--CCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 142 MERDALRM--RDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 142 ~~~~l~~~--np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
+.+.++.. .+..+++++||++|+|++++++.+..+.
T Consensus 128 i~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~ 165 (581)
T TIGR00475 128 MKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLL 165 (581)
T ss_pred HHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHH
Confidence 33334332 1357999999999999999999886643
No 119
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.47 E-value=7.4e-07 Score=68.43 Aligned_cols=101 Identities=15% Similarity=0.167 Sum_probs=63.5
Q ss_pred CCCEEEEeCCcch-h---hhcccccccceEEEEEeCCCCCCCCc--CC----C--CCCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDN-L---AANFSRELADYIIYIIDVSGGDKIPR--KG----G--PGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~-~---~~~~~~~~ad~~I~VvD~~~~~~~~~--~~----~--~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
...+-|++|.|.. . ...+. ..+|++++|+|++....... .+ . ..-..+-++|+||+|+..+.....+
T Consensus 49 ~~~~~i~Dt~G~~~~~~~~~~~~-~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~ 127 (191)
T cd04112 49 KVKLQIWDTAGQERFRSVTHAYY-RDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKRE 127 (191)
T ss_pred EEEEEEEeCCCcHHHHHhhHHHc-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHH
Confidence 3567789999931 1 11122 24799999999987532210 00 0 0113467899999999643111223
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
......+.. ..+++++||++|+|++++|+++.+.
T Consensus 128 ~~~~l~~~~--~~~~~e~Sa~~~~~v~~l~~~l~~~ 161 (191)
T cd04112 128 DGERLAKEY--GVPFMETSAKTGLNVELAFTAVAKE 161 (191)
T ss_pred HHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 333333333 3589999999999999999998764
No 120
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.47 E-value=8.9e-07 Score=67.07 Aligned_cols=78 Identities=18% Similarity=0.126 Sum_probs=52.9
Q ss_pred ccceEEEEEeCCCCCCCCcC-CCCCC-CceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHH
Q 030407 94 LADYIIYIIDVSGGDKIPRK-GGPGI-TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS 171 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~~-~~~qi-~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~ 171 (178)
.+|.+++|+|+..+...... ....+ ....++|+||+|+.++ +......+.++.. ..+++.+||++|+|++++.+
T Consensus 19 ~aD~il~v~D~~~~~~~~~~~i~~~~~~k~~ilVlNK~Dl~~~--~~~~~~~~~~~~~--~~~vi~iSa~~~~gi~~L~~ 94 (171)
T cd01856 19 LVDLVIEVRDARIPLSSRNPLLEKILGNKPRIIVLNKADLADP--KKTKKWLKYFESK--GEKVLFVNAKSGKGVKKLLK 94 (171)
T ss_pred hCCEEEEEeeccCccCcCChhhHhHhcCCCEEEEEehhhcCCh--HHHHHHHHHHHhc--CCeEEEEECCCcccHHHHHH
Confidence 46999999999765432211 11111 3467999999999765 4443333333432 34789999999999999999
Q ss_pred HHhh
Q 030407 172 ITHY 175 (178)
Q Consensus 172 ~l~~ 175 (178)
.+..
T Consensus 95 ~l~~ 98 (171)
T cd01856 95 AAKK 98 (171)
T ss_pred HHHH
Confidence 8765
No 121
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.47 E-value=1.3e-06 Score=65.26 Aligned_cols=102 Identities=20% Similarity=0.150 Sum_probs=66.0
Q ss_pred CCCEEEEeCCcchhhh--------cc--cccccceEEEEEeCCCCC-----CCCc----------CCCC------CCCce
Q 030407 73 KADLLLCESGGDNLAA--------NF--SRELADYIIYIIDVSGGD-----KIPR----------KGGP------GITQA 121 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~--------~~--~~~~ad~~I~VvD~~~~~-----~~~~----------~~~~------qi~~a 121 (178)
+..+.|++|.|..-.. .+ ....+|.++.|+|+.... .... .... ....+
T Consensus 43 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 122 (176)
T cd01881 43 GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP 122 (176)
T ss_pred CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC
Confidence 5678999999941110 11 112468999999998763 1100 0111 13567
Q ss_pred eEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 122 DLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 122 diiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.++|+||+|+.+. .................+++.+||++|+|++++++.+...
T Consensus 123 ~ivv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 123 VIYVLNKIDLDDA--EELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred eEEEEEchhcCch--hHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 8999999999876 4443332222233345689999999999999999987653
No 122
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.46 E-value=7e-07 Score=63.52 Aligned_cols=100 Identities=20% Similarity=0.168 Sum_probs=66.6
Q ss_pred CCCEEEEeCCcchhhhcc---cccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~~~---~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
+.++.++++.|....... ....+|.+++|+|++.+..... ........+-++++||+|+.+. ....
T Consensus 44 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~--~~~~ 121 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE--RVVS 121 (157)
T ss_pred EEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc--cchH
Confidence 578999999994322111 1234699999999987542211 1122345567999999999876 3333
Q ss_pred HHH-HHHHhcCCCCCEEEEecccCCCHHHHHHHHh
Q 030407 141 VME-RDALRMRDGGPFIFAQVGWVIGIIFTLSITH 174 (178)
Q Consensus 141 ~~~-~~l~~~np~a~i~~~SA~~g~gi~el~~~l~ 174 (178)
... .......+..+++.+|+++|.|++++++++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 122 EEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 221 2222234568999999999999999999875
No 123
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.46 E-value=2.8e-07 Score=70.13 Aligned_cols=103 Identities=17% Similarity=0.060 Sum_probs=64.5
Q ss_pred CCCEEEEeCCcchh-h--hcccccccceEEEEEeCCCCCCCCc---CCCCC-----CCceeEEEEecCCCCCchh----H
Q 030407 73 KADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIG----A 137 (178)
Q Consensus 73 ~~d~iiiEttG~~~-~--~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~q-----i~~adiiviNK~Dl~~~~~----~ 137 (178)
...+.+++|.|..- . .+.....+|++++|+|.++...... .+... -..+-++|+||+|+.+... .
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v 127 (187)
T cd04132 48 IIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKV 127 (187)
T ss_pred EEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCc
Confidence 46788999999321 0 1112235799999999987543211 01000 1346799999999965310 1
Q ss_pred hHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 138 DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 138 ~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
..+...+..+..+ ..+++++||++|+|++++|+.+.+.
T Consensus 128 ~~~~~~~~~~~~~-~~~~~e~Sa~~~~~v~~~f~~l~~~ 165 (187)
T cd04132 128 TPAQAESVAKKQG-AFAYLECSAKTMENVEEVFDTAIEE 165 (187)
T ss_pred CHHHHHHHHHHcC-CcEEEEccCCCCCCHHHHHHHHHHH
Confidence 1234444444332 2378999999999999999987654
No 124
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.46 E-value=2.4e-07 Score=70.31 Aligned_cols=101 Identities=14% Similarity=0.039 Sum_probs=63.9
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---CCCC----C-CCceeEEEEecCCCCCchh----
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---KGGP----G-ITQADLLVINKTDLASAIG---- 136 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~----q-i~~adiiviNK~Dl~~~~~---- 136 (178)
...+.+++|.|.. +...+ ...+|.+|+|+|.++...... .+.. . -..+-++|.||+||.+...
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~-~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~ 126 (174)
T cd01871 48 PVNLGLWDTAGQEDYDRLRPLS-YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEK 126 (174)
T ss_pred EEEEEEEECCCchhhhhhhhhh-cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHH
Confidence 4678899999942 11222 235799999999987543211 0100 0 1356799999999964310
Q ss_pred --------HhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 137 --------ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 137 --------~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
...+...+..++.+ ..+++++||++|+|++++|+.+.+
T Consensus 127 ~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 127 LKEKKLTPITYPQGLAMAKEIG-AVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred HhhccCCCCCHHHHHHHHHHcC-CcEEEEecccccCCHHHHHHHHHH
Confidence 11122333344433 358999999999999999998865
No 125
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.45 E-value=6.5e-07 Score=80.67 Aligned_cols=101 Identities=11% Similarity=0.028 Sum_probs=64.5
Q ss_pred CEEEEeCCcch-h-hhcc-cccccceEEEEEeCCCCCCCCcC-C---CCCCCce-eEEEEecCCCCCchhHhHHHHHHHH
Q 030407 75 DLLLCESGGDN-L-AANF-SRELADYIIYIIDVSGGDKIPRK-G---GPGITQA-DLLVINKTDLASAIGADLAVMERDA 146 (178)
Q Consensus 75 d~iiiEttG~~-~-~~~~-~~~~ad~~I~VvD~~~~~~~~~~-~---~~qi~~a-diiviNK~Dl~~~~~~~~~~~~~~l 146 (178)
-+-||.|.|-. . ..+. ....+|.+++|+|+.++...+.. + ...+... -+||+||+|++++ +..+...+.+
T Consensus 52 ~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~--~~~~~v~~ei 129 (614)
T PRK10512 52 VLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDE--ARIAEVRRQV 129 (614)
T ss_pred EEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCH--HHHHHHHHHH
Confidence 36799999931 1 1111 11246999999999876432211 1 1112233 3699999999876 4444434333
Q ss_pred ----HhcC-CCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 147 ----LRMR-DGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 147 ----~~~n-p~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
+..+ ...+++++||++|+|+++|++.|..+.
T Consensus 130 ~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 130 KAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLP 165 (614)
T ss_pred HHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Confidence 3322 347899999999999999999987653
No 126
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.45 E-value=6.1e-07 Score=67.77 Aligned_cols=101 Identities=14% Similarity=0.040 Sum_probs=63.5
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
.+.+.++++.|..- ...+. ..++..++++|.++...... ........+.++++||+|+........
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~ 126 (180)
T cd04137 48 DYHLEIVDTAGQDEYSILPQKYS-IGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVST 126 (180)
T ss_pred EEEEEEEECCChHhhHHHHHHHH-hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCH
Confidence 46778999999321 11122 24688999999987542211 011112347899999999974310122
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+......+.. ..+++++||++|+|+.++++++.+.
T Consensus 127 ~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (180)
T cd04137 127 EEGKELAESW--GAAFLESSARENENVEEAFELLIEE 161 (180)
T ss_pred HHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 2233333333 3689999999999999999988754
No 127
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.45 E-value=8.3e-07 Score=68.59 Aligned_cols=102 Identities=10% Similarity=-0.019 Sum_probs=62.7
Q ss_pred CCEEEEeCCcchh-h--hcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCc-hhHhHH
Q 030407 74 ADLLLCESGGDNL-A--ANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASA-IGADLA 140 (178)
Q Consensus 74 ~d~iiiEttG~~~-~--~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~-~~~~~~ 140 (178)
..+.|+++.|..- . .......+|.+++|+|+++...... .....-..+-++|+||+|+.+. .....+
T Consensus 47 ~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~ 126 (198)
T cd04147 47 LTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAK 126 (198)
T ss_pred EEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHH
Confidence 5677899999311 1 1112235799999999987533211 0111123567999999999763 101122
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+.. ......+++++||++|.|++++++++.+.
T Consensus 127 ~~~~~~-~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 161 (198)
T cd04147 127 DALSTV-ELDWNCGFVETSAKDNENVLEVFKELLRQ 161 (198)
T ss_pred HHHHHH-HhhcCCcEEEecCCCCCCHHHHHHHHHHH
Confidence 222222 12334689999999999999999988654
No 128
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.45 E-value=9e-07 Score=67.89 Aligned_cols=99 Identities=14% Similarity=0.087 Sum_probs=62.4
Q ss_pred CCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--C-------CCC--CCCceeEEEEecCCCCCchhHh
Q 030407 74 ADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--K-------GGP--GITQADLLVINKTDLASAIGAD 138 (178)
Q Consensus 74 ~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~-------~~~--qi~~adiiviNK~Dl~~~~~~~ 138 (178)
+.+-|++|.|.. +...+. ..+|++++|+|.++...... . ... -...+-++|+||+|+.......
T Consensus 47 ~~l~i~Dt~G~~~~~~~~~~~~-~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~ 125 (190)
T cd04144 47 CMLEVLDTAGQEEYTALRDQWI-REGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVS 125 (190)
T ss_pred EEEEEEECCCchhhHHHHHHHH-HhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccC
Confidence 557789999931 112222 25799999999977532211 0 000 0234568999999996431112
Q ss_pred HHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 139 LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 139 ~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
.+...+..+..+ .+++++||++|.|++++|+++.+
T Consensus 126 ~~~~~~~~~~~~--~~~~e~SAk~~~~v~~l~~~l~~ 160 (190)
T cd04144 126 TEEGAALARRLG--CEFIEASAKTNVNVERAFYTLVR 160 (190)
T ss_pred HHHHHHHHHHhC--CEEEEecCCCCCCHHHHHHHHHH
Confidence 223334444432 58999999999999999998765
No 129
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.45 E-value=2.7e-07 Score=70.12 Aligned_cols=101 Identities=16% Similarity=0.075 Sum_probs=64.5
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---CCCCC-----CCceeEEEEecCCCCCchhHh--
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIGAD-- 138 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~q-----i~~adiiviNK~Dl~~~~~~~-- 138 (178)
++.+-+++|+|.. +...+. ..+|++|+|+|.++...... .+... -..+-++|.||+|+.+. .+
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~-~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~--~~~~ 124 (175)
T cd01874 48 PYTLGLFDTAGQEDYDRLRPLSY-PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD--PSTI 124 (175)
T ss_pred EEEEEEEECCCccchhhhhhhhc-ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhC--hhhH
Confidence 4678899999942 112222 25799999999987543211 11100 13467999999999654 21
Q ss_pred ------------HHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 139 ------------LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 139 ------------~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
.++..+..++. +..+++++||++|+|++++|+.+.+.|
T Consensus 125 ~~l~~~~~~~v~~~~~~~~a~~~-~~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 125 EKLAKNKQKPITPETGEKLARDL-KAVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred HHhhhccCCCcCHHHHHHHHHHh-CCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 12222233332 346899999999999999999887643
No 130
>PLN03118 Rab family protein; Provisional
Probab=98.44 E-value=6.9e-07 Score=69.70 Aligned_cols=101 Identities=17% Similarity=0.111 Sum_probs=64.2
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc----------CCCCCCCceeEEEEecCCCCCchhHh
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR----------KGGPGITQADLLVINKTDLASAIGAD 138 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~----------~~~~qi~~adiiviNK~Dl~~~~~~~ 138 (178)
.+.+.|++|.|.. +...+. ..+|.+++|+|.++...... .+...-...-++|+||+|+.......
T Consensus 61 ~~~l~l~Dt~G~~~~~~~~~~~~-~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~ 139 (211)
T PLN03118 61 RLKLTIWDTAGQERFRTLTSSYY-RNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVS 139 (211)
T ss_pred EEEEEEEECCCchhhHHHHHHHH-hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC
Confidence 4678899999931 112222 24799999999987532211 01111223568999999997541122
Q ss_pred HHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 139 LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 139 ~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+......++. ..+++++||++|+|++++|+.|...
T Consensus 140 ~~~~~~~~~~~--~~~~~e~SAk~~~~v~~l~~~l~~~ 175 (211)
T PLN03118 140 REEGMALAKEH--GCLFLECSAKTRENVEQCFEELALK 175 (211)
T ss_pred HHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 23333444433 3579999999999999999988653
No 131
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.44 E-value=1.3e-06 Score=66.00 Aligned_cols=102 Identities=16% Similarity=0.045 Sum_probs=62.9
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCC-----CCC--CceeEEEEecCCCCCchhH--
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGG-----PGI--TQADLLVINKTDLASAIGA-- 137 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~-----~qi--~~adiiviNK~Dl~~~~~~-- 137 (178)
...+-|++|+|.. +...+. ..+|.+++|+|+++...... .+. ... ..+-++|.||+|+.+....
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~-~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~ 126 (170)
T cd04108 48 PFSLQLWDTAGQERFKCIASTYY-RGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYAL 126 (170)
T ss_pred EEEEEEEeCCChHHHHhhHHHHh-cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccc
Confidence 4567899999931 112222 25799999999976432110 000 000 1245899999999654110
Q ss_pred hHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 138 DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 138 ~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
..+...+..++. ..+++++||++|+|++++|+.+.+.+
T Consensus 127 ~~~~~~~~~~~~--~~~~~e~Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 127 MEQDAIKLAAEM--QAEYWSVSALSGENVREFFFRVAALT 164 (170)
T ss_pred cHHHHHHHHHHc--CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 112233333333 35899999999999999999887654
No 132
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.43 E-value=1.1e-06 Score=65.87 Aligned_cols=101 Identities=15% Similarity=0.083 Sum_probs=65.3
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCCC------CCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGGP------GITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~~------qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
...+.+++|+|.. +...+. ..+|.+++|+|+++...... .+.. .-..+-++|.||+|+.++.....+
T Consensus 52 ~~~~~i~Dt~G~~~~~~~~~~~~-~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~ 130 (168)
T cd01866 52 QIKLQIWDTAGQESFRSITRSYY-RGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYE 130 (168)
T ss_pred EEEEEEEECCCcHHHHHHHHHHh-ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHH
Confidence 4578899999931 122222 24699999999986432211 0100 013457999999999754212334
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
......++. ..+++++||++|+|++++|+.+.+.
T Consensus 131 ~~~~~~~~~--~~~~~e~Sa~~~~~i~~~~~~~~~~ 164 (168)
T cd01866 131 EGEAFAKEH--GLIFMETSAKTASNVEEAFINTAKE 164 (168)
T ss_pred HHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 445555543 4689999999999999999887654
No 133
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.43 E-value=5.9e-07 Score=68.92 Aligned_cols=101 Identities=18% Similarity=0.108 Sum_probs=64.5
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---CCCCC-----CCceeEEEEecCCCCCchhHhH-
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIGADL- 139 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~q-----i~~adiiviNK~Dl~~~~~~~~- 139 (178)
+.++.|++|.|.. +...+ ...++.+|+|+|.++...... .+... -..+-++|.||+||... ...
T Consensus 47 ~~~l~i~Dt~G~~~~~~l~~~~-~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~--~~~~ 123 (189)
T cd04134 47 HIELSLWDTAGQEEFDRLRSLS-YADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREA--RNER 123 (189)
T ss_pred EEEEEEEECCCChhcccccccc-ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC--hhhH
Confidence 4678899999941 11122 235789999999887543211 11111 13467999999999765 221
Q ss_pred -------------HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 140 -------------AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 140 -------------~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
++..+..++. ...+++++||++|+|++++|+++.+.+
T Consensus 124 ~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~SAk~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 124 DDLQRYGKHTISYEEGLAVAKRI-NALRYLECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred HHHhhccCCCCCHHHHHHHHHHc-CCCEEEEccCCcCCCHHHHHHHHHHHH
Confidence 1223333332 236899999999999999999887643
No 134
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.43 E-value=1e-06 Score=65.69 Aligned_cols=101 Identities=14% Similarity=0.075 Sum_probs=63.9
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCC------CCCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~------~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
.+.+-+++++|.. +...+. ..+|++++|+|.++...... .+. ..-..+-++|.||.|+..+.....+
T Consensus 48 ~~~l~i~D~~g~~~~~~~~~~~~-~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~ 126 (161)
T cd04117 48 KVRIQIWDTAGQERYQTITKQYY-RRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDE 126 (161)
T ss_pred EEEEEEEeCCCcHhHHhhHHHHh-cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHH
Confidence 3567788999932 111222 24699999999977532211 000 0113467999999999754211223
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+.....+..+ .+++++||++|.|++++|++|.+.
T Consensus 127 ~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 127 QGNKLAKEYG--MDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred HHHHHHHHcC--CEEEEEeCCCCCCHHHHHHHHHhh
Confidence 3344444443 579999999999999999998753
No 135
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.42 E-value=7.1e-07 Score=66.89 Aligned_cols=103 Identities=17% Similarity=0.058 Sum_probs=64.4
Q ss_pred CCCEEEEeCCcchhh---hcccccccceEEEEEeCCCCCCCCc---CCCC-----CCCceeEEEEecCCCCCchh-----
Q 030407 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR---KGGP-----GITQADLLVINKTDLASAIG----- 136 (178)
Q Consensus 73 ~~d~iiiEttG~~~~---~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~-----qi~~adiiviNK~Dl~~~~~----- 136 (178)
.+.+.+++|.|..-- .......+|.+++++|.++...... .+.. --..+-++|+||+|+.+...
T Consensus 45 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~ 124 (174)
T smart00174 45 PVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLREL 124 (174)
T ss_pred EEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhh
Confidence 467889999994211 1112235799999999987533211 0100 01356799999999976310
Q ss_pred -------HhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 137 -------ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 137 -------~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+...+..+..+ ..+++++||++|+|++++|+.+.+.
T Consensus 125 ~~~~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~~~~~v~~lf~~l~~~ 170 (174)
T smart00174 125 SKQKQEPVTYEQGEALAKRIG-AVKYLECSALTQEGVREVFEEAIRA 170 (174)
T ss_pred hcccCCCccHHHHHHHHHHcC-CcEEEEecCCCCCCHHHHHHHHHHH
Confidence 11122333444432 3479999999999999999987654
No 136
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.41 E-value=1.1e-06 Score=66.13 Aligned_cols=101 Identities=16% Similarity=0.087 Sum_probs=64.3
Q ss_pred CCCCEEEEeCCcch-hh---hcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHh
Q 030407 72 FKADLLLCESGGDN-LA---ANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGAD 138 (178)
Q Consensus 72 ~~~d~iiiEttG~~-~~---~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~ 138 (178)
.++.+.++++.|.. .. ..+. ..+|.+++|+|+++...... .....-..+-++|+||+|+... ..
T Consensus 41 ~~~~~~i~D~~G~~~~~~~~~~~~-~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~--~~ 117 (167)
T cd04161 41 DKYEVCIFDLGGGANFRGIWVNYY-AEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNA--LL 117 (167)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHH-cCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCC--CC
Confidence 35788999999942 11 1222 35799999999987542211 0111124567999999999765 32
Q ss_pred HHHHHHHH--Hhc----CCCCCEEEEecccC------CCHHHHHHHHhh
Q 030407 139 LAVMERDA--LRM----RDGGPFIFAQVGWV------IGIIFTLSITHY 175 (178)
Q Consensus 139 ~~~~~~~l--~~~----np~a~i~~~SA~~g------~gi~el~~~l~~ 175 (178)
...+.+.+ .++ +...+++.+||++| .|+++-|+||.+
T Consensus 118 ~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 118 GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 33333322 121 12247888999998 899999999864
No 137
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.40 E-value=1.4e-06 Score=64.20 Aligned_cols=100 Identities=17% Similarity=0.126 Sum_probs=63.7
Q ss_pred CCEEEEeCCcchhh----hcccccccceEEEEEeCCCCCCCCc--CC------CCCCCceeEEEEecCCCCCchhHhHHH
Q 030407 74 ADLLLCESGGDNLA----ANFSRELADYIIYIIDVSGGDKIPR--KG------GPGITQADLLVINKTDLASAIGADLAV 141 (178)
Q Consensus 74 ~d~iiiEttG~~~~----~~~~~~~ad~~I~VvD~~~~~~~~~--~~------~~qi~~adiiviNK~Dl~~~~~~~~~~ 141 (178)
..+.+++|.|..-- ..+. ..+|.+++|+|.+++..... .+ ...-..+-++++||+|+.+......+.
T Consensus 49 ~~l~~~D~~G~~~~~~~~~~~~-~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~ 127 (161)
T cd01861 49 VRLQLWDTAGQERFRSLIPSYI-RDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEE 127 (161)
T ss_pred EEEEEEECCCcHHHHHHHHHHh-ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHH
Confidence 45789999994211 1111 24689999999976532211 00 011136789999999995431122233
Q ss_pred HHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 142 MERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 142 ~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.....+.. ..+++++||++|.|++++++++.+.
T Consensus 128 ~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 128 GEKKAKEL--NAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred HHHHHHHh--CCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 34444433 4789999999999999999998653
No 138
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.40 E-value=4.3e-07 Score=69.72 Aligned_cols=102 Identities=15% Similarity=0.101 Sum_probs=65.7
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---CCCCC-----CCceeEEEEecCCCCCc------
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASA------ 134 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~q-----i~~adiiviNK~Dl~~~------ 134 (178)
.+.+-+++|.|.. +...+. ..+|++++|+|.++...... .+.+. -..+-++|.||+||.+.
T Consensus 52 ~~~l~iwDtaG~e~~~~~~~~~~-~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~ 130 (182)
T cd04172 52 RIELSLWDTSGSPYYDNVRPLSY-PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVE 130 (182)
T ss_pred EEEEEEEECCCchhhHhhhhhhc-CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHH
Confidence 4778899999941 222222 35799999999987643221 11111 13457999999998541
Q ss_pred ------hhHhHHHHHHHHHhcCCCCCEEEEecccCCC-HHHHHHHHhhh
Q 030407 135 ------IGADLAVMERDALRMRDGGPFIFAQVGWVIG-IIFTLSITHYI 176 (178)
Q Consensus 135 ------~~~~~~~~~~~l~~~np~a~i~~~SA~~g~g-i~el~~~l~~~ 176 (178)
.....++..+..++.+ ..++++|||++|+| |+++|+.+.+.
T Consensus 131 ~~~~~~~~v~~~~~~~~a~~~~-~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 131 LSNHRQTPVSYDQGANMAKQIG-AATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred HHhcCCCCCCHHHHHHHHHHcC-CCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 0022334555555442 24899999999998 99999987653
No 139
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.39 E-value=1.3e-06 Score=79.86 Aligned_cols=101 Identities=17% Similarity=0.170 Sum_probs=65.0
Q ss_pred CCCEEEEeCCcch-hhhcc--cccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCchhHhHHHHHHH
Q 030407 73 KADLLLCESGGDN-LAANF--SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERD 145 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~~~~--~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~ 145 (178)
+..+.|+.|.|-. ..... ....+|.+++|+|+..+...+.. .......+-++++||+|+.+. ..+.+.+.
T Consensus 294 ~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~---~~e~v~~e 370 (742)
T CHL00189 294 NQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANA---NTERIKQQ 370 (742)
T ss_pred ceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCcccc---CHHHHHHH
Confidence 4678999999931 11110 11247999999999876432210 111234567999999999754 22333333
Q ss_pred HHh-------cCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 146 ALR-------MRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 146 l~~-------~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
++. +....+++++||++|+|+++|++++..+
T Consensus 371 L~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 371 LAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred HHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhh
Confidence 332 2223689999999999999999987654
No 140
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.39 E-value=9.4e-07 Score=70.57 Aligned_cols=102 Identities=15% Similarity=0.075 Sum_probs=66.0
Q ss_pred CCCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---CCCCC-----CCceeEEEEecCCCCCc-----
Q 030407 72 FKADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASA----- 134 (178)
Q Consensus 72 ~~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~q-----i~~adiiviNK~Dl~~~----- 134 (178)
..+.+-|++|.|.. +...+. ..+|++++|+|.++...... .+... -..+-++|.||+||.+.
T Consensus 59 ~~v~l~iwDTaG~e~~~~~~~~~~-~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~ 137 (232)
T cd04174 59 QRVELSLWDTSGSPYYDNVRPLCY-SDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLM 137 (232)
T ss_pred EEEEEEEEeCCCchhhHHHHHHHc-CCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhh
Confidence 35788999999941 223333 36899999999987653321 11010 12356899999999531
Q ss_pred -------hhHhHHHHHHHHHhcCCCCCEEEEecccCC-CHHHHHHHHhh
Q 030407 135 -------IGADLAVMERDALRMRDGGPFIFAQVGWVI-GIIFTLSITHY 175 (178)
Q Consensus 135 -------~~~~~~~~~~~l~~~np~a~i~~~SA~~g~-gi~el~~~l~~ 175 (178)
.....++.+++.++.+ ..++++|||++|+ |++++|+.+.+
T Consensus 138 ~l~~~~~~~Vs~~e~~~~a~~~~-~~~~~EtSAktg~~~V~e~F~~~~~ 185 (232)
T cd04174 138 ELSNQKQAPISYEQGCALAKQLG-AEVYLECSAFTSEKSIHSIFRSASL 185 (232)
T ss_pred hhccccCCcCCHHHHHHHHHHcC-CCEEEEccCCcCCcCHHHHHHHHHH
Confidence 0022345555565543 2268999999998 89999998754
No 141
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.39 E-value=1.4e-06 Score=64.88 Aligned_cols=101 Identities=14% Similarity=0.059 Sum_probs=63.4
Q ss_pred CCCEEEEeCCcchh-hh--cccccccceEEEEEeCCCCCCCCc--CCC------CCCCceeEEEEecCCCCCchhHhH-H
Q 030407 73 KADLLLCESGGDNL-AA--NFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADL-A 140 (178)
Q Consensus 73 ~~d~iiiEttG~~~-~~--~~~~~~ad~~I~VvD~~~~~~~~~--~~~------~qi~~adiiviNK~Dl~~~~~~~~-~ 140 (178)
.+.+.++++.|..- .. ......+|.+++++|++....... .+. ..-..+-++++||+|+.++ .+. .
T Consensus 55 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~--~~i~~ 132 (169)
T cd04114 55 KIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAER--REVSQ 132 (169)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc--cccCH
Confidence 35677889999421 11 111224699999999976532210 010 1113456999999999754 221 2
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+.+.+..+ .+++++||++|+|++++|+.+.+.
T Consensus 133 ~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 133 QRAEEFSDAQD-MYYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred HHHHHHHHHcC-CeEEEeeCCCCCCHHHHHHHHHHH
Confidence 23333444443 689999999999999999998753
No 142
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.38 E-value=9.5e-07 Score=65.79 Aligned_cols=101 Identities=14% Similarity=0.084 Sum_probs=63.4
Q ss_pred CCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--C----CCCC------CCceeEEEEecCCCCCchhH
Q 030407 74 ADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--K----GGPG------ITQADLLVINKTDLASAIGA 137 (178)
Q Consensus 74 ~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~----~~~q------i~~adiiviNK~Dl~~~~~~ 137 (178)
+-+-++++.|.. +...+. ..+|.+++++|+.+...... . +... -..+-++|+||+|+..+...
T Consensus 49 ~~~~~~D~~g~~~~~~~~~~~~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 127 (172)
T cd01862 49 VTLQIWDTAGQERFQSLGVAFY-RGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQV 127 (172)
T ss_pred EEEEEEeCCChHHHHhHHHHHh-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccccccc
Confidence 445588999932 111122 24699999999976542110 0 0000 13567899999999843112
Q ss_pred hHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 138 DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 138 ~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
..+...+..+.. ...+++++||++|.|++++++.+.+.
T Consensus 128 ~~~~~~~~~~~~-~~~~~~~~Sa~~~~gv~~l~~~i~~~ 165 (172)
T cd01862 128 STKKAQQWCQSN-GNIPYFETSAKEAINVEQAFETIARK 165 (172)
T ss_pred CHHHHHHHHHHc-CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 334445555443 33689999999999999999987754
No 143
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.38 E-value=1.4e-06 Score=68.22 Aligned_cols=100 Identities=13% Similarity=0.098 Sum_probs=62.9
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc--C-------CCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR--K-------GGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~--~-------~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
.+.+.+++|+|... ...+. ..+|.+++|+|.++...... . ....-..+-++|.||+|+.+......
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~-~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~ 129 (211)
T cd04111 51 RIKLQLWDTAGQERFRSITRSYY-RNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTR 129 (211)
T ss_pred EEEEEEEeCCcchhHHHHHHHHh-cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCH
Confidence 45788999999421 11222 34799999999987532211 0 00001123478899999975311222
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
+...+..+..+ .+++++||++|+|++++|+.|.+
T Consensus 130 ~~~~~~~~~~~--~~~~e~Sak~g~~v~e~f~~l~~ 163 (211)
T cd04111 130 EEAEKLAKDLG--MKYIETSARTGDNVEEAFELLTQ 163 (211)
T ss_pred HHHHHHHHHhC--CEEEEEeCCCCCCHHHHHHHHHH
Confidence 33444444432 68999999999999999998865
No 144
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.38 E-value=7.8e-07 Score=66.71 Aligned_cols=102 Identities=17% Similarity=0.142 Sum_probs=62.9
Q ss_pred CCCEEEEeCCcchhhh---cccccccceEEEEEeCCCCCCCCc---CCCC---C--CCceeEEEEecCCCCCchhHhH--
Q 030407 73 KADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIPR---KGGP---G--ITQADLLVINKTDLASAIGADL-- 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~---~~~~~~ad~~I~VvD~~~~~~~~~---~~~~---q--i~~adiiviNK~Dl~~~~~~~~-- 139 (178)
.+.+.+++|.|..--. ......+|.+++++|..+...... .+.. + -..+-++|+||+|+.+. ...
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~ 125 (175)
T cd01870 48 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND--EHTRR 125 (175)
T ss_pred EEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccC--hhhhh
Confidence 4678999999932111 111234688999999876432111 0100 0 13467899999998754 211
Q ss_pred ------------HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 140 ------------AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 140 ------------~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
...++..+..+ ..+++++||++|.|++++|+++.+.+
T Consensus 126 ~i~~~~~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 126 ELAKMKQEPVKPEEGRDMANKIG-AFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred hhhhccCCCccHHHHHHHHHHcC-CcEEEEeccccCcCHHHHHHHHHHHh
Confidence 12222233322 34799999999999999999988654
No 145
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.38 E-value=1.2e-06 Score=65.59 Aligned_cols=99 Identities=13% Similarity=0.119 Sum_probs=61.3
Q ss_pred CCEEEEeCCcchhhhcccccccceEEEEEeCCCCCCCCc--C-------CCCCCCceeEEEEecCCCCC--chhHhHHHH
Q 030407 74 ADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPR--K-------GGPGITQADLLVINKTDLAS--AIGADLAVM 142 (178)
Q Consensus 74 ~d~iiiEttG~~~~~~~~~~~ad~~I~VvD~~~~~~~~~--~-------~~~qi~~adiiviNK~Dl~~--~~~~~~~~~ 142 (178)
..+-+.+|.|.. ...+. ..+|.+++|+|.++...... . ....-..+-++|.||.|+.. +.....+..
T Consensus 47 ~~l~i~D~~g~~-~~~~~-~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~ 124 (158)
T cd04103 47 HLLLIRDEGGAP-DAQFA-SWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARA 124 (158)
T ss_pred EEEEEEECCCCC-chhHH-hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHH
Confidence 456678888831 12222 35799999999987653321 0 11111235689999999842 210122223
Q ss_pred HHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 143 ERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 143 ~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
.+..++. ...++++|||++|+||+++|+.+.+
T Consensus 125 ~~~~~~~-~~~~~~e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 125 RQLCADM-KRCSYYETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred HHHHHHh-CCCcEEEEecCCCCCHHHHHHHHHh
Confidence 3333332 2368999999999999999998765
No 146
>COG2403 Predicted GTPase [General function prediction only]
Probab=98.38 E-value=1.3e-06 Score=73.38 Aligned_cols=79 Identities=23% Similarity=0.246 Sum_probs=62.8
Q ss_pred CCEEEEeCCcchhhhcccccccceEEEEEeCCCCCCCCcCCCC--CCCceeEEEEecCCCCCchhHhHHHHHHHHHhcCC
Q 030407 74 ADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGP--GITQADLLVINKTDLASAIGADLAVMERDALRMRD 151 (178)
Q Consensus 74 ~d~iiiEttG~~~~~~~~~~~ad~~I~VvD~~~~~~~~~~~~~--qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np 151 (178)
-|+|++|-+|. --+++.+ |..|+|+|+.++-.....++. .++.||++++||+|-++. +..+++.+.++++||
T Consensus 225 aD~IlwdGgnn-dfPfvkp---d~~Ivvvda~rpg~ei~~~pGe~~irlAD~VIItkveea~~--~kvrkI~~~I~~iNP 298 (449)
T COG2403 225 ADFILWDGGNN-DFPFVKP---DLHIVVVDALRPGEEIGSFPGELRIRLADLVIITKVEEAMA--EKVRKIVRNIEEINP 298 (449)
T ss_pred ccEEEEeCCCC-CCCcccC---CeeEEEecCCCCchhhccCCCceeeeeccEEEEecccccch--HHHHHHHHHHHhhCC
Confidence 49999999992 2233333 999999999885443333433 478899999999999988 899999999999999
Q ss_pred CCCEEEE
Q 030407 152 GGPFIFA 158 (178)
Q Consensus 152 ~a~i~~~ 158 (178)
.|.++.+
T Consensus 299 ~A~Vi~~ 305 (449)
T COG2403 299 KAEVILA 305 (449)
T ss_pred CcEEEec
Confidence 9988876
No 147
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.37 E-value=7.2e-07 Score=76.99 Aligned_cols=96 Identities=23% Similarity=0.248 Sum_probs=64.7
Q ss_pred CCEEEEeCCcchhhhcc--ccccc--ceEEEEEeCCCCCCCCcC---C---CCCCCceeEEEEecCCCCCchhHhHHHHH
Q 030407 74 ADLLLCESGGDNLAANF--SRELA--DYIIYIIDVSGGDKIPRK---G---GPGITQADLLVINKTDLASAIGADLAVME 143 (178)
Q Consensus 74 ~d~iiiEttG~~~~~~~--~~~~a--d~~I~VvD~~~~~~~~~~---~---~~qi~~adiiviNK~Dl~~~~~~~~~~~~ 143 (178)
+-.=+|.|.| .+.-+| ++.++ .+.++|||++.|-+.+.. | ...++ -+-|+||+||..+ +.+++.
T Consensus 76 Y~lnlIDTPG-HVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~Le--IiPViNKIDLP~A---dpervk 149 (603)
T COG0481 76 YVLNLIDTPG-HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE--IIPVLNKIDLPAA---DPERVK 149 (603)
T ss_pred EEEEEcCCCC-ccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcE--EEEeeecccCCCC---CHHHHH
Confidence 4455789999 222222 22232 678999999998654321 1 11122 3789999999766 556666
Q ss_pred HHHHhcC--CCCCEEEEecccCCCHHHHHHHHhh
Q 030407 144 RDALRMR--DGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 144 ~~l~~~n--p~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
+.++..- +....+.+|||+|.||+++++.+-.
T Consensus 150 ~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~ 183 (603)
T COG0481 150 QEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVE 183 (603)
T ss_pred HHHHHHhCCCcchheeEecccCCCHHHHHHHHHh
Confidence 6666543 4568899999999999999997643
No 148
>PRK04213 GTP-binding protein; Provisional
Probab=98.36 E-value=3.9e-06 Score=64.66 Aligned_cols=80 Identities=10% Similarity=-0.069 Sum_probs=49.4
Q ss_pred cceEEEEEeCCCCCCCCcCCC---------------CCCCceeEEEEecCCCCCchhHhHHHHHHHHHhcC-C----CCC
Q 030407 95 ADYIIYIIDVSGGDKIPRKGG---------------PGITQADLLVINKTDLASAIGADLAVMERDALRMR-D----GGP 154 (178)
Q Consensus 95 ad~~I~VvD~~~~~~~~~~~~---------------~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~n-p----~a~ 154 (178)
++.++.|+|+.........+. .....+-++|+||+|+.+......+++.+.+. .. + ..+
T Consensus 91 ~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 169 (201)
T PRK04213 91 ILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNRDEVLDEIAERLG-LYPPWRQWQDI 169 (201)
T ss_pred heEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcHHHHHHHHHHHhc-CCccccccCCc
Confidence 478899999865432111110 01234669999999997651112333333322 11 1 136
Q ss_pred EEEEecccCCCHHHHHHHHhhh
Q 030407 155 FIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 155 i~~~SA~~g~gi~el~~~l~~~ 176 (178)
++++||++| |+++++++|...
T Consensus 170 ~~~~SA~~g-gi~~l~~~l~~~ 190 (201)
T PRK04213 170 IAPISAKKG-GIEELKEAIRKR 190 (201)
T ss_pred EEEEecccC-CHHHHHHHHHHh
Confidence 899999999 999999998764
No 149
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.36 E-value=2.7e-06 Score=63.55 Aligned_cols=100 Identities=10% Similarity=0.053 Sum_probs=65.1
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---------CCCC---CCCceeEEEEecCCCCCchh
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---------KGGP---GITQADLLVINKTDLASAIG 136 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~---qi~~adiiviNK~Dl~~~~~ 136 (178)
.+.+.|+++.|.. +...+. ..+|.+++++|..+...... .+.. .-..+-++|+||+|+....
T Consensus 53 ~~~l~i~D~~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~- 130 (170)
T cd04116 53 FVTLQIWDTAGQERFRSLRTPFY-RGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQ- 130 (170)
T ss_pred EEEEEEEeCCChHHHHHhHHHHh-cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccc-
Confidence 5678889999931 112222 24689999999876532211 0000 1134679999999996431
Q ss_pred HhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 137 ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 137 ~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
...+.+.+..++.+ ..+++++||++|+|++++|+.+.+
T Consensus 131 ~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 131 VSTEEAQAWCRENG-DYPYFETSAKDATNVAAAFEEAVR 168 (170)
T ss_pred cCHHHHHHHHHHCC-CCeEEEEECCCCCCHHHHHHHHHh
Confidence 23345555655543 358999999999999999998765
No 150
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.36 E-value=8.9e-07 Score=66.66 Aligned_cols=101 Identities=14% Similarity=0.125 Sum_probs=62.3
Q ss_pred CCCEEEEeCCcchhh---hcccccccceEEEEEeCCCCCCCCc---CCCCC-----CCceeEEEEecCCCCCchh-----
Q 030407 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIG----- 136 (178)
Q Consensus 73 ~~d~iiiEttG~~~~---~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~q-----i~~adiiviNK~Dl~~~~~----- 136 (178)
...+.+++|.|..-- .+.....+|.+++++|.++...... .+..+ -..+-++++||+|+.+...
T Consensus 47 ~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 126 (173)
T cd04130 47 PVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQL 126 (173)
T ss_pred EEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHH
Confidence 356778999994111 1112235799999999987543211 01110 1245699999999975410
Q ss_pred -------HhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHh
Q 030407 137 -------ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 174 (178)
Q Consensus 137 -------~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~ 174 (178)
...+...++.++. ...+++++||++|.|++++|+.+.
T Consensus 127 ~~~~~~~v~~~~~~~~a~~~-~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 127 ARYGEKPVSQSRAKALAEKI-GACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred hhcCCCCcCHHHHHHHHHHh-CCCeEEEEeCCCCCCHHHHHHHHH
Confidence 1122334444433 234899999999999999999764
No 151
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.36 E-value=2.3e-06 Score=63.12 Aligned_cols=100 Identities=15% Similarity=0.088 Sum_probs=65.6
Q ss_pred CCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCCC----C--CCceeEEEEecCCCCCchhHhHHH
Q 030407 74 ADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGGP----G--ITQADLLVINKTDLASAIGADLAV 141 (178)
Q Consensus 74 ~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~~----q--i~~adiiviNK~Dl~~~~~~~~~~ 141 (178)
..+.++++.|.. +...+. ..+|.+++|+|+++...... .+.. . -..+-++++||+|+........+.
T Consensus 49 ~~~~l~D~~G~~~~~~~~~~~~-~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~ 127 (164)
T smart00175 49 VKLQIWDTAGQERFRSITSSYY-RGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREE 127 (164)
T ss_pred EEEEEEECCChHHHHHHHHHHh-CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHH
Confidence 567799999942 111222 24799999999987543211 0000 0 145789999999997631123344
Q ss_pred HHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 142 MERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 142 ~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
..+..+.. +.+++++||++|+|++++++.+.+.
T Consensus 128 ~~~~~~~~--~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 128 AEAFAEEH--GLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred HHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 55555543 3579999999999999999988654
No 152
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.35 E-value=1.7e-06 Score=64.19 Aligned_cols=101 Identities=13% Similarity=0.029 Sum_probs=63.6
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc--CC-C-----CCCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR--KG-G-----PGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~--~~-~-----~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
.+.+-++++.|..- ...+. ..++.+++|+|+++...... .+ . ..-..+-++|+||+|+........+
T Consensus 51 ~~~~~l~D~~g~~~~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~ 129 (165)
T cd01868 51 TIKAQIWDTAGQERYRAITSAYY-RGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTE 129 (165)
T ss_pred EEEEEEEeCCChHHHHHHHHHHH-CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHH
Confidence 35788999999421 12222 24688999999976432211 00 0 0012467899999999754112223
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+..+.. ..+++++||++|+|++++++.+..-
T Consensus 130 ~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 130 EAKAFAEKN--GLSFIETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred HHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 444444432 4689999999999999999987653
No 153
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.35 E-value=2.1e-06 Score=73.43 Aligned_cols=101 Identities=17% Similarity=0.153 Sum_probs=64.0
Q ss_pred CEEEEeCCcchh--------hhccc--ccccceEEEEEeCCCCC--CCCc----------CCCC-CCCceeEEEEecCCC
Q 030407 75 DLLLCESGGDNL--------AANFS--RELADYIIYIIDVSGGD--KIPR----------KGGP-GITQADLLVINKTDL 131 (178)
Q Consensus 75 d~iiiEttG~~~--------~~~~~--~~~ad~~I~VvD~~~~~--~~~~----------~~~~-qi~~adiiviNK~Dl 131 (178)
.++|+.|.|..- ...+. ...++.+++|+|++..+ +... .+.. ....+.++|+||+|+
T Consensus 208 ~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl 287 (390)
T PRK12298 208 SFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDL 287 (390)
T ss_pred EEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCcc
Confidence 489999999421 11111 12368999999987321 1100 0111 124678999999999
Q ss_pred CCchhHhHHHHHHHHHhcCCC-CCEEEEecccCCCHHHHHHHHhhhh
Q 030407 132 ASAIGADLAVMERDALRMRDG-GPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~np~-a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
.+. .++....+.+++..+. .+++++||++++|+++|++.|.+..
T Consensus 288 ~~~--~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L 332 (390)
T PRK12298 288 LDE--EEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFI 332 (390)
T ss_pred CCh--HHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHh
Confidence 866 4444433444333333 4899999999999999999887643
No 154
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.35 E-value=2.4e-06 Score=65.03 Aligned_cols=103 Identities=17% Similarity=0.094 Sum_probs=67.9
Q ss_pred CCCCEEEEeCCcchhhhccc---ccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 72 FKADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~~~~~---~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
.+..+-+.|-.|..-..++. ...++++|+|+|+++...... .....-..+-+|++||.|+.+. ...
T Consensus 56 ~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~ 133 (175)
T PF00025_consen 56 KGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSE 133 (175)
T ss_dssp TTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STH
T ss_pred CcEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chh
Confidence 45678899998942111111 235799999999986542211 0111124577999999999876 444
Q ss_pred HHHHHHHH--hcC--CCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDAL--RMR--DGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~--~~n--p~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+.+...+. .+. ...+++.+||++|+|+.|.++||.+.
T Consensus 134 ~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 134 EEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp HHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred hHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 55555442 332 23578999999999999999999764
No 155
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.35 E-value=6.3e-07 Score=68.46 Aligned_cols=103 Identities=17% Similarity=0.080 Sum_probs=66.1
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---CCCCC-----CCceeEEEEecCCCCCch-----
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAI----- 135 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~q-----i~~adiiviNK~Dl~~~~----- 135 (178)
.+.+-|++|.|.. +...+. ..++++++|+|.++...... .+... -..+-++|.||+||.+..
T Consensus 48 ~v~l~i~Dt~G~~~~~~~~~~~~-~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~ 126 (176)
T cd04133 48 TVNLGLWDTAGQEDYNRLRPLSY-RGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLAD 126 (176)
T ss_pred EEEEEEEECCCCccccccchhhc-CCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhh
Confidence 4778899999931 122222 35799999999987543321 11111 134569999999996431
Q ss_pred -----hHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 136 -----GADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 136 -----~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
....++..++.++.+ ..++++|||++|+||+++|+.+.+.+
T Consensus 127 ~~~~~~v~~~~~~~~a~~~~-~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 127 HPGASPITTAQGEELRKQIG-AAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred ccCCCCCCHHHHHHHHHHcC-CCEEEECCCCcccCHHHHHHHHHHHH
Confidence 012334444544432 23699999999999999999887643
No 156
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.35 E-value=5.8e-07 Score=69.20 Aligned_cols=102 Identities=15% Similarity=0.053 Sum_probs=64.2
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---CCCC-----CCCceeEEEEecCCCCCchh----
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---KGGP-----GITQADLLVINKTDLASAIG---- 136 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~-----qi~~adiiviNK~Dl~~~~~---- 136 (178)
.+.+-+++|+|.. +...+. ..+|++|+|+|.++...... .+.. .-..+-++|.||.||.+...
T Consensus 50 ~~~l~i~Dt~G~e~~~~l~~~~~-~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~ 128 (191)
T cd01875 50 TVSLNLWDTAGQEEYDRLRTLSY-PQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKK 128 (191)
T ss_pred EEEEEEEECCCchhhhhhhhhhc-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHH
Confidence 5778899999941 222233 35799999999987543211 0100 01346799999999965410
Q ss_pred --------HhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 137 --------ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 137 --------~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...++..++.++.+ ..+++++||++|+|++++|+.+.+.
T Consensus 129 ~~~~~~~~v~~~~~~~~a~~~~-~~~~~e~SAk~g~~v~e~f~~l~~~ 175 (191)
T cd01875 129 LKEQGQAPITPQQGGALAKQIH-AVKYLECSALNQDGVKEVFAEAVRA 175 (191)
T ss_pred HhhccCCCCCHHHHHHHHHHcC-CcEEEEeCCCCCCCHHHHHHHHHHH
Confidence 01112233333332 2479999999999999999988754
No 157
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.34 E-value=1.1e-06 Score=76.41 Aligned_cols=95 Identities=21% Similarity=0.159 Sum_probs=63.0
Q ss_pred CCCEEEEeCCcchh----------hhcc-cccccceEEEEEeCCCCCCCCcC--CCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDNL----------AANF-SRELADYIIYIIDVSGGDKIPRK--GGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~----------~~~~-~~~~ad~~I~VvD~~~~~~~~~~--~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
+..+.++.|.|..- ..+. ....+|.+++|+|++++...... +...-..+-++|+||+|+.++ ...
T Consensus 262 g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~~--~~~ 339 (449)
T PRK05291 262 GIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLTGE--IDL 339 (449)
T ss_pred CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhcccc--chh
Confidence 45689999999410 0011 12247999999999876432210 111123467999999999866 332
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
. . .+..+++++||++|+|+++|++++.+.+
T Consensus 340 ~------~--~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 340 E------E--ENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred h------h--ccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 2 1 2345899999999999999999987653
No 158
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.34 E-value=1.3e-06 Score=75.16 Aligned_cols=98 Identities=18% Similarity=0.157 Sum_probs=67.5
Q ss_pred hCCCCEEEEeCCcchhhhcc-------------cccccceEEEEEeCCCCCCCCc-CCCC-C-CCceeEEEEecCCCCCc
Q 030407 71 LFKADLLLCESGGDNLAANF-------------SRELADYIIYIIDVSGGDKIPR-KGGP-G-ITQADLLVINKTDLASA 134 (178)
Q Consensus 71 ~~~~d~iiiEttG~~~~~~~-------------~~~~ad~~I~VvD~~~~~~~~~-~~~~-q-i~~adiiviNK~Dl~~~ 134 (178)
-.++-+.++.|.|+ +.+- ....+|.+++|+|++.+.+..+ .... . -....++|+||+||.++
T Consensus 262 i~G~pv~l~DTAGi--Ret~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 262 LNGIPVRLVDTAGI--RETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLVSK 339 (454)
T ss_pred ECCEEEEEEecCCc--ccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhcccc
Confidence 45778899999994 3221 1123799999999998633221 1111 1 12356999999999987
Q ss_pred hhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 135 IGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 135 ~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
.....+ +..+..+++.+||++|+|++.|.+.|.+..
T Consensus 340 --~~~~~~-----~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~ 375 (454)
T COG0486 340 --IELESE-----KLANGDAIISISAKTGEGLDALREAIKQLF 375 (454)
T ss_pred --cccchh-----hccCCCceEEEEecCccCHHHHHHHHHHHH
Confidence 443333 233455899999999999999999987754
No 159
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.34 E-value=7.7e-07 Score=67.94 Aligned_cols=102 Identities=15% Similarity=0.081 Sum_probs=64.5
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---CCCCC-----CCceeEEEEecCCCCCch-----
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAI----- 135 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~q-----i~~adiiviNK~Dl~~~~----- 135 (178)
.+.+-+++|.|.. +...+. ..+|++++|+|.++...... .+... -..+-++|.||+||.+..
T Consensus 48 ~~~l~iwDt~G~~~~~~~~~~~~-~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~ 126 (178)
T cd04131 48 RIELSLWDTSGSPYYDNVRPLCY-PDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLME 126 (178)
T ss_pred EEEEEEEECCCchhhhhcchhhc-CCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHH
Confidence 4778899999942 112222 35799999999987654321 11100 134579999999995410
Q ss_pred -------hHhHHHHHHHHHhcCCCCCEEEEecccCCC-HHHHHHHHhhh
Q 030407 136 -------GADLAVMERDALRMRDGGPFIFAQVGWVIG-IIFTLSITHYI 176 (178)
Q Consensus 136 -------~~~~~~~~~~l~~~np~a~i~~~SA~~g~g-i~el~~~l~~~ 176 (178)
....++..+..++.+ ..+++++||++|+| |+++|+.+.+.
T Consensus 127 ~~~~~~~~v~~~e~~~~a~~~~-~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 127 LSHQRQAPVSYEQGCAIAKQLG-AEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred HHhcCCCCCCHHHHHHHHHHhC-CCEEEECccCcCCcCHHHHHHHHHHH
Confidence 012234444444432 23789999999995 99999987653
No 160
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.34 E-value=2.3e-06 Score=64.02 Aligned_cols=101 Identities=12% Similarity=0.035 Sum_probs=62.8
Q ss_pred CCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CC-------CCCCCceeEEEEecCCCCCchhHhHH
Q 030407 74 ADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KG-------GPGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 74 ~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~-------~~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
..+-+++|.|.. +...+. ..++..++|+|.++...... .+ ...-..+-++++||.|+.+......+
T Consensus 49 ~~~~i~Dt~G~~~~~~~~~~~~-~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~ 127 (168)
T cd04177 49 CDLEILDTAGTEQFTAMRELYI-KSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSRE 127 (168)
T ss_pred EEEEEEeCCCcccchhhhHHHH-hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHH
Confidence 567789999931 111121 24688999999876532110 00 01113456899999999754212223
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+..++. ...+++++||++|+|++++|+++.+.
T Consensus 128 ~~~~~~~~~-~~~~~~~~SA~~~~~i~~~f~~i~~~ 162 (168)
T cd04177 128 DGVSLSQQW-GNVPFYETSARKRTNVDEVFIDLVRQ 162 (168)
T ss_pred HHHHHHHHc-CCceEEEeeCCCCCCHHHHHHHHHHH
Confidence 333443433 23689999999999999999988653
No 161
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.33 E-value=1.6e-06 Score=66.15 Aligned_cols=100 Identities=14% Similarity=0.161 Sum_probs=62.9
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
.+.+-+++|.|..- ...+. ..+|++++|+|.++...... .+.. -..+-++++||+|+.+......
T Consensus 48 ~~~~~i~Dt~g~~~~~~~~~~~~-~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~-~~~~~ivv~nK~Dl~~~~~v~~ 125 (188)
T cd04125 48 IIKLQIWDTNGQERFRSLNNSYY-RGAHGYLLVYDVTDQESFENLKFWINEINRYAR-ENVIKVIVANKSDLVNNKVVDS 125 (188)
T ss_pred EEEEEEEECCCcHHHHhhHHHHc-cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCCCcccccCCH
Confidence 46678899999321 11122 35799999999987543211 0100 1135699999999975411122
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+......+.. ..+++++||++|.|++++|+.|.+.
T Consensus 126 ~~~~~~~~~~--~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 126 NIAKSFCDSL--NIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred HHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 2333333332 3489999999999999999987654
No 162
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.33 E-value=1.4e-06 Score=66.59 Aligned_cols=100 Identities=12% Similarity=-0.037 Sum_probs=61.7
Q ss_pred CCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc--CCCC---C--CCceeEEEEecCCCCCchh----Hh
Q 030407 74 ADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR--KGGP---G--ITQADLLVINKTDLASAIG----AD 138 (178)
Q Consensus 74 ~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~~---q--i~~adiiviNK~Dl~~~~~----~~ 138 (178)
..+-++++.|..- ...+. ..+|.+++|+|.++...... .+.. + -..+-++|+||+|+.+... ..
T Consensus 50 ~~l~i~D~~G~~~~~~~~~~~~-~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~ 128 (193)
T cd04118 50 VTLGIWDTAGSERYEAMSRIYY-RGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVD 128 (193)
T ss_pred EEEEEEECCCchhhhhhhHhhc-CCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccC
Confidence 4456789999311 11122 25799999999976532211 0000 1 1346799999999975310 01
Q ss_pred HHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 139 LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 139 ~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+.+.+..+.. ..+++++||++|+|++++++.+.+.
T Consensus 129 ~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~i~~~ 164 (193)
T cd04118 129 FHDVQDFADEI--KAQHFETSSKTGQNVDELFQKVAED 164 (193)
T ss_pred HHHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 12233333333 4689999999999999999988754
No 163
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.32 E-value=9.6e-07 Score=69.62 Aligned_cols=99 Identities=10% Similarity=-0.012 Sum_probs=63.0
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCC-----CCCCceeEEEEecCCCCCchhHhHHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGG-----PGITQADLLVINKTDLASAIGADLAV 141 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~-----~qi~~adiiviNK~Dl~~~~~~~~~~ 141 (178)
...+-+++|.|.. +...+. ..++++|+|+|.++...... .+. ..-..+-++|.||+|+.... ...+.
T Consensus 61 ~~~l~i~Dt~G~~~~~~~~~~~~-~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~-v~~~~ 138 (219)
T PLN03071 61 KIRFYCWDTAGQEKFGGLRDGYY-IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQ 138 (219)
T ss_pred EEEEEEEECCCchhhhhhhHHHc-ccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhcc-CCHHH
Confidence 4678899999941 122222 25789999999987643211 000 01135679999999996431 11122
Q ss_pred HHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 142 MERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 142 ~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+ +..+. ...+++++||++|.|++++|++|.+.
T Consensus 139 ~-~~~~~--~~~~~~e~SAk~~~~i~~~f~~l~~~ 170 (219)
T PLN03071 139 V-TFHRK--KNLQYYEISAKSNYNFEKPFLYLARK 170 (219)
T ss_pred H-HHHHh--cCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence 2 23332 24589999999999999999987653
No 164
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.32 E-value=2.7e-06 Score=61.83 Aligned_cols=100 Identities=14% Similarity=0.091 Sum_probs=62.5
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
+..+-++++.|..- ...+ ...+|.+++|+|++....... ........+-++|+||+|+.+. ...
T Consensus 43 ~~~~~~~D~~g~~~~~~~~~~~-~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~--~~~ 119 (159)
T cd04159 43 NVTLKVWDLGGQPRFRSMWERY-CRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA--LSV 119 (159)
T ss_pred CEEEEEEECCCCHhHHHHHHHH-HhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC--cCH
Confidence 35677888999311 1111 124689999999976432110 0001123456899999999766 443
Q ss_pred HHHHHHHH--hc-CCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 140 AVMERDAL--RM-RDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 140 ~~~~~~l~--~~-np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
+.+...+. .. ....+++++||++|.|++++++++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 120 DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 33333332 11 12357899999999999999999865
No 165
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.32 E-value=2.6e-06 Score=76.37 Aligned_cols=98 Identities=12% Similarity=0.119 Sum_probs=61.9
Q ss_pred CEEEEeCCcch-hhhcc--cccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCchhHhHHHHHHHHH
Q 030407 75 DLLLCESGGDN-LAANF--SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERDAL 147 (178)
Q Consensus 75 d~iiiEttG~~-~~~~~--~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~ 147 (178)
.+.|+.|.|-. ..... ....+|.+++|+|+.++...+.. +......+-++++||+|+.+. ..+++.+.++
T Consensus 136 ~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~ 212 (587)
T TIGR00487 136 MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEA---NPDRVKQELS 212 (587)
T ss_pred EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccC---CHHHHHHHHH
Confidence 67899999921 11110 11246999999999876432211 111234567999999999654 2233334433
Q ss_pred hc-------CCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 148 RM-------RDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 148 ~~-------np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
.. ....+++++||++|+|++++++++..
T Consensus 213 ~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 213 EYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred HhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 22 12357999999999999999998753
No 166
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.32 E-value=3.4e-06 Score=65.55 Aligned_cols=102 Identities=11% Similarity=0.092 Sum_probs=61.6
Q ss_pred CCCEEEEeCCcch--hhhcc-cccccceEEEEEeCCCCCCCCcC----CCCCCCce-eEEEEecCCCCCchhHhHH----
Q 030407 73 KADLLLCESGGDN--LAANF-SRELADYIIYIIDVSGGDKIPRK----GGPGITQA-DLLVINKTDLASAIGADLA---- 140 (178)
Q Consensus 73 ~~d~iiiEttG~~--~~~~~-~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~a-diiviNK~Dl~~~~~~~~~---- 140 (178)
+..+.||.|.|.. +.... ....+|.+++|+|+..+...+.. .......+ -++++||+|+.+.. +..+
T Consensus 64 ~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~-~~~~~~~~ 142 (195)
T cd01884 64 NRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDE-ELLELVEM 142 (195)
T ss_pred CeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcH-HHHHHHHH
Confidence 5678999999931 11111 11246999999999876433211 11112333 46889999997541 2222
Q ss_pred HHHHHHHhc--C-CCCCEEEEecccCCCH----------HHHHHHHhh
Q 030407 141 VMERDALRM--R-DGGPFIFAQVGWVIGI----------IFTLSITHY 175 (178)
Q Consensus 141 ~~~~~l~~~--n-p~a~i~~~SA~~g~gi----------~el~~~l~~ 175 (178)
++.+.++.. + ..++++++||++|.++ ..|++.|..
T Consensus 143 ~i~~~l~~~g~~~~~v~iipiSa~~g~n~~~~~~w~~~~~~l~~~l~~ 190 (195)
T cd01884 143 EVRELLSKYGFDGDNTPIVRGSALKALEGDDPNKWVKKILELLDALDS 190 (195)
T ss_pred HHHHHHHHhcccccCCeEEEeeCccccCCCCCCcchhcHhHHHHHHHh
Confidence 344444433 2 2479999999999974 566666654
No 167
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.31 E-value=2.7e-06 Score=62.31 Aligned_cols=101 Identities=16% Similarity=0.062 Sum_probs=65.2
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc--C-------CCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR--K-------GGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~--~-------~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
.+.+.++++.|... ...+ ...+|.+++|+|..+...... . .......+-++++||+|+........
T Consensus 46 ~~~~~l~D~~g~~~~~~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 124 (160)
T cd00876 46 TYTLDILDTAGQEEFSAMRDLY-IRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSK 124 (160)
T ss_pred EEEEEEEECCChHHHHHHHHHH-HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecH
Confidence 35677899999321 1111 224689999999876532111 0 00112456799999999986311233
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+...+..+..+ .+++++||++|.|+++++++|.+.
T Consensus 125 ~~~~~~~~~~~--~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 125 EEGKALAKEWG--CPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred HHHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHHhh
Confidence 44555555443 689999999999999999988653
No 168
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.31 E-value=7.2e-07 Score=66.41 Aligned_cols=102 Identities=14% Similarity=0.006 Sum_probs=63.7
Q ss_pred CCCEEEEeCCcchhh---hcccccccceEEEEEeCCCCCCCCcC---CC-----CCCCceeEEEEecCCCCCchhH----
Q 030407 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPRK---GG-----PGITQADLLVINKTDLASAIGA---- 137 (178)
Q Consensus 73 ~~d~iiiEttG~~~~---~~~~~~~ad~~I~VvD~~~~~~~~~~---~~-----~qi~~adiiviNK~Dl~~~~~~---- 137 (178)
.+.+.++++.|..-- .......+|++++++|+++....... +. .....+-++|+||+|+.++...
T Consensus 47 ~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 126 (171)
T cd00157 47 QVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKL 126 (171)
T ss_pred EEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhc
Confidence 456889999993211 11111247999999999764322110 00 0113567999999999866211
Q ss_pred -------hHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 138 -------DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 138 -------~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
..+...+..... ...+++++||++|+|++++++.+.+
T Consensus 127 ~~~~~~v~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 127 EKGKEPITPEEGEKLAKEI-GAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred ccCCCccCHHHHHHHHHHh-CCeEEEEeecCCCCCHHHHHHHHhh
Confidence 122333333333 2348999999999999999998764
No 169
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.30 E-value=6.1e-06 Score=59.58 Aligned_cols=99 Identities=18% Similarity=0.134 Sum_probs=71.5
Q ss_pred CEEEEeCCcchhhhc--ccc-----cccceEEEEEeCCCCCCC-CcCCCCCCCceeEEEEecCCCCCchhHhHHHHHHHH
Q 030407 75 DLLLCESGGDNLAAN--FSR-----ELADYIIYIIDVSGGDKI-PRKGGPGITQADLLVINKTDLASAIGADLAVMERDA 146 (178)
Q Consensus 75 d~iiiEttG~~~~~~--~~~-----~~ad~~I~VvD~~~~~~~-~~~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l 146 (178)
|.-.|.|.|--+..+ |.. ..+|.++.|-.+.++... +..+........|-|++|+||++. ++++..++++
T Consensus 38 d~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~~k~vIgvVTK~DLaed--~dI~~~~~~L 115 (148)
T COG4917 38 DKGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPPGFLDIGVKKVIGVVTKADLAED--ADISLVKRWL 115 (148)
T ss_pred CccccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCcccccccccceEEEEecccccch--HhHHHHHHHH
Confidence 667788999422211 111 135778888877665432 222333344558999999999987 8999999999
Q ss_pred HhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 147 LRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 147 ~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
++.. .-+||.+|+.+..|+++|+++|...
T Consensus 116 ~eaG-a~~IF~~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 116 REAG-AEPIFETSAVDNQGVEELVDYLASL 144 (148)
T ss_pred HHcC-CcceEEEeccCcccHHHHHHHHHhh
Confidence 9875 5699999999999999999998753
No 170
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.30 E-value=3e-06 Score=65.22 Aligned_cols=96 Identities=14% Similarity=0.128 Sum_probs=58.3
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc-C---CCCCCCceeEEEEecCCCCCchh-HhHHHHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR-K---GGPGITQADLLVINKTDLASAIG-ADLAVME 143 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~-~---~~~qi~~adiiviNK~Dl~~~~~-~~~~~~~ 143 (178)
+..+.+++|.|.. ....+. ..+|.+++|+|++++..... . ...+...+-++++||+|+.+... ...+.+.
T Consensus 64 ~~~~~l~DtpG~~~~~~~~~~~~-~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~ 142 (194)
T cd01891 64 DTKINIVDTPGHADFGGEVERVL-SMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVF 142 (194)
T ss_pred CEEEEEEECCCcHHHHHHHHHHH-HhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHH
Confidence 5678899999941 111122 25799999999987532111 0 00113456799999999975421 1234444
Q ss_pred HHHHhc-----CCCCCEEEEecccCCCHHHH
Q 030407 144 RDALRM-----RDGGPFIFAQVGWVIGIIFT 169 (178)
Q Consensus 144 ~~l~~~-----np~a~i~~~SA~~g~gi~el 169 (178)
+.++.. ....+++++||++|.|+.++
T Consensus 143 ~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 143 DLFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred HHHHHhCCccccCccCEEEeehhcccccccc
Confidence 444322 12468999999999777544
No 171
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.29 E-value=2.9e-06 Score=69.33 Aligned_cols=79 Identities=18% Similarity=0.078 Sum_probs=53.8
Q ss_pred ccceEEEEEeCCCCCCCCcC-CCCCC-CceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHH
Q 030407 94 LADYIIYIIDVSGGDKIPRK-GGPGI-TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS 171 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~~-~~~qi-~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~ 171 (178)
.+|.++.|+|+..+...... ....+ ..+-++|+||+|++++ ...+...+.+++ ...+++.+||++|.|+++|.+
T Consensus 21 ~aDvVl~V~Dar~p~~~~~~~i~~~l~~kp~IiVlNK~DL~~~--~~~~~~~~~~~~--~~~~vi~iSa~~~~gi~~L~~ 96 (276)
T TIGR03596 21 LVDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADLADP--AVTKQWLKYFEE--KGIKALAINAKKGKGVKKIIK 96 (276)
T ss_pred hCCEEEEEEeCCCCCCCCChhHHHHHCCCCEEEEEEccccCCH--HHHHHHHHHHHH--cCCeEEEEECCCcccHHHHHH
Confidence 46999999999765432211 11111 3457999999999866 444444444443 235789999999999999998
Q ss_pred HHhhh
Q 030407 172 ITHYI 176 (178)
Q Consensus 172 ~l~~~ 176 (178)
.+.+.
T Consensus 97 ~i~~~ 101 (276)
T TIGR03596 97 AAKKL 101 (276)
T ss_pred HHHHH
Confidence 87654
No 172
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.28 E-value=3.1e-06 Score=72.87 Aligned_cols=101 Identities=17% Similarity=0.106 Sum_probs=63.5
Q ss_pred CCEEEEeCCcch-hhhcccc--cccceEEEEEeCCCCC-CCCc-C---CCCCCCc-eeEEEEecCCCCCchhHhH----H
Q 030407 74 ADLLLCESGGDN-LAANFSR--ELADYIIYIIDVSGGD-KIPR-K---GGPGITQ-ADLLVINKTDLASAIGADL----A 140 (178)
Q Consensus 74 ~d~iiiEttG~~-~~~~~~~--~~ad~~I~VvD~~~~~-~~~~-~---~~~qi~~-adiiviNK~Dl~~~~~~~~----~ 140 (178)
..+.|+.|.|-. +...+.. ..+|.+++|+|++++. .... . ....... .-++|+||+|+.++ .+. +
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~--~~~~~~~~ 162 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSK--ERALENYE 162 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccc--hhHHHHHH
Confidence 567899999931 1122211 2359999999998764 2211 0 0011222 34888999999875 333 2
Q ss_pred HHHHHHHhc-CCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRM-RDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~-np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+.+.++.. ....+++++||++|+|+++|++.|...
T Consensus 163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~ 199 (411)
T PRK04000 163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEE 199 (411)
T ss_pred HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHh
Confidence 333333321 234689999999999999999998763
No 173
>PLN03110 Rab GTPase; Provisional
Probab=98.28 E-value=2e-06 Score=67.52 Aligned_cols=101 Identities=10% Similarity=0.038 Sum_probs=62.7
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCC------CCCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~------~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
.+.+-|++|+|.. +...+. ..++++++|+|.++...... .+. ..-..+-++|.||+|+........+
T Consensus 60 ~~~l~l~Dt~G~~~~~~~~~~~~-~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~ 138 (216)
T PLN03110 60 TVKAQIWDTAGQERYRAITSAYY-RGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEE 138 (216)
T ss_pred EEEEEEEECCCcHHHHHHHHHHh-CCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHH
Confidence 4578888999931 112222 35799999999976532211 000 0113467999999999654111112
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
....... . ...+++++||++|+|++++|+.+...
T Consensus 139 ~~~~l~~-~-~~~~~~e~SA~~g~~v~~lf~~l~~~ 172 (216)
T PLN03110 139 DGQALAE-K-EGLSFLETSALEATNVEKAFQTILLE 172 (216)
T ss_pred HHHHHHH-H-cCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 2222222 2 35789999999999999999987543
No 174
>COG2262 HflX GTPases [General function prediction only]
Probab=98.27 E-value=2.5e-06 Score=72.40 Aligned_cols=98 Identities=18% Similarity=0.176 Sum_probs=64.3
Q ss_pred CCCEEEEeCCcc------hhhhcccc-----cccceEEEEEeCCCCCCCCc-----C-C--CCCCCceeEEEEecCCCCC
Q 030407 73 KADLLLCESGGD------NLAANFSR-----ELADYIIYIIDVSGGDKIPR-----K-G--GPGITQADLLVINKTDLAS 133 (178)
Q Consensus 73 ~~d~iiiEttG~------~~~~~~~~-----~~ad~~I~VvD~~~~~~~~~-----~-~--~~qi~~adiiviNK~Dl~~ 133 (178)
+..+++-+|+|- -+.+.|.. ..+|.++.|||++++..... . . ...-..+-++|.||+|+++
T Consensus 239 g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~ 318 (411)
T COG2262 239 GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLE 318 (411)
T ss_pred CceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccC
Confidence 467999999993 12222221 13699999999998732110 0 0 0112346799999999987
Q ss_pred chhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 134 AIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 134 ~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
+ .. ....+....| ..+.+||++|+|++.|.+.|....
T Consensus 319 ~--~~---~~~~~~~~~~--~~v~iSA~~~~gl~~L~~~i~~~l 355 (411)
T COG2262 319 D--EE---ILAELERGSP--NPVFISAKTGEGLDLLRERIIELL 355 (411)
T ss_pred c--hh---hhhhhhhcCC--CeEEEEeccCcCHHHHHHHHHHHh
Confidence 7 43 2223333333 689999999999999999876543
No 175
>PRK12289 GTPase RsgA; Reviewed
Probab=98.26 E-value=1.8e-06 Score=72.91 Aligned_cols=77 Identities=21% Similarity=0.173 Sum_probs=53.6
Q ss_pred cceEEEEEeCCCCCCCC---cCCC---CCCCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHH
Q 030407 95 ADYIIYIIDVSGGDKIP---RKGG---PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIF 168 (178)
Q Consensus 95 ad~~I~VvD~~~~~~~~---~~~~---~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~e 168 (178)
+|.+++|+|+.++.... ..+. ......-++|+||+||+++ .+.+...+.++.+ +.+++++||++|+|+++
T Consensus 90 vD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~--~~~~~~~~~~~~~--g~~v~~iSA~tg~GI~e 165 (352)
T PRK12289 90 ADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSP--TEQQQWQDRLQQW--GYQPLFISVETGIGLEA 165 (352)
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCCh--HHHHHHHHHHHhc--CCeEEEEEcCCCCCHHH
Confidence 58999999997643211 1111 1123456999999999876 5555555555543 45899999999999999
Q ss_pred HHHHHhh
Q 030407 169 TLSITHY 175 (178)
Q Consensus 169 l~~~l~~ 175 (178)
|++.+..
T Consensus 166 L~~~L~~ 172 (352)
T PRK12289 166 LLEQLRN 172 (352)
T ss_pred Hhhhhcc
Confidence 9998753
No 176
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.26 E-value=3.2e-06 Score=75.96 Aligned_cols=100 Identities=20% Similarity=0.095 Sum_probs=62.9
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCcC--CC--CCCCceeEEEEecCCCCCchhHhHHHHHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPRK--GG--PGITQADLLVINKTDLASAIGADLAVMER 144 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~~--~~--~qi~~adiiviNK~Dl~~~~~~~~~~~~~ 144 (178)
.+.+.|+.|.|.. ....+ ...+|++++|+|++++...+.. +. .....+-++|+||+|+.+. . .+...+
T Consensus 69 ~~~l~liDTPG~~dF~~~v~~~-l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~--~-~~~~~~ 144 (595)
T TIGR01393 69 TYVLNLIDTPGHVDFSYEVSRS-LAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSA--D-PERVKK 144 (595)
T ss_pred EEEEEEEECCCcHHHHHHHHHH-HHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCcc--C-HHHHHH
Confidence 3668899999931 11111 1246999999999886543221 00 0123356999999999754 1 122222
Q ss_pred HHHhcC--CCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 145 DALRMR--DGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 145 ~l~~~n--p~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+++.. +..+++++||++|.|++++++.|.+.
T Consensus 145 el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~ 178 (595)
T TIGR01393 145 EIEEVIGLDASEAILASAKTGIGIEEILEAIVKR 178 (595)
T ss_pred HHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHh
Confidence 333222 22368999999999999999988654
No 177
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.26 E-value=5.7e-06 Score=71.52 Aligned_cols=99 Identities=20% Similarity=0.209 Sum_probs=62.4
Q ss_pred CCCEEEEeCCcch--------hhhcccc--cccceEEEEEeCCCCC--CCC----------cCCCC-CCCceeEEEEecC
Q 030407 73 KADLLLCESGGDN--------LAANFSR--ELADYIIYIIDVSGGD--KIP----------RKGGP-GITQADLLVINKT 129 (178)
Q Consensus 73 ~~d~iiiEttG~~--------~~~~~~~--~~ad~~I~VvD~~~~~--~~~----------~~~~~-qi~~adiiviNK~ 129 (178)
+..++|+.+.|.. +...|.. ..++.+++|+|++..+ +.. ..+.+ ....+-+||+||+
T Consensus 205 ~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~ 284 (424)
T PRK12297 205 GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKM 284 (424)
T ss_pred CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCC
Confidence 3568899999941 1112221 2368999999997531 110 01212 2356789999999
Q ss_pred CCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 130 DLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 130 Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
|+... . +.+.+..+.+. .+++++||++|+|+++|++++.+.+
T Consensus 285 DL~~~--~--e~l~~l~~~l~--~~i~~iSA~tgeGI~eL~~~L~~~l 326 (424)
T PRK12297 285 DLPEA--E--ENLEEFKEKLG--PKVFPISALTGQGLDELLYAVAELL 326 (424)
T ss_pred CCcCC--H--HHHHHHHHHhC--CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 98543 2 22222223322 5899999999999999999887543
No 178
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.24 E-value=4.9e-06 Score=78.62 Aligned_cols=101 Identities=19% Similarity=0.155 Sum_probs=61.6
Q ss_pred CCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCchh---------
Q 030407 74 ADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIG--------- 136 (178)
Q Consensus 74 ~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~~--------- 136 (178)
|.+.|+.|.|.. +... ....+|.+++|+|++++...+.. .......+-++++||+|+.+...
T Consensus 526 p~i~fiDTPGhe~F~~lr~~-g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~ 604 (1049)
T PRK14845 526 PGLLFIDTPGHEAFTSLRKR-GGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLL 604 (1049)
T ss_pred CcEEEEECCCcHHHHHHHHh-hcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhh
Confidence 558999999931 1111 11247999999999876432211 00112346799999999974200
Q ss_pred -------HhHHHHHHH-------HH-------------hcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 137 -------ADLAVMERD-------AL-------------RMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 137 -------~~~~~~~~~-------l~-------------~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
...+++... +. +.....+++++||+||+||++|+++|..
T Consensus 605 ~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 605 NFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 001112111 11 1123569999999999999999988754
No 179
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.23 E-value=2.4e-06 Score=64.02 Aligned_cols=101 Identities=15% Similarity=0.127 Sum_probs=63.1
Q ss_pred CCCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc------CC-CCCCCceeEEEEecCCCCCchhHhHH
Q 030407 72 FKADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR------KG-GPGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 72 ~~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~------~~-~~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
.+..+-++++.|.. +...+. ..+|++++|+|+++...... .. ...-..+-++|+||+|+..+ ...+
T Consensus 42 ~~~~l~i~Dt~G~~~~~~~~~~~~-~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~ 118 (164)
T cd04162 42 QDAIMELLEIGGSQNLRKYWKRYL-SGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAA--RSVQ 118 (164)
T ss_pred CCeEEEEEECCCCcchhHHHHHHH-hhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCC--CCHH
Confidence 35778899999942 112222 35799999999987532110 01 00123457999999999765 3333
Q ss_pred HHHHHH--Hhc--CCCCCEEEEeccc------CCCHHHHHHHHhh
Q 030407 141 VMERDA--LRM--RDGGPFIFAQVGW------VIGIIFTLSITHY 175 (178)
Q Consensus 141 ~~~~~l--~~~--np~a~i~~~SA~~------g~gi~el~~~l~~ 175 (178)
.+.+.+ .++ ....+++++||++ ++|++++|+.+-.
T Consensus 119 ~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 119 EIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred HHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 333222 112 1235789999999 9999999998753
No 180
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.23 E-value=6.2e-06 Score=61.88 Aligned_cols=102 Identities=14% Similarity=0.086 Sum_probs=63.1
Q ss_pred CCCEEEEeCCcch-hhhc---ccccccceEEEEEeCCCCCCCCc--C-------CCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDN-LAAN---FSRELADYIIYIIDVSGGDKIPR--K-------GGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~~~---~~~~~ad~~I~VvD~~~~~~~~~--~-------~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
...+-+++|.|.. .... .....+|++++|+|+++...... . ....-..+-++|+||+|+........
T Consensus 50 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~ 129 (170)
T cd04115 50 RIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPT 129 (170)
T ss_pred EEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCH
Confidence 4678899999932 1111 11224699999999987543211 0 11112356799999999865411112
Q ss_pred HHHHHHHHhcCCCCCEEEEeccc---CCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGW---VIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~---g~gi~el~~~l~~~ 176 (178)
+...+..+.. ..+++++||++ +.+++++|..+.+.
T Consensus 130 ~~~~~~~~~~--~~~~~e~Sa~~~~~~~~i~~~f~~l~~~ 167 (170)
T cd04115 130 DLAQRFADAH--SMPLFETSAKDPSENDHVEAIFMTLAHK 167 (170)
T ss_pred HHHHHHHHHc--CCcEEEEeccCCcCCCCHHHHHHHHHHH
Confidence 2233333332 36899999999 99999999877653
No 181
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.22 E-value=4.2e-06 Score=71.96 Aligned_cols=102 Identities=17% Similarity=0.093 Sum_probs=63.7
Q ss_pred CCCEEEEeCCcch-hh-hccc-ccccceEEEEEeCCCCC-CCCc-CCC---CCCCc-eeEEEEecCCCCCchhHhH----
Q 030407 73 KADLLLCESGGDN-LA-ANFS-RELADYIIYIIDVSGGD-KIPR-KGG---PGITQ-ADLLVINKTDLASAIGADL---- 139 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~-~~~~-~~~ad~~I~VvD~~~~~-~~~~-~~~---~qi~~-adiiviNK~Dl~~~~~~~~---- 139 (178)
...+.|+.|.|-. .. .++. ...+|.+++|+|++++. ..+. .+. ..+.. .-++++||+|+.++ +..
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~--~~~~~~~ 156 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSK--EKALENY 156 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCH--HHHHHHH
Confidence 3568899999931 11 1111 12369999999998764 2111 100 11222 24888999999876 333
Q ss_pred HHHHHHHHhc-CCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRM-RDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~-np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+++.+.++.. ....+++++||++|+|+++|+++|...
T Consensus 157 ~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~ 194 (406)
T TIGR03680 157 EEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKF 194 (406)
T ss_pred HHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHh
Confidence 3333333322 124689999999999999999998763
No 182
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.22 E-value=4.6e-06 Score=75.04 Aligned_cols=100 Identities=18% Similarity=0.122 Sum_probs=63.1
Q ss_pred CCCEEEEeCCcch-h---hhcccccccceEEEEEeCCCCCCCCcC--C--CCCCCceeEEEEecCCCCCchhHhHHHHHH
Q 030407 73 KADLLLCESGGDN-L---AANFSRELADYIIYIIDVSGGDKIPRK--G--GPGITQADLLVINKTDLASAIGADLAVMER 144 (178)
Q Consensus 73 ~~d~iiiEttG~~-~---~~~~~~~~ad~~I~VvD~~~~~~~~~~--~--~~qi~~adiiviNK~Dl~~~~~~~~~~~~~ 144 (178)
++.+-|+.|.|.. . ...+ ...+|++++|+|++++...+.. + ......+-++|+||+|+.+. ..+...+
T Consensus 73 ~~~lnLiDTPGh~dF~~~v~~s-l~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a---~~~~v~~ 148 (600)
T PRK05433 73 TYILNLIDTPGHVDFSYEVSRS-LAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAA---DPERVKQ 148 (600)
T ss_pred cEEEEEEECCCcHHHHHHHHHH-HHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcc---cHHHHHH
Confidence 4668899999931 0 0111 1246999999999887543211 0 00123356999999999754 1222223
Q ss_pred HHHhcC--CCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 145 DALRMR--DGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 145 ~l~~~n--p~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+++.. +..+++++||++|.|+++++++|...
T Consensus 149 ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~ 182 (600)
T PRK05433 149 EIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVER 182 (600)
T ss_pred HHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHh
Confidence 333221 22369999999999999999998653
No 183
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.21 E-value=5.5e-06 Score=76.44 Aligned_cols=99 Identities=13% Similarity=0.145 Sum_probs=62.0
Q ss_pred CCEEEEeCCcch-hhhccc--ccccceEEEEEeCCCCCCCCc----CCCCCCCceeEEEEecCCCCCchhHhHHHHHHHH
Q 030407 74 ADLLLCESGGDN-LAANFS--RELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGADLAVMERDA 146 (178)
Q Consensus 74 ~d~iiiEttG~~-~~~~~~--~~~ad~~I~VvD~~~~~~~~~----~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l 146 (178)
..+.|+.|.|-. ...... ...+|.+++|+|+.++...+. .+......+-++++||+|+... ..+.+.+.+
T Consensus 337 ~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a---~~e~V~~eL 413 (787)
T PRK05306 337 GKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGA---NPDRVKQEL 413 (787)
T ss_pred EEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECcccccc---CHHHHHHHH
Confidence 456789999931 011111 123689999999987643221 1111234567999999999654 222333322
Q ss_pred Hh-------cCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 147 LR-------MRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 147 ~~-------~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
.. +....+++++||++|+|+++|++++..
T Consensus 414 ~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 414 SEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred HHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence 22 223468999999999999999998753
No 184
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.21 E-value=7.1e-06 Score=59.51 Aligned_cols=99 Identities=15% Similarity=0.082 Sum_probs=63.3
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc--CCC------CCCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~------~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
..++.++++.|... ...+. ..+|.+++++|+.+...... .+. ..-..+-++++||+|+..+.....+
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~-~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 126 (159)
T cd00154 48 TVKLQIWDTAGQERFRSITPSYY-RGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTE 126 (159)
T ss_pred EEEEEEEecCChHHHHHHHHHHh-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHH
Confidence 46788999999421 11111 24699999999977432110 000 0012456999999999622112334
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 174 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~ 174 (178)
.+.+..+. ...+++.+||++|.|++++++++.
T Consensus 127 ~~~~~~~~--~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 127 EAQQFAKE--NGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred HHHHHHHH--cCCeEEEEecCCCCCHHHHHHHHh
Confidence 45555544 356899999999999999999875
No 185
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.21 E-value=4.4e-06 Score=62.56 Aligned_cols=103 Identities=13% Similarity=0.036 Sum_probs=62.5
Q ss_pred CCCEEEEeCCcchhh---hcccccccceEEEEEeCCCCCCCCc---CC-----CCCCCceeEEEEecCCCCCchh-----
Q 030407 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR---KG-----GPGITQADLLVINKTDLASAIG----- 136 (178)
Q Consensus 73 ~~d~iiiEttG~~~~---~~~~~~~ad~~I~VvD~~~~~~~~~---~~-----~~qi~~adiiviNK~Dl~~~~~----- 136 (178)
.+.+-+++|.|...- .......+|.+++++|..+...... .+ ...-..+-++++||+|+.+...
T Consensus 47 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~ 126 (174)
T cd04135 47 QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARL 126 (174)
T ss_pred EEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHH
Confidence 356678999993211 1111234689999999977543211 00 0112345699999999965410
Q ss_pred -------HhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 137 -------ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 137 -------~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+......++.+ ..+++++||++|.|++++|+.+...
T Consensus 127 ~~~~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 127 NDMKEKPVTVEQGQKLAKEIG-AHCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred hhccCCCCCHHHHHHHHHHcC-CCEEEEecCCcCCCHHHHHHHHHHH
Confidence 01122333444432 3479999999999999999977553
No 186
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.20 E-value=2.4e-06 Score=76.73 Aligned_cols=101 Identities=16% Similarity=0.116 Sum_probs=62.8
Q ss_pred CCCEEEEeCCcch-hh---------hcc-cccccceEEEEEeCCCCCCCCcCCC--CCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDN-LA---------ANF-SRELADYIIYIIDVSGGDKIPRKGG--PGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~---------~~~-~~~~ad~~I~VvD~~~~~~~~~~~~--~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
+..+.+++|.|.. .. ..+ ....+|.++.|+|+++.+....... .....+-++++||+|+.++ ...
T Consensus 40 ~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler~l~l~~ql~~~~~PiIIVlNK~Dl~~~--~~i 117 (591)
T TIGR00437 40 GEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLERNLYLTLQLLELGIPMILALNLVDEAEK--KGI 117 (591)
T ss_pred CeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchhhHHHHHHHHhcCCCEEEEEehhHHHHh--CCC
Confidence 3457889999941 11 111 1124699999999987543211000 1134567999999999754 221
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
..-.+.+.+.. +.+++++||++|+|++++++.+.+.
T Consensus 118 ~~d~~~L~~~l-g~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 118 RIDEEKLEERL-GVPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred hhhHHHHHHHc-CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 11122333222 3689999999999999999998764
No 187
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.20 E-value=2.1e-06 Score=67.60 Aligned_cols=96 Identities=14% Similarity=0.139 Sum_probs=56.1
Q ss_pred CCCCEEEEeCCcch-hhh-ccc-ccccceEEEEEeCCCCCCC-------CcC----CCCCCC-ceeEEEEecCCCCCc--
Q 030407 72 FKADLLLCESGGDN-LAA-NFS-RELADYIIYIIDVSGGDKI-------PRK----GGPGIT-QADLLVINKTDLASA-- 134 (178)
Q Consensus 72 ~~~d~iiiEttG~~-~~~-~~~-~~~ad~~I~VvD~~~~~~~-------~~~----~~~qi~-~adiiviNK~Dl~~~-- 134 (178)
.++.+.|++|.|.. ... .+. ...+|.+++|+|++.+... ... ...... .+-++++||+|+.++
T Consensus 75 ~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~ 154 (219)
T cd01883 75 EKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNW 154 (219)
T ss_pred CCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccc
Confidence 36788999999931 111 111 1246999999999875210 000 001122 245779999999832
Q ss_pred hhHhHHHHHH----HHHhcC---CCCCEEEEecccCCCHH
Q 030407 135 IGADLAVMER----DALRMR---DGGPFIFAQVGWVIGII 167 (178)
Q Consensus 135 ~~~~~~~~~~----~l~~~n---p~a~i~~~SA~~g~gi~ 167 (178)
..+..+.+.+ .++... ...+++++||++|+|++
T Consensus 155 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 155 SEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1122333333 334332 13689999999999986
No 188
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.20 E-value=2.5e-06 Score=63.48 Aligned_cols=101 Identities=15% Similarity=0.054 Sum_probs=62.8
Q ss_pred CCEEEEeCCcchh--hh--cccccccceEEEEEeCCCCCCCCc---------CCCC-CCCceeEEEEecCCCCCchhHhH
Q 030407 74 ADLLLCESGGDNL--AA--NFSRELADYIIYIIDVSGGDKIPR---------KGGP-GITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 74 ~d~iiiEttG~~~--~~--~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~-qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
..+-++++.|..- .. ......+|.+++++|+++...... .... ....+-++|+||+|+........
T Consensus 47 ~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~ 126 (165)
T cd04146 47 VSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVST 126 (165)
T ss_pred EEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCH
Confidence 4567899999321 00 001124799999999987643210 0111 12456799999999864311122
Q ss_pred HHHHHHHHhcCCCCCEEEEecccC-CCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWV-IGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g-~gi~el~~~l~~~ 176 (178)
+...+..+..+ .+++++||++| .|++++|+.+.+.
T Consensus 127 ~~~~~~~~~~~--~~~~e~Sa~~~~~~v~~~f~~l~~~ 162 (165)
T cd04146 127 EEGEKLASELG--CLFFEVSAAEDYDGVHSVFHELCRE 162 (165)
T ss_pred HHHHHHHHHcC--CEEEEeCCCCCchhHHHHHHHHHHH
Confidence 33444444443 58999999999 5999999988654
No 189
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.19 E-value=2.1e-06 Score=65.21 Aligned_cols=91 Identities=15% Similarity=0.086 Sum_probs=57.6
Q ss_pred CEEEEeCCcchhh--------------hcccc--cccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCc
Q 030407 75 DLLLCESGGDNLA--------------ANFSR--ELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 134 (178)
Q Consensus 75 d~iiiEttG~~~~--------------~~~~~--~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~ 134 (178)
.+.++.|.|.... ..+.. ...+.+++|+|++++...... .......+-++++||+|+.++
T Consensus 65 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 65 GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKK 144 (179)
T ss_pred cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCH
Confidence 6899999994210 01111 124789999999765332211 111234567999999999865
Q ss_pred hhHh----HHHHHHHHHhcCCCCCEEEEecccCCCHH
Q 030407 135 IGAD----LAVMERDALRMRDGGPFIFAQVGWVIGII 167 (178)
Q Consensus 135 ~~~~----~~~~~~~l~~~np~a~i~~~SA~~g~gi~ 167 (178)
.+ .+.+++.++...+..+++++||++|+|++
T Consensus 145 --~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 145 --SELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred --HHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 33 34455555544344689999999999974
No 190
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.19 E-value=4.6e-06 Score=63.70 Aligned_cols=102 Identities=15% Similarity=0.013 Sum_probs=64.1
Q ss_pred CCEEEEeCCcchh-------h-------hcccc--cccceEEEEEeCCCCCCCCc----CCCCCCCceeEEEEecCCCCC
Q 030407 74 ADLLLCESGGDNL-------A-------ANFSR--ELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLAS 133 (178)
Q Consensus 74 ~d~iiiEttG~~~-------~-------~~~~~--~~ad~~I~VvD~~~~~~~~~----~~~~qi~~adiiviNK~Dl~~ 133 (178)
.++.|+.|.|... . ..+.. ...+.+++++|+..+..... .+........++++||+|+.+
T Consensus 70 ~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~ 149 (196)
T PRK00454 70 DKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLK 149 (196)
T ss_pred CeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCC
Confidence 6789999999421 0 11111 12356788889876432211 011112345689999999987
Q ss_pred chhHhHHHHHHHHHhcC-C-CCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 134 AIGADLAVMERDALRMR-D-GGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 134 ~~~~~~~~~~~~l~~~n-p-~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
. .+.+...+.+++.. + ..+++++||++|+|++++++.+.+.+
T Consensus 150 ~--~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 150 K--GERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred H--HHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 6 45444333333221 1 46999999999999999999988765
No 191
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.19 E-value=6e-06 Score=60.58 Aligned_cols=81 Identities=16% Similarity=0.067 Sum_probs=54.1
Q ss_pred cceEEEEEeCCCCCCCCc----CCCCCCCceeEEEEecCCCCCchhHhHHHHH----HHHHhcCCCCCEEEEecccCCCH
Q 030407 95 ADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGADLAVME----RDALRMRDGGPFIFAQVGWVIGI 166 (178)
Q Consensus 95 ad~~I~VvD~~~~~~~~~----~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~----~~l~~~np~a~i~~~SA~~g~gi 166 (178)
.+.++.++|......... .+......+.++++||+|+.++ .+..... ..++...+..+++++||+++.|+
T Consensus 82 ~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~ 159 (170)
T cd01876 82 LKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKK--SELAKALKEIKKELKLFEIDPPIILFSSLKGQGI 159 (170)
T ss_pred hhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCCh--HHHHHHHHHHHHHHHhccCCCceEEEecCCCCCH
Confidence 367888999876532211 1111234567999999999866 4433333 33332345679999999999999
Q ss_pred HHHHHHHhhhh
Q 030407 167 IFTLSITHYIV 177 (178)
Q Consensus 167 ~el~~~l~~~~ 177 (178)
++++++|.+.+
T Consensus 160 ~~l~~~l~~~~ 170 (170)
T cd01876 160 DELRALIEKWL 170 (170)
T ss_pred HHHHHHHHHhC
Confidence 99999998753
No 192
>PLN03108 Rab family protein; Provisional
Probab=98.17 E-value=7.3e-06 Score=64.07 Aligned_cols=99 Identities=16% Similarity=0.122 Sum_probs=62.5
Q ss_pred CCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CC-C-----CCCCceeEEEEecCCCCCchhHhHHH
Q 030407 74 ADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KG-G-----PGITQADLLVINKTDLASAIGADLAV 141 (178)
Q Consensus 74 ~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~-~-----~qi~~adiiviNK~Dl~~~~~~~~~~ 141 (178)
..+-+++|.|.. +...+. ..+|.+++|+|++....... .+ . ..-..+-+++.||+|+........+.
T Consensus 55 i~l~l~Dt~G~~~~~~~~~~~~-~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~ 133 (210)
T PLN03108 55 IKLQIWDTAGQESFRSITRSYY-RGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEE 133 (210)
T ss_pred EEEEEEeCCCcHHHHHHHHHHh-ccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHH
Confidence 446688999931 111122 24689999999987542211 00 0 00134569999999997531123344
Q ss_pred HHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 142 MERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 142 ~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
..+..++. ..+++++||++|.|++++|+++.+
T Consensus 134 ~~~~~~~~--~~~~~e~Sa~~~~~v~e~f~~l~~ 165 (210)
T PLN03108 134 GEQFAKEH--GLIFMEASAKTAQNVEEAFIKTAA 165 (210)
T ss_pred HHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHH
Confidence 55555544 358999999999999999987654
No 193
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.16 E-value=6.4e-06 Score=67.66 Aligned_cols=79 Identities=19% Similarity=0.093 Sum_probs=53.9
Q ss_pred ccceEEEEEeCCCCCCCCcC-CCCCC-CceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHH
Q 030407 94 LADYIIYIIDVSGGDKIPRK-GGPGI-TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS 171 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~~-~~~qi-~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~ 171 (178)
.+|.++.|+|+..+...... ....+ ..+-++|+||+|+.+. ...+...+.+++. ..+++.+||+++.|++++.+
T Consensus 24 ~aDvIL~VvDar~p~~~~~~~l~~~~~~kp~iiVlNK~DL~~~--~~~~~~~~~~~~~--~~~vi~vSa~~~~gi~~L~~ 99 (287)
T PRK09563 24 LVDVVIEVLDARIPLSSENPMIDKIIGNKPRLLILNKSDLADP--EVTKKWIEYFEEQ--GIKALAINAKKGQGVKKILK 99 (287)
T ss_pred hCCEEEEEEECCCCCCCCChhHHHHhCCCCEEEEEEchhcCCH--HHHHHHHHHHHHc--CCeEEEEECCCcccHHHHHH
Confidence 36999999999765432211 11111 3567999999999766 4444444444432 35789999999999999998
Q ss_pred HHhhh
Q 030407 172 ITHYI 176 (178)
Q Consensus 172 ~l~~~ 176 (178)
.+.++
T Consensus 100 ~l~~~ 104 (287)
T PRK09563 100 AAKKL 104 (287)
T ss_pred HHHHH
Confidence 87654
No 194
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.16 E-value=5.6e-06 Score=68.17 Aligned_cols=107 Identities=16% Similarity=0.105 Sum_probs=65.7
Q ss_pred hCCCCEEEEeCCcchh----h-----hc----c--cccccceEEEEEeCCCCCCC--Cc---CCCCCCCceeEEEEecCC
Q 030407 71 LFKADLLLCESGGDNL----A-----AN----F--SRELADYIIYIIDVSGGDKI--PR---KGGPGITQADLLVINKTD 130 (178)
Q Consensus 71 ~~~~d~iiiEttG~~~----~-----~~----~--~~~~ad~~I~VvD~~~~~~~--~~---~~~~qi~~adiiviNK~D 130 (178)
..+..+||..|.|+.. . .. . ....+|.+++|+|++..... +. .....-..+-++|+||+|
T Consensus 117 s~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid 196 (379)
T KOG1423|consen 117 SGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKID 196 (379)
T ss_pred cCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchh
Confidence 5578899999999511 0 00 0 11247999999999852211 10 001112346799999999
Q ss_pred CCCch-----------hHhHHHHHHHHHhcCCC----------------CCEEEEecccCCCHHHHHHHHhhhh
Q 030407 131 LASAI-----------GADLAVMERDALRMRDG----------------GPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 131 l~~~~-----------~~~~~~~~~~l~~~np~----------------a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
..... +.++....-.+++.... -++|++||++|+||+++.++|..++
T Consensus 197 ~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 197 KLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred cchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 86441 01222222233333322 3599999999999999999998775
No 195
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.16 E-value=2.7e-06 Score=67.50 Aligned_cols=102 Identities=11% Similarity=0.048 Sum_probs=63.8
Q ss_pred CCCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---CCCC-----CCCceeEEEEecCCCCCch----
Q 030407 72 FKADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---KGGP-----GITQADLLVINKTDLASAI---- 135 (178)
Q Consensus 72 ~~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~-----qi~~adiiviNK~Dl~~~~---- 135 (178)
..+.+-|++|+|.. +.+.+. ..+|++++|+|.++...... .+.. .-..+-++|.||+||.+..
T Consensus 47 ~~v~L~iwDt~G~e~~~~l~~~~~-~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~ 125 (222)
T cd04173 47 RRIELNMWDTSGSSYYDNVRPLAY-PDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLR 125 (222)
T ss_pred EEEEEEEEeCCCcHHHHHHhHHhc-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhh
Confidence 35778899999942 222222 36799999999987643211 1111 0134579999999996421
Q ss_pred --------hHhHHHHHHHHHhcCCCCCEEEEecccCCC-HHHHHHHHhh
Q 030407 136 --------GADLAVMERDALRMRDGGPFIFAQVGWVIG-IIFTLSITHY 175 (178)
Q Consensus 136 --------~~~~~~~~~~l~~~np~a~i~~~SA~~g~g-i~el~~~l~~ 175 (178)
+...++..++.++. ...+++++||+++++ |+++|+....
T Consensus 126 ~~~~~~~~pIs~e~g~~~ak~~-~~~~y~E~SAk~~~~~V~~~F~~~~~ 173 (222)
T cd04173 126 ELSKQRLIPVTHEQGTVLAKQV-GAVSYVECSSRSSERSVRDVFHVATV 173 (222)
T ss_pred hhhhccCCccCHHHHHHHHHHc-CCCEEEEcCCCcCCcCHHHHHHHHHH
Confidence 01122333344433 234899999999995 9999987654
No 196
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=7.9e-06 Score=63.62 Aligned_cols=98 Identities=16% Similarity=0.130 Sum_probs=64.5
Q ss_pred CCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhHH
Q 030407 74 ADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 74 ~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
.-.=++.|.|-. +...|+ ..|+++++|+|.++...... ++.+- ...-++|.||+|+..+.....+
T Consensus 61 i~lQiWDtaGQerf~ti~~sYy-rgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~-~v~~~LvGNK~D~~~~R~V~~e 138 (207)
T KOG0078|consen 61 IKLQIWDTAGQERFRTITTAYY-RGAMGILLVYDITNEKSFENIRNWIKNIDEHASD-DVVKILVGNKCDLEEKRQVSKE 138 (207)
T ss_pred EEEEEEEcccchhHHHHHHHHH-hhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCC-CCcEEEeeccccccccccccHH
Confidence 445567788831 122233 36899999999987533211 11110 2234999999999874223445
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
+-++..++. +.++++||||+|.+|+|.|-.|.+
T Consensus 139 ~ge~lA~e~--G~~F~EtSAk~~~NI~eaF~~La~ 171 (207)
T KOG0078|consen 139 RGEALAREY--GIKFFETSAKTNFNIEEAFLSLAR 171 (207)
T ss_pred HHHHHHHHh--CCeEEEccccCCCCHHHHHHHHHH
Confidence 556666655 789999999999999999977654
No 197
>PRK01889 GTPase RsgA; Reviewed
Probab=98.15 E-value=8.8e-06 Score=68.88 Aligned_cols=76 Identities=12% Similarity=0.066 Sum_probs=50.7
Q ss_pred cceEEEEEeCCCCCCCC--cCCC---CCCCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHH
Q 030407 95 ADYIIYIIDVSGGDKIP--RKGG---PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFT 169 (178)
Q Consensus 95 ad~~I~VvD~~~~~~~~--~~~~---~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el 169 (178)
.|.+++|+++....... +++. ......-+||+||+||+++ .+ ...++++..+++.+++.+|+++|.|+++|
T Consensus 113 vD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~--~~--~~~~~~~~~~~g~~Vi~vSa~~g~gl~~L 188 (356)
T PRK01889 113 VDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED--AE--EKIAEVEALAPGVPVLAVSALDGEGLDVL 188 (356)
T ss_pred CCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC--HH--HHHHHHHHhCCCCcEEEEECCCCccHHHH
Confidence 47788888885322210 1111 1122345999999999876 22 22344455567789999999999999999
Q ss_pred HHHHh
Q 030407 170 LSITH 174 (178)
Q Consensus 170 ~~~l~ 174 (178)
.+++.
T Consensus 189 ~~~L~ 193 (356)
T PRK01889 189 AAWLS 193 (356)
T ss_pred HHHhh
Confidence 99885
No 198
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.13 E-value=6.7e-06 Score=72.27 Aligned_cols=100 Identities=18% Similarity=0.189 Sum_probs=64.0
Q ss_pred CCEEEEeCCcch--------hhhcccc--cccceEEEEEeCCCCC---CCC----------cCCCC----------CCCc
Q 030407 74 ADLLLCESGGDN--------LAANFSR--ELADYIIYIIDVSGGD---KIP----------RKGGP----------GITQ 120 (178)
Q Consensus 74 ~d~iiiEttG~~--------~~~~~~~--~~ad~~I~VvD~~~~~---~~~----------~~~~~----------qi~~ 120 (178)
..+.|+.+.|+. +...|.. ..++.+++|+|++... +.. ..+.. ....
T Consensus 206 ~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~k 285 (500)
T PRK12296 206 TRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAER 285 (500)
T ss_pred eEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCC
Confidence 467889999941 1111221 2368999999997532 100 01111 1245
Q ss_pred eeEEEEecCCCCCchhHhH-HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 121 ADLLVINKTDLASAIGADL-AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 121 adiiviNK~Dl~~~~~~~~-~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
+-+||+||+|+.+. .++ +.+...++.. ..+++++||++++|+++|+++|.+.+
T Consensus 286 P~IVVlNKiDL~da--~el~e~l~~~l~~~--g~~Vf~ISA~tgeGLdEL~~~L~ell 339 (500)
T PRK12296 286 PRLVVLNKIDVPDA--RELAEFVRPELEAR--GWPVFEVSAASREGLRELSFALAELV 339 (500)
T ss_pred CEEEEEECccchhh--HHHHHHHHHHHHHc--CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999765 333 3334444433 35899999999999999999887654
No 199
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.13 E-value=1.3e-05 Score=71.98 Aligned_cols=101 Identities=19% Similarity=0.085 Sum_probs=61.8
Q ss_pred CCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCchh---------
Q 030407 74 ADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIG--------- 136 (178)
Q Consensus 74 ~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~~--------- 136 (178)
+.+.|+.|.|.. +...+. ..+|.+++|+|++++...+.. .......+-++++||+|+.+...
T Consensus 69 ~~l~~iDTpG~e~f~~l~~~~~-~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e 147 (590)
T TIGR00491 69 PGLLFIDTPGHEAFTNLRKRGG-ALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFME 147 (590)
T ss_pred CcEEEEECCCcHhHHHHHHHHH-hhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHH
Confidence 348999999931 111121 357999999999876432211 01112345799999999974200
Q ss_pred ---HhHHHHH-----------HHHH-------------hcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 137 ---ADLAVME-----------RDAL-------------RMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 137 ---~~~~~~~-----------~~l~-------------~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
.+.+.+. ..+. +.....+++++||++|+|+++|++++..
T Consensus 148 ~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 148 SFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 0000010 1111 2334579999999999999999998753
No 200
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.13 E-value=1.5e-05 Score=64.83 Aligned_cols=112 Identities=13% Similarity=0.059 Sum_probs=66.7
Q ss_pred hHHHhhHhhC--CCCEEEEeCCcchhhhcccc-------------cccceEEEEEeCCCCCCCCcCCCCC---------C
Q 030407 63 GPLEELSNLF--KADLLLCESGGDNLAANFSR-------------ELADYIIYIIDVSGGDKIPRKGGPG---------I 118 (178)
Q Consensus 63 ~~l~~l~~~~--~~d~iiiEttG~~~~~~~~~-------------~~ad~~I~VvD~~~~~~~~~~~~~q---------i 118 (178)
..+.++.++. .+||++|.|.| ....|.+ ...-.+++|+|..+..........+ -
T Consensus 103 dqv~~~iek~~~~~~~~liDTPG--QIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilykt 180 (366)
T KOG1532|consen 103 DQVIELIEKRAEEFDYVLIDTPG--QIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKT 180 (366)
T ss_pred HHHHHHHHHhhcccCEEEEcCCC--ceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhc
Confidence 4444444433 58999999999 3222221 1124578999986643221111111 2
Q ss_pred CceeEEEEecCCCCCch--hHhH---HHHHHHHHh-------------------cCCCCCEEEEecccCCCHHHHHHHHh
Q 030407 119 TQADLLVINKTDLASAI--GADL---AVMERDALR-------------------MRDGGPFIFAQVGWVIGIIFTLSITH 174 (178)
Q Consensus 119 ~~adiiviNK~Dl~~~~--~~~~---~~~~~~l~~-------------------~np~a~i~~~SA~~g~gi~el~~~l~ 174 (178)
+.+-+++.||+|+.+.. .+.. +.+++.+.+ -....+.+-+|+.+|+|.+++|..+.
T Consensus 181 klp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~ 260 (366)
T KOG1532|consen 181 KLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVD 260 (366)
T ss_pred cCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHH
Confidence 34569999999998762 1111 223333332 11235889999999999999999876
Q ss_pred hh
Q 030407 175 YI 176 (178)
Q Consensus 175 ~~ 176 (178)
+-
T Consensus 261 ~~ 262 (366)
T KOG1532|consen 261 ES 262 (366)
T ss_pred HH
Confidence 53
No 201
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.11 E-value=6e-06 Score=60.56 Aligned_cols=68 Identities=13% Similarity=0.086 Sum_probs=46.6
Q ss_pred ccceEEEEEeCCCCCCCCc-C---CCCCC--CceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCC
Q 030407 94 LADYIIYIIDVSGGDKIPR-K---GGPGI--TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIG 165 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~-~---~~~qi--~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~g 165 (178)
.+|.+++|+|+..+..... . +.... ..+-++|+||+|+.++ .+.....+.+++.. .+++++||++|.+
T Consensus 11 ~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~--~~~~~~~~~~~~~~--~~ii~iSa~~~~~ 84 (141)
T cd01857 11 RSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTE--EQRKAWAEYFKKEG--IVVVFFSALKENA 84 (141)
T ss_pred hCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCH--HHHHHHHHHHHhcC--CeEEEEEecCCCc
Confidence 4699999999987654322 1 11111 4467999999999876 55555556665443 5899999998875
No 202
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=1.3e-05 Score=61.92 Aligned_cols=99 Identities=16% Similarity=0.126 Sum_probs=63.6
Q ss_pred CCEEEEeCCcc----hhhhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhHH
Q 030407 74 ADLLLCESGGD----NLAANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 74 ~d~iiiEttG~----~~~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
..+=+.+|.|- ++...+++ .++++|+|+|.+....... ++.. -...-++|.||+|+.+......+
T Consensus 58 iKlQIWDTAGQERFrtit~syYR-~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~~~v~~~ 135 (205)
T KOG0084|consen 58 IKLQIWDTAGQERFRTITSSYYR-GAHGIIFVYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEKRVVSTE 135 (205)
T ss_pred EEEEeeeccccHHHhhhhHhhcc-CCCeEEEEEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhheecCHH
Confidence 45567789994 23344554 6899999999987443211 1110 11246999999999765212223
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
..++...+ ++-.++++||||++.++++.|..+..
T Consensus 136 ~a~~fa~~-~~~~~f~ETSAK~~~NVe~~F~~la~ 169 (205)
T KOG0084|consen 136 EAQEFADE-LGIPIFLETSAKDSTNVEDAFLTLAK 169 (205)
T ss_pred HHHHHHHh-cCCcceeecccCCccCHHHHHHHHHH
Confidence 33444433 33334999999999999999987654
No 203
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.10 E-value=9e-06 Score=69.92 Aligned_cols=96 Identities=15% Similarity=0.134 Sum_probs=57.7
Q ss_pred CCCEEEEeCCcch-h-hhc-ccccccceEEEEEeCCCCCCCCcC----CCCCCCc-eeEEEEecCCCCCchhHhHHHHHH
Q 030407 73 KADLLLCESGGDN-L-AAN-FSRELADYIIYIIDVSGGDKIPRK----GGPGITQ-ADLLVINKTDLASAIGADLAVMER 144 (178)
Q Consensus 73 ~~d~iiiEttG~~-~-~~~-~~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~-adiiviNK~Dl~~~~~~~~~~~~~ 144 (178)
+..+.||.|.|-. . ..+ .....+|.+++|+|+..+...+.. ....+.. .-++++||+|+.+...+..+.+.+
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~ 158 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKK 158 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHH
Confidence 4578999999931 1 111 112246999999999877543221 0111222 246799999998642122333333
Q ss_pred HH----HhcC-CCCCEEEEecccCCCHHH
Q 030407 145 DA----LRMR-DGGPFIFAQVGWVIGIIF 168 (178)
Q Consensus 145 ~l----~~~n-p~a~i~~~SA~~g~gi~e 168 (178)
.+ +... ...+++++||++|+|+++
T Consensus 159 ~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 159 DYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 33 3222 246899999999999986
No 204
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.10 E-value=1.1e-05 Score=69.68 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=57.8
Q ss_pred CCCEEEEeCCcch-hh-hcc-cccccceEEEEEeCCCCCCC---Cc-C---CCCCCCc-eeEEEEecCCCCCchhHhH--
Q 030407 73 KADLLLCESGGDN-LA-ANF-SRELADYIIYIIDVSGGDKI---PR-K---GGPGITQ-ADLLVINKTDLASAIGADL-- 139 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~-~~~-~~~~ad~~I~VvD~~~~~~~---~~-~---~~~qi~~-adiiviNK~Dl~~~~~~~~-- 139 (178)
++.+.|++|.|.. .. ... ....+|.+++|+|++++... +. . ....+.. .-++++||+|+.+...+..
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~ 163 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEA 163 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHH
Confidence 5678999999931 11 111 11347999999999887321 11 0 0111222 3577999999975311222
Q ss_pred --HHHHHHHHhcC---CCCCEEEEecccCCCHHH
Q 030407 140 --AVMERDALRMR---DGGPFIFAQVGWVIGIIF 168 (178)
Q Consensus 140 --~~~~~~l~~~n---p~a~i~~~SA~~g~gi~e 168 (178)
+++.+.++... ...+++++||++|+|+++
T Consensus 164 ~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 164 IKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 33444444332 236899999999999986
No 205
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.10 E-value=8.6e-06 Score=63.60 Aligned_cols=96 Identities=16% Similarity=0.103 Sum_probs=56.7
Q ss_pred CCCEEEEeCCcch-hh-hcc-cccccceEEEEEeCCCCCCCCcC----CCCCCCce-eEEEEecCCCCCchhHhH----H
Q 030407 73 KADLLLCESGGDN-LA-ANF-SRELADYIIYIIDVSGGDKIPRK----GGPGITQA-DLLVINKTDLASAIGADL----A 140 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~-~~~-~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~a-diiviNK~Dl~~~~~~~~----~ 140 (178)
+..+.|+.|.|.. .. ... ....+|.+++|+|++.+...... ........ -++|+||+|+.+...+.. .
T Consensus 76 ~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 76 KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHH
Confidence 5678999999931 11 111 11246999999999876422110 11112222 356899999975311222 2
Q ss_pred HHHHHHHhcC-CCCCEEEEecccCCCHHH
Q 030407 141 VMERDALRMR-DGGPFIFAQVGWVIGIIF 168 (178)
Q Consensus 141 ~~~~~l~~~n-p~a~i~~~SA~~g~gi~e 168 (178)
.+.+.++.++ +..+++++||++|.|+++
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 3333334443 346799999999999975
No 206
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.09 E-value=3.4e-06 Score=69.30 Aligned_cols=77 Identities=13% Similarity=0.060 Sum_probs=50.9
Q ss_pred cceEEEEEeCCCCC-CCC--cCCC---CCCCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHH
Q 030407 95 ADYIIYIIDVSGGD-KIP--RKGG---PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIF 168 (178)
Q Consensus 95 ad~~I~VvD~~~~~-~~~--~~~~---~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~e 168 (178)
+|.+++|+|+..+. ... +++. ......-++|+||+||.++ .+......... ..+.+++.+||++|.|+++
T Consensus 79 vD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~--~~~~~~~~~~~--~~g~~v~~vSA~~g~gi~~ 154 (287)
T cd01854 79 VDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDD--EEEELELVEAL--ALGYPVLAVSAKTGEGLDE 154 (287)
T ss_pred CCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCCh--HHHHHHHHHHH--hCCCeEEEEECCCCccHHH
Confidence 58899999997764 211 1111 1123346999999999866 33222222222 2457999999999999999
Q ss_pred HHHHHhh
Q 030407 169 TLSITHY 175 (178)
Q Consensus 169 l~~~l~~ 175 (178)
|++.+..
T Consensus 155 L~~~L~~ 161 (287)
T cd01854 155 LREYLKG 161 (287)
T ss_pred HHhhhcc
Confidence 9988753
No 207
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.09 E-value=8.9e-06 Score=71.33 Aligned_cols=97 Identities=14% Similarity=0.145 Sum_probs=59.3
Q ss_pred CCCEEEEeCCcch-hh-hcc-cccccceEEEEEeCCCCCCCCcC-C---CCCCC-ceeEEEEecCCCCCchhHhHHHHHH
Q 030407 73 KADLLLCESGGDN-LA-ANF-SRELADYIIYIIDVSGGDKIPRK-G---GPGIT-QADLLVINKTDLASAIGADLAVMER 144 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~-~~~-~~~~ad~~I~VvD~~~~~~~~~~-~---~~qi~-~adiiviNK~Dl~~~~~~~~~~~~~ 144 (178)
+..++||.|.|-. .. ... ....+|.+++|+|+..+...+.. + ...+. ..-++++||+|+.+...+..+.+.+
T Consensus 106 ~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~~ 185 (474)
T PRK05124 106 KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFERIRE 185 (474)
T ss_pred CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHHHHHH
Confidence 5678999999921 10 111 11346999999999876533211 0 01111 2357899999998542133444444
Q ss_pred HHH----hc--CCCCCEEEEecccCCCHHHH
Q 030407 145 DAL----RM--RDGGPFIFAQVGWVIGIIFT 169 (178)
Q Consensus 145 ~l~----~~--np~a~i~~~SA~~g~gi~el 169 (178)
.++ .. .+..+++++||++|+|++++
T Consensus 186 ~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 186 DYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 443 22 24689999999999999763
No 208
>PRK11058 GTPase HflX; Provisional
Probab=98.08 E-value=1.8e-05 Score=68.56 Aligned_cols=96 Identities=17% Similarity=0.155 Sum_probs=59.1
Q ss_pred CEEEEeCCcc-h-----hhhccc-----ccccceEEEEEeCCCCCCCCc-----CCC---CCCCceeEEEEecCCCCCch
Q 030407 75 DLLLCESGGD-N-----LAANFS-----RELADYIIYIIDVSGGDKIPR-----KGG---PGITQADLLVINKTDLASAI 135 (178)
Q Consensus 75 d~iiiEttG~-~-----~~~~~~-----~~~ad~~I~VvD~~~~~~~~~-----~~~---~qi~~adiiviNK~Dl~~~~ 135 (178)
.++++.|+|. . +...|. ...+|.+++|+|++++..... ... ..-..+.++|+||+|+.+.
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~- 324 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDD- 324 (426)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCc-
Confidence 6789999994 1 011121 124799999999987642111 000 1113467999999999754
Q ss_pred hHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 136 GADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 136 ~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.. ..... ...+ ...++.+||++|+|+++|++++...
T Consensus 325 -~~-~~~~~--~~~~-~~~~v~ISAktG~GIdeL~e~I~~~ 360 (426)
T PRK11058 325 -FE-PRIDR--DEEN-KPIRVWLSAQTGAGIPLLFQALTER 360 (426)
T ss_pred -hh-HHHHH--HhcC-CCceEEEeCCCCCCHHHHHHHHHHH
Confidence 22 11111 1111 1235889999999999999988654
No 209
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.07 E-value=1.1e-05 Score=69.61 Aligned_cols=96 Identities=13% Similarity=0.073 Sum_probs=56.8
Q ss_pred CCCEEEEeCCcch-hhh-ccc-ccccceEEEEEeCCC--CCCCCc-CC---CCCCCc-eeEEEEecCCCCCchhHhH---
Q 030407 73 KADLLLCESGGDN-LAA-NFS-RELADYIIYIIDVSG--GDKIPR-KG---GPGITQ-ADLLVINKTDLASAIGADL--- 139 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~~-~~~-~~~ad~~I~VvD~~~--~~~~~~-~~---~~qi~~-adiiviNK~Dl~~~~~~~~--- 139 (178)
++.+.|+.|.|.. ... ... ...+|.+++|+|+.+ +..... .+ ...+.. .-++++||+|+.+...+..
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~ 162 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEV 162 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHH
Confidence 5788999999931 111 111 124699999999986 322111 00 011222 3578999999986311222
Q ss_pred -HHHHHHHHhcC--C-CCCEEEEecccCCCHHH
Q 030407 140 -AVMERDALRMR--D-GGPFIFAQVGWVIGIIF 168 (178)
Q Consensus 140 -~~~~~~l~~~n--p-~a~i~~~SA~~g~gi~e 168 (178)
+++.+.++... + ..+++++||++|+|+++
T Consensus 163 ~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 163 KEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred HHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 33444443332 1 36899999999999987
No 210
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.06 E-value=6.7e-06 Score=69.67 Aligned_cols=81 Identities=19% Similarity=0.076 Sum_probs=51.6
Q ss_pred ccceEEEEEeCCCCCCCCcC-CCCCC-CceeEEEEecCCCCCchhHhHHHHHHHH----HhcC-CCCCEEEEecccCCCH
Q 030407 94 LADYIIYIIDVSGGDKIPRK-GGPGI-TQADLLVINKTDLASAIGADLAVMERDA----LRMR-DGGPFIFAQVGWVIGI 166 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~~-~~~qi-~~adiiviNK~Dl~~~~~~~~~~~~~~l----~~~n-p~a~i~~~SA~~g~gi 166 (178)
.++.++.|+|+.+....... ....+ ...-++|+||+||.+.. ...+.+.+++ ++.+ +...++.+||++|.|+
T Consensus 63 ~~~~Il~VvD~~d~~~s~~~~l~~~~~~~piilV~NK~DLl~k~-~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv 141 (360)
T TIGR03597 63 SNALIVYVVDIFDFEGSLIPELKRFVGGNPVLLVGNKIDLLPKS-VNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGI 141 (360)
T ss_pred CCcEEEEEEECcCCCCCccHHHHHHhCCCCEEEEEEchhhCCCC-CCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCH
Confidence 46899999998665422110 00001 33568999999998651 2233444443 3322 1136999999999999
Q ss_pred HHHHHHHhh
Q 030407 167 IFTLSITHY 175 (178)
Q Consensus 167 ~el~~~l~~ 175 (178)
+++++.+.+
T Consensus 142 ~eL~~~l~~ 150 (360)
T TIGR03597 142 DELLDKIKK 150 (360)
T ss_pred HHHHHHHHH
Confidence 999999865
No 211
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=1.2e-05 Score=68.76 Aligned_cols=103 Identities=11% Similarity=0.034 Sum_probs=69.9
Q ss_pred CCCEEEEeCCcch--hhhc-ccccccceEEEEEeCCCCCCCCcC-C---CCCCCcee-EEEEecCCCCCchhHhHHHHHH
Q 030407 73 KADLLLCESGGDN--LAAN-FSRELADYIIYIIDVSGGDKIPRK-G---GPGITQAD-LLVINKTDLASAIGADLAVMER 144 (178)
Q Consensus 73 ~~d~iiiEttG~~--~~~~-~~~~~ad~~I~VvD~~~~~~~~~~-~---~~qi~~ad-iiviNK~Dl~~~~~~~~~~~~~ 144 (178)
+.-.-|||++|-. +... ......|..++|||+.+|...+.. + ...+.... +||+||+|++++ +.+++..+
T Consensus 49 d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~--~r~e~~i~ 126 (447)
T COG3276 49 DGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE--ARIEQKIK 126 (447)
T ss_pred CCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccH--HHHHHHHH
Confidence 3467789999921 1111 111245899999999877654321 1 11233333 999999999988 66666555
Q ss_pred HHHhc--CCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 145 DALRM--RDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 145 ~l~~~--np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
.+.+- .+.++++.+|+++|+||++|.+.|..+.
T Consensus 127 ~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 127 QILADLSLANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred HHHhhcccccccccccccccCCCHHHHHHHHHHhh
Confidence 55432 3578999999999999999999887653
No 212
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.05 E-value=7.6e-06 Score=71.64 Aligned_cols=98 Identities=15% Similarity=0.104 Sum_probs=60.7
Q ss_pred CCCEEEEeCCcch-----hhh------cccccccceEEEEEeCCCCCCCCcC-CC---CCCCceeEEEEecCCCCCchhH
Q 030407 73 KADLLLCESGGDN-----LAA------NFSRELADYIIYIIDVSGGDKIPRK-GG---PGITQADLLVINKTDLASAIGA 137 (178)
Q Consensus 73 ~~d~iiiEttG~~-----~~~------~~~~~~ad~~I~VvD~~~~~~~~~~-~~---~qi~~adiiviNK~Dl~~~~~~ 137 (178)
+..+.+++|.|.. +.. ......+|++++|+|++.+...... .. .....+-++|+||+|+... .
T Consensus 85 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~--~ 162 (472)
T PRK03003 85 GRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERG--E 162 (472)
T ss_pred CcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCcc--c
Confidence 4568899999942 100 0112247999999999876432211 11 1124578999999999654 2
Q ss_pred hHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 138 DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 138 ~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
. +. .+.. .. .....+++||++|.|++++++++.+.
T Consensus 163 ~-~~-~~~~-~~-g~~~~~~iSA~~g~gi~eL~~~i~~~ 197 (472)
T PRK03003 163 A-DA-AALW-SL-GLGEPHPVSALHGRGVGDLLDAVLAA 197 (472)
T ss_pred h-hh-HHHH-hc-CCCCeEEEEcCCCCCcHHHHHHHHhh
Confidence 1 11 1111 12 12245799999999999999987653
No 213
>PRK00098 GTPase RsgA; Reviewed
Probab=98.04 E-value=8.2e-06 Score=67.40 Aligned_cols=77 Identities=12% Similarity=0.008 Sum_probs=51.0
Q ss_pred cceEEEEEeCCCCCCCCc---CCC---CCCCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHH
Q 030407 95 ADYIIYIIDVSGGDKIPR---KGG---PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIF 168 (178)
Q Consensus 95 ad~~I~VvD~~~~~~~~~---~~~---~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~e 168 (178)
+|.+++|+|+.++..... ++. ......-++|+||+||.+.. ...+...+..+.. +.+++++||++|+|+++
T Consensus 81 iD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~-~~~~~~~~~~~~~--g~~v~~vSA~~g~gi~~ 157 (298)
T PRK00098 81 VDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDL-EEARELLALYRAI--GYDVLELSAKEGEGLDE 157 (298)
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCH-HHHHHHHHHHHHC--CCeEEEEeCCCCccHHH
Confidence 588999999976532211 111 11234569999999997441 3333344444433 35899999999999999
Q ss_pred HHHHHh
Q 030407 169 TLSITH 174 (178)
Q Consensus 169 l~~~l~ 174 (178)
|++.+.
T Consensus 158 L~~~l~ 163 (298)
T PRK00098 158 LKPLLA 163 (298)
T ss_pred HHhhcc
Confidence 998875
No 214
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.03 E-value=2.5e-05 Score=59.85 Aligned_cols=102 Identities=14% Similarity=0.100 Sum_probs=69.6
Q ss_pred CCEEEEeCCcc----hhhhcccccccceEEEEEeCCCCCCCCc------CC-----CCC-CCceeEEEEecCCCCCc--h
Q 030407 74 ADLLLCESGGD----NLAANFSRELADYIIYIIDVSGGDKIPR------KG-----GPG-ITQADLLVINKTDLASA--I 135 (178)
Q Consensus 74 ~d~iiiEttG~----~~~~~~~~~~ad~~I~VvD~~~~~~~~~------~~-----~~q-i~~adiiviNK~Dl~~~--~ 135 (178)
+-.-+..|.|. ++..+|++ ++|.++.++|+........ ++ +.. -.++=+|+.||+|+... .
T Consensus 58 vtlQiWDTAGQERFqsLg~aFYR-gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r 136 (210)
T KOG0394|consen 58 VTLQIWDTAGQERFQSLGVAFYR-GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSR 136 (210)
T ss_pred EEEEEEecccHHHhhhcccceec-CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccc
Confidence 45667888883 23334444 7899999999976543211 11 111 24566999999999652 1
Q ss_pred hHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 136 GADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 136 ~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
-...++.++|.++ +...|+|+||||.+.++++-|+.+.+.|
T Consensus 137 ~VS~~~Aq~WC~s-~gnipyfEtSAK~~~NV~~AFe~ia~~a 177 (210)
T KOG0394|consen 137 QVSEKKAQTWCKS-KGNIPYFETSAKEATNVDEAFEEIARRA 177 (210)
T ss_pred eeeHHHHHHHHHh-cCCceeEEecccccccHHHHHHHHHHHH
Confidence 1334567777776 4578999999999999999999876654
No 215
>PRK12288 GTPase RsgA; Reviewed
Probab=98.03 E-value=1.8e-05 Score=66.85 Aligned_cols=79 Identities=15% Similarity=0.038 Sum_probs=49.1
Q ss_pred cceEEEEEeCCCCCCCC--cCC---CCCCCceeEEEEecCCCCCchhHhHHHHHHHHHhc-CCCCCEEEEecccCCCHHH
Q 030407 95 ADYIIYIIDVSGGDKIP--RKG---GPGITQADLLVINKTDLASAIGADLAVMERDALRM-RDGGPFIFAQVGWVIGIIF 168 (178)
Q Consensus 95 ad~~I~VvD~~~~~~~~--~~~---~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~-np~a~i~~~SA~~g~gi~e 168 (178)
.|.+++|.+........ ..+ .......-++|+||+||.++ .+.+.+.++.+.. ..+.+++.+||++|+|+++
T Consensus 121 vD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~--~~~~~~~~~~~~y~~~g~~v~~vSA~tg~Gide 198 (347)
T PRK12288 121 IDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDD--EGRAFVNEQLDIYRNIGYRVLMVSSHTGEGLEE 198 (347)
T ss_pred ccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCc--HHHHHHHHHHHHHHhCCCeEEEEeCCCCcCHHH
Confidence 47777777764322111 111 11223456999999999876 4333333332221 2346999999999999999
Q ss_pred HHHHHhh
Q 030407 169 TLSITHY 175 (178)
Q Consensus 169 l~~~l~~ 175 (178)
|++.+..
T Consensus 199 L~~~L~~ 205 (347)
T PRK12288 199 LEAALTG 205 (347)
T ss_pred HHHHHhh
Confidence 9998864
No 216
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.03 E-value=1.3e-05 Score=61.29 Aligned_cols=103 Identities=17% Similarity=0.051 Sum_probs=62.0
Q ss_pred CCCEEEEeCCcchhh---hcccccccceEEEEEeCCCCCCCCc---CCCC-----CCCceeEEEEecCCCCCchh-----
Q 030407 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR---KGGP-----GITQADLLVINKTDLASAIG----- 136 (178)
Q Consensus 73 ~~d~iiiEttG~~~~---~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~-----qi~~adiiviNK~Dl~~~~~----- 136 (178)
..++.++++.|..-. .+.....++.++.++|.+....... .+.. .-..+-++|.||+|+.+...
T Consensus 48 ~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~ 127 (187)
T cd04129 48 PVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEY 127 (187)
T ss_pred EEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCccccccc
Confidence 356778899993211 1112234688999999876432211 0100 01356799999999854200
Q ss_pred -----HhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 137 -----ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 137 -----~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+......++. ...+++++||++|+|++++|+.+.+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~~f~~l~~~ 171 (187)
T cd04129 128 RTQRFVPIQQGKRVAKEI-GAKKYMECSALTGEGVDDVFEAATRA 171 (187)
T ss_pred ccCCcCCHHHHHHHHHHh-CCcEEEEccCCCCCCHHHHHHHHHHH
Confidence 1112333333333 22479999999999999999998754
No 217
>PRK12736 elongation factor Tu; Reviewed
Probab=97.99 E-value=3.2e-05 Score=66.23 Aligned_cols=102 Identities=14% Similarity=0.123 Sum_probs=63.0
Q ss_pred CCCEEEEeCCcch--hhhccc-ccccceEEEEEeCCCCCCCCc-CCC---CCCCce-eEEEEecCCCCCchhHhH-----
Q 030407 73 KADLLLCESGGDN--LAANFS-RELADYIIYIIDVSGGDKIPR-KGG---PGITQA-DLLVINKTDLASAIGADL----- 139 (178)
Q Consensus 73 ~~d~iiiEttG~~--~~~~~~-~~~ad~~I~VvD~~~~~~~~~-~~~---~qi~~a-diiviNK~Dl~~~~~~~~----- 139 (178)
+..+.||.|.|-. +..+.. ...+|.+++|+|+..+...+. .+. .....+ -++++||+|++++ ++.
T Consensus 74 ~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~--~~~~~~i~ 151 (394)
T PRK12736 74 KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDD--EELLELVE 151 (394)
T ss_pred CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcch--HHHHHHHH
Confidence 4578999999921 111111 124699999999987643221 111 112344 3678999999854 222
Q ss_pred HHHHHHHHhcC---CCCCEEEEecccCC--------CHHHHHHHHhhh
Q 030407 140 AVMERDALRMR---DGGPFIFAQVGWVI--------GIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~n---p~a~i~~~SA~~g~--------gi~el~~~l~~~ 176 (178)
+++.+.++... ...+++++||++|. ++++|++.+.+.
T Consensus 152 ~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~ 199 (394)
T PRK12736 152 MEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEY 199 (394)
T ss_pred HHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHh
Confidence 23444444443 24699999999983 688888887654
No 218
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=97.98 E-value=2.6e-07 Score=69.41 Aligned_cols=95 Identities=21% Similarity=0.185 Sum_probs=57.6
Q ss_pred CCCEEEEeCCcc-hhh---------hccc-ccccceEEEEEeCCCCCCCCcCCCC---CCCceeEEEEecCCCCCchhH-
Q 030407 73 KADLLLCESGGD-NLA---------ANFS-RELADYIIYIIDVSGGDKIPRKGGP---GITQADLLVINKTDLASAIGA- 137 (178)
Q Consensus 73 ~~d~iiiEttG~-~~~---------~~~~-~~~ad~~I~VvD~~~~~~~~~~~~~---qi~~adiiviNK~Dl~~~~~~- 137 (178)
+..+.||.+.|. ++. ..+. ....|.++.|+|+++..... .... .+..+-++++||+|++.....
T Consensus 46 ~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l-~l~~ql~e~g~P~vvvlN~~D~a~~~g~~ 124 (156)
T PF02421_consen 46 DQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLERNL-YLTLQLLELGIPVVVVLNKMDEAERKGIE 124 (156)
T ss_dssp TEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHHH-HHHHHHHHTTSSEEEEEETHHHHHHTTEE
T ss_pred CceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHHH-HHHHHHHHcCCCEEEEEeCHHHHHHcCCE
Confidence 467888888884 111 1111 12359999999998743211 1111 245678999999999865211
Q ss_pred -hHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHH
Q 030407 138 -DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 173 (178)
Q Consensus 138 -~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l 173 (178)
..+.+.+.+ +.|++++||++|+|+++|++.|
T Consensus 125 id~~~Ls~~L-----g~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 125 IDAEKLSERL-----GVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp E-HHHHHHHH-----TS-EEEEBTTTTBTHHHHHHHH
T ss_pred ECHHHHHHHh-----CCCEEEEEeCCCcCHHHHHhhC
Confidence 223444433 4689999999999999999875
No 219
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.98 E-value=2e-05 Score=67.79 Aligned_cols=98 Identities=19% Similarity=0.144 Sum_probs=65.3
Q ss_pred CCCEEEEeCCcchhhh--cc----------cccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCchh
Q 030407 73 KADLLLCESGGDNLAA--NF----------SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIG 136 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~--~~----------~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~~ 136 (178)
+..+.+|.|-|.-... .+ ....||.+++|||+..|....+. +......+.++|+||+|-...
T Consensus 50 ~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~-- 127 (444)
T COG1160 50 GREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKA-- 127 (444)
T ss_pred CceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchh--
Confidence 4568888888842111 11 12347999999999887654331 112344678999999997643
Q ss_pred HhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 137 ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 137 ~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+ +...++.. + ...+++++||.+|.|+.+|++.+.+.
T Consensus 128 e--~~~~efys-l-G~g~~~~ISA~Hg~Gi~dLld~v~~~ 163 (444)
T COG1160 128 E--ELAYEFYS-L-GFGEPVPISAEHGRGIGDLLDAVLEL 163 (444)
T ss_pred h--hhHHHHHh-c-CCCCceEeehhhccCHHHHHHHHHhh
Confidence 2 22222332 2 35689999999999999999987664
No 220
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=3.4e-05 Score=67.85 Aligned_cols=99 Identities=15% Similarity=0.145 Sum_probs=65.9
Q ss_pred CCEEEEeCCcchhhhcc---cc--cccceEEEEEeCCCCCCCCc----CCCCCCCceeEEEEecCCCCCchhHhHHHHHH
Q 030407 74 ADLLLCESGGDNLAANF---SR--ELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGADLAVMER 144 (178)
Q Consensus 74 ~d~iiiEttG~~~~~~~---~~--~~ad~~I~VvD~~~~~~~~~----~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~ 144 (178)
--+-|..|.| .++.. .+ ..+|.+|+||-+.+|...+. ++...-..+-+|.+||+|.... ..+++.+
T Consensus 201 ~~iTFLDTPG--HaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a---~pekv~~ 275 (683)
T KOG1145|consen 201 KSITFLDTPG--HAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGA---NPEKVKR 275 (683)
T ss_pred CEEEEecCCc--HHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCC---CHHHHHH
Confidence 4567777888 22111 11 23589999999887765432 1222223356999999998755 4455554
Q ss_pred HHH-------hcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 145 DAL-------RMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 145 ~l~-------~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
.+- .+....+++++||++|+|++.|.+.+.-+|
T Consensus 276 eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 276 ELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred HHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHH
Confidence 443 334567999999999999999999877654
No 221
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.94 E-value=3.5e-05 Score=69.84 Aligned_cols=96 Identities=16% Similarity=0.151 Sum_probs=57.8
Q ss_pred CCCEEEEeCCcch-hh-hcc-cccccceEEEEEeCCCCCCCCcC----CCCCCC-ceeEEEEecCCCCCchhHhHHHHHH
Q 030407 73 KADLLLCESGGDN-LA-ANF-SRELADYIIYIIDVSGGDKIPRK----GGPGIT-QADLLVINKTDLASAIGADLAVMER 144 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~-~~~-~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~-~adiiviNK~Dl~~~~~~~~~~~~~ 144 (178)
+..++||.|.|.. .. .+. ....+|.+++|+|+..+...+.. ....+. ..-++++||+|+++...+..+.+..
T Consensus 103 ~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~ 182 (632)
T PRK05506 103 KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVA 182 (632)
T ss_pred CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHHH
Confidence 4578999999931 11 111 12346999999999876433211 111122 2347799999998531133344433
Q ss_pred HHH----hc-CCCCCEEEEecccCCCHHH
Q 030407 145 DAL----RM-RDGGPFIFAQVGWVIGIIF 168 (178)
Q Consensus 145 ~l~----~~-np~a~i~~~SA~~g~gi~e 168 (178)
.++ .. .+..+++++||++|+|+++
T Consensus 183 ~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 183 DYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 332 22 2346899999999999874
No 222
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=97.93 E-value=2.5e-05 Score=67.20 Aligned_cols=98 Identities=19% Similarity=0.125 Sum_probs=63.0
Q ss_pred CCCEEEEeCCcchh-----hh-----cc-cccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCchhH
Q 030407 73 KADLLLCESGGDNL-----AA-----NF-SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGA 137 (178)
Q Consensus 73 ~~d~iiiEttG~~~-----~~-----~~-~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~~~ 137 (178)
+..+.+++|.|... .. .. ....+|.+++|+|+..+...... +......+-++|+||+|+.+. .
T Consensus 46 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~--~ 123 (429)
T TIGR03594 46 GREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKE--D 123 (429)
T ss_pred CeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcc--c
Confidence 45689999999411 00 00 11246999999999876433211 111234567999999999765 2
Q ss_pred hHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 138 DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 138 ~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.. .. ...++ ...+++++||++|.|++++++.+.+.
T Consensus 124 ~~--~~-~~~~l-g~~~~~~vSa~~g~gv~~ll~~i~~~ 158 (429)
T TIGR03594 124 AV--AA-EFYSL-GFGEPIPISAEHGRGIGDLLDAILEL 158 (429)
T ss_pred cc--HH-HHHhc-CCCCeEEEeCCcCCChHHHHHHHHHh
Confidence 21 11 12222 34489999999999999999987654
No 223
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=2.1e-05 Score=60.47 Aligned_cols=101 Identities=15% Similarity=0.074 Sum_probs=67.5
Q ss_pred hCCCCEEEEeCCcc----hhhhcccccccceEEEEEeCCCCCCCCc--CCC---CCC---CceeEEEEecCCCCCchhHh
Q 030407 71 LFKADLLLCESGGD----NLAANFSRELADYIIYIIDVSGGDKIPR--KGG---PGI---TQADLLVINKTDLASAIGAD 138 (178)
Q Consensus 71 ~~~~d~iiiEttG~----~~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~---~qi---~~adiiviNK~Dl~~~~~~~ 138 (178)
..+..+=+..|.|. ++...|+. .+.+.++|+|.++.+.... .+. .|- ..--+++.||+||.......
T Consensus 52 ~k~IKlqiwDtaGqe~frsv~~syYr-~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs 130 (216)
T KOG0098|consen 52 GKQIKLQIWDTAGQESFRSVTRSYYR-GAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVS 130 (216)
T ss_pred CceEEEEEEecCCcHHHHHHHHHHhc-cCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcccccc
Confidence 34677788899994 23344444 6789999999987654311 000 111 12247889999998653344
Q ss_pred HHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHh
Q 030407 139 LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 174 (178)
Q Consensus 139 ~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~ 174 (178)
.++-+++.++ .+-..++|||++++|++|.|.-..
T Consensus 131 ~EEGeaFA~e--hgLifmETSakt~~~VEEaF~nta 164 (216)
T KOG0098|consen 131 KEEGEAFARE--HGLIFMETSAKTAENVEEAFINTA 164 (216)
T ss_pred HHHHHHHHHH--cCceeehhhhhhhhhHHHHHHHHH
Confidence 5666777776 355778999999999999987543
No 224
>PRK00049 elongation factor Tu; Reviewed
Probab=97.91 E-value=5.6e-05 Score=64.83 Aligned_cols=103 Identities=13% Similarity=0.129 Sum_probs=63.0
Q ss_pred CCCEEEEeCCcch--hhhcc-cccccceEEEEEeCCCCCCCCc-CC---CCCCCceeE-EEEecCCCCCchhHhHH----
Q 030407 73 KADLLLCESGGDN--LAANF-SRELADYIIYIIDVSGGDKIPR-KG---GPGITQADL-LVINKTDLASAIGADLA---- 140 (178)
Q Consensus 73 ~~d~iiiEttG~~--~~~~~-~~~~ad~~I~VvD~~~~~~~~~-~~---~~qi~~adi-iviNK~Dl~~~~~~~~~---- 140 (178)
+..+.||.|.|.. +.... ....+|.+++|+|+..+...+. .+ ......+-+ +++||+|+++.. +..+
T Consensus 74 ~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~-~~~~~~~~ 152 (396)
T PRK00049 74 KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE-ELLELVEM 152 (396)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchH-HHHHHHHH
Confidence 4578999999931 11111 1134799999999987643321 11 111234555 579999998541 2222
Q ss_pred HHHHHHHhcC---CCCCEEEEecccCC----------CHHHHHHHHhhh
Q 030407 141 VMERDALRMR---DGGPFIFAQVGWVI----------GIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~n---p~a~i~~~SA~~g~----------gi~el~~~l~~~ 176 (178)
++.+.++... ...+++++||++|. |+..|++.|..+
T Consensus 153 ~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 153 EVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred HHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 3444444321 24799999999975 678888888754
No 225
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.90 E-value=3.8e-05 Score=66.29 Aligned_cols=97 Identities=19% Similarity=0.107 Sum_probs=61.7
Q ss_pred CCCEEEEeCCcchh-----h----hcc--cccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCchhH
Q 030407 73 KADLLLCESGGDNL-----A----ANF--SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGA 137 (178)
Q Consensus 73 ~~d~iiiEttG~~~-----~----~~~--~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~~~ 137 (178)
+..+.+++|.|..- . ... ....+|.+++|+|+..+...... +......+-++|+||+|+.+. +
T Consensus 48 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~--~ 125 (435)
T PRK00093 48 GREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDE--E 125 (435)
T ss_pred CcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccc--h
Confidence 47889999999421 0 000 11247999999999875432211 111124567999999997653 2
Q ss_pred hHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 138 DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 138 ~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
. ...+. ..+ ...+++++||++|.|++++++.+.+
T Consensus 126 ~--~~~~~-~~l-g~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 126 A--DAYEF-YSL-GLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred h--hHHHH-Hhc-CCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 1 11222 222 2335799999999999999998764
No 226
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.87 E-value=3.6e-05 Score=70.67 Aligned_cols=98 Identities=16% Similarity=0.055 Sum_probs=61.2
Q ss_pred CCCEEEEeCCcchh-----hhcc------cccccceEEEEEeCCCCCCCCcC-C---CCCCCceeEEEEecCCCCCchhH
Q 030407 73 KADLLLCESGGDNL-----AANF------SRELADYIIYIIDVSGGDKIPRK-G---GPGITQADLLVINKTDLASAIGA 137 (178)
Q Consensus 73 ~~d~iiiEttG~~~-----~~~~------~~~~ad~~I~VvD~~~~~~~~~~-~---~~qi~~adiiviNK~Dl~~~~~~ 137 (178)
+..+.+++|.|... ...+ ....+|.+++|+|++.+...... . ......+-++|+||+|+... .
T Consensus 322 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~--~ 399 (712)
T PRK09518 322 GTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQAS--E 399 (712)
T ss_pred CEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccc--h
Confidence 34678999999421 0001 11347999999999875432211 1 11234577999999998654 2
Q ss_pred hHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 138 DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 138 ~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.. .....+ + .....+++||++|.|++++++.+...
T Consensus 400 ~~--~~~~~~-l-g~~~~~~iSA~~g~GI~eLl~~i~~~ 434 (712)
T PRK09518 400 YD--AAEFWK-L-GLGEPYPISAMHGRGVGDLLDEALDS 434 (712)
T ss_pred hh--HHHHHH-c-CCCCeEEEECCCCCCchHHHHHHHHh
Confidence 21 122222 1 22356899999999999999987654
No 227
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.85 E-value=2.5e-05 Score=64.56 Aligned_cols=78 Identities=18% Similarity=0.173 Sum_probs=50.9
Q ss_pred cceEEEEEeCCCCCCC---Cc---------CCCC-CCCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecc
Q 030407 95 ADYIIYIIDVSGGDKI---PR---------KGGP-GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVG 161 (178)
Q Consensus 95 ad~~I~VvD~~~~~~~---~~---------~~~~-qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~ 161 (178)
...+++|+|.+.+... .. .|.+ ....+-+||.||+|+.+. +...+.+..+.+ +...|+++||+
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea---e~~~l~~L~~~l-q~~~V~pvsA~ 350 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA---EKNLLSSLAKRL-QNPHVVPVSAK 350 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH---HHHHHHHHHHHc-CCCcEEEeeec
Confidence 3678999999877321 00 1111 234568999999999644 222223333332 33379999999
Q ss_pred cCCCHHHHHHHHhhh
Q 030407 162 WVIGIIFTLSITHYI 176 (178)
Q Consensus 162 ~g~gi~el~~~l~~~ 176 (178)
+|+|+++|++.+.+.
T Consensus 351 ~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 351 SGEGLEELLNGLREL 365 (366)
T ss_pred cccchHHHHHHHhhc
Confidence 999999999987653
No 228
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=97.83 E-value=2.6e-05 Score=58.69 Aligned_cols=100 Identities=20% Similarity=0.114 Sum_probs=68.2
Q ss_pred hCCCCEEEEeCCcc----hhhhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhH
Q 030407 71 LFKADLLLCESGGD----NLAANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGA 137 (178)
Q Consensus 71 ~~~~d~iiiEttG~----~~~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~ 137 (178)
...+.+-+..|.|. .+.+.|++ .+.++|+|+|++..+.... .|...-....++|.||+|.-++...
T Consensus 57 g~~~KlaiWDTAGqErFRtLTpSyyR-gaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V 135 (209)
T KOG0080|consen 57 GKRLKLAIWDTAGQERFRTLTPSYYR-GAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVV 135 (209)
T ss_pred CceEEEEEEeccchHhhhccCHhHhc-cCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccc
Confidence 34678889999993 13344544 7899999999988654321 1111123345899999998654324
Q ss_pred hHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHH
Q 030407 138 DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 173 (178)
Q Consensus 138 ~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l 173 (178)
..++-.++.++. ..-++++|||+.+|++..|+.+
T Consensus 136 ~reEG~kfAr~h--~~LFiE~SAkt~~~V~~~Feel 169 (209)
T KOG0080|consen 136 DREEGLKFARKH--RCLFIECSAKTRENVQCCFEEL 169 (209)
T ss_pred cHHHHHHHHHhh--CcEEEEcchhhhccHHHHHHHH
Confidence 455555566654 4688999999999999988754
No 229
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.83 E-value=4e-05 Score=56.52 Aligned_cols=100 Identities=17% Similarity=0.144 Sum_probs=67.4
Q ss_pred CCCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc--C-------CCCCCCceeEEEEecCCCCCchhHh
Q 030407 72 FKADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR--K-------GGPGITQADLLVINKTDLASAIGAD 138 (178)
Q Consensus 72 ~~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~--~-------~~~qi~~adiiviNK~Dl~~~~~~~ 138 (178)
..+.+-++++.|... ...+ ...+|++|+++|.++...... . +.. -..+-+++.||.|+.+.....
T Consensus 46 ~~~~l~i~D~~g~~~~~~~~~~~-~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~ 123 (162)
T PF00071_consen 46 KPVNLEIWDTSGQERFDSLRDIF-YRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVS 123 (162)
T ss_dssp EEEEEEEEEETTSGGGHHHHHHH-HTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSC
T ss_pred ccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccc-ccccceeeeccccccccccch
Confidence 357788999999421 1112 224699999999876432211 0 111 124678999999998632134
Q ss_pred HHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 139 LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 139 ~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
.+..++..++.+ .+++++||+++.|+.++|..+.+
T Consensus 124 ~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~~i~ 158 (162)
T PF00071_consen 124 VEEAQEFAKELG--VPYFEVSAKNGENVKEIFQELIR 158 (162)
T ss_dssp HHHHHHHHHHTT--SEEEEEBTTTTTTHHHHHHHHHH
T ss_pred hhHHHHHHHHhC--CEEEEEECCCCCCHHHHHHHHHH
Confidence 456666776654 79999999999999999987654
No 230
>PRK12735 elongation factor Tu; Reviewed
Probab=97.82 E-value=8.6e-05 Score=63.68 Aligned_cols=102 Identities=11% Similarity=0.103 Sum_probs=62.6
Q ss_pred CCCEEEEeCCcch--hhhcc-cccccceEEEEEeCCCCCCCCc-CCCC---CCCceeE-EEEecCCCCCchhHh-HH---
Q 030407 73 KADLLLCESGGDN--LAANF-SRELADYIIYIIDVSGGDKIPR-KGGP---GITQADL-LVINKTDLASAIGAD-LA--- 140 (178)
Q Consensus 73 ~~d~iiiEttG~~--~~~~~-~~~~ad~~I~VvD~~~~~~~~~-~~~~---qi~~adi-iviNK~Dl~~~~~~~-~~--- 140 (178)
+..+.|+.|.|.. +..+. ....+|.+++|+|+..+...+. .+.. ....+.+ +++||+|+.+. ++ .+
T Consensus 74 ~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~--~~~~~~~~ 151 (396)
T PRK12735 74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD--EELLELVE 151 (396)
T ss_pred CcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcch--HHHHHHHH
Confidence 4568999999931 11111 1124699999999987643221 1111 1233445 47999999854 22 22
Q ss_pred -HHHHHHHhcC-C--CCCEEEEecccC----------CCHHHHHHHHhhh
Q 030407 141 -VMERDALRMR-D--GGPFIFAQVGWV----------IGIIFTLSITHYI 176 (178)
Q Consensus 141 -~~~~~l~~~n-p--~a~i~~~SA~~g----------~gi~el~~~l~~~ 176 (178)
++.+.++... + ..+++++||++| .|+..|++.|..+
T Consensus 152 ~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 152 MEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred HHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 3444444332 2 378999999998 4789999888754
No 231
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.81 E-value=6.5e-05 Score=53.98 Aligned_cols=53 Identities=23% Similarity=0.117 Sum_probs=40.6
Q ss_pred CceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHh
Q 030407 119 TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 174 (178)
Q Consensus 119 ~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~ 174 (178)
..+.++++||+|+... ...+...+.+... +..+++++||++|.|+.+++++|.
T Consensus 108 ~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~-~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 108 NVPIILVGNKIDLRDA--KLKTHVAFLFAKL-NGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred CCcEEEEEEcccCCcc--hhhHHHHHHHhhc-cCCceEEeecCCCCCHHHHHHHhh
Confidence 5578999999999876 3344444444443 345799999999999999999875
No 232
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.81 E-value=9.2e-05 Score=66.58 Aligned_cols=99 Identities=16% Similarity=0.074 Sum_probs=59.0
Q ss_pred CEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCchh----------
Q 030407 75 DLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIG---------- 136 (178)
Q Consensus 75 d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~~---------- 136 (178)
.+.|+.|.|.. +.... ...+|.+++|+|++++...+.. .......+-++++||+|+.+...
T Consensus 72 ~i~~iDTPG~e~f~~~~~~~-~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~ 150 (586)
T PRK04004 72 GLLFIDTPGHEAFTNLRKRG-GALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLES 150 (586)
T ss_pred CEEEEECCChHHHHHHHHHh-HhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHH
Confidence 47899999931 11111 1246999999999876322210 11112345699999999863200
Q ss_pred -----Hh-HH-------HHHHHHHh-------------cCCCCCEEEEecccCCCHHHHHHHHh
Q 030407 137 -----AD-LA-------VMERDALR-------------MRDGGPFIFAQVGWVIGIIFTLSITH 174 (178)
Q Consensus 137 -----~~-~~-------~~~~~l~~-------------~np~a~i~~~SA~~g~gi~el~~~l~ 174 (178)
.. .+ ++...+.+ +....+++++||++|+|+++|++.+.
T Consensus 151 ~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~ 214 (586)
T PRK04004 151 IEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLA 214 (586)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHH
Confidence 00 00 11122221 12346899999999999999998764
No 233
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.81 E-value=0.00014 Score=63.33 Aligned_cols=96 Identities=16% Similarity=0.046 Sum_probs=55.8
Q ss_pred CCCEEEEeCCcch--hhhcc-cccccceEEEEEeCCCCCCC-CcCCCCC----------CCce-eEEEEecCCCCCch--
Q 030407 73 KADLLLCESGGDN--LAANF-SRELADYIIYIIDVSGGDKI-PRKGGPG----------ITQA-DLLVINKTDLASAI-- 135 (178)
Q Consensus 73 ~~d~iiiEttG~~--~~~~~-~~~~ad~~I~VvD~~~~~~~-~~~~~~q----------i~~a-diiviNK~Dl~~~~-- 135 (178)
+.-+-||+|.|-. +..+. ....+|..|+|+|+..+.-. ...+..| +..+ -++++||+|+.+..
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~ 163 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYS 163 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhh
Confidence 4567889999921 11111 11247999999999875211 0011111 2333 37789999987320
Q ss_pred hH----hHHHHHHHHHhcC--C-CCCEEEEecccCCCHHH
Q 030407 136 GA----DLAVMERDALRMR--D-GGPFIFAQVGWVIGIIF 168 (178)
Q Consensus 136 ~~----~~~~~~~~l~~~n--p-~a~i~~~SA~~g~gi~e 168 (178)
.+ -.+++...+++.. + ..+++++||++|+|+.+
T Consensus 164 ~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 164 KARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 01 1344555555432 1 36899999999999853
No 234
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=5e-05 Score=63.07 Aligned_cols=101 Identities=18% Similarity=0.140 Sum_probs=64.6
Q ss_pred EEEEeCCcch-h-hhccc-ccccceEEEEEeCCCCCCCCcCCC-----CCCCc-eeEEEEecCCCCCch--hHhHHHHHH
Q 030407 76 LLLCESGGDN-L-AANFS-RELADYIIYIIDVSGGDKIPRKGG-----PGITQ-ADLLVINKTDLASAI--GADLAVMER 144 (178)
Q Consensus 76 ~iiiEttG~~-~-~~~~~-~~~ad~~I~VvD~~~~~~~~~~~~-----~qi~~-adiiviNK~Dl~~~~--~~~~~~~~~ 144 (178)
+=|+.+.|-- + +.+.+ ..+-|+.++|+.+.+.-.++.... +.+.. --+|+-||+||++.. .+..+++.+
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~y~qIk~ 167 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENYEQIKE 167 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHHHHHHHHHHHHH
Confidence 4478888821 1 22222 112389999999987543332111 11222 347889999999872 122344555
Q ss_pred HHHhc-CCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 145 DALRM-RDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 145 ~l~~~-np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+++.- ..++||+++||..+.+|+.|+++|.+.
T Consensus 168 FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~ 200 (415)
T COG5257 168 FVKGTVAENAPIIPISAQHKANIDALIEAIEKY 200 (415)
T ss_pred HhcccccCCCceeeehhhhccCHHHHHHHHHHh
Confidence 56533 356899999999999999999998865
No 235
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.80 E-value=5e-05 Score=66.15 Aligned_cols=104 Identities=14% Similarity=0.136 Sum_probs=61.3
Q ss_pred CCCEEEEeCCcch--hhhccc-ccccceEEEEEeCCCCCC-------CCc-CC---CCCCCcee-EEEEecCCCC--Cch
Q 030407 73 KADLLLCESGGDN--LAANFS-RELADYIIYIIDVSGGDK-------IPR-KG---GPGITQAD-LLVINKTDLA--SAI 135 (178)
Q Consensus 73 ~~d~iiiEttG~~--~~~~~~-~~~ad~~I~VvD~~~~~~-------~~~-~~---~~qi~~ad-iiviNK~Dl~--~~~ 135 (178)
+..+.||.|.|-. +..+.. ...+|.+++|+|+..+.. .+. .+ ...+.... ++++||+|.. +..
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~ 163 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYS 163 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhh
Confidence 5678899999921 111111 124699999999988641 110 11 11133344 5899999943 221
Q ss_pred hHhHHHHHHHHH----hc--CC-CCCEEEEecccCCCHHH------------HHHHHhhh
Q 030407 136 GADLAVMERDAL----RM--RD-GGPFIFAQVGWVIGIIF------------TLSITHYI 176 (178)
Q Consensus 136 ~~~~~~~~~~l~----~~--np-~a~i~~~SA~~g~gi~e------------l~~~l~~~ 176 (178)
.+..+.+.+.++ .. ++ ..+++++||.+|+|+.+ |++.|..+
T Consensus 164 ~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~ 223 (446)
T PTZ00141 164 QERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTL 223 (446)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCC
Confidence 133333333333 22 22 47899999999999964 77777653
No 236
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=97.78 E-value=2.2e-05 Score=58.32 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=71.0
Q ss_pred CCCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CC----CCC-CCceeEEEEecCCCCCchhHhHH
Q 030407 72 FKADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KG----GPG-ITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 72 ~~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~----~~q-i~~adiiviNK~Dl~~~~~~~~~ 140 (178)
.....-|..|.|-- +..+++. ..+++++|+|+++++.... ++ ..+ -..+-++|.||.|+++......+
T Consensus 55 ~~VkLqIwDtAGqErFrtitstyyr-gthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~ 133 (198)
T KOG0079|consen 55 DRVKLQIWDTAGQERFRTITSTYYR-GTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTE 133 (198)
T ss_pred cEEEEEEeecccHHHHHHHHHHHcc-CCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehH
Confidence 35777788999932 2344554 5799999999999875432 11 111 12346999999999875323445
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
..+++..+. +.+.|+||||..+++++.|.-|.+++
T Consensus 134 dAr~~A~~m--gie~FETSaKe~~NvE~mF~cit~qv 168 (198)
T KOG0079|consen 134 DARAFALQM--GIELFETSAKENENVEAMFHCITKQV 168 (198)
T ss_pred HHHHHHHhc--CchheehhhhhcccchHHHHHHHHHH
Confidence 556666554 56999999999999999998766543
No 237
>CHL00071 tufA elongation factor Tu
Probab=97.78 E-value=6.9e-05 Score=64.54 Aligned_cols=90 Identities=11% Similarity=0.117 Sum_probs=55.0
Q ss_pred CCCEEEEeCCcch--hhhcc-cccccceEEEEEeCCCCCCCCcC----CCCCCCce-eEEEEecCCCCCchhHh-H----
Q 030407 73 KADLLLCESGGDN--LAANF-SRELADYIIYIIDVSGGDKIPRK----GGPGITQA-DLLVINKTDLASAIGAD-L---- 139 (178)
Q Consensus 73 ~~d~iiiEttG~~--~~~~~-~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~a-diiviNK~Dl~~~~~~~-~---- 139 (178)
+..+.||.|.|-. +.... ....+|.+++|+|+..+...+.. .......+ -++++||+|+++. .+ .
T Consensus 74 ~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~--~~~~~~~~ 151 (409)
T CHL00071 74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDD--EELLELVE 151 (409)
T ss_pred CeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCH--HHHHHHHH
Confidence 4568999999931 11111 11246999999999876432211 11112344 4678999999875 32 2
Q ss_pred HHHHHHHHhcC-C--CCCEEEEecccCC
Q 030407 140 AVMERDALRMR-D--GGPFIFAQVGWVI 164 (178)
Q Consensus 140 ~~~~~~l~~~n-p--~a~i~~~SA~~g~ 164 (178)
+++.+.++... + ..+++++||++|.
T Consensus 152 ~~l~~~l~~~~~~~~~~~ii~~Sa~~g~ 179 (409)
T CHL00071 152 LEVRELLSKYDFPGDDIPIVSGSALLAL 179 (409)
T ss_pred HHHHHHHHHhCCCCCcceEEEcchhhcc
Confidence 24455555432 2 3799999999986
No 238
>PRK10218 GTP-binding protein; Provisional
Probab=97.78 E-value=6.2e-05 Score=67.85 Aligned_cols=103 Identities=13% Similarity=0.083 Sum_probs=64.7
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCch-hHhHHHHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAI-GADLAVME 143 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~-~~~~~~~~ 143 (178)
+..+-+++|.|.. ....+ ...+|++++|+|+..+...+.. .......+-++++||+|+.... ...++.+.
T Consensus 67 ~~~inliDTPG~~df~~~v~~~-l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~ 145 (607)
T PRK10218 67 DYRINIVDTPGHADFGGEVERV-MSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVF 145 (607)
T ss_pred CEEEEEEECCCcchhHHHHHHH-HHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHH
Confidence 5778999999931 11111 1247999999999876433211 1112344569999999997542 12234444
Q ss_pred HHHHhcC-----CCCCEEEEecccCC----------CHHHHHHHHhhh
Q 030407 144 RDALRMR-----DGGPFIFAQVGWVI----------GIIFTLSITHYI 176 (178)
Q Consensus 144 ~~l~~~n-----p~a~i~~~SA~~g~----------gi~el~~~l~~~ 176 (178)
..+..+. -..|++++||++|. |+..|++.+...
T Consensus 146 ~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~ 193 (607)
T PRK10218 146 DLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDH 193 (607)
T ss_pred HHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHh
Confidence 4443221 13689999999998 688998876543
No 239
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.76 E-value=8.9e-05 Score=63.51 Aligned_cols=101 Identities=11% Similarity=0.132 Sum_probs=59.7
Q ss_pred CCCEEEEeCCcch--hhhccc-ccccceEEEEEeCCCCCCCCc-CC---CCCCCceeE-EEEecCCCCCchhHh-H----
Q 030407 73 KADLLLCESGGDN--LAANFS-RELADYIIYIIDVSGGDKIPR-KG---GPGITQADL-LVINKTDLASAIGAD-L---- 139 (178)
Q Consensus 73 ~~d~iiiEttG~~--~~~~~~-~~~ad~~I~VvD~~~~~~~~~-~~---~~qi~~adi-iviNK~Dl~~~~~~~-~---- 139 (178)
+..+.||.|.|-. +..++. ...+|.+++|+|+..+...+. .+ ......+-+ +++||+|+.++ ++ .
T Consensus 74 ~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~--~~~~~~~~ 151 (394)
T TIGR00485 74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD--EELLELVE 151 (394)
T ss_pred CEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCH--HHHHHHHH
Confidence 4568899999931 111111 123699999999987643221 11 111233445 57999999865 22 2
Q ss_pred HHHHHHHHhcC-C--CCCEEEEecccCC--------CHHHHHHHHhh
Q 030407 140 AVMERDALRMR-D--GGPFIFAQVGWVI--------GIIFTLSITHY 175 (178)
Q Consensus 140 ~~~~~~l~~~n-p--~a~i~~~SA~~g~--------gi~el~~~l~~ 175 (178)
+++.+.++... + ..+++++||++|. ++..+++.|..
T Consensus 152 ~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~ 198 (394)
T TIGR00485 152 MEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDE 198 (394)
T ss_pred HHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHh
Confidence 23555555442 2 2799999999885 45566666553
No 240
>PRK14974 cell division protein FtsY; Provisional
Probab=97.76 E-value=0.00021 Score=60.09 Aligned_cols=150 Identities=19% Similarity=0.286 Sum_probs=83.8
Q ss_pred HHHHHHhhcC-CcEEEEEecCC-C-chhHH--HHHHcCCCCccceeecccCCCcccccccccccCHhHHHhhHhhCCCCE
Q 030407 2 LALCKFLRDK-YSLAAVTNDIF-T-KEDGE--FLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADL 76 (178)
Q Consensus 2 ~~~~~~~~~~-~~vaVI~nd~g-~-~iD~~--li~~~~~~~~~~~~~l~~GcCc~l~i~~dl~~~l~~l~~l~~~~~~d~ 76 (178)
.++..++.+. ++++++..|.. . .++.. +....|+ ++.....|..+. .....++... ...++|+
T Consensus 158 akLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv----~v~~~~~g~dp~-------~v~~~ai~~~-~~~~~Dv 225 (336)
T PRK14974 158 AKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGV----KVIKHKYGADPA-------AVAYDAIEHA-KARGIDV 225 (336)
T ss_pred HHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCC----ceecccCCCCHH-------HHHHHHHHHH-HhCCCCE
Confidence 3566666654 88999888854 3 23221 1222343 444443444331 0011333332 3557999
Q ss_pred EEEeCCcchhh-----hc---cc-ccccceEEEEEeCCCCCCCCcC--CCCCCCceeEEEEecCCCCCchhHhHHHHHHH
Q 030407 77 LLCESGGDNLA-----AN---FS-RELADYIIYIIDVSGGDKIPRK--GGPGITQADLLVINKTDLASAIGADLAVMERD 145 (178)
Q Consensus 77 iiiEttG~~~~-----~~---~~-~~~ad~~I~VvD~~~~~~~~~~--~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~ 145 (178)
|+|+|.|.... .. +. ....|.+++|+|+..+.+.... .....-..+-+++||.|.....+..+..
T Consensus 226 VLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD~~~~~G~~ls~---- 301 (336)
T PRK14974 226 VLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGAALSI---- 301 (336)
T ss_pred EEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeecCCCCccHHHHH----
Confidence 99999995311 01 10 0123778999999876543221 1111123589999999997653333333
Q ss_pred HHhcCCCCCEEEEecccCCCHHHHHH
Q 030407 146 ALRMRDGGPFIFAQVGWVIGIIFTLS 171 (178)
Q Consensus 146 l~~~np~a~i~~~SA~~g~gi~el~~ 171 (178)
.... +.|+.+++ +|+++++|..
T Consensus 302 ~~~~--~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 302 AYVI--GKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred HHHH--CcCEEEEe--CCCChhhccc
Confidence 3322 46899988 8999988753
No 241
>PRK13796 GTPase YqeH; Provisional
Probab=97.76 E-value=4.2e-05 Score=64.98 Aligned_cols=79 Identities=14% Similarity=-0.012 Sum_probs=49.4
Q ss_pred ceEEEEEeCCCCCCCCcC-CCCCC-CceeEEEEecCCCCCchhHhHHHHHHHHH----hcC-CCCCEEEEecccCCCHHH
Q 030407 96 DYIIYIIDVSGGDKIPRK-GGPGI-TQADLLVINKTDLASAIGADLAVMERDAL----RMR-DGGPFIFAQVGWVIGIIF 168 (178)
Q Consensus 96 d~~I~VvD~~~~~~~~~~-~~~qi-~~adiiviNK~Dl~~~~~~~~~~~~~~l~----~~n-p~a~i~~~SA~~g~gi~e 168 (178)
+.+++|+|+.+....... ..... ...-++|+||+||.+.. ...+++.++++ ..+ +...++.+||++|.|+++
T Consensus 71 ~lIv~VVD~~D~~~s~~~~L~~~~~~kpviLViNK~DLl~~~-~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~e 149 (365)
T PRK13796 71 ALVVNVVDIFDFNGSWIPGLHRFVGNNPVLLVGNKADLLPKS-VKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDE 149 (365)
T ss_pred cEEEEEEECccCCCchhHHHHHHhCCCCEEEEEEchhhCCCc-cCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHH
Confidence 478999998765422110 00001 23568999999998641 22233333333 222 123799999999999999
Q ss_pred HHHHHhh
Q 030407 169 TLSITHY 175 (178)
Q Consensus 169 l~~~l~~ 175 (178)
+++.+.+
T Consensus 150 L~~~I~~ 156 (365)
T PRK13796 150 LLEAIEK 156 (365)
T ss_pred HHHHHHH
Confidence 9998864
No 242
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.75 E-value=1.9e-05 Score=61.77 Aligned_cols=95 Identities=16% Similarity=0.085 Sum_probs=58.4
Q ss_pred CCCEEEEeCCcch-hh-hc-ccccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCc-----hhHhHH
Q 030407 73 KADLLLCESGGDN-LA-AN-FSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA-----IGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~-~~-~~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~-----~~~~~~ 140 (178)
++.+.++.|.|.. .. .. .....+|.+++|+|+.++...... .......+.++|+||+|++.. ..+..+
T Consensus 70 ~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~~~ 149 (213)
T cd04167 70 SYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYF 149 (213)
T ss_pred EEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHHHH
Confidence 4678899999931 11 11 111246999999999876533211 011123678999999998621 114445
Q ss_pred HHHHHHHhcCCCC------------C----EEEEecccCCCHH
Q 030407 141 VMERDALRMRDGG------------P----FIFAQVGWVIGII 167 (178)
Q Consensus 141 ~~~~~l~~~np~a------------~----i~~~SA~~g~gi~ 167 (178)
++.+.++++||.+ | +++.||+.|-++.
T Consensus 150 ~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 150 KLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence 6666666665432 2 7788999887765
No 243
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=6.5e-05 Score=55.79 Aligned_cols=101 Identities=15% Similarity=0.026 Sum_probs=70.1
Q ss_pred CCCEEEEeCCcchh---hhcccccccceEEEEEeCCCCCCCCc--CCC------CCCCceeEEEEecCCCCCchhHhHHH
Q 030407 73 KADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLAV 141 (178)
Q Consensus 73 ~~d~iiiEttG~~~---~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~------~qi~~adiiviNK~Dl~~~~~~~~~~ 141 (178)
..++=+..|.|.-. ..+.....+++.|+++|.++...... .+. .......|+|.||+|+-++.....++
T Consensus 69 RiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~ 148 (193)
T KOG0093|consen 69 RIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHER 148 (193)
T ss_pred EEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHH
Confidence 47788888888421 12333346899999999987543211 111 22345679999999997764344566
Q ss_pred HHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 142 MERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 142 ~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
.+....++ +-.+|++|||.+.+++.+|+.+..
T Consensus 149 g~~l~~~L--GfefFEtSaK~NinVk~~Fe~lv~ 180 (193)
T KOG0093|consen 149 GRQLADQL--GFEFFETSAKENINVKQVFERLVD 180 (193)
T ss_pred HHHHHHHh--ChHHhhhcccccccHHHHHHHHHH
Confidence 66666666 348999999999999999997653
No 244
>COG0218 Predicted GTPase [General function prediction only]
Probab=97.72 E-value=0.00012 Score=56.88 Aligned_cols=79 Identities=10% Similarity=-0.050 Sum_probs=55.5
Q ss_pred ceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCchhHhHHHHHHHHH-hc--CCCCC--EEEEecccCCCH
Q 030407 96 DYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERDAL-RM--RDGGP--FIFAQVGWVIGI 166 (178)
Q Consensus 96 d~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~-~~--np~a~--i~~~SA~~g~gi 166 (178)
..++.++|+.++....+. +..+...+-+|++||+|.++. .+..+....++ .+ .|... ++..|+.+++|+
T Consensus 108 ~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~--~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi 185 (200)
T COG0218 108 KGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKK--SERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGI 185 (200)
T ss_pred eEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCCh--hHHHHHHHHHHHHhcCCCCccceEEEEecccccCH
Confidence 568999999987654331 223355677999999999987 55544444444 22 23333 889999999999
Q ss_pred HHHHHHHhhh
Q 030407 167 IFTLSITHYI 176 (178)
Q Consensus 167 ~el~~~l~~~ 176 (178)
+++.+.|...
T Consensus 186 ~~l~~~i~~~ 195 (200)
T COG0218 186 DELKAKILEW 195 (200)
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 245
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.72 E-value=7.7e-05 Score=67.15 Aligned_cols=103 Identities=14% Similarity=0.121 Sum_probs=64.0
Q ss_pred CCCEEEEeCCcch-hh---hcccccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCchh-HhHHHHH
Q 030407 73 KADLLLCESGGDN-LA---ANFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIG-ADLAVME 143 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~---~~~~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~~-~~~~~~~ 143 (178)
+..+-||.|.|-. .. ..+ ...+|.+++|+|+..+...+.. .......+-++++||+|+..... +..+++.
T Consensus 63 ~~kinlIDTPGh~DF~~ev~~~-l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~ 141 (594)
T TIGR01394 63 GTKINIVDTPGHADFGGEVERV-LGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVF 141 (594)
T ss_pred CEEEEEEECCCHHHHHHHHHHH-HHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHH
Confidence 5678899999921 00 111 1246999999999876432211 11123345699999999965411 1233444
Q ss_pred HHHHhcCC-----CCCEEEEecccCC----------CHHHHHHHHhhh
Q 030407 144 RDALRMRD-----GGPFIFAQVGWVI----------GIIFTLSITHYI 176 (178)
Q Consensus 144 ~~l~~~np-----~a~i~~~SA~~g~----------gi~el~~~l~~~ 176 (178)
..+..+.. ..|++++||++|. |++.|++.+...
T Consensus 142 ~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~ 189 (594)
T TIGR01394 142 DLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRH 189 (594)
T ss_pred HHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHh
Confidence 44433211 3589999999995 899999987654
No 246
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=97.69 E-value=5.3e-05 Score=70.08 Aligned_cols=101 Identities=16% Similarity=0.095 Sum_probs=63.9
Q ss_pred CCCEEEEeCCcch-hh---h----------ccc-ccccceEEEEEeCCCCCCCCcC--CCCCCCceeEEEEecCCCCCch
Q 030407 73 KADLLLCESGGDN-LA---A----------NFS-RELADYIIYIIDVSGGDKIPRK--GGPGITQADLLVINKTDLASAI 135 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~---~----------~~~-~~~ad~~I~VvD~~~~~~~~~~--~~~qi~~adiiviNK~Dl~~~~ 135 (178)
+.++.++.|.|.. +. . .+. ...+|.++.|+|+++....... .......+-++++||+|+.++
T Consensus 49 ~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l~l~~ql~e~giPvIvVlNK~Dl~~~- 127 (772)
T PRK09554 49 DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEK- 127 (772)
T ss_pred ceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhHHHHHHHHHcCCCEEEEEEchhhhhc-
Confidence 5678899999941 11 0 010 1236999999999875432110 001235678999999999754
Q ss_pred hHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 136 GADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 136 ~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.....-.+.+++.. +.|++++||++|+|++++.+.+...
T Consensus 128 -~~i~id~~~L~~~L-G~pVvpiSA~~g~GIdeL~~~I~~~ 166 (772)
T PRK09554 128 -QNIRIDIDALSARL-GCPVIPLVSTRGRGIEALKLAIDRH 166 (772)
T ss_pred -cCcHHHHHHHHHHh-CCCEEEEEeecCCCHHHHHHHHHHh
Confidence 22221122233222 3589999999999999999988654
No 247
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.66 E-value=0.00054 Score=57.21 Aligned_cols=148 Identities=15% Similarity=0.146 Sum_probs=82.3
Q ss_pred HHHHHhhcC-CcEEEEEecCC-C-chhHHH--HHHcCCCCccceeecccCCCcccccccccccCHhHHHhhHhhCCCCEE
Q 030407 3 ALCKFLRDK-YSLAAVTNDIF-T-KEDGEF--LMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLL 77 (178)
Q Consensus 3 ~~~~~~~~~-~~vaVI~nd~g-~-~iD~~l--i~~~~~~~~~~~~~l~~GcCc~l~i~~dl~~~l~~l~~l~~~~~~d~i 77 (178)
++..++.+. ++|+++.-|.. . .++... -...++ ++.....+.-+.. ...+++... ...++|+|
T Consensus 133 kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i----~~~~~~~~~dpa~-------~v~~~l~~~-~~~~~D~V 200 (318)
T PRK10416 133 KLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGV----PVIAQKEGADPAS-------VAFDAIQAA-KARGIDVL 200 (318)
T ss_pred HHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCc----eEEEeCCCCCHHH-------HHHHHHHHH-HhCCCCEE
Confidence 455566554 89999999975 4 333321 122333 3333333332211 112333322 25689999
Q ss_pred EEeCCcchh---------hh------cccccccceEEEEEeCCCCCCCCcCCCCCC--CceeEEEEecCCCCCchhHhHH
Q 030407 78 LCESGGDNL---------AA------NFSRELADYIIYIIDVSGGDKIPRKGGPGI--TQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 78 iiEttG~~~---------~~------~~~~~~ad~~I~VvD~~~~~~~~~~~~~qi--~~adiiviNK~Dl~~~~~~~~~ 140 (178)
||+|.|... .. ...+...+..++|+|++.+........... -..+-+|+||.|.... ..
T Consensus 201 iIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~~~~~~giIlTKlD~t~~----~G 276 (318)
T PRK10416 201 IIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHEAVGLTGIILTKLDGTAK----GG 276 (318)
T ss_pred EEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHhhCCCCEEEEECCCCCCC----cc
Confidence 999999421 00 111222367899999987653322111111 1357899999996544 23
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHH
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTL 170 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~ 170 (178)
.+.+..... ..|+.+++ +|+++++|.
T Consensus 277 ~~l~~~~~~--~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 277 VVFAIADEL--GIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred HHHHHHHHH--CCCEEEEe--CCCChhhCc
Confidence 334444433 56899998 899998774
No 248
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=5.5e-05 Score=56.87 Aligned_cols=80 Identities=14% Similarity=0.060 Sum_probs=50.6
Q ss_pred cceEEEEEeCCCCCCCCc--CCCCC------CCceeEE-EEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCC
Q 030407 95 ADYIIYIIDVSGGDKIPR--KGGPG------ITQADLL-VINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIG 165 (178)
Q Consensus 95 ad~~I~VvD~~~~~~~~~--~~~~q------i~~adii-viNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~g 165 (178)
+=+.+.++|.++...... .+..| -+.+||| +.||+||.+......++..+...+. +.|+|+|||-+|.+
T Consensus 91 AMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~ky--glPYfETSA~tg~N 168 (219)
T KOG0081|consen 91 AMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKY--GLPYFETSACTGTN 168 (219)
T ss_pred hccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHh--CCCeeeeccccCcC
Confidence 456789999876543221 12222 3456755 5899999765222223333333333 56999999999999
Q ss_pred HHHHHHHHhhh
Q 030407 166 IIFTLSITHYI 176 (178)
Q Consensus 166 i~el~~~l~~~ 176 (178)
+++-.+.|...
T Consensus 169 v~kave~Lldl 179 (219)
T KOG0081|consen 169 VEKAVELLLDL 179 (219)
T ss_pred HHHHHHHHHHH
Confidence 99988866543
No 249
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.61 E-value=7.9e-05 Score=56.81 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=33.6
Q ss_pred ceEEEEEeCCCCCCCCc----CC--CCCCCceeEEEEecCCCCCchhHhHHHHHHHHHhc
Q 030407 96 DYIIYIIDVSGGDKIPR----KG--GPGITQADLLVINKTDLASAIGADLAVMERDALRM 149 (178)
Q Consensus 96 d~~I~VvD~~~~~~~~~----~~--~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~ 149 (178)
|.++.|+|+..+..... .. ......+-++|+||+|++++ +.+....+.+++.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~--~~l~~~~~~~~~~ 58 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPK--ENVEKWLKYLRRE 58 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCH--HHHHHHHHHHHhh
Confidence 67899999977543221 11 11123567999999999887 6666555555544
No 250
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00029 Score=59.22 Aligned_cols=110 Identities=16% Similarity=0.171 Sum_probs=69.9
Q ss_pred hhHhhCCCCEEEEeCCcc-hhhhccc--ccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCch--hH
Q 030407 67 ELSNLFKADLLLCESGGD-NLAANFS--RELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAI--GA 137 (178)
Q Consensus 67 ~l~~~~~~d~iiiEttG~-~~~~~~~--~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~--~~ 137 (178)
+|.+..+..+-+|.+.|- ++..+.. ....|.+++|+|+..|...+.. ..+.+-.--+||+||+|+.++- ..
T Consensus 63 rLpq~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~s 142 (522)
T KOG0461|consen 63 RLPQGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRAS 142 (522)
T ss_pred ccCccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhh
Confidence 344445788999999992 2222221 1124899999999887654321 1111223358999999998651 13
Q ss_pred hHHHHHHHHHh----c--CCCCCEEEEecccC----CCHHHHHHHHhhh
Q 030407 138 DLAVMERDALR----M--RDGGPFIFAQVGWV----IGIIFTLSITHYI 176 (178)
Q Consensus 138 ~~~~~~~~l~~----~--np~a~i~~~SA~~g----~gi~el~~~l~~~ 176 (178)
.+++....++. . ...+||+++||+.| ++|.||.+.|...
T Consensus 143 ki~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~ 191 (522)
T KOG0461|consen 143 KIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESR 191 (522)
T ss_pred HHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHh
Confidence 33444443332 1 23489999999999 9999999988654
No 251
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.60 E-value=0.00081 Score=54.94 Aligned_cols=147 Identities=16% Similarity=0.197 Sum_probs=82.1
Q ss_pred HHHHHhhcC-CcEEEEEecCC-C-chhHH--HHHHcCCCCccceeecccCCCcccccccccccC-HhHHHhhHhhCCCCE
Q 030407 3 ALCKFLRDK-YSLAAVTNDIF-T-KEDGE--FLMRNGALPEERIRAVETGGCPHAAIREDISIN-LGPLEELSNLFKADL 76 (178)
Q Consensus 3 ~~~~~~~~~-~~vaVI~nd~g-~-~iD~~--li~~~~~~~~~~~~~l~~GcCc~l~i~~dl~~~-l~~l~~l~~~~~~d~ 76 (178)
++..++.+. +||++|.-|.. . ..+.. +.+..|+ ++.....+..+ ... ...+.... ..++|+
T Consensus 91 kLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i----~~~~~~~~~dp--------~~~~~~~l~~~~-~~~~D~ 157 (272)
T TIGR00064 91 KLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGV----DVIKQKEGADP--------AAVAFDAIQKAK-ARNIDV 157 (272)
T ss_pred HHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCe----EEEeCCCCCCH--------HHHHHHHHHHHH-HCCCCE
Confidence 566666554 89999999965 4 33321 2233343 33333332211 111 13343332 568999
Q ss_pred EEEeCCcchhh---------------hcccccccceEEEEEeCCCCCCCCcC---CCCCCCceeEEEEecCCCCCchhHh
Q 030407 77 LLCESGGDNLA---------------ANFSRELADYIIYIIDVSGGDKIPRK---GGPGITQADLLVINKTDLASAIGAD 138 (178)
Q Consensus 77 iiiEttG~~~~---------------~~~~~~~ad~~I~VvD~~~~~~~~~~---~~~qi~~adiiviNK~Dl~~~~~~~ 138 (178)
|||+|.|.... ..+.....|.+++|+|++.+.+.... +.+.+ ..+-+|+||.|.....+..
T Consensus 158 ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~-~~~g~IlTKlDe~~~~G~~ 236 (272)
T TIGR00064 158 VLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAV-GLTGIILTKLDGTAKGGII 236 (272)
T ss_pred EEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhC-CCCEEEEEccCCCCCccHH
Confidence 99999994211 01111225889999999765432111 11112 2579999999987653233
Q ss_pred HHHHHHHHHhcCCCCCEEEEecccCCCHHHHHH
Q 030407 139 LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS 171 (178)
Q Consensus 139 ~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~ 171 (178)
+ ...... ..|+.+++ +|+++++|..
T Consensus 237 l----~~~~~~--~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 237 L----SIAYEL--KLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred H----HHHHHH--CcCEEEEe--CCCChHhCcc
Confidence 3 233322 36888888 8999877743
No 252
>PLN03127 Elongation factor Tu; Provisional
Probab=97.60 E-value=0.00015 Score=63.20 Aligned_cols=102 Identities=14% Similarity=0.172 Sum_probs=59.4
Q ss_pred CCCEEEEeCCcch--hhhcc-cccccceEEEEEeCCCCCCCCc-CC---CCCCCcee-EEEEecCCCCCchhHh-HHHHH
Q 030407 73 KADLLLCESGGDN--LAANF-SRELADYIIYIIDVSGGDKIPR-KG---GPGITQAD-LLVINKTDLASAIGAD-LAVME 143 (178)
Q Consensus 73 ~~d~iiiEttG~~--~~~~~-~~~~ad~~I~VvD~~~~~~~~~-~~---~~qi~~ad-iiviNK~Dl~~~~~~~-~~~~~ 143 (178)
+..++||.|.|.. +..+. ....+|.+++|+|+..+...+. .+ ......+. ++++||+|+++. .+ .+.+.
T Consensus 123 ~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~--~~~~~~i~ 200 (447)
T PLN03127 123 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDD--EELLELVE 200 (447)
T ss_pred CeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCH--HHHHHHHH
Confidence 4568999999931 01111 1123699999999987643221 11 11233454 678999999864 32 22333
Q ss_pred HHHHhc----C---CCCCEEEEecc---cCCC-------HHHHHHHHhhh
Q 030407 144 RDALRM----R---DGGPFIFAQVG---WVIG-------IIFTLSITHYI 176 (178)
Q Consensus 144 ~~l~~~----n---p~a~i~~~SA~---~g~g-------i~el~~~l~~~ 176 (178)
+.+++. . ...|++++||. +|.| +.+|++.+..+
T Consensus 201 ~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~ 250 (447)
T PLN03127 201 MELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY 250 (447)
T ss_pred HHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence 233322 1 13688888875 5555 78888887654
No 253
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.50 E-value=0.00026 Score=56.11 Aligned_cols=89 Identities=18% Similarity=0.130 Sum_probs=53.2
Q ss_pred CCCEEEEeCCcchhhhccc-ccccceEEEEEeCCCCCCCCcC-CC---CCCCceeE-EEEecCCCCCchhHhHHHHHHHH
Q 030407 73 KADLLLCESGGDNLAANFS-RELADYIIYIIDVSGGDKIPRK-GG---PGITQADL-LVINKTDLASAIGADLAVMERDA 146 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~~~~-~~~ad~~I~VvD~~~~~~~~~~-~~---~qi~~adi-iviNK~Dl~~~~~~~~~~~~~~l 146 (178)
+..+.+++|.|. +..... ...+|.+++|+|+..+...... .. .....+.+ +|+||+|+.++. ...+.+.+.+
T Consensus 82 ~~~i~~vDtPg~-~~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~-~~~~~~~~~l 159 (225)
T cd01882 82 KRRLTFIECPND-INAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKN-KTLRKTKKRL 159 (225)
T ss_pred CceEEEEeCCch-HHHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcH-HHHHHHHHHH
Confidence 455788899883 221111 1346999999999876433211 00 01123444 499999998541 2334444333
Q ss_pred H-----hcCCCCCEEEEecccC
Q 030407 147 L-----RMRDGGPFIFAQVGWV 163 (178)
Q Consensus 147 ~-----~~np~a~i~~~SA~~g 163 (178)
+ +..++.+++++||++.
T Consensus 160 ~~~~~~~~~~~~ki~~iSa~~~ 181 (225)
T cd01882 160 KHRFWTEVYQGAKLFYLSGIVH 181 (225)
T ss_pred HHHHHHhhCCCCcEEEEeeccC
Confidence 2 3468899999999986
No 254
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=97.47 E-value=0.00034 Score=60.93 Aligned_cols=94 Identities=17% Similarity=0.049 Sum_probs=56.6
Q ss_pred CCCEEEEeCCcch----hhh-------cccccccceEEEEEeCCCCCCCCcCCCC---CCCceeEEEEecCCCCCchhHh
Q 030407 73 KADLLLCESGGDN----LAA-------NFSRELADYIIYIIDVSGGDKIPRKGGP---GITQADLLVINKTDLASAIGAD 138 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~-------~~~~~~ad~~I~VvD~~~~~~~~~~~~~---qi~~adiiviNK~Dl~~~~~~~ 138 (178)
+..+.++.|.|.. ... ......+|.+++|+|++++......+.. ....+-++|+||+|+.++ +
T Consensus 250 g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl~~~---~ 326 (442)
T TIGR00450 250 GILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDLKIN---S 326 (442)
T ss_pred CEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEEECccCCCc---c
Confidence 3456889999941 000 0111247999999999876432211111 123456999999999654 2
Q ss_pred HHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 139 LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 139 ~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
.+.+ .+.. ..+++.+||++ .||+++++.+.+
T Consensus 327 ~~~~---~~~~--~~~~~~vSak~-~gI~~~~~~L~~ 357 (442)
T TIGR00450 327 LEFF---VSSK--VLNSSNLSAKQ-LKIKALVDLLTQ 357 (442)
T ss_pred hhhh---hhhc--CCceEEEEEec-CCHHHHHHHHHH
Confidence 2221 2222 34789999998 588888776654
No 255
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=97.44 E-value=0.0003 Score=56.10 Aligned_cols=47 Identities=19% Similarity=0.015 Sum_probs=36.1
Q ss_pred ceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 120 QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 120 ~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
.+-++|+||+|+.+. ++.+. +.+ . .+++++||++|.|++++++.+.+
T Consensus 177 ~p~iiV~NK~Dl~~~--~~~~~---~~~--~--~~~~~~SA~~g~gi~~l~~~i~~ 223 (233)
T cd01896 177 IPCLYVYNKIDLISI--EELDL---LAR--Q--PNSVVISAEKGLNLDELKERIWD 223 (233)
T ss_pred eeEEEEEECccCCCH--HHHHH---Hhc--C--CCEEEEcCCCCCCHHHHHHHHHH
Confidence 356899999999877 55442 211 2 36899999999999999998765
No 256
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=8.4e-05 Score=56.54 Aligned_cols=80 Identities=21% Similarity=0.177 Sum_probs=56.2
Q ss_pred ccceEEEEEeCCCCCCCCcC---------CCCCCCceeEEEEecCCCCCchhHhHHHHHHHHH--hcC--CCCCEEEEec
Q 030407 94 LADYIIYIIDVSGGDKIPRK---------GGPGITQADLLVINKTDLASAIGADLAVMERDAL--RMR--DGGPFIFAQV 160 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~~---------~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~--~~n--p~a~i~~~SA 160 (178)
.+|++|+++|+++.+..+.. ...+-..+-++..||-|+.+. .+.+.+..... +.+ |..++.++||
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~--~~~~El~~~~~~~e~~~~rd~~~~pvSa 169 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA--MEAAELDGVFGLAELIPRRDNPFQPVSA 169 (197)
T ss_pred HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh--hhHHHHHHHhhhhhhcCCccCccccchh
Confidence 57999999999885433221 112234567899999999877 45555554443 444 4568999999
Q ss_pred ccCCCHHHHHHHHhh
Q 030407 161 GWVIGIIFTLSITHY 175 (178)
Q Consensus 161 ~~g~gi~el~~~l~~ 175 (178)
.+|+||+|-.+++..
T Consensus 170 l~gegv~egi~w~v~ 184 (197)
T KOG0076|consen 170 LTGEGVKEGIEWLVK 184 (197)
T ss_pred hhcccHHHHHHHHHH
Confidence 999999998887643
No 257
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.00035 Score=51.79 Aligned_cols=100 Identities=15% Similarity=0.093 Sum_probs=59.5
Q ss_pred CCCEEEEeCCcchhhh---cccccccceEEEEEeCCCCCCCCcC--------CCCCCCce-eEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIPRK--------GGPGITQA-DLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~---~~~~~~ad~~I~VvD~~~~~~~~~~--------~~~qi~~a-diiviNK~Dl~~~~~~~~~ 140 (178)
++.+=..|--| ++++ +|. ...+.+|+|||.++.+..... ..+.++.| -+++.||-|.... -...
T Consensus 63 k~~vwdLggqt-SirPyWRcYy-~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~--~t~~ 138 (182)
T KOG0072|consen 63 KFQVWDLGGQT-SIRPYWRCYY-ADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA--LTRS 138 (182)
T ss_pred cceeeEccCcc-cccHHHHHHh-cccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh--hhHH
Confidence 45544545444 3331 222 356899999999876543210 11123333 5778999998644 2222
Q ss_pred HHHHHHH--hc-CCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDAL--RM-RDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~--~~-np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
++...+. ++ +....|+.+||.+|+|+++..+||.+.
T Consensus 139 E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~ 177 (182)
T KOG0072|consen 139 EVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRP 177 (182)
T ss_pred HHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHH
Confidence 2221111 11 233689999999999999999999864
No 258
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.00038 Score=52.10 Aligned_cols=94 Identities=15% Similarity=0.130 Sum_probs=57.2
Q ss_pred CCEEEEeCCcc----hhhhcccccccceEEEEEeCCCCCCCCc--CC---CCCC---CceeEEEEecCCCCCchhHhHH-
Q 030407 74 ADLLLCESGGD----NLAANFSRELADYIIYIIDVSGGDKIPR--KG---GPGI---TQADLLVINKTDLASAIGADLA- 140 (178)
Q Consensus 74 ~d~iiiEttG~----~~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~---~~qi---~~adiiviNK~Dl~~~~~~~~~- 140 (178)
...=|..|.|- ++...|++ .+.+.++|+|++..+.... .+ .+.+ ....+++.||.||-++ -+..
T Consensus 58 vKLQIWDTAGQErFRSVtRsYYR-GAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~--R~Vtf 134 (214)
T KOG0086|consen 58 VKLQIWDTAGQERFRSVTRSYYR-GAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPE--REVTF 134 (214)
T ss_pred EEEEEeecccHHHHHHHHHHHhc-cccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChh--hhhhH
Confidence 34456677773 12334444 6788999999988764422 01 1122 2345777899999766 3322
Q ss_pred -HHHHHHHhcCCCCCEEEEecccCCCHHHHHHH
Q 030407 141 -VMERDALRMRDGGPFIFAQVGWVIGIIFTLSI 172 (178)
Q Consensus 141 -~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~ 172 (178)
+..++.++ | ..-.++|||+||++++|-|-.
T Consensus 135 lEAs~FaqE-n-el~flETSa~TGeNVEEaFl~ 165 (214)
T KOG0086|consen 135 LEASRFAQE-N-ELMFLETSALTGENVEEAFLK 165 (214)
T ss_pred HHHHhhhcc-c-ceeeeeecccccccHHHHHHH
Confidence 22223332 2 346789999999999998743
No 259
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=97.40 E-value=0.0001 Score=53.96 Aligned_cols=99 Identities=18% Similarity=0.171 Sum_probs=61.0
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCCC------CCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGGP------GITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~~------qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
+...=+..|.|.. +...|+ ..+|..+.+.|..+...... .+.. +-..+-.++.||+|++.+.....+
T Consensus 46 kvklqiwdtagqerfrsvt~ayy-rda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~d 124 (192)
T KOG0083|consen 46 KVKLQIWDTAGQERFRSVTHAYY-RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRD 124 (192)
T ss_pred EEEEEEeeccchHHHhhhhHhhh-cccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccc
Confidence 4667788888831 112233 36899999999987543321 0111 223456899999999764212222
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 174 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~ 174 (178)
.-++..++. +.|+.+||||||.+++--|-.|.
T Consensus 125 dg~kla~~y--~ipfmetsaktg~nvd~af~~ia 156 (192)
T KOG0083|consen 125 DGEKLAEAY--GIPFMETSAKTGFNVDLAFLAIA 156 (192)
T ss_pred hHHHHHHHH--CCCceeccccccccHhHHHHHHH
Confidence 222222322 46999999999999998776554
No 260
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.36 E-value=0.00042 Score=57.15 Aligned_cols=96 Identities=19% Similarity=0.167 Sum_probs=59.4
Q ss_pred CEEEEeCC---cchhhh------cccc-c--ccceEEEEEeCCCCCCCCc---CCC---CCCCceeEEEEecCCCCCchh
Q 030407 75 DLLLCESG---GDNLAA------NFSR-E--LADYIIYIIDVSGGDKIPR---KGG---PGITQADLLVINKTDLASAIG 136 (178)
Q Consensus 75 d~iiiEtt---G~~~~~------~~~~-~--~ad~~I~VvD~~~~~~~~~---~~~---~qi~~adiiviNK~Dl~~~~~ 136 (178)
|++.+|.. |+ +.. .+.+ . ..|-.++|+.+..++-... ++. +--...-+|++||+||+++
T Consensus 49 D~V~~~~~~~~g~-I~~i~~Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~-- 125 (301)
T COG1162 49 DRVVFEDENNNGV-IEKILPRKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDD-- 125 (301)
T ss_pred CeEEEecCCCcce-EEEEecccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcc--
Confidence 88888887 42 211 1111 1 1355677777766543211 110 1112235999999999988
Q ss_pred HhHH--HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 137 ADLA--VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 137 ~~~~--~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
++.+ +.....+.+ +.+++.+|+++++|+++|.+.+..
T Consensus 126 ~~~~~~~~~~~y~~~--gy~v~~~s~~~~~~~~~l~~~l~~ 164 (301)
T COG1162 126 EEAAVKELLREYEDI--GYPVLFVSAKNGDGLEELAELLAG 164 (301)
T ss_pred hHHHHHHHHHHHHhC--CeeEEEecCcCcccHHHHHHHhcC
Confidence 5544 333444433 579999999999999999998764
No 261
>PLN03126 Elongation factor Tu; Provisional
Probab=97.36 E-value=0.00055 Score=60.22 Aligned_cols=90 Identities=12% Similarity=0.112 Sum_probs=54.3
Q ss_pred CCCEEEEeCCcch--hhhccc-ccccceEEEEEeCCCCCCCCc-CCC---CCCCce-eEEEEecCCCCCchhHh-HH---
Q 030407 73 KADLLLCESGGDN--LAANFS-RELADYIIYIIDVSGGDKIPR-KGG---PGITQA-DLLVINKTDLASAIGAD-LA--- 140 (178)
Q Consensus 73 ~~d~iiiEttG~~--~~~~~~-~~~ad~~I~VvD~~~~~~~~~-~~~---~qi~~a-diiviNK~Dl~~~~~~~-~~--- 140 (178)
+..+.||.|.|-. +..+.. ...+|..++|+|+..+...+. .+. .....+ -++++||+|+++. ++ .+
T Consensus 143 ~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~--~~~~~~i~ 220 (478)
T PLN03126 143 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDD--EELLELVE 220 (478)
T ss_pred CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCH--HHHHHHHH
Confidence 5578999999931 111111 124699999999987753321 111 112334 3678999999874 32 22
Q ss_pred -HHHHHHHhc--C-CCCCEEEEecccCC
Q 030407 141 -VMERDALRM--R-DGGPFIFAQVGWVI 164 (178)
Q Consensus 141 -~~~~~l~~~--n-p~a~i~~~SA~~g~ 164 (178)
++.+.++.. + ...+++++||.+|.
T Consensus 221 ~~i~~~l~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 221 LEVRELLSSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred HHHHHHHHhcCCCcCcceEEEEEccccc
Confidence 344445443 1 25799999999884
No 262
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.34 E-value=0.00018 Score=57.70 Aligned_cols=102 Identities=17% Similarity=0.099 Sum_probs=52.3
Q ss_pred CCCEEEEeCCcchhhhcc-------------cccccceEEEEEeCCCCCCCCcCCC---------CCCCceeEEEEecCC
Q 030407 73 KADLLLCESGGDNLAANF-------------SRELADYIIYIIDVSGGDKIPRKGG---------PGITQADLLVINKTD 130 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~~~-------------~~~~ad~~I~VvD~~~~~~~~~~~~---------~qi~~adiiviNK~D 130 (178)
+.+|+++.|.|- ...| .....-.+++++|+....+...... -.++.+-+.|+||+|
T Consensus 90 ~~~y~l~DtPGQ--iElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~D 167 (238)
T PF03029_consen 90 EDDYLLFDTPGQ--IELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKID 167 (238)
T ss_dssp H-SEEEEE--SS--HHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GG
T ss_pred CCcEEEEeCCCC--EEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccC
Confidence 459999999993 2111 1112346889999876543211100 024678899999999
Q ss_pred CCCchh-HhH-----------------HHHHHHHHhc---CCCC-CEEEEecccCCCHHHHHHHHhhh
Q 030407 131 LASAIG-ADL-----------------AVMERDALRM---RDGG-PFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 131 l~~~~~-~~~-----------------~~~~~~l~~~---np~a-~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+.++.. ..+ ..+.+.+.+. .... ++++.|+++++|+++|+..+++.
T Consensus 168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 998310 000 1111222222 1334 89999999999999999998865
No 263
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.29 E-value=0.00041 Score=58.35 Aligned_cols=92 Identities=16% Similarity=0.199 Sum_probs=56.3
Q ss_pred CCCEEEEeCCcchhhhcccc------cccceEEEEEeCCCCCCCCc-CCC---CCCCc-eeEEEEecCCCCCchhHhHHH
Q 030407 73 KADLLLCESGGDNLAANFSR------ELADYIIYIIDVSGGDKIPR-KGG---PGITQ-ADLLVINKTDLASAIGADLAV 141 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~~~~~------~~ad~~I~VvD~~~~~~~~~-~~~---~qi~~-adiiviNK~Dl~~~~~~~~~~ 141 (178)
+=++|+..|.|- ..|.+ .-+|..|++||+..|...+. .+. ..+.. --++.+||+||++...+.-++
T Consensus 85 KRkFIiADTPGH---eQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~ 161 (431)
T COG2895 85 KRKFIIADTPGH---EQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEA 161 (431)
T ss_pred cceEEEecCCcH---HHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHH
Confidence 447899999992 12221 12589999999987753322 111 11222 247889999999873222222
Q ss_pred ----HHHHHHhcC-CCCCEEEEecccCCCHH
Q 030407 142 ----MERDALRMR-DGGPFIFAQVGWVIGII 167 (178)
Q Consensus 142 ----~~~~l~~~n-p~a~i~~~SA~~g~gi~ 167 (178)
+..+.+++. ....++++||+.|.++-
T Consensus 162 I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 162 IVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 333334443 23589999999999874
No 264
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.00014 Score=54.14 Aligned_cols=99 Identities=17% Similarity=0.124 Sum_probs=61.8
Q ss_pred CCCEEEEeCCcc----hhhhcccccccceEEEEEeCCCCCCC---CcCCCC--C---CCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGD----NLAANFSRELADYIIYIIDVSGGDKI---PRKGGP--G---ITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~----~~~~~~~~~~ad~~I~VvD~~~~~~~---~~~~~~--q---i~~adiiviNK~Dl~~~~~~~~~ 140 (178)
+...=+..|.|- ++...|++ .++.+|.|.|.+-.+.. ++...+ + -+.--|+|.||+|+.+.. +-.+
T Consensus 55 kiklqiwdtagqerfrsitqsyyr-sahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drr-evp~ 132 (213)
T KOG0095|consen 55 KIKLQIWDTAGQERFRSITQSYYR-SAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRR-EVPQ 132 (213)
T ss_pred EEEEEEeeccchHHHHHHHHHHhh-hcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhh-hhhH
Confidence 566778889993 23344444 57999999998754432 111111 1 112259999999998652 2222
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 174 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~ 174 (178)
++-+...+. ....+++|||+..++++.||..+.
T Consensus 133 qigeefs~~-qdmyfletsakea~nve~lf~~~a 165 (213)
T KOG0095|consen 133 QIGEEFSEA-QDMYFLETSAKEADNVEKLFLDLA 165 (213)
T ss_pred HHHHHHHHh-hhhhhhhhcccchhhHHHHHHHHH
Confidence 333333222 345788999999999999997653
No 265
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.23 E-value=0.00096 Score=53.35 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=37.9
Q ss_pred CCCEEEEeCCcch-hh---hcccccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCC
Q 030407 73 KADLLLCESGGDN-LA---ANFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLAS 133 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~---~~~~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~ 133 (178)
+..+.+++|.|.. .. ..+ ...+|.+++|+|+..+...... .......+-++++||+|+..
T Consensus 63 ~~~i~liDTPG~~~f~~~~~~~-l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~ 130 (237)
T cd04168 63 DTKVNLIDTPGHMDFIAEVERS-LSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAG 130 (237)
T ss_pred CEEEEEEeCCCccchHHHHHHH-HHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccC
Confidence 5788999999931 01 111 1246999999999886432110 01112345699999999975
No 266
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.22 E-value=0.0028 Score=55.24 Aligned_cols=101 Identities=15% Similarity=0.146 Sum_probs=63.4
Q ss_pred CCCEEEEeCCcchhhhc---ccc--cccceEEEEEeCCCCCCCCcCCCC----CCCceeEEEEecCCCCCchhHh-HHHH
Q 030407 73 KADLLLCESGGDNLAAN---FSR--ELADYIIYIIDVSGGDKIPRKGGP----GITQADLLVINKTDLASAIGAD-LAVM 142 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~~---~~~--~~ad~~I~VvD~~~~~~~~~~~~~----qi~~adiiviNK~Dl~~~~~~~-~~~~ 142 (178)
+.-+=+|.|.| .+.. ..+ ...|+++++||+.+|...+.++-- -....-|+|+||+|..++.+++ ..++
T Consensus 67 ~~~INIvDTPG--HADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~v 144 (603)
T COG1217 67 GTRINIVDTPG--HADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEV 144 (603)
T ss_pred CeEEEEecCCC--cCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHH
Confidence 45666888999 3211 111 236999999999998866544321 1223459999999998764333 2333
Q ss_pred HHHHHhcCC-----CCCEEEEecccCC----------CHHHHHHHHhh
Q 030407 143 ERDALRMRD-----GGPFIFAQVGWVI----------GIIFTLSITHY 175 (178)
Q Consensus 143 ~~~l~~~np-----~a~i~~~SA~~g~----------gi~el~~~l~~ 175 (178)
....-++.. .-|+++.||+.|. .+..||+.|.+
T Consensus 145 fDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~ 192 (603)
T COG1217 145 FDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILD 192 (603)
T ss_pred HHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHH
Confidence 333333332 2489999998763 56777877654
No 267
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.22 E-value=0.00095 Score=55.88 Aligned_cols=80 Identities=18% Similarity=0.108 Sum_probs=53.0
Q ss_pred ceEEEEEeCCCCCCCC------------cCCC-CCCCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEeccc
Q 030407 96 DYIIYIIDVSGGDKIP------------RKGG-PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGW 162 (178)
Q Consensus 96 d~~I~VvD~~~~~~~~------------~~~~-~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~ 162 (178)
..++.|+|.+..+... ..|. .....+-+||+||+|++.+. ++.+.+.+.+.+.......+++||.+
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~-e~~~~~~~~l~~~~~~~~~~~ISa~t 317 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE-EELEELKKALAEALGWEVFYLISALT 317 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCH-HHHHHHHHHHHHhcCCCcceeeehhc
Confidence 3577889987544210 0121 22456779999999954331 67777777777554443333499999
Q ss_pred CCCHHHHHHHHhhh
Q 030407 163 VIGIIFTLSITHYI 176 (178)
Q Consensus 163 g~gi~el~~~l~~~ 176 (178)
++|+++|...+.++
T Consensus 318 ~~g~~~L~~~~~~~ 331 (369)
T COG0536 318 REGLDELLRALAEL 331 (369)
T ss_pred ccCHHHHHHHHHHH
Confidence 99999999877654
No 268
>PRK12740 elongation factor G; Reviewed
Probab=97.21 E-value=0.001 Score=60.74 Aligned_cols=63 Identities=16% Similarity=0.176 Sum_probs=39.7
Q ss_pred CCCCEEEEeCCcch-h-hhcc-cccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCc
Q 030407 72 FKADLLLCESGGDN-L-AANF-SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 134 (178)
Q Consensus 72 ~~~d~iiiEttG~~-~-~~~~-~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~ 134 (178)
.++++.+|.|.|.. . .... ....+|.+++|+|++.+...... .......+.++|+||+|+...
T Consensus 58 ~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 58 KGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGA 127 (668)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 36889999999931 1 0111 11246999999999876532211 111134567999999998754
No 269
>COG2229 Predicted GTPase [General function prediction only]
Probab=97.20 E-value=0.0014 Score=50.29 Aligned_cols=99 Identities=17% Similarity=-0.005 Sum_probs=66.9
Q ss_pred CCEEEEeCCcchhhhcccc----cccceEEEEEeCCCCCCCCcC----CCCCCC-ceeEEEEecCCCCCchhHhHHHHHH
Q 030407 74 ADLLLCESGGDNLAANFSR----ELADYIIYIIDVSGGDKIPRK----GGPGIT-QADLLVINKTDLASAIGADLAVMER 144 (178)
Q Consensus 74 ~d~iiiEttG~~~~~~~~~----~~ad~~I~VvD~~~~~~~~~~----~~~qi~-~adiiviNK~Dl~~~~~~~~~~~~~ 144 (178)
.-+=+.-|.| ..+..|.+ ..+.+.|++||.+.+....+. +-.... .+-+|.+||.||.+. -..+++++
T Consensus 68 ~~v~LfgtPG-q~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a--~ppe~i~e 144 (187)
T COG2229 68 TGVHLFGTPG-QERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDA--LPPEKIRE 144 (187)
T ss_pred ceEEEecCCC-cHHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCC--CCHHHHHH
Confidence 4455556777 22222222 247899999999887654111 001111 466899999999887 55567777
Q ss_pred HHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 145 DALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 145 ~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
.+..-+-..+++.++|.+++|..+.++.++.
T Consensus 145 ~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~ 175 (187)
T COG2229 145 ALKLELLSVPVIEIDATEGEGARDQLDVLLL 175 (187)
T ss_pred HHHhccCCCceeeeecccchhHHHHHHHHHh
Confidence 7765545679999999999999999987764
No 270
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.00032 Score=54.86 Aligned_cols=101 Identities=13% Similarity=0.028 Sum_probs=63.7
Q ss_pred hCCCCEEEEeCCcc----hhhhcccccccceEEEEEeCCCCCCCC---cCCCC-----CCCceeEEEEecCCCCCchhHh
Q 030407 71 LFKADLLLCESGGD----NLAANFSRELADYIIYIIDVSGGDKIP---RKGGP-----GITQADLLVINKTDLASAIGAD 138 (178)
Q Consensus 71 ~~~~d~iiiEttG~----~~~~~~~~~~ad~~I~VvD~~~~~~~~---~~~~~-----qi~~adiiviNK~Dl~~~~~~~ 138 (178)
...+...|..|.|. ++.+.|+ .++-+.+.|+|.+...... +++.+ .-...-++|.||+||..-....
T Consensus 60 ~k~vkaqIWDTAGQERyrAitSaYY-rgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~ 138 (222)
T KOG0087|consen 60 GKTVKAQIWDTAGQERYRAITSAYY-RGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVP 138 (222)
T ss_pred CcEEEEeeecccchhhhccccchhh-cccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccc
Confidence 34578899999994 1223344 3788999999998754322 11111 1234568999999997521011
Q ss_pred HHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHh
Q 030407 139 LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 174 (178)
Q Consensus 139 ~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~ 174 (178)
.+..+...+. ..-.+++|||+.+.++++.|+.+.
T Consensus 139 te~~k~~Ae~--~~l~f~EtSAl~~tNVe~aF~~~l 172 (222)
T KOG0087|consen 139 TEDGKAFAEK--EGLFFLETSALDATNVEKAFERVL 172 (222)
T ss_pred hhhhHhHHHh--cCceEEEecccccccHHHHHHHHH
Confidence 2233333322 245899999999999999997654
No 271
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.11 E-value=0.0002 Score=64.47 Aligned_cols=98 Identities=16% Similarity=0.158 Sum_probs=64.3
Q ss_pred CCCEEEEeCCcc-hh---------hhcccc-cccceEEEEEeCCCCCCCCcCCCC---CCCceeEEEEecCCCCCchh--
Q 030407 73 KADLLLCESGGD-NL---------AANFSR-ELADYIIYIIDVSGGDKIPRKGGP---GITQADLLVINKTDLASAIG-- 136 (178)
Q Consensus 73 ~~d~iiiEttG~-~~---------~~~~~~-~~ad~~I~VvD~~~~~~~~~~~~~---qi~~adiiviNK~Dl~~~~~-- 136 (178)
+-++=+|...|. ++ +..|.. ...|.+|.|+|+++-+.... ..- .+..+-++++|++|.+...+
T Consensus 49 ~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLy-ltlQLlE~g~p~ilaLNm~D~A~~~Gi~ 127 (653)
T COG0370 49 GHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNLY-LTLQLLELGIPMILALNMIDEAKKRGIR 127 (653)
T ss_pred CceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHHH-HHHHHHHcCCCeEEEeccHhhHHhcCCc
Confidence 456788888884 11 111211 23599999999987543211 011 14556799999999875521
Q ss_pred HhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 137 ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 137 ~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
-+.+++.+.+ +.|+++|||++|+|++++.+.+.+.
T Consensus 128 ID~~~L~~~L-----GvPVv~tvA~~g~G~~~l~~~i~~~ 162 (653)
T COG0370 128 IDIEKLSKLL-----GVPVVPTVAKRGEGLEELKRAIIEL 162 (653)
T ss_pred ccHHHHHHHh-----CCCEEEEEeecCCCHHHHHHHHHHh
Confidence 2233444333 5799999999999999999987654
No 272
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.09 E-value=0.00084 Score=54.75 Aligned_cols=89 Identities=10% Similarity=-0.013 Sum_probs=52.5
Q ss_pred CCCEEEEeCCcch-hh-hcc-cccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCchh-HhHHHHHH
Q 030407 73 KADLLLCESGGDN-LA-ANF-SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIG-ADLAVMER 144 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~-~~~-~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~~-~~~~~~~~ 144 (178)
+..+.||.|.|.. .. ... ....+|.+++|+|+..+...... .......+-++++||+|+.+... ..++.+++
T Consensus 63 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~ 142 (270)
T cd01886 63 DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIRE 142 (270)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHH
Confidence 5788999999931 11 111 11246999999999886533211 11123456799999999975411 12334444
Q ss_pred HHHhcCCCCCEEEEeccc
Q 030407 145 DALRMRDGGPFIFAQVGW 162 (178)
Q Consensus 145 ~l~~~np~a~i~~~SA~~ 162 (178)
.++ ..+...++++|+..
T Consensus 143 ~l~-~~~~~~~~Pisa~~ 159 (270)
T cd01886 143 KLG-ANPVPLQLPIGEED 159 (270)
T ss_pred HhC-CCceEEEeccccCC
Confidence 433 23556778888763
No 273
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.0018 Score=59.06 Aligned_cols=103 Identities=17% Similarity=0.070 Sum_probs=63.9
Q ss_pred CCCEEEEeCCcc----hhhhcccccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCC-----ch----
Q 030407 73 KADLLLCESGGD----NLAANFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLAS-----AI---- 135 (178)
Q Consensus 73 ~~d~iiiEttG~----~~~~~~~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~-----~~---- 135 (178)
-|-.++|.|.|- ++..... .+-|..|.|+|..+|.+.+.. ..+.-..+=||.+||+|..= +.
T Consensus 539 vPg~lvIdtpghEsFtnlRsrgs-slC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~ 617 (1064)
T KOG1144|consen 539 VPGLLVIDTPGHESFTNLRSRGS-SLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIV 617 (1064)
T ss_pred CCeeEEecCCCchhhhhhhhccc-cccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHH
Confidence 478999999992 1221111 245889999999999765431 11222345699999999851 10
Q ss_pred -------hHhHHHHHHHHHh---------cC-----------CCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 136 -------GADLAVMERDALR---------MR-----------DGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 136 -------~~~~~~~~~~l~~---------~n-----------p~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+.....+..++.. +| ....+++|||.+|+||..|+-+|..+
T Consensus 618 ~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~l 685 (1064)
T KOG1144|consen 618 EALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQL 685 (1064)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHH
Confidence 0111222222221 22 12478999999999999999887654
No 274
>PRK12739 elongation factor G; Reviewed
Probab=97.03 E-value=0.0014 Score=60.10 Aligned_cols=62 Identities=13% Similarity=0.140 Sum_probs=39.0
Q ss_pred CCCEEEEeCCcch-h-hhccc-ccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCc
Q 030407 73 KADLLLCESGGDN-L-AANFS-RELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 134 (178)
Q Consensus 73 ~~d~iiiEttG~~-~-~~~~~-~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~ 134 (178)
+..+.||.|.|.. . ..... ...+|++++|+|+..+...+.. +......+-++++||+|+.++
T Consensus 72 ~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 72 GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 5778999999931 0 11111 1236999999999887543221 111123456999999999854
No 275
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.02 E-value=0.0015 Score=49.38 Aligned_cols=101 Identities=16% Similarity=0.140 Sum_probs=64.0
Q ss_pred CCCCEEEEeCCcchhhhccc---ccccceEEEEEeCCCCCCCCcC--------CCCCCC-ceeEEEEecCCCCCchhHhH
Q 030407 72 FKADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDKIPRK--------GGPGIT-QADLLVINKTDLASAIGADL 139 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~~~~~---~~~ad~~I~VvD~~~~~~~~~~--------~~~qi~-~adiiviNK~Dl~~~~~~~~ 139 (178)
..+...+.+--|..--..|. +..+|+.|+|+|.++....+.. ..+++. .+-+|+.||.|+.+. -..
T Consensus 58 ~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~--l~~ 135 (185)
T KOG0073|consen 58 KGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA--LSL 135 (185)
T ss_pred cceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc--cCH
Confidence 46778888877731112222 1346999999999764322210 123333 478999999999865 333
Q ss_pred HHHH--HHHHhcC--CCCCEEEEecccCCCHHHHHHHHh
Q 030407 140 AVME--RDALRMR--DGGPFIFAQVGWVIGIIFTLSITH 174 (178)
Q Consensus 140 ~~~~--~~l~~~n--p~a~i~~~SA~~g~gi~el~~~l~ 174 (178)
+.+. -.+.++. .+.+++.+||.+|+++.+=+++|-
T Consensus 136 ~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~ 174 (185)
T KOG0073|consen 136 EEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLC 174 (185)
T ss_pred HHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHH
Confidence 3333 2233442 356999999999998888888764
No 276
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=96.98 E-value=0.0013 Score=52.14 Aligned_cols=59 Identities=22% Similarity=0.177 Sum_probs=37.3
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCC
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLA 132 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~ 132 (178)
++.+.|+.|.|.. ....+ ...+|++++|+|+..+...+.. .......+-++++||+|+.
T Consensus 72 ~~~i~iiDTPG~~~f~~~~~~~-l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 72 EYLINLIDSPGHVDFSSEVTAA-LRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred ceEEEEECCCCccccHHHHHHH-HHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 5667889999931 11111 1357999999999887543211 0011223569999999986
No 277
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=96.93 E-value=0.0051 Score=52.54 Aligned_cols=98 Identities=11% Similarity=0.132 Sum_probs=61.3
Q ss_pred EEEEeCCcch--hhhccc---ccccceEEEEEeCCCCCCCCcC-CC---CCCCceeEEEEecCCCCCchhHhHHHHHHHH
Q 030407 76 LLLCESGGDN--LAANFS---RELADYIIYIIDVSGGDKIPRK-GG---PGITQADLLVINKTDLASAIGADLAVMERDA 146 (178)
Q Consensus 76 ~iiiEttG~~--~~~~~~---~~~ad~~I~VvD~~~~~~~~~~-~~---~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l 146 (178)
+-|+.|.|-- +..+.. -...|..+++|-+.++.....+ +. .-++.+.+++++|+|+.+. +..+.+.+.+
T Consensus 203 VsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~d--dr~~~v~~ei 280 (527)
T COG5258 203 VSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPD--DRFQGVVEEI 280 (527)
T ss_pred EEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCcH--HHHHHHHHHH
Confidence 5577888810 111111 0124778888888777544321 11 2367889999999999987 5544433333
Q ss_pred Hh----cC--C---------------------CCCEEEEecccCCCHHHHHHHHhh
Q 030407 147 LR----MR--D---------------------GGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 147 ~~----~n--p---------------------~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
.+ .+ | -+|||.||+-||+|++-|.+++..
T Consensus 281 ~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~ 336 (527)
T COG5258 281 SALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL 336 (527)
T ss_pred HHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence 22 11 1 249999999999999988877653
No 278
>PRK13351 elongation factor G; Reviewed
Probab=96.90 E-value=0.0027 Score=58.22 Aligned_cols=61 Identities=18% Similarity=0.204 Sum_probs=39.0
Q ss_pred CCCEEEEeCCcch-hh---hcccccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCc
Q 030407 73 KADLLLCESGGDN-LA---ANFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 134 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~---~~~~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~ 134 (178)
+..+.|+.|.|.. .. ..+ ...+|++++|+|++.+...... .......+-++++||+|+...
T Consensus 72 ~~~i~liDtPG~~df~~~~~~~-l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 72 NHRINLIDTPGHIDFTGEVERS-LRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGA 140 (687)
T ss_pred CEEEEEEECCCcHHHHHHHHHH-HHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCC
Confidence 5678999999931 11 111 1246999999999876543211 111123467999999999754
No 279
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.0041 Score=46.01 Aligned_cols=96 Identities=17% Similarity=0.141 Sum_probs=57.5
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--------CCCCCCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--------KGGPGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--------~~~~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
+...-+.+|.|-. +...+.+ .+.+.+.|.|.++...... +.......+-+++.||.||-+......+
T Consensus 59 kiklqiwdtagqerfravtrsyyr-gaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~ye 137 (215)
T KOG0097|consen 59 KIKLQIWDTAGQERFRAVTRSYYR-GAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYE 137 (215)
T ss_pred EEEEEEeecccHHHHHHHHHHHhc-cccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHH
Confidence 4555566666621 1123333 5778899999876432210 0011123456888999999765323334
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHH
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLS 171 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~ 171 (178)
+..++.++ | +.-+++.|||+|+++++-|-
T Consensus 138 eak~faee-n-gl~fle~saktg~nvedafl 166 (215)
T KOG0097|consen 138 EAKEFAEE-N-GLMFLEASAKTGQNVEDAFL 166 (215)
T ss_pred HHHHHHhh-c-CeEEEEecccccCcHHHHHH
Confidence 44544443 2 45789999999999988663
No 280
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=96.83 E-value=0.00074 Score=54.69 Aligned_cols=97 Identities=13% Similarity=0.109 Sum_probs=55.4
Q ss_pred CCCEEEEeCCcch-hh-hcc-cccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCchhHhHHHHHHH
Q 030407 73 KADLLLCESGGDN-LA-ANF-SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERD 145 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~-~~~-~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~ 145 (178)
+.++.+|.|.|.. .. ... ....+|.+++|+|++.+...... .......+-++++||+|+... ..+...+.
T Consensus 63 ~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~---~~~~~~~~ 139 (268)
T cd04170 63 GHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERA---DFDKTLAA 139 (268)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCC---CHHHHHHH
Confidence 5788999999931 11 111 11246999999999876543211 112234567999999999865 23334444
Q ss_pred HHhcCCCCCEEEE--ecccCCCHHHHHHHH
Q 030407 146 ALRMRDGGPFIFA--QVGWVIGIIFTLSIT 173 (178)
Q Consensus 146 l~~~np~a~i~~~--SA~~g~gi~el~~~l 173 (178)
+++... .+++++ +.++|.++..+.+.+
T Consensus 140 l~~~~~-~~~~~~~ip~~~~~~~~~~vd~~ 168 (268)
T cd04170 140 LQEAFG-RPVVPLQLPIGEGDDFKGVVDLL 168 (268)
T ss_pred HHHHhC-CCeEEEEecccCCCceeEEEEcc
Confidence 554322 234433 456666655444433
No 281
>COG1084 Predicted GTPase [General function prediction only]
Probab=96.83 E-value=0.0031 Score=52.55 Aligned_cols=99 Identities=19% Similarity=0.125 Sum_probs=64.6
Q ss_pred CCEEEEeCCcchhhhc-------------ccccccceEEEEEeCCCCCCCCc----C----CCCCCCceeEEEEecCCCC
Q 030407 74 ADLLLCESGGDNLAAN-------------FSRELADYIIYIIDVSGGDKIPR----K----GGPGITQADLLVINKTDLA 132 (178)
Q Consensus 74 ~d~iiiEttG~~~~~~-------------~~~~~ad~~I~VvD~~~~~~~~~----~----~~~qi~~adiiviNK~Dl~ 132 (178)
+-|=+|.|.|+ +-.| ....+.+.+++++|++..-.+.. . ..+.+..+-++|+||+|+.
T Consensus 215 ~R~QvIDTPGl-LDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~ 293 (346)
T COG1084 215 LRIQVIDTPGL-LDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIA 293 (346)
T ss_pred ceEEEecCCcc-cCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 35678999994 2111 11234688999999976322211 0 1122455679999999999
Q ss_pred CchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 133 SAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 133 ~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+. +.++++...+.... .-.....++..+.|++.+.+.+.+.
T Consensus 294 ~~--e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 294 DE--EKLEEIEASVLEEG-GEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred ch--hHHHHHHHHHHhhc-cccccceeeeehhhHHHHHHHHHHH
Confidence 88 77777776665432 2235677888899999888766554
No 282
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=96.80 E-value=0.0033 Score=48.91 Aligned_cols=101 Identities=13% Similarity=0.028 Sum_probs=62.9
Q ss_pred CCCEEEEeCCcc----hhhhcccccccceEEEEEeCCCCCCCCc--CCCCC-------CCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGD----NLAANFSRELADYIIYIIDVSGGDKIPR--KGGPG-------ITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~----~~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~~q-------i~~adiiviNK~Dl~~~~~~~~ 139 (178)
....-|+.|.|. .+...+. ...++.++|++.++...... .+..+ -..+-++|.||+|+........
T Consensus 50 ~~~l~ilDt~g~~~~~~~~~~~~-~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~ 128 (196)
T KOG0395|consen 50 VCMLEILDTAGQEEFSAMRDLYI-RNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSE 128 (196)
T ss_pred EEEEEEEcCCCcccChHHHHHhh-ccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCH
Confidence 355568889881 1111122 23589999999987543211 00011 1257799999999986311233
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+...+..+.+ ..+++++||+...+++++|..|.+.
T Consensus 129 eeg~~la~~~--~~~f~E~Sak~~~~v~~~F~~L~r~ 163 (196)
T KOG0395|consen 129 EEGKALARSW--GCAFIETSAKLNYNVDEVFYELVRE 163 (196)
T ss_pred HHHHHHHHhc--CCcEEEeeccCCcCHHHHHHHHHHH
Confidence 3334444443 3469999999999999999987664
No 283
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.78 E-value=0.006 Score=52.29 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=56.1
Q ss_pred CCCEEEEeCCcchhhh----cc-cccccceEEEEEeCCCCCCCC-cCCCCC----------CC-ceeEEEEecCCCCCch
Q 030407 73 KADLLLCESGGDNLAA----NF-SRELADYIIYIIDVSGGDKIP-RKGGPG----------IT-QADLLVINKTDLASAI 135 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~----~~-~~~~ad~~I~VvD~~~~~~~~-~~~~~q----------i~-~adiiviNK~Dl~~~~ 135 (178)
.+-+=++.+.| ... +. ...-+|..|+|+|+..+.... .....| +. .--||++||.|+++..
T Consensus 84 k~~~tIiDaPG--HrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wd 161 (428)
T COG5256 84 KYNFTIIDAPG--HRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWD 161 (428)
T ss_pred CceEEEeeCCc--hHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccC
Confidence 45677888888 221 11 112369999999998763110 011112 11 1248899999999753
Q ss_pred hHhHHHHHHHHHh------cCC-CCCEEEEecccCCCHHH
Q 030407 136 GADLAVMERDALR------MRD-GGPFIFAQVGWVIGIIF 168 (178)
Q Consensus 136 ~~~~~~~~~~l~~------~np-~a~i~~~SA~~g~gi~e 168 (178)
.+..+++.+.+.. .+| ..+++++||.+|+++.+
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 2333444433332 234 36899999999999865
No 284
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.0045 Score=47.42 Aligned_cols=102 Identities=17% Similarity=0.152 Sum_probs=63.4
Q ss_pred CCCEEEEeCCcch-hh---hcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDN-LA---ANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~---~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
+...-+.+-.|-. +. .+|. ...+++|+|||.++.+.... ..+..-..+-++..||-|+..+ -..
T Consensus 60 n~~f~vWDvGGq~k~R~lW~~Y~-~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a--ls~ 136 (181)
T KOG0070|consen 60 NISFTVWDVGGQEKLRPLWKHYF-QNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA--LSA 136 (181)
T ss_pred ceEEEEEecCCCcccccchhhhc-cCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc--CCH
Confidence 4566677777721 11 2222 24689999999987643321 1111112356888999999866 333
Q ss_pred HHHHHHHH--hcC-CCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 140 AVMERDAL--RMR-DGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 140 ~~~~~~l~--~~n-p~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
.++.+.+. ++. ..-.+-.++|.+|+|+.|-++++...+
T Consensus 137 ~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~ 177 (181)
T KOG0070|consen 137 AEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNL 177 (181)
T ss_pred HHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHH
Confidence 33333332 232 234778899999999999999987654
No 285
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=96.73 E-value=0.0056 Score=54.53 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=38.7
Q ss_pred CCCEEEEeCCcch-hhh-cc-cccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCc
Q 030407 73 KADLLLCESGGDN-LAA-NF-SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 134 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~~-~~-~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~ 134 (178)
+..+-++.|.|.. ... +. ....+|++|+|+|++.+...... .......+-++++||+|+...
T Consensus 78 ~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 78 DCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred CEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCccccc
Confidence 5678899999931 111 11 11246999999999876432210 111234567999999998753
No 286
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=96.73 E-value=0.0036 Score=48.72 Aligned_cols=97 Identities=11% Similarity=-0.027 Sum_probs=58.9
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
+..+-+++|.|.. +...+. ..++.+++++|.++...... ...+ ..+-++++||+|+.+. ...
T Consensus 57 ~i~i~~~Dt~g~~~~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~i~lv~nK~Dl~~~--~~~ 131 (215)
T PTZ00132 57 PICFNVWDTAGQEKFGGLRDGYY-IKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE--NIPIVLVGNKVDVKDR--QVK 131 (215)
T ss_pred EEEEEEEECCCchhhhhhhHHHh-ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCEEEEEECccCccc--cCC
Confidence 4566778888831 111122 24688999999976432210 0111 1245788999998654 221
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
....+..+.. ..+++++||++|.|+++.|.+|.+.
T Consensus 132 ~~~~~~~~~~--~~~~~e~Sa~~~~~v~~~f~~ia~~ 166 (215)
T PTZ00132 132 ARQITFHRKK--NLQYYDISAKSNYNFEKPFLWLARR 166 (215)
T ss_pred HHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 2222333332 3589999999999999999877653
No 287
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=96.67 E-value=0.0068 Score=50.12 Aligned_cols=73 Identities=15% Similarity=0.111 Sum_probs=48.5
Q ss_pred ceEEEEEeCCCCCCCCcC----CCCCCCc-eeEEEEecCCCCCchhHhHHHHHHHHHhc-----CC--CCCEEEEeccc-
Q 030407 96 DYIIYIIDVSGGDKIPRK----GGPGITQ-ADLLVINKTDLASAIGADLAVMERDALRM-----RD--GGPFIFAQVGW- 162 (178)
Q Consensus 96 d~~I~VvD~~~~~~~~~~----~~~qi~~-adiiviNK~Dl~~~~~~~~~~~~~~l~~~-----np--~a~i~~~SA~~- 162 (178)
|..|+|+.+.++...+.+ ..+|+.. .-++++||+|+++.. +-++.++..++++ +| ..||+.-||+.
T Consensus 100 DgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~-ellelVemEvreLLs~y~f~gd~~Pii~gSal~a 178 (394)
T COG0050 100 DGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDE-ELLELVEMEVRELLSEYGFPGDDTPIIRGSALKA 178 (394)
T ss_pred CccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcH-HHHHHHHHHHHHHHHHcCCCCCCcceeechhhhh
Confidence 889999999998765432 3456665 357789999999851 4445455455544 34 46999999865
Q ss_pred CCCHHHH
Q 030407 163 VIGIIFT 169 (178)
Q Consensus 163 g~gi~el 169 (178)
.+|-+.|
T Consensus 179 le~~~~~ 185 (394)
T COG0050 179 LEGDAKW 185 (394)
T ss_pred hcCCcch
Confidence 4444333
No 288
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.64 E-value=0.007 Score=45.31 Aligned_cols=74 Identities=22% Similarity=0.222 Sum_probs=46.7
Q ss_pred HHHHHHhhcC-CcEEEEEecCC-Cch-----hHHHHHHcCCCCccceeecccCC-CcccccccccccCHhHHHhhHhhC-
Q 030407 2 LALCKFLRDK-YSLAAVTNDIF-TKE-----DGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNLF- 72 (178)
Q Consensus 2 ~~~~~~~~~~-~~vaVI~nd~g-~~i-----D~~li~~~~~~~~~~~~~l~~Gc-Cc~l~i~~dl~~~l~~l~~l~~~~- 72 (178)
.+++++++++ +|+|+|.++.+ ..+ |..++...|. ....+.++| ||... +......+ .++....
T Consensus 17 ~~l~~~l~~~G~~V~viK~~~~~~~~d~~~~D~~~~~~aga----~~v~~~~~~~~~~~~-~~~~~~~l---~~ll~~~~ 88 (155)
T TIGR00176 17 ERLVKALKARGYRVATIKHDHHDFDIDKNGKDSYRHREAGA----DQVIVASSRRYAFMH-ETQEERDL---EALLDRLP 88 (155)
T ss_pred HHHHHHHHhcCCeEEEEecccccccCCCccccHHHHHhCCC----CEEEEecCCeEEEEE-ecCCCcCH---HHHHhhCC
Confidence 5677777664 89999999877 544 4556665565 456777888 77431 11001233 3333222
Q ss_pred CCCEEEEeCCc
Q 030407 73 KADLLLCESGG 83 (178)
Q Consensus 73 ~~d~iiiEttG 83 (178)
.+|+||||.-+
T Consensus 89 ~~D~vlVEG~k 99 (155)
T TIGR00176 89 DLDIILVEGFK 99 (155)
T ss_pred CCCEEEECCCC
Confidence 48999999988
No 289
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.58 E-value=0.0062 Score=50.95 Aligned_cols=73 Identities=19% Similarity=0.097 Sum_probs=48.4
Q ss_pred cceEEEEEeCCCCCCCCcCC-CCC-CCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHH
Q 030407 95 ADYIIYIIDVSGGDKIPRKG-GPG-ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTL 170 (178)
Q Consensus 95 ad~~I~VvD~~~~~~~~~~~-~~q-i~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~ 170 (178)
.|.++-|+|+..+....... .+. -..+.++|+||+||++. ...++..+...+.+ ....+.+|++.+.+...+.
T Consensus 35 ~d~vvevvDar~P~~s~~~~l~~~v~~k~~i~vlNK~DL~~~--~~~~~W~~~~~~~~-~~~~~~v~~~~~~~~~~i~ 109 (322)
T COG1161 35 VDVVVEVVDARDPLGTRNPELERIVKEKPKLLVLNKADLAPK--EVTKKWKKYFKKEE-GIKPIFVSAKSRQGGKKIR 109 (322)
T ss_pred CCEEEEEEeccccccccCccHHHHHccCCcEEEEehhhcCCH--HHHHHHHHHHHhcC-CCccEEEEeecccCccchH
Confidence 59999999998776543211 111 12344999999999988 66555555555443 3456777888777766666
No 290
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=96.57 E-value=0.0046 Score=48.10 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=37.3
Q ss_pred CCCEEEEeCCcch-hhh---ccccccc-ceEEEEEeCCCCC-CCCc--CC------CCC---CCceeEEEEecCCCCCc
Q 030407 73 KADLLLCESGGDN-LAA---NFSRELA-DYIIYIIDVSGGD-KIPR--KG------GPG---ITQADLLVINKTDLASA 134 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~~---~~~~~~a-d~~I~VvD~~~~~-~~~~--~~------~~q---i~~adiiviNK~Dl~~~ 134 (178)
+..+-++++.|.. +.. .+.. .+ +++|+|+|+.... .... .+ ..+ -..+-+++.||.|+..+
T Consensus 47 ~~~~~l~D~pG~~~~~~~~~~~~~-~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 47 GKKFRLVDVPGHPKLRDKLLETLK-NSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred CceEEEEECCCCHHHHHHHHHHHh-ccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 5678899999932 111 1122 34 8999999998762 1111 00 001 14567999999999754
No 291
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=96.57 E-value=0.014 Score=43.60 Aligned_cols=81 Identities=19% Similarity=0.087 Sum_probs=55.0
Q ss_pred ccceEEEEEeCCCCCCCCc--------CCCC-CCCceeEEEEecCCCCCchhHhHHHHHHHHH--hcC-CCCCEEEEecc
Q 030407 94 LADYIIYIIDVSGGDKIPR--------KGGP-GITQADLLVINKTDLASAIGADLAVMERDAL--RMR-DGGPFIFAQVG 161 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~--------~~~~-qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~--~~n-p~a~i~~~SA~ 161 (178)
..+.++++||+.+++.... ...+ ....+-+++.||.|+.++ -....+..++. .+. ...-.|.+|++
T Consensus 88 ~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~~li~rmgL~sitdREvcC~siSck 165 (186)
T KOG0075|consen 88 GVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKIALIERMGLSSITDREVCCFSISCK 165 (186)
T ss_pred cCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccHHHHHHHhCccccccceEEEEEEEEc
Confidence 4688999999988654321 1122 345678999999999877 33334433332 111 12456899999
Q ss_pred cCCCHHHHHHHHhhh
Q 030407 162 WVIGIIFTLSITHYI 176 (178)
Q Consensus 162 ~g~gi~el~~~l~~~ 176 (178)
+..+|+.+.++|-+.
T Consensus 166 e~~Nid~~~~Wli~h 180 (186)
T KOG0075|consen 166 EKVNIDITLDWLIEH 180 (186)
T ss_pred CCccHHHHHHHHHHH
Confidence 999999999998654
No 292
>PRK00007 elongation factor G; Reviewed
Probab=96.56 E-value=0.0032 Score=57.81 Aligned_cols=88 Identities=10% Similarity=-0.002 Sum_probs=53.5
Q ss_pred CCCEEEEeCCcch--hhhccc-ccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCchhHhHHHHHHH
Q 030407 73 KADLLLCESGGDN--LAANFS-RELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERD 145 (178)
Q Consensus 73 ~~d~iiiEttG~~--~~~~~~-~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~ 145 (178)
+..+.||.|.|.. ...... ...+|++++|+|+..+...+.. +......+-++++||+|+.++ . ...+.+.
T Consensus 74 ~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~--~-~~~~~~~ 150 (693)
T PRK00007 74 DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGA--D-FYRVVEQ 150 (693)
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCC--C-HHHHHHH
Confidence 5789999999931 011111 1236999999999887543321 111233466999999999876 2 3334444
Q ss_pred HHhcC---CCCCEEEEecccC
Q 030407 146 ALRMR---DGGPFIFAQVGWV 163 (178)
Q Consensus 146 l~~~n---p~a~i~~~SA~~g 163 (178)
+++.. +.+.++++||.+|
T Consensus 151 i~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 151 IKDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred HHHHhCCCeeeEEecCccCCc
Confidence 44332 3356778888776
No 293
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=96.54 E-value=0.015 Score=44.09 Aligned_cols=111 Identities=17% Similarity=0.176 Sum_probs=69.4
Q ss_pred HhHHHhhHhhCCCCEEEEeCCcc----hhhhcccccccceEEEEEeCCCCCCCCc---C-----CCCC--CCceeEEEEe
Q 030407 62 LGPLEELSNLFKADLLLCESGGD----NLAANFSRELADYIIYIIDVSGGDKIPR---K-----GGPG--ITQADLLVIN 127 (178)
Q Consensus 62 l~~l~~l~~~~~~d~iiiEttG~----~~~~~~~~~~ad~~I~VvD~~~~~~~~~---~-----~~~q--i~~adiiviN 127 (178)
+..+.++...+....=+..|.|- ++...|++ ..=+++.|+|.++...... . ..-| -+.-=.+|..
T Consensus 46 farlie~~pg~riklqlwdtagqerfrsitksyyr-nsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGh 124 (213)
T KOG0091|consen 46 FARLIELRPGYRIKLQLWDTAGQERFRSITKSYYR-NSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGH 124 (213)
T ss_pred HHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhh-cccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEecc
Confidence 35555665445678889999993 23344444 3456889999987643211 0 0011 1112378899
Q ss_pred cCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 128 KTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 128 K~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
|+||.+..-...++.++..+. -+..+++|||++|.+++|-|..|.+
T Consensus 125 KsDL~SqRqVt~EEaEklAa~--hgM~FVETSak~g~NVeEAF~mlaq 170 (213)
T KOG0091|consen 125 KSDLQSQRQVTAEEAEKLAAS--HGMAFVETSAKNGCNVEEAFDMLAQ 170 (213)
T ss_pred ccchhhhccccHHHHHHHHHh--cCceEEEecccCCCcHHHHHHHHHH
Confidence 999987621223344444432 3568999999999999999886643
No 294
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=96.51 E-value=0.0054 Score=51.27 Aligned_cols=51 Identities=8% Similarity=-0.057 Sum_probs=37.5
Q ss_pred ceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHH-HHhh
Q 030407 120 QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS-ITHY 175 (178)
Q Consensus 120 ~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~-~l~~ 175 (178)
.+-++++||+|+.+. .+.. +.++...+..+++++||+.+.|+++|.+ .+.+
T Consensus 215 KPvI~VlNK~Dl~~~--~~~~---~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~ 266 (318)
T cd01899 215 KPMVIAANKADIPDA--ENNI---SKLRLKYPDEIVVPTSAEAELALRRAAKQGLIK 266 (318)
T ss_pred CcEEEEEEHHHccCh--HHHH---HHHHhhCCCCeEEEEeCcccccHHHHHHhhHHH
Confidence 467999999998755 3322 2333344567899999999999999997 4544
No 295
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=96.49 E-value=0.0095 Score=50.15 Aligned_cols=79 Identities=22% Similarity=0.224 Sum_probs=52.1
Q ss_pred ceEEEEEeCCCCCCCCcC----CCCCCCcee-EEEEecCCCCCchhHhHHHHHHHHHhcC-------CCCCEEEEeccc-
Q 030407 96 DYIIYIIDVSGGDKIPRK----GGPGITQAD-LLVINKTDLASAIGADLAVMERDALRMR-------DGGPFIFAQVGW- 162 (178)
Q Consensus 96 d~~I~VvD~~~~~~~~~~----~~~qi~~ad-iiviNK~Dl~~~~~~~~~~~~~~l~~~n-------p~a~i~~~SA~~- 162 (178)
|+.|+||.+++|...+.+ ..+|+...+ ++.+||.|++++. +.++-++-.+|++- ...||+.-||+-
T Consensus 142 DGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~-e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~A 220 (449)
T KOG0460|consen 142 DGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDP-EMLELVEMEIRELLSEFGFDGDNTPVIRGSALCA 220 (449)
T ss_pred CceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCH-HHHHHHHHHHHHHHHHcCCCCCCCCeeecchhhh
Confidence 789999999998765532 345665554 5669999999441 56666665566541 246999988853
Q ss_pred --C----CC---HHHHHHHHhh
Q 030407 163 --V----IG---IIFTLSITHY 175 (178)
Q Consensus 163 --g----~g---i~el~~~l~~ 175 (178)
| .| |.+|++.++.
T Consensus 221 Leg~~peig~~aI~kLldavDs 242 (449)
T KOG0460|consen 221 LEGRQPEIGLEAIEKLLDAVDS 242 (449)
T ss_pred hcCCCccccHHHHHHHHHHHhc
Confidence 3 23 5666665554
No 296
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=96.48 E-value=0.0056 Score=56.19 Aligned_cols=88 Identities=11% Similarity=0.028 Sum_probs=52.7
Q ss_pred CCCEEEEeCCcchh--hhc-ccccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCchhHhHHHHHHH
Q 030407 73 KADLLLCESGGDNL--AAN-FSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERD 145 (178)
Q Consensus 73 ~~d~iiiEttG~~~--~~~-~~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~ 145 (178)
+..+.|+.|.|..- ... .....+|.+++|+|+..+...+.. .......+-++++||+|+..+ . .....+.
T Consensus 74 ~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~--~-~~~~~~~ 150 (689)
T TIGR00484 74 GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGA--N-FLRVVNQ 150 (689)
T ss_pred CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCC--C-HHHHHHH
Confidence 57789999999420 000 011246999999999876543211 111234467999999999865 2 3333444
Q ss_pred HHhc---CCCCCEEEEecccC
Q 030407 146 ALRM---RDGGPFIFAQVGWV 163 (178)
Q Consensus 146 l~~~---np~a~i~~~SA~~g 163 (178)
+++. ++...++++|+++|
T Consensus 151 i~~~l~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 151 IKQRLGANAVPIQLPIGAEDN 171 (689)
T ss_pred HHHHhCCCceeEEeccccCCC
Confidence 4333 33345778888766
No 297
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=96.48 E-value=0.0099 Score=45.86 Aligned_cols=102 Identities=12% Similarity=-0.023 Sum_probs=57.3
Q ss_pred CCCEEEEeCCcchh----hhcc----cccccceEEEEEeCCCCCCCCcCCC---CCCCceeEEEEecCCCCCchh-----
Q 030407 73 KADLLLCESGGDNL----AANF----SRELADYIIYIIDVSGGDKIPRKGG---PGITQADLLVINKTDLASAIG----- 136 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~----~~~~ad~~I~VvD~~~~~~~~~~~~---~qi~~adiiviNK~Dl~~~~~----- 136 (178)
.+++.+++|.|..- ...+ .....|.++++.|. ........+. .......++|+||+|+..+..
T Consensus 51 ~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~-~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~ 129 (197)
T cd04104 51 FPNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST-RFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKP 129 (197)
T ss_pred CCCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC-CCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhcccc
Confidence 35789999999421 0111 11224666666443 2211111111 112345699999999964311
Q ss_pred ------HhHHHHHHHHHhcC-----CCCCEEEEecc--cCCCHHHHHHHHhh
Q 030407 137 ------ADLAVMERDALRMR-----DGGPFIFAQVG--WVIGIIFTLSITHY 175 (178)
Q Consensus 137 ------~~~~~~~~~l~~~n-----p~a~i~~~SA~--~g~gi~el~~~l~~ 175 (178)
.-++.+++.+.+.. +..+||.+|+. .+.|+..|.+.+..
T Consensus 130 ~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~ 181 (197)
T cd04104 130 RSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLK 181 (197)
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHH
Confidence 11334444444322 34699999998 68999999987654
No 298
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=96.45 E-value=0.0035 Score=54.78 Aligned_cols=104 Identities=21% Similarity=0.108 Sum_probs=61.8
Q ss_pred hCCCCEEEEeCCcchhhh-c-------------ccccccceEEEEEeCCCCCCCCc-C---------------CCCCCCc
Q 030407 71 LFKADLLLCESGGDNLAA-N-------------FSRELADYIIYIIDVSGGDKIPR-K---------------GGPGITQ 120 (178)
Q Consensus 71 ~~~~d~iiiEttG~~~~~-~-------------~~~~~ad~~I~VvD~~~~~~~~~-~---------------~~~qi~~ 120 (178)
-.++-+.++.|.|. .. . -....+|.+++|+|+........ + ...+.+.
T Consensus 313 ~~G~~v~L~DTAGi--Re~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~ 390 (531)
T KOG1191|consen 313 VNGVPVRLSDTAGI--REESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQ 390 (531)
T ss_pred cCCeEEEEEecccc--ccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEecccccc
Confidence 45788999999994 21 0 01123699999999954332111 0 0112345
Q ss_pred eeEEEEecCCCCCchhHhHHHHHHHHH-hcCCCCCEEE-EecccCCCHHHHHHHHhhh
Q 030407 121 ADLLVINKTDLASAIGADLAVMERDAL-RMRDGGPFIF-AQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 121 adiiviNK~Dl~~~~~~~~~~~~~~l~-~~np~a~i~~-~SA~~g~gi~el~~~l~~~ 176 (178)
.-+++.||+|+.++-+........+.. ...+.-++.. +|++||+|++.|.+.+.+.
T Consensus 391 ~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~ 448 (531)
T KOG1191|consen 391 RIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNI 448 (531)
T ss_pred ceEEEechhhccCccccccCCceeccccccCcccceEEEeeechhhhHHHHHHHHHHH
Confidence 679999999998761111110011111 1223334544 9999999999999987654
No 299
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=96.44 E-value=0.0063 Score=50.79 Aligned_cols=47 Identities=19% Similarity=0.112 Sum_probs=37.8
Q ss_pred ceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 120 QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 120 ~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
.+-++|+||+|+++. ++.+.+.+. | +.+++||++|.|+++|.+.+-+
T Consensus 240 ~p~l~v~NKiD~~~~--e~~~~l~~~-----~--~~v~isa~~~~nld~L~e~i~~ 286 (365)
T COG1163 240 KPALYVVNKIDLPGL--EELERLARK-----P--NSVPISAKKGINLDELKERIWD 286 (365)
T ss_pred eeeEEEEecccccCH--HHHHHHHhc-----c--ceEEEecccCCCHHHHHHHHHH
Confidence 457999999999987 666655432 2 7899999999999999987654
No 300
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.36 E-value=0.0088 Score=51.07 Aligned_cols=63 Identities=16% Similarity=0.128 Sum_probs=43.1
Q ss_pred cceEEEEEeCCCCCCCCc-CCCCCC-----CceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecc
Q 030407 95 ADYIIYIIDVSGGDKIPR-KGGPGI-----TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVG 161 (178)
Q Consensus 95 ad~~I~VvD~~~~~~~~~-~~~~qi-----~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~ 161 (178)
+|+++.|+||.++....- ...+++ ..--|+|+||+||++. +.++....+++.-.| .+.+.++.
T Consensus 147 sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPr--Ev~e~Wl~YLr~~~p--tv~fkast 215 (435)
T KOG2484|consen 147 SDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPR--EVVEKWLVYLRREGP--TVAFKAST 215 (435)
T ss_pred hheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCH--HHHHHHHHHHHhhCC--cceeeccc
Confidence 599999999988764421 111122 1235999999999999 888888888887666 44444333
No 301
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.22 E-value=0.0072 Score=53.11 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=45.6
Q ss_pred cceEEEEEeCCCCCCCCc----CC-CCCC-CceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEeccc
Q 030407 95 ADYIIYIIDVSGGDKIPR----KG-GPGI-TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGW 162 (178)
Q Consensus 95 ad~~I~VvD~~~~~~~~~----~~-~~qi-~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~ 162 (178)
.|.+|-+||+.++.-..- .| .+.. ..+.++++||+||+++ ++...-.++.+..| .++++-||.-
T Consensus 175 SDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~--~qr~aWa~YF~~~n--i~~vf~SA~~ 244 (562)
T KOG1424|consen 175 SDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPP--EQRVAWAEYFRQNN--IPVVFFSALA 244 (562)
T ss_pred cceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCH--HHHHHHHHHHHhcC--ceEEEEeccc
Confidence 599999999988643211 11 1222 3578999999999998 77777666666554 7888888865
No 302
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=96.08 E-value=0.014 Score=52.00 Aligned_cols=74 Identities=20% Similarity=0.096 Sum_probs=44.7
Q ss_pred cceEEEEEeCCCCCCC-CcCCCCCC----------C-ceeEEEEecCCCCCchhHhHHHHH----HHHHhc----CCCCC
Q 030407 95 ADYIIYIIDVSGGDKI-PRKGGPGI----------T-QADLLVINKTDLASAIGADLAVME----RDALRM----RDGGP 154 (178)
Q Consensus 95 ad~~I~VvD~~~~~~~-~~~~~~qi----------~-~adiiviNK~Dl~~~~~~~~~~~~----~~l~~~----np~a~ 154 (178)
+|..|+|+|++.+.-. .....+|. . ..-+|++||.|+++-.....+.+. .++++. -+...
T Consensus 279 aD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~ 358 (603)
T KOG0458|consen 279 ADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVK 358 (603)
T ss_pred cceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcc
Confidence 5899999999875321 11112221 1 235889999999975212333333 333221 13458
Q ss_pred EEEEecccCCCHHH
Q 030407 155 FIFAQVGWVIGIIF 168 (178)
Q Consensus 155 i~~~SA~~g~gi~e 168 (178)
++++|+.+|+|+-.
T Consensus 359 FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 359 FIPISGLSGENLIK 372 (603)
T ss_pred eEecccccCCcccc
Confidence 99999999999753
No 303
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.02 E-value=0.014 Score=50.68 Aligned_cols=145 Identities=17% Similarity=0.118 Sum_probs=75.8
Q ss_pred HHHHHhhc-CCcEEEEEecCC-C-chhHHHHH--HcCCCCccceeecccCCCcccccccccccC-HhHHHhhHhhCCCCE
Q 030407 3 ALCKFLRD-KYSLAAVTNDIF-T-KEDGEFLM--RNGALPEERIRAVETGGCPHAAIREDISIN-LGPLEELSNLFKADL 76 (178)
Q Consensus 3 ~~~~~~~~-~~~vaVI~nd~g-~-~iD~~li~--~~~~~~~~~~~~l~~GcCc~l~i~~dl~~~-l~~l~~l~~~~~~d~ 76 (178)
++..++++ ++||+++.-|.. . .++..... ..++ ++....++. |.... .+++..+. ..++|+
T Consensus 119 KLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~v----p~~~~~~~~--------dp~~i~~~~l~~~~-~~~~Dv 185 (429)
T TIGR01425 119 KLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARI----PFYGSYTES--------DPVKIASEGVEKFK-KENFDI 185 (429)
T ss_pred HHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCC----eEEeecCCC--------CHHHHHHHHHHHHH-hCCCCE
Confidence 56666665 489999999987 3 44443221 1222 333332222 11110 13444433 458999
Q ss_pred EEEeCCcchhh---------hcccccccceEEEEEeCCCCCCCCc---CCCCCCCceeEEEEecCCCCCchhHhHHHHHH
Q 030407 77 LLCESGGDNLA---------ANFSRELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASAIGADLAVMER 144 (178)
Q Consensus 77 iiiEttG~~~~---------~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~ 144 (178)
|||.|.|-... ........+.+++|+|++.+.+... .+.. .-..+-+|+||.|-....+..+.
T Consensus 186 ViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~-~~~~~g~IlTKlD~~argG~aLs---- 260 (429)
T TIGR01425 186 IIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKD-SVDVGSVIITKLDGHAKGGGALS---- 260 (429)
T ss_pred EEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHh-ccCCcEEEEECccCCCCccHHhh----
Confidence 99999993210 0011112377899999987643211 1111 11247899999998654222222
Q ss_pred HHHhcCCCCCEEEEecccCCCHHHH
Q 030407 145 DALRMRDGGPFIFAQVGWVIGIIFT 169 (178)
Q Consensus 145 ~l~~~np~a~i~~~SA~~g~gi~el 169 (178)
.... .+.|+.+++ +|++++++
T Consensus 261 ~~~~--t~~PI~fig--~Ge~v~Dl 281 (429)
T TIGR01425 261 AVAA--TKSPIIFIG--TGEHIDDF 281 (429)
T ss_pred hHHH--HCCCeEEEc--CCCChhhc
Confidence 2221 134666665 46666655
No 304
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=0.014 Score=43.16 Aligned_cols=81 Identities=16% Similarity=0.060 Sum_probs=53.3
Q ss_pred ccceEEEEEeCCCCCCCCcC--------CCCCCCc-eeEEEEecCCCCCchhHhHHHHHHHHH---hcCCCCCEEEEecc
Q 030407 94 LADYIIYIIDVSGGDKIPRK--------GGPGITQ-ADLLVINKTDLASAIGADLAVMERDAL---RMRDGGPFIFAQVG 161 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~~--------~~~qi~~-adiiviNK~Dl~~~~~~~~~~~~~~l~---~~np~a~i~~~SA~ 161 (178)
...++|+|+|+...+...+. ..++++. .-+|..||-|+.++ -..+++...++ -.+..--+.+++|.
T Consensus 84 gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A--~~pqei~d~leLe~~r~~~W~vqp~~a~ 161 (180)
T KOG0071|consen 84 GTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA--MKPQEIQDKLELERIRDRNWYVQPSCAL 161 (180)
T ss_pred CCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc--cCHHHHHHHhccccccCCccEeeccccc
Confidence 45789999999776433210 1123433 35777999999877 44445444443 11233467889999
Q ss_pred cCCCHHHHHHHHhhh
Q 030407 162 WVIGIIFTLSITHYI 176 (178)
Q Consensus 162 ~g~gi~el~~~l~~~ 176 (178)
+|.|+.|=+.+|...
T Consensus 162 ~gdgL~eglswlsnn 176 (180)
T KOG0071|consen 162 SGDGLKEGLSWLSNN 176 (180)
T ss_pred cchhHHHHHHHHHhh
Confidence 999999999888754
No 305
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=95.64 E-value=0.019 Score=47.79 Aligned_cols=54 Identities=15% Similarity=0.075 Sum_probs=41.3
Q ss_pred eEEEEecCCCCCch--hHhHHHHHHHHHhcC-CCCCEEEEecccCCCHHHHHHHHhh
Q 030407 122 DLLVINKTDLASAI--GADLAVMERDALRMR-DGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 122 diiviNK~Dl~~~~--~~~~~~~~~~l~~~n-p~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
-+|+-||+||+.+. .++.+++.++++.-+ .++|++++||.-+.+|+-+.+++-+
T Consensus 182 iiilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivk 238 (466)
T KOG0466|consen 182 IIILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVK 238 (466)
T ss_pred EEEEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHh
Confidence 47889999999762 233455666666544 4679999999999999999998753
No 306
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.62 E-value=0.0084 Score=47.97 Aligned_cols=79 Identities=22% Similarity=0.291 Sum_probs=47.1
Q ss_pred ccCC-CcccccccccccCHhHHHhhHhhCCCCEEEEeCCcchhhhcccc---cccceEEEEEeCCCCCC-CC---cCCCC
Q 030407 45 ETGG-CPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSR---ELADYIIYIIDVSGGDK-IP---RKGGP 116 (178)
Q Consensus 45 ~~Gc-Cc~l~i~~dl~~~l~~l~~l~~~~~~d~iiiEttG~~~~~~~~~---~~ad~~I~VvD~~~~~~-~~---~~~~~ 116 (178)
..|| |+- ...++.+.+-+.....|+|++.|-- -..+|.+ ...|.+|.|+|++...- .. .+...
T Consensus 111 GeGC~Cp~-------~allR~~l~~l~~~~~e~VivDtEA--GiEHfgRg~~~~vD~vivVvDpS~~sl~taeri~~L~~ 181 (255)
T COG3640 111 GEGCACPM-------NALLRRLLRHLILNRYEVVIVDTEA--GIEHFGRGTIEGVDLVIVVVDPSYKSLRTAERIKELAE 181 (255)
T ss_pred CCcccchH-------HHHHHHHHHHHhcccCcEEEEeccc--chhhhccccccCCCEEEEEeCCcHHHHHHHHHHHHHHH
Confidence 5688 662 2223444333335679999999854 2345554 34699999999975311 11 11222
Q ss_pred CCC-ceeEEEEecCCCC
Q 030407 117 GIT-QADLLVINKTDLA 132 (178)
Q Consensus 117 qi~-~adiiviNK~Dl~ 132 (178)
.+. ..-.+|+||+|-.
T Consensus 182 elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 182 ELGIKRIFVVLNKVDEE 198 (255)
T ss_pred HhCCceEEEEEeeccch
Confidence 344 4468999999954
No 307
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.46 E-value=0.12 Score=38.81 Aligned_cols=118 Identities=13% Similarity=0.164 Sum_probs=62.6
Q ss_pred HHHHHhhc-CCcEEEEEecCC-CchhHHHHH---HcCCCCccceeecccCCCcccccccccccCH-hHHHhhHhhCCCCE
Q 030407 3 ALCKFLRD-KYSLAAVTNDIF-TKEDGEFLM---RNGALPEERIRAVETGGCPHAAIREDISINL-GPLEELSNLFKADL 76 (178)
Q Consensus 3 ~~~~~~~~-~~~vaVI~nd~g-~~iD~~li~---~~~~~~~~~~~~l~~GcCc~l~i~~dl~~~l-~~l~~l~~~~~~d~ 76 (178)
++...+.+ ++|++++-.|+. .....++.. ..+. ++..... -. |+...+ +.+... ...++|+
T Consensus 19 ~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~----~~~~~~~--~~------~~~~~~~~~~~~~-~~~~~d~ 85 (173)
T cd03115 19 KLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGV----PVFEEGE--GK------DPVSIAKRAIEHA-REENFDV 85 (173)
T ss_pred HHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCe----EEEecCC--CC------CHHHHHHHHHHHH-HhCCCCE
Confidence 45555654 489999999987 444333321 1122 2222211 11 112112 233333 2568999
Q ss_pred EEEeCCcchh-----hhc---ccc-cccceEEEEEeCCCCCCCCc---CCCCCCCceeEEEEecCCCCCc
Q 030407 77 LLCESGGDNL-----AAN---FSR-ELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASA 134 (178)
Q Consensus 77 iiiEttG~~~-----~~~---~~~-~~ad~~I~VvD~~~~~~~~~---~~~~qi~~adiiviNK~Dl~~~ 134 (178)
|+|+|.|..- ... +.. ...+.+++|+|+....+... .+..... .+-+|+||.|....
T Consensus 86 viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~~~~~-~~~viltk~D~~~~ 154 (173)
T cd03115 86 VIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFNEALG-ITGVILTKLDGDAR 154 (173)
T ss_pred EEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHhhCC-CCEEEEECCcCCCC
Confidence 9999999521 111 111 12588999999865432211 1112233 47899999998765
No 308
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=95.41 E-value=0.01 Score=45.63 Aligned_cols=96 Identities=14% Similarity=0.130 Sum_probs=61.0
Q ss_pred EEEeCCcc----hhhhcccccccceEEEEEeCCCCCCCCc---CCC----CCCCceeEEEEecCCCCCchhHhHHHHHHH
Q 030407 77 LLCESGGD----NLAANFSRELADYIIYIIDVSGGDKIPR---KGG----PGITQADLLVINKTDLASAIGADLAVMERD 145 (178)
Q Consensus 77 iiiEttG~----~~~~~~~~~~ad~~I~VvD~~~~~~~~~---~~~----~qi~~adiiviNK~Dl~~~~~~~~~~~~~~ 145 (178)
.+.||.|. ++...|++ ++...++|+..++...... .+. +-=+.+-++|-||+||++..--.-+.++..
T Consensus 72 mlWdtagqeEfDaItkAyyr-gaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~l 150 (246)
T KOG4252|consen 72 MLWDTAGQEEFDAITKAYYR-GAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGL 150 (246)
T ss_pred HHHHhccchhHHHHHHHHhc-cccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHH
Confidence 34456662 22223333 6788999998876543221 111 112456799999999997621222345555
Q ss_pred HHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 146 ALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 146 l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
.+.++ .+.+.+|++...++...|.+|.+
T Consensus 151 ak~l~--~RlyRtSvked~NV~~vF~YLae 178 (246)
T KOG4252|consen 151 AKKLH--KRLYRTSVKEDFNVMHVFAYLAE 178 (246)
T ss_pred HHHhh--hhhhhhhhhhhhhhHHHHHHHHH
Confidence 55554 48899999999999999988753
No 309
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=95.27 E-value=0.095 Score=39.46 Aligned_cols=99 Identities=15% Similarity=0.103 Sum_probs=65.7
Q ss_pred CCCEEEEeCCcchhh-----hcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHh
Q 030407 73 KADLLLCESGGDNLA-----ANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGAD 138 (178)
Q Consensus 73 ~~d~iiiEttG~~~~-----~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~ 138 (178)
.--+.|-.|.|+.-- ..+. ..+|+.++|+++.+....+. ++...=+.+.+++.||.|+.++....
T Consensus 59 rE~l~lyDTaGlq~~~~eLprhy~-q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd 137 (198)
T KOG3883|consen 59 REQLRLYDTAGLQGGQQELPRHYF-QFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVD 137 (198)
T ss_pred hheEEEeecccccCchhhhhHhHh-ccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcC
Confidence 345777889994211 1111 24699999999977654321 22233456779999999998763233
Q ss_pred HHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHh
Q 030407 139 LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 174 (178)
Q Consensus 139 ~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~ 174 (178)
.+....|.++ ...+.++++|+....+-|.|.++.
T Consensus 138 ~d~A~~Wa~r--Ekvkl~eVta~dR~sL~epf~~l~ 171 (198)
T KOG3883|consen 138 MDVAQIWAKR--EKVKLWEVTAMDRPSLYEPFTYLA 171 (198)
T ss_pred HHHHHHHHhh--hheeEEEEEeccchhhhhHHHHHH
Confidence 4445555553 356899999999999988887764
No 310
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.19 E-value=0.24 Score=43.00 Aligned_cols=146 Identities=18% Similarity=0.177 Sum_probs=82.3
Q ss_pred HHHHHhhcC-CcEEEEEecCC--CchhHHHH--HHcCCCCccceeecccCCCcccccccccccCHhHHHhhHhhCCCCEE
Q 030407 3 ALCKFLRDK-YSLAAVTNDIF--TKEDGEFL--MRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLL 77 (178)
Q Consensus 3 ~~~~~~~~~-~~vaVI~nd~g--~~iD~~li--~~~~~~~~~~~~~l~~GcCc~l~i~~dl~~~l~~l~~l~~~~~~d~i 77 (178)
+|.+||+++ +|++++.-|.- .-+|.... +..++ ++....++--+- .-.=.++... +...+|+|
T Consensus 119 KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v----~~f~~~~~~~Pv-------~Iak~al~~a-k~~~~Dvv 186 (451)
T COG0541 119 KLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGV----PFFGSGTEKDPV-------EIAKAALEKA-KEEGYDVV 186 (451)
T ss_pred HHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCC----ceecCCCCCCHH-------HHHHHHHHHH-HHcCCCEE
Confidence 577888775 99999999988 47777543 33344 455553222221 0001445444 36689999
Q ss_pred EEeCCcc-hhhhcc--------cccccceEEEEEeCCCCCCCCc---CCCCCCCceeEEEEecCCCCCchhHhHHHHHHH
Q 030407 78 LCESGGD-NLAANF--------SRELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASAIGADLAVMERD 145 (178)
Q Consensus 78 iiEttG~-~~~~~~--------~~~~ad~~I~VvD~~~~~~~~~---~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~ 145 (178)
||.|.|= .+-... .....|-+++|+|+..|.+... .+.+.+.. .=|+++|.|--..-+..+..
T Consensus 187 IvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i-tGvIlTKlDGdaRGGaALS~---- 261 (451)
T COG0541 187 IVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI-TGVILTKLDGDARGGAALSA---- 261 (451)
T ss_pred EEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC-ceEEEEcccCCCcchHHHhh----
Confidence 9999992 111111 0011378999999988754321 12222222 36889999975442222221
Q ss_pred HHhcCCCCCEEEEecccCCCHHHH
Q 030407 146 ALRMRDGGPFIFAQVGWVIGIIFT 169 (178)
Q Consensus 146 l~~~np~a~i~~~SA~~g~gi~el 169 (178)
.. . .+.||-++. +||.+++|
T Consensus 262 ~~-~-tg~PIkFiG--tGEki~dL 281 (451)
T COG0541 262 RA-I-TGKPIKFIG--TGEKIDDL 281 (451)
T ss_pred HH-H-HCCCeEEEe--cCCCcccC
Confidence 11 1 245777765 46666654
No 311
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.85 E-value=0.11 Score=43.61 Aligned_cols=148 Identities=18% Similarity=0.217 Sum_probs=83.5
Q ss_pred HHHHHHhhcC-CcEEEEEecCC--CchhHHHH--HHcCCCCccceeecccCCCcccccccccccC-HhHHHhhHhhCCCC
Q 030407 2 LALCKFLRDK-YSLAAVTNDIF--TKEDGEFL--MRNGALPEERIRAVETGGCPHAAIREDISIN-LGPLEELSNLFKAD 75 (178)
Q Consensus 2 ~~~~~~~~~~-~~vaVI~nd~g--~~iD~~li--~~~~~~~~~~~~~l~~GcCc~l~i~~dl~~~-l~~l~~l~~~~~~d 75 (178)
-++..+|++. +||-+-.-|=- ..++..-+ ++.|+ +++.-..|.-+ .+. ..++..- +..++|
T Consensus 157 aKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv----~vI~~~~G~Dp--------AaVafDAi~~A-kar~~D 223 (340)
T COG0552 157 AKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGV----PVISGKEGADP--------AAVAFDAIQAA-KARGID 223 (340)
T ss_pred HHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCC----eEEccCCCCCc--------HHHHHHHHHHH-HHcCCC
Confidence 4677777654 88888887733 24554333 33454 45554334422 222 2666544 367999
Q ss_pred EEEEeCCcc-----hhh----------hcccccccceEEEEEeCCCCCCCCc---CCCCCCCceeEEEEecCCCCCchhH
Q 030407 76 LLLCESGGD-----NLA----------ANFSRELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASAIGA 137 (178)
Q Consensus 76 ~iiiEttG~-----~~~----------~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~qi~~adiiviNK~Dl~~~~~~ 137 (178)
+++|.|.|= ++. .+..+.-.+-++.++|++.|.+... .+.+.+. =|=++++|.|-...
T Consensus 224 vvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~-l~GiIlTKlDgtAK--- 299 (340)
T COG0552 224 VVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVG-LDGIILTKLDGTAK--- 299 (340)
T ss_pred EEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcC-CceEEEEecccCCC---
Confidence 999999992 111 1112211255778889998864321 1111111 27899999994322
Q ss_pred hHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHH
Q 030407 138 DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS 171 (178)
Q Consensus 138 ~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~ 171 (178)
-..+.+..+++ +.||.++- -|+++++|..
T Consensus 300 -GG~il~I~~~l--~~PI~fiG--vGE~~~DL~~ 328 (340)
T COG0552 300 -GGIILSIAYEL--GIPIKFIG--VGEGYDDLRP 328 (340)
T ss_pred -cceeeeHHHHh--CCCEEEEe--CCCChhhccc
Confidence 22233333444 35888876 4888888854
No 312
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=94.81 E-value=0.12 Score=39.91 Aligned_cols=102 Identities=17% Similarity=0.062 Sum_probs=58.7
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCcC---CC------CCCCceeEEEEecCCCCCchhHh-
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPRK---GG------PGITQADLLVINKTDLASAIGAD- 138 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~~---~~------~qi~~adiiviNK~Dl~~~~~~~- 138 (178)
.++..++.|.|.- +...+. ..+++++.++|.......... +. ..-..+-+++.||+|+.......
T Consensus 53 ~~~~~~~Dt~gq~~~~~~~~~y~-~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~ 131 (219)
T COG1100 53 NIKLQLWDTAGQEEYRSLRPEYY-RGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSE 131 (219)
T ss_pred EEEEEeecCCCHHHHHHHHHHHh-cCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHH
Confidence 4567888888831 112222 357899999998763322110 00 00135679999999998762111
Q ss_pred -----------HHHHHHHHHhc-CCCCCEEEEecc--cCCCHHHHHHHHhh
Q 030407 139 -----------LAVMERDALRM-RDGGPFIFAQVG--WVIGIIFTLSITHY 175 (178)
Q Consensus 139 -----------~~~~~~~l~~~-np~a~i~~~SA~--~g~gi~el~~~l~~ 175 (178)
........... ......+.+|++ ++.++.+++..+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~ 182 (219)
T COG1100 132 EILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLR 182 (219)
T ss_pred HHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHH
Confidence 11111111111 112348999999 99999999986554
No 313
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.78 E-value=0.2 Score=43.40 Aligned_cols=96 Identities=16% Similarity=0.138 Sum_probs=53.7
Q ss_pred hHHHhhHhhCCCCEEEEeCCcchhh---------hcccccccceEEEEEeCCCCCCC-C---cCCCCCCCceeEEEEecC
Q 030407 63 GPLEELSNLFKADLLLCESGGDNLA---------ANFSRELADYIIYIIDVSGGDKI-P---RKGGPGITQADLLVINKT 129 (178)
Q Consensus 63 ~~l~~l~~~~~~d~iiiEttG~~~~---------~~~~~~~ad~~I~VvD~~~~~~~-~---~~~~~qi~~adiiviNK~ 129 (178)
.++..+.+..++|+|||.|.|-+.. ........+.+++|+|++..... . ..+.. ..-+-++++|.
T Consensus 310 ~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~--~~idglI~TKL 387 (436)
T PRK11889 310 RALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD--IHIDGIVFTKF 387 (436)
T ss_pred HHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcC--CCCCEEEEEcc
Confidence 4444443234799999999995321 11111123667888998654321 1 11211 23479999999
Q ss_pred CCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHH
Q 030407 130 DLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIF 168 (178)
Q Consensus 130 Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~e 168 (178)
|-.... ..+....... +.|+.+++ +|+++.+
T Consensus 388 DET~k~----G~iLni~~~~--~lPIsyit--~GQ~VPe 418 (436)
T PRK11889 388 DETASS----GELLKIPAVS--SAPIVLMT--DGQDVKK 418 (436)
T ss_pred cCCCCc----cHHHHHHHHH--CcCEEEEe--CCCCCCc
Confidence 987552 3344444433 34777766 4666654
No 314
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=94.71 E-value=0.028 Score=50.16 Aligned_cols=62 Identities=16% Similarity=0.173 Sum_probs=38.6
Q ss_pred CCCEEEEeCCcch-hhh-cc-cccccceEEEEEeCCCCCCCCc-C---CCCCCCceeEEEEecCCCCCc
Q 030407 73 KADLLLCESGGDN-LAA-NF-SRELADYIIYIIDVSGGDKIPR-K---GGPGITQADLLVINKTDLASA 134 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~~-~~-~~~~ad~~I~VvD~~~~~~~~~-~---~~~qi~~adiiviNK~Dl~~~ 134 (178)
+..+.|+.|.|.. ... .. ....+|++|+|+|+..+..... . .......+-++++||+|+...
T Consensus 79 ~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~ 147 (527)
T TIGR00503 79 DCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIR 147 (527)
T ss_pred CeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCC
Confidence 6788899999931 111 11 1124799999999987643221 0 111123467999999999654
No 315
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=94.67 E-value=0.099 Score=40.78 Aligned_cols=99 Identities=15% Similarity=0.055 Sum_probs=60.1
Q ss_pred CCEEEEeCCcc----hhhhcccccccceEEEEEeCCCCCCCC---cCC-CCC----CCceeEEEEecCCCCCch------
Q 030407 74 ADLLLCESGGD----NLAANFSRELADYIIYIIDVSGGDKIP---RKG-GPG----ITQADLLVINKTDLASAI------ 135 (178)
Q Consensus 74 ~d~iiiEttG~----~~~~~~~~~~ad~~I~VvD~~~~~~~~---~~~-~~q----i~~adiiviNK~Dl~~~~------ 135 (178)
...=+.+|.|. .+. ++.+..+|.+++.++..++.... .++ ++. -..+-++|.+|.||-+..
T Consensus 53 v~L~LwDTAGqedYDrlR-plsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l 131 (198)
T KOG0393|consen 53 VELGLWDTAGQEDYDRLR-PLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKL 131 (198)
T ss_pred EEEeeeecCCCccccccc-ccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHH
Confidence 44556677773 122 45555678888888876654432 122 221 134679999999998531
Q ss_pred ------hHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHh
Q 030407 136 ------GADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 174 (178)
Q Consensus 136 ------~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~ 174 (178)
+...++..+..+++. ...++++||++.+|+.+.|+..-
T Consensus 132 ~~~~~~~Vt~~~g~~lA~~ig-a~~y~EcSa~tq~~v~~vF~~a~ 175 (198)
T KOG0393|consen 132 QRQGLEPVTYEQGLELAKEIG-AVKYLECSALTQKGVKEVFDEAI 175 (198)
T ss_pred HhccCCcccHHHHHHHHHHhC-cceeeeehhhhhCCcHHHHHHHH
Confidence 011122223333332 26899999999999999998543
No 316
>PRK10867 signal recognition particle protein; Provisional
Probab=94.64 E-value=0.28 Score=42.79 Aligned_cols=147 Identities=15% Similarity=0.106 Sum_probs=75.5
Q ss_pred HHHHHhh-c-CCcEEEEEecCC-C-chhHH--HHHHcCCCCccceeecccCCCcccccccccccCHhHHHhhHhhCCCCE
Q 030407 3 ALCKFLR-D-KYSLAAVTNDIF-T-KEDGE--FLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADL 76 (178)
Q Consensus 3 ~~~~~~~-~-~~~vaVI~nd~g-~-~iD~~--li~~~~~~~~~~~~~l~~GcCc~l~i~~dl~~~l~~l~~l~~~~~~d~ 76 (178)
+++.++. + ++|+++|.-|.- . .++.. +-+..|+ ++.....+..+. .......+..+..++|+
T Consensus 119 kLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv----~v~~~~~~~dp~--------~i~~~a~~~a~~~~~Dv 186 (433)
T PRK10867 119 KLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGV----PVFPSGDGQDPV--------DIAKAALEEAKENGYDV 186 (433)
T ss_pred HHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCC----eEEecCCCCCHH--------HHHHHHHHHHHhcCCCE
Confidence 4555564 3 589999999977 4 33332 1233344 444332222221 11122223334567999
Q ss_pred EEEeCCcch-----hhhc---c-cccccceEEEEEeCCCCCCCCc---CCCCCCCceeEEEEecCCCCCchhHhHHHHHH
Q 030407 77 LLCESGGDN-----LAAN---F-SRELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASAIGADLAVMER 144 (178)
Q Consensus 77 iiiEttG~~-----~~~~---~-~~~~ad~~I~VvD~~~~~~~~~---~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~ 144 (178)
|||+|.|.. +... + .....+.+++|+|+..+.+... .+...+. -+-+|+||.|-.... ..+.+
T Consensus 187 VIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~~~~~-i~giIlTKlD~~~rg----G~als 261 (433)
T PRK10867 187 VIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFNEALG-LTGVILTKLDGDARG----GAALS 261 (433)
T ss_pred EEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHHhhCC-CCEEEEeCccCcccc----cHHHH
Confidence 999999931 1100 0 0011366799999876532211 1111222 257889999965432 12333
Q ss_pred HHHhcCCCCCEEEEecccCCCHHHHH
Q 030407 145 DALRMRDGGPFIFAQVGWVIGIIFTL 170 (178)
Q Consensus 145 ~l~~~np~a~i~~~SA~~g~gi~el~ 170 (178)
..... +.|+.+++ +|+++++|.
T Consensus 262 i~~~~--~~PI~fig--~Ge~v~DLe 283 (433)
T PRK10867 262 IRAVT--GKPIKFIG--TGEKLDDLE 283 (433)
T ss_pred HHHHH--CcCEEEEe--CCCccccCc
Confidence 33332 35777766 367776553
No 317
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=94.49 E-value=0.033 Score=45.33 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=39.3
Q ss_pred CCCCEEEEeCCcch-hhh-cc-cccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCc
Q 030407 72 FKADLLLCESGGDN-LAA-NF-SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 134 (178)
Q Consensus 72 ~~~d~iiiEttG~~-~~~-~~-~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~ 134 (178)
.+..+.++.|.|.. ... .. ....+|.+++|+|++.+...... .......+-++++||+|+...
T Consensus 69 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 69 RDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred CCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCC
Confidence 36788999999932 111 11 11246999999999876432110 111123467999999998765
No 318
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.48 E-value=0.14 Score=44.04 Aligned_cols=145 Identities=17% Similarity=0.179 Sum_probs=76.4
Q ss_pred HHHHHhhcC-CcEEEEEecCC-C-chhHHHHHH--cCCCCccceeecccCCCccccccccccc-CHhHHHhhHhhCCCCE
Q 030407 3 ALCKFLRDK-YSLAAVTNDIF-T-KEDGEFLMR--NGALPEERIRAVETGGCPHAAIREDISI-NLGPLEELSNLFKADL 76 (178)
Q Consensus 3 ~~~~~~~~~-~~vaVI~nd~g-~-~iD~~li~~--~~~~~~~~~~~l~~GcCc~l~i~~dl~~-~l~~l~~l~~~~~~d~ 76 (178)
++.-||+++ +|++.+.-|-- . -+|...... .++ ++.- ++. .-|... ..+.+.+. ++.+||+
T Consensus 120 KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~i----P~yg--syt------e~dpv~ia~egv~~f-Kke~fdv 186 (483)
T KOG0780|consen 120 KLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARV----PFYG--SYT------EADPVKIASEGVDRF-KKENFDV 186 (483)
T ss_pred HHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCC----eeEe--ccc------ccchHHHHHHHHHHH-HhcCCcE
Confidence 566788765 99999999966 3 677654422 222 2221 111 001110 01444444 3668999
Q ss_pred EEEeCCcchhh--hccc-------ccccceEEEEEeCCCCCCCCc---CCCCCCCceeEEEEecCCCCCchhHhHHHHHH
Q 030407 77 LLCESGGDNLA--ANFS-------RELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASAIGADLAVMER 144 (178)
Q Consensus 77 iiiEttG~~~~--~~~~-------~~~ad~~I~VvD~~~~~~~~~---~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~ 144 (178)
||+.|||-... ..|. ....|.+|+|+|++-|..... .+.+-+.. --++++|.|--..-+..+..+.
T Consensus 187 IIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdv-g~vIlTKlDGhakGGgAlSaVa- 264 (483)
T KOG0780|consen 187 IIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDV-GAVILTKLDGHAKGGGALSAVA- 264 (483)
T ss_pred EEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhcc-ceEEEEecccCCCCCceeeehh-
Confidence 99999993110 1111 111388999999987653211 11111111 2578999996433112222221
Q ss_pred HHHhcCCCCCEEEEecccCCCHHHH
Q 030407 145 DALRMRDGGPFIFAQVGWVIGIIFT 169 (178)
Q Consensus 145 ~l~~~np~a~i~~~SA~~g~gi~el 169 (178)
....||+++- |||++++|
T Consensus 265 -----aTksPIiFIG--tGEhmdDl 282 (483)
T KOG0780|consen 265 -----ATKSPIIFIG--TGEHMDDL 282 (483)
T ss_pred -----hhCCCEEEEe--cCcccccc
Confidence 1234676664 67777765
No 319
>PRK09602 translation-associated GTPase; Reviewed
Probab=94.20 E-value=0.077 Score=45.70 Aligned_cols=48 Identities=10% Similarity=0.023 Sum_probs=33.8
Q ss_pred ceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHH-HHHHH
Q 030407 120 QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIF-TLSIT 173 (178)
Q Consensus 120 ~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~e-l~~~l 173 (178)
.+-++|+||+|+.+.. ..+..+. +. +..+++++||+.+.++++ +.+.+
T Consensus 218 KPvI~VlNK~D~~~~~-~~l~~i~----~~-~~~~vvpISA~~e~~l~~~l~~~i 266 (396)
T PRK09602 218 KPMVIAANKADLPPAE-ENIERLK----EE-KYYIVVPTSAEAELALRRAAKAGL 266 (396)
T ss_pred CCEEEEEEchhcccch-HHHHHHH----hc-CCCcEEEEcchhhhhHHHHHHHhH
Confidence 5679999999986431 2233322 23 567899999999999988 54444
No 320
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=93.72 E-value=0.25 Score=42.04 Aligned_cols=79 Identities=15% Similarity=0.077 Sum_probs=48.2
Q ss_pred CHHHHHHhhcC-CcEEEEEecCC-Cc-----hhHHHHHHcCCCCccceeecccCCCcccccccccc-cCHhHHHhhHhhC
Q 030407 1 MLALCKFLRDK-YSLAAVTNDIF-TK-----EDGEFLMRNGALPEERIRAVETGGCPHAAIREDIS-INLGPLEELSNLF 72 (178)
Q Consensus 1 ~~~~~~~~~~~-~~vaVI~nd~g-~~-----iD~~li~~~~~~~~~~~~~l~~GcCc~l~i~~dl~-~~l~~l~~l~~~~ 72 (178)
++++++.|+++ .|||+|..+-. .. -|..+++..|. ..+.+.++..|++.-+.+-. ..+..+.......
T Consensus 222 ~~~l~~~l~~~g~~v~~iKh~~h~~~~d~~g~Ds~r~~~aGa----~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 297 (366)
T PRK14489 222 LEKLIPELIARGYRIGLIKHSHHRVDIDKPGKDSHRLRAAGA----NPTMIVCPERWALMRETPEEAVPFKVLIATFDPE 297 (366)
T ss_pred HHHHHHHHHHcCCEEEEEEECCcccCCCCCCChhHHHHhCCC----ceEEEEcCCeEEEEEeCCCCCcCHHHHHHhcCCc
Confidence 36788888875 99999998744 33 48999988887 55666566666542111101 1232222111123
Q ss_pred CCCEEEEeCCc
Q 030407 73 KADLLLCESGG 83 (178)
Q Consensus 73 ~~d~iiiEttG 83 (178)
+.|+||+|.--
T Consensus 298 ~~D~vlvEG~k 308 (366)
T PRK14489 298 EVDLILVEGFK 308 (366)
T ss_pred CCCEEEEcccc
Confidence 68999999744
No 321
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.44 E-value=0.98 Score=39.40 Aligned_cols=145 Identities=17% Similarity=0.139 Sum_probs=75.6
Q ss_pred HHHHHhh--cCCcEEEEEecCC-Cc-hhHH--HHHHcCCCCccceeecccCCCcccccccccccCH-hHHHhhHhhCCCC
Q 030407 3 ALCKFLR--DKYSLAAVTNDIF-TK-EDGE--FLMRNGALPEERIRAVETGGCPHAAIREDISINL-GPLEELSNLFKAD 75 (178)
Q Consensus 3 ~~~~~~~--~~~~vaVI~nd~g-~~-iD~~--li~~~~~~~~~~~~~l~~GcCc~l~i~~dl~~~l-~~l~~l~~~~~~d 75 (178)
+++.++. .++|+++|--|.- .. .+.. +-+..|+ ++....++-++. ... .++.. ....++|
T Consensus 118 kLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gv----p~~~~~~~~~P~--------~i~~~al~~-~~~~~~D 184 (428)
T TIGR00959 118 KLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGV----PVFALGKGQSPV--------EIARRALEY-AKENGFD 184 (428)
T ss_pred HHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCC----ceEecCCCCCHH--------HHHHHHHHH-HHhcCCC
Confidence 5566654 3589999999976 43 3321 1122343 344433222331 111 23333 3356799
Q ss_pred EEEEeCCcch-----hhh---ccc-ccccceEEEEEeCCCCCCCCc---CCCCCCCceeEEEEecCCCCCchhHhHHHHH
Q 030407 76 LLLCESGGDN-----LAA---NFS-RELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASAIGADLAVME 143 (178)
Q Consensus 76 ~iiiEttG~~-----~~~---~~~-~~~ad~~I~VvD~~~~~~~~~---~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~ 143 (178)
+|||+|.|.. +.. .+. ....+.+++|+|+..+.+... .+...+. -+-+|+||.|-.... ..+.
T Consensus 185 vVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~~~v~-i~giIlTKlD~~~~~----G~~l 259 (428)
T TIGR00959 185 VVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLG-LTGVVLTKLDGDARG----GAAL 259 (428)
T ss_pred EEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHHhhCC-CCEEEEeCccCcccc----cHHH
Confidence 9999999931 111 011 111377899999976532211 1111222 257889999965432 1233
Q ss_pred HHHHhcCCCCCEEEEecccCCCHHHH
Q 030407 144 RDALRMRDGGPFIFAQVGWVIGIIFT 169 (178)
Q Consensus 144 ~~l~~~np~a~i~~~SA~~g~gi~el 169 (178)
+..... +.|+.+++. |+.++++
T Consensus 260 si~~~~--~~PI~fi~~--Ge~i~dl 281 (428)
T TIGR00959 260 SVRSVT--GKPIKFIGV--GEKIDDL 281 (428)
T ss_pred HHHHHH--CcCEEEEeC--CCChhhC
Confidence 333333 357777663 6767655
No 322
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.42 E-value=0.13 Score=40.74 Aligned_cols=22 Identities=18% Similarity=-0.230 Sum_probs=18.4
Q ss_pred CEEEEecccCCCHHHHHHHHhhh
Q 030407 154 PFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 154 ~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+.+.|+++| ++++|.+|+.+.
T Consensus 216 ~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 216 TFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred EEeecccCcC-ChHHHHHHHHHh
Confidence 5677899988 999999998764
No 323
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=93.25 E-value=0.42 Score=37.17 Aligned_cols=79 Identities=10% Similarity=-0.074 Sum_probs=51.7
Q ss_pred ccceEEEEEeCCCCCCCCc---C-----CCCCC----CceeEEEEecCCCCCchh-HhHHHHHHHHHhcCCCCCEEEEec
Q 030407 94 LADYIIYIIDVSGGDKIPR---K-----GGPGI----TQADLLVINKTDLASAIG-ADLAVMERDALRMRDGGPFIFAQV 160 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~---~-----~~~qi----~~adiiviNK~Dl~~~~~-~~~~~~~~~l~~~np~a~i~~~SA 160 (178)
.+++...|+|.++..+... + .+-|+ ..|.++..||+|.-.... +...++.++ ...|..+..+.||+
T Consensus 98 ea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f-~kengf~gwtets~ 176 (229)
T KOG4423|consen 98 EAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNF-KKENGFEGWTETSA 176 (229)
T ss_pred CCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHH-HhccCccceeeecc
Confidence 4677889999987543211 1 11122 346799999999864411 112233333 34578899999999
Q ss_pred ccCCCHHHHHHHH
Q 030407 161 GWVIGIIFTLSIT 173 (178)
Q Consensus 161 ~~g~gi~el~~~l 173 (178)
|.+.+|+|..+.+
T Consensus 177 Kenkni~Ea~r~l 189 (229)
T KOG4423|consen 177 KENKNIPEAQREL 189 (229)
T ss_pred ccccChhHHHHHH
Confidence 9999999987754
No 324
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=93.20 E-value=0.13 Score=40.18 Aligned_cols=61 Identities=18% Similarity=0.149 Sum_probs=38.7
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---------CC---------------CCC---CCce
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---------KG---------------GPG---ITQA 121 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~---------------~~q---i~~a 121 (178)
.+.+-|.+|.|.. +...+.. .+|++|+|+|.++...... .. .++ -..+
T Consensus 53 ~~~l~IwDtaG~e~~~~l~~~~yr-~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~P 131 (202)
T cd04102 53 TFFVELWDVGGSESVKSTRAVFYN-QVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIP 131 (202)
T ss_pred EEEEEEEecCCchhHHHHHHHHhC-cCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCce
Confidence 4667788999941 2233333 5799999999987642210 00 001 1346
Q ss_pred eEEEEecCCCCCc
Q 030407 122 DLLVINKTDLASA 134 (178)
Q Consensus 122 diiviNK~Dl~~~ 134 (178)
-++|.||+|+.++
T Consensus 132 iilVGnK~Dl~~~ 144 (202)
T cd04102 132 LLVIGTKLDQIPE 144 (202)
T ss_pred EEEEEECccchhh
Confidence 7999999999754
No 325
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.98 E-value=0.91 Score=39.17 Aligned_cols=144 Identities=13% Similarity=0.099 Sum_probs=70.9
Q ss_pred HHHHHhhc-CCcEEEEEecCC-Cc-hhHHHHHHcCCCCccceeecccCCCcccccccccccCH-hHHHhhHhhCCCCEEE
Q 030407 3 ALCKFLRD-KYSLAAVTNDIF-TK-EDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINL-GPLEELSNLFKADLLL 78 (178)
Q Consensus 3 ~~~~~~~~-~~~vaVI~nd~g-~~-iD~~li~~~~~~~~~~~~~l~~GcCc~l~i~~dl~~~l-~~l~~l~~~~~~d~ii 78 (178)
++..++.+ ++++++|.-|.. ++ ++. +-..... .+-++... + + ...+ .++..+....++|+||
T Consensus 225 kLA~~l~~~g~~V~lItaDtyR~gAveQ-Lk~yae~-lgvpv~~~------~-----d-p~dL~~al~~l~~~~~~D~VL 290 (407)
T PRK12726 225 KLGWQLLKQNRTVGFITTDTFRSGAVEQ-FQGYADK-LDVELIVA------T-----S-PAELEEAVQYMTYVNCVDHIL 290 (407)
T ss_pred HHHHHHHHcCCeEEEEeCCccCccHHHH-HHHHhhc-CCCCEEec------C-----C-HHHHHHHHHHHHhcCCCCEEE
Confidence 45555543 589999999987 53 332 2211110 00022211 1 1 1122 4444443235799999
Q ss_pred EeCCcchhh--------hccc-ccccceEEEEEeCCCCCCCCcCCCC--CCCceeEEEEecCCCCCchhHhHHHHHHHHH
Q 030407 79 CESGGDNLA--------ANFS-RELADYIIYIIDVSGGDKIPRKGGP--GITQADLLVINKTDLASAIGADLAVMERDAL 147 (178)
Q Consensus 79 iEttG~~~~--------~~~~-~~~ad~~I~VvD~~~~~~~~~~~~~--qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~ 147 (178)
|.|.|.+.. ..+. ....+..++|++++........... ..-..+-++++|.|-... ...+.+...
T Consensus 291 IDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~TKLDET~~----~G~~Lsv~~ 366 (407)
T PRK12726 291 IDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTR----IGDLYTVMQ 366 (407)
T ss_pred EECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEEEcccCCCC----ccHHHHHHH
Confidence 999994211 0011 1112555667776432211111000 112247899999998654 233444443
Q ss_pred hcCCCCCEEEEecccCCCHHH
Q 030407 148 RMRDGGPFIFAQVGWVIGIIF 168 (178)
Q Consensus 148 ~~np~a~i~~~SA~~g~gi~e 168 (178)
.. +.|+.++| +|+++++
T Consensus 367 ~t--glPIsylt--~GQ~Vpd 383 (407)
T PRK12726 367 ET--NLPVLYMT--DGQNITE 383 (407)
T ss_pred HH--CCCEEEEe--cCCCCCc
Confidence 33 45777776 5777765
No 326
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=92.89 E-value=0.39 Score=38.33 Aligned_cols=72 Identities=22% Similarity=0.312 Sum_probs=45.8
Q ss_pred HHHHHHhhcC-CcEEEEEec---CC-CchhHHHHHHcCCCCccceeecccCCCcccccccccccCHhHHHhhHhhCCCCE
Q 030407 2 LALCKFLRDK-YSLAAVTND---IF-TKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADL 76 (178)
Q Consensus 2 ~~~~~~~~~~-~~vaVI~nd---~g-~~iD~~li~~~~~~~~~~~~~l~~GcCc~l~i~~dl~~~l~~l~~l~~~~~~d~ 76 (178)
.+++++|+++ +|||+|-.. +- .+-|..++...|. .++.+.++..+.+ ++. ...+..+.. ..++|+
T Consensus 19 ~~l~~~L~~~G~~V~viK~~~~~~d~~~~Dt~r~~~aGA----~~v~~~~~~~~~~-~~~--~~~l~~ll~---~l~~Dl 88 (229)
T PRK14494 19 EKILKNLKERGYRVATAKHTHHEFDKPDTDTYRFKKAGA----EVVVVSTDETAAF-LYD--RMDLNEILS---LLDADF 88 (229)
T ss_pred HHHHHHHHhCCCeEEEEEecccCCCCCCchHHHHHHcCC----cEEEEecCCeEEE-Eec--CCCHHHHHh---hcCCCE
Confidence 5788888764 999999642 22 2568889888876 5566655555543 121 123443333 237899
Q ss_pred EEEeCCc
Q 030407 77 LLCESGG 83 (178)
Q Consensus 77 iiiEttG 83 (178)
||||.-.
T Consensus 89 vlVEGfk 95 (229)
T PRK14494 89 LLIEGFK 95 (229)
T ss_pred EEEeCCC
Confidence 9999444
No 327
>PRK07560 elongation factor EF-2; Reviewed
Probab=92.79 E-value=0.29 Score=45.43 Aligned_cols=60 Identities=18% Similarity=0.098 Sum_probs=36.3
Q ss_pred CCCEEEEeCCcch-hh-hcc-cccccceEEEEEeCCCCCCCCcC-CCC---CCCceeEEEEecCCCC
Q 030407 73 KADLLLCESGGDN-LA-ANF-SRELADYIIYIIDVSGGDKIPRK-GGP---GITQADLLVINKTDLA 132 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~-~~~-~~~~ad~~I~VvD~~~~~~~~~~-~~~---qi~~adiiviNK~Dl~ 132 (178)
++-+.||.|.|.. .. ... ....+|++++|+|+..+...+.. ... ....+-++++||+|+.
T Consensus 86 ~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 86 EYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred cEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhh
Confidence 4557899999931 11 111 11246999999999887543221 001 1123459999999986
No 328
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=92.73 E-value=0.24 Score=38.47 Aligned_cols=144 Identities=15% Similarity=0.091 Sum_probs=74.4
Q ss_pred HHHHHhhc-CCcEEEEEecCC-C-chhHHH--HHHcCCCCccceeecccCCCcccccccccccCH-hHHHhhHhhCCCCE
Q 030407 3 ALCKFLRD-KYSLAAVTNDIF-T-KEDGEF--LMRNGALPEERIRAVETGGCPHAAIREDISINL-GPLEELSNLFKADL 76 (178)
Q Consensus 3 ~~~~~~~~-~~~vaVI~nd~g-~-~iD~~l--i~~~~~~~~~~~~~l~~GcCc~l~i~~dl~~~l-~~l~~l~~~~~~d~ 76 (178)
++..+++. ++||++|.-|.. . .+|... -+..|+ ++...... +|....+ +++... +..++|+
T Consensus 20 KLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~v----p~~~~~~~--------~~~~~~~~~~l~~~-~~~~~D~ 86 (196)
T PF00448_consen 20 KLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGV----PFYVARTE--------SDPAEIAREALEKF-RKKGYDL 86 (196)
T ss_dssp HHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTE----EEEESSTT--------SCHHHHHHHHHHHH-HHTTSSE
T ss_pred HHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhcc----ccchhhcc--------hhhHHHHHHHHHHH-hhcCCCE
Confidence 56666654 599999999988 6 444321 222343 33332211 1111112 334433 3568999
Q ss_pred EEEeCCcchhhh---------cccccccceEEEEEeCCCCCCCCcC---CCCCCCceeEEEEecCCCCCchhHhHHHHHH
Q 030407 77 LLCESGGDNLAA---------NFSRELADYIIYIIDVSGGDKIPRK---GGPGITQADLLVINKTDLASAIGADLAVMER 144 (178)
Q Consensus 77 iiiEttG~~~~~---------~~~~~~ad~~I~VvD~~~~~~~~~~---~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~ 144 (178)
|||.|.|.+... .......+-+.+|++++.+.+.... +...+ ..+-++++|.|-.... ..+..
T Consensus 87 vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~-~~~~lIlTKlDet~~~----G~~l~ 161 (196)
T PF00448_consen 87 VLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF-GIDGLILTKLDETARL----GALLS 161 (196)
T ss_dssp EEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS-STCEEEEESTTSSSTT----HHHHH
T ss_pred EEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc-cCceEEEEeecCCCCc----cccee
Confidence 999999953211 0111123678999999775432111 00001 1367889999987553 33444
Q ss_pred HHHhcCCCCCEEEEecccCCCHHH
Q 030407 145 DALRMRDGGPFIFAQVGWVIGIIF 168 (178)
Q Consensus 145 ~l~~~np~a~i~~~SA~~g~gi~e 168 (178)
.+.+. ..|+-.+| +|+++++
T Consensus 162 ~~~~~--~~Pi~~it--~Gq~V~D 181 (196)
T PF00448_consen 162 LAYES--GLPISYIT--TGQRVDD 181 (196)
T ss_dssp HHHHH--TSEEEEEE--SSSSTTG
T ss_pred HHHHh--CCCeEEEE--CCCChhc
Confidence 44433 34677766 4666643
No 329
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=92.70 E-value=0.14 Score=48.18 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=35.4
Q ss_pred EEEEeCCcch-h-hhccc-ccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCC
Q 030407 76 LLLCESGGDN-L-AANFS-RELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLA 132 (178)
Q Consensus 76 ~iiiEttG~~-~-~~~~~-~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~ 132 (178)
+=||.|.|-. . ..... ...+|+.|+|+|+..|...+.. .......+-++++||+|+.
T Consensus 100 inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred EEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 3489999921 0 11111 1246999999999987654321 1111234669999999998
No 330
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=92.50 E-value=0.74 Score=40.26 Aligned_cols=143 Identities=17% Similarity=0.175 Sum_probs=73.4
Q ss_pred HHHHHhhcC-CcEEEEEecCC-Cc-hhHHH--HHHcCCCCccceeecccCCCcccccccccccCH-hHHHhhHhhCCCCE
Q 030407 3 ALCKFLRDK-YSLAAVTNDIF-TK-EDGEF--LMRNGALPEERIRAVETGGCPHAAIREDISINL-GPLEELSNLFKADL 76 (178)
Q Consensus 3 ~~~~~~~~~-~~vaVI~nd~g-~~-iD~~l--i~~~~~~~~~~~~~l~~GcCc~l~i~~dl~~~l-~~l~~l~~~~~~d~ 76 (178)
++..++.++ +++++|..|.. .. .|... -+..++ ++..... +.|....+ .++..+ ...|+
T Consensus 114 kLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gv----p~~~~~~--------~~d~~~i~~~al~~~---~~~Dv 178 (437)
T PRK00771 114 KLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGV----PFYGDPD--------NKDAVEIAKEGLEKF---KKADV 178 (437)
T ss_pred HHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCC----cEEecCC--------ccCHHHHHHHHHHHh---hcCCE
Confidence 566667654 89999999977 32 33221 122233 2222111 01111112 222222 24699
Q ss_pred EEEeCCcchhh-h-------cc-cccccceEEEEEeCCCCCCCCc---CCCCCCCceeEEEEecCCCCCchhHhHHHHHH
Q 030407 77 LLCESGGDNLA-A-------NF-SRELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASAIGADLAVMER 144 (178)
Q Consensus 77 iiiEttG~~~~-~-------~~-~~~~ad~~I~VvD~~~~~~~~~---~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~ 144 (178)
|||+|.|.... . .+ .....|.+++|+|++.+.+... .+...+. .+-+|+||.|-.... ..+..
T Consensus 179 VIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~~~l~-i~gvIlTKlD~~a~~----G~~ls 253 (437)
T PRK00771 179 IIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVG-IGGIIITKLDGTAKG----GGALS 253 (437)
T ss_pred EEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHHhcCC-CCEEEEecccCCCcc----cHHHH
Confidence 99999993211 0 01 1112478999999977642211 1111122 367899999976442 23333
Q ss_pred HHHhcCCCCCEEEEecccCCCHHHH
Q 030407 145 DALRMRDGGPFIFAQVGWVIGIIFT 169 (178)
Q Consensus 145 ~l~~~np~a~i~~~SA~~g~gi~el 169 (178)
..... +.|+.+++ +|+.+++|
T Consensus 254 ~~~~~--~~Pi~fig--~Ge~v~Dl 274 (437)
T PRK00771 254 AVAET--GAPIKFIG--TGEKIDDL 274 (437)
T ss_pred HHHHH--CcCEEEEe--cCCCcccC
Confidence 33322 45787776 47777665
No 331
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=91.90 E-value=0.24 Score=43.91 Aligned_cols=94 Identities=15% Similarity=0.125 Sum_probs=55.9
Q ss_pred CEEEEeCCcchhhhc-------------ccccccceEEEEEeCCCC--CCCCc--C----CCCC-CCceeEEEEecCCCC
Q 030407 75 DLLLCESGGDNLAAN-------------FSRELADYIIYIIDVSGG--DKIPR--K----GGPG-ITQADLLVINKTDLA 132 (178)
Q Consensus 75 d~iiiEttG~~~~~~-------------~~~~~ad~~I~VvD~~~~--~~~~~--~----~~~q-i~~adiiviNK~Dl~ 132 (178)
-|-+|.|.|+ +..| ...++...+++++|.++. ..... + ..+. ....-|+|+||+|+.
T Consensus 216 rwQViDTPGI-LD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m 294 (620)
T KOG1490|consen 216 RWQVIDTPGI-LDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAM 294 (620)
T ss_pred eeeecCCccc-cCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeeccccc
Confidence 5678888894 1111 112233568899998752 21110 0 1111 234579999999998
Q ss_pred Cch--hHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHH
Q 030407 133 SAI--GADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTL 170 (178)
Q Consensus 133 ~~~--~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~ 170 (178)
.+. .++-+++.+.+.+. +..+++.+|..+.+|+-++.
T Consensus 295 ~~edL~~~~~~ll~~~~~~-~~v~v~~tS~~~eegVm~Vr 333 (620)
T KOG1490|consen 295 RPEDLDQKNQELLQTIIDD-GNVKVVQTSCVQEEGVMDVR 333 (620)
T ss_pred CccccCHHHHHHHHHHHhc-cCceEEEecccchhceeeHH
Confidence 761 12223344444433 45799999999999998764
No 332
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=91.59 E-value=1.6 Score=34.85 Aligned_cols=42 Identities=19% Similarity=0.366 Sum_probs=24.8
Q ss_pred hHHHhhHhhCCCCEEEEeCCcch---hh-----hcccccccceEEEEEeC
Q 030407 63 GPLEELSNLFKADLLLCESGGDN---LA-----ANFSRELADYIIYIIDV 104 (178)
Q Consensus 63 ~~l~~l~~~~~~d~iiiEttG~~---~~-----~~~~~~~ad~~I~VvD~ 104 (178)
+.+..+.+.+.+|+|+||+=|+. +- .|..+...+.+|-|+..
T Consensus 87 e~l~~l~~~~~~D~vLVEADGAk~~PlKaP~~~EPVIP~~t~~VI~V~gl 136 (232)
T TIGR03172 87 STVDDLSDFQHFDVILVEADGAKCRPLKAPSDHEPVIPKSSTTVIGVAGI 136 (232)
T ss_pred HHHHHHHhccCCCEEEEECCCcCCCcccCCCCCCCccCCCCCEEEEEeCH
Confidence 34444443334799999999952 11 22333445777777754
No 333
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=91.51 E-value=0.29 Score=44.68 Aligned_cols=88 Identities=13% Similarity=0.115 Sum_probs=54.4
Q ss_pred CEEEEeCCcchhhhcccc------cccceEEEEEeCCCCCCCCcC---C-CCCCCceeEEEEecCCCCCchhHhHHHHHH
Q 030407 75 DLLLCESGGDNLAANFSR------ELADYIIYIIDVSGGDKIPRK---G-GPGITQADLLVINKTDLASAIGADLAVMER 144 (178)
Q Consensus 75 d~iiiEttG~~~~~~~~~------~~ad~~I~VvD~~~~~~~~~~---~-~~qi~~adiiviNK~Dl~~~~~~~~~~~~~ 144 (178)
|+++|.+.|+.+.+.... ..+|..|+|+.+.+.....++ + ...-+---.|+.||+|.....++-.+.+.+
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~KpniFIlnnkwDasase~ec~e~V~~ 286 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEEKPNIFILNNKWDASASEPECKEDVLK 286 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhccCCcEEEEechhhhhcccHHHHHHHHH
Confidence 889999999654332211 236999999998764322111 0 000022237888999987653355666777
Q ss_pred HHHhcCCC------CCEEEEeccc
Q 030407 145 DALRMRDG------GPFIFAQVGW 162 (178)
Q Consensus 145 ~l~~~np~------a~i~~~SA~~ 162 (178)
+++++.|. -.+|++||+.
T Consensus 287 Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 287 QIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred HHHhcCcccHhhhcCeeEEEeccc
Confidence 77777553 4899999653
No 334
>PTZ00416 elongation factor 2; Provisional
Probab=91.42 E-value=0.22 Score=46.97 Aligned_cols=60 Identities=20% Similarity=0.123 Sum_probs=37.9
Q ss_pred CCCEEEEeCCcch--hhhcc-cccccceEEEEEeCCCCCCCCcC-CCC---CCCceeEEEEecCCCC
Q 030407 73 KADLLLCESGGDN--LAANF-SRELADYIIYIIDVSGGDKIPRK-GGP---GITQADLLVINKTDLA 132 (178)
Q Consensus 73 ~~d~iiiEttG~~--~~~~~-~~~~ad~~I~VvD~~~~~~~~~~-~~~---qi~~adiiviNK~Dl~ 132 (178)
++-+.||.|.|.. ..... ....+|++|+|+|+..+...+.. ... ....+-++++||+|+.
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 3457899999931 11111 11246999999999887554321 111 1234679999999997
No 335
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=91.39 E-value=0.15 Score=36.05 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=18.4
Q ss_pred EEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEeccc
Q 030407 125 VINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGW 162 (178)
Q Consensus 125 viNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~ 162 (178)
+.||+|+..+ .+.++++ ++..|..+++++||..
T Consensus 1 AaNK~D~~~a-~~ni~kl----~~~~~~~~vVp~SA~a 33 (109)
T PF08438_consen 1 AANKADLPAA-DENIEKL----KEKYPDEPVVPTSAAA 33 (109)
T ss_dssp EEE-GGG-S--HHHHHHH----HHHHTT-EEEEE-HHH
T ss_pred CCcccccccc-HhHHHHH----HHhCCCCceeeccHHH
Confidence 5899997443 1444444 4445778999999864
No 336
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=91.18 E-value=0.11 Score=43.78 Aligned_cols=92 Identities=18% Similarity=0.062 Sum_probs=54.8
Q ss_pred CCCEEEEeCCcc------hhhhccccc-----ccceEEEEEeCCCCCCCCcC-----CCCCCCce-------eEEEEecC
Q 030407 73 KADLLLCESGGD------NLAANFSRE-----LADYIIYIIDVSGGDKIPRK-----GGPGITQA-------DLLVINKT 129 (178)
Q Consensus 73 ~~d~iiiEttG~------~~~~~~~~~-----~ad~~I~VvD~~~~~~~~~~-----~~~qi~~a-------diiviNK~ 129 (178)
+--+++..|+|- .+.+.|... -+|.++-|+|.+++.....+ ...++..+ =+=|=||+
T Consensus 225 g~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnki 304 (410)
T KOG0410|consen 225 GNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKI 304 (410)
T ss_pred CcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccc
Confidence 567899999993 122333321 25899999999987532110 00112111 13355777
Q ss_pred CCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 130 DLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 130 Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
|..+. +. +. -|. -.+.+||++|.|++++++.+...
T Consensus 305 D~e~~--~~-e~--------E~n-~~v~isaltgdgl~el~~a~~~k 339 (410)
T KOG0410|consen 305 DYEED--EV-EE--------EKN-LDVGISALTGDGLEELLKAEETK 339 (410)
T ss_pred ccccc--cC-cc--------ccC-CccccccccCccHHHHHHHHHHH
Confidence 76544 11 10 111 26889999999999999987654
No 337
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=90.85 E-value=0.58 Score=35.11 Aligned_cols=75 Identities=15% Similarity=0.027 Sum_probs=42.4
Q ss_pred hCCCCEEEEeCCcchhhh-ccc-ccccceEEEEEeCCCCCCCCc----CCCCCCCceeEEEEecCCCCCchhHhHHHHHH
Q 030407 71 LFKADLLLCESGGDNLAA-NFS-RELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGADLAVMER 144 (178)
Q Consensus 71 ~~~~d~iiiEttG~~~~~-~~~-~~~ad~~I~VvD~~~~~~~~~----~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~ 144 (178)
..++|+|||.|.|. ... ... ...+|.+++++.+....-... +........-.+|+||+|..+. ..+.+.+
T Consensus 90 ~~~~d~viiDtpp~-~~~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~~~---~~~~~~~ 165 (179)
T cd03110 90 AEGAELIIIDGPPG-IGCPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLNDE---IAEEIED 165 (179)
T ss_pred hcCCCEEEEECcCC-CcHHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCCcc---hHHHHHH
Confidence 36899999999972 221 111 134799999998865321100 0001112234799999997544 2344555
Q ss_pred HHHhc
Q 030407 145 DALRM 149 (178)
Q Consensus 145 ~l~~~ 149 (178)
.+++.
T Consensus 166 ~~~~~ 170 (179)
T cd03110 166 YCEEE 170 (179)
T ss_pred HHHHc
Confidence 66554
No 338
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=90.77 E-value=1.1 Score=38.77 Aligned_cols=80 Identities=15% Similarity=0.078 Sum_probs=45.0
Q ss_pred cceEEEEEeCCCCCCCCcCC------CCCCCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHH
Q 030407 95 ADYIIYIIDVSGGDKIPRKG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIF 168 (178)
Q Consensus 95 ad~~I~VvD~~~~~~~~~~~------~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~e 168 (178)
.|++|-|+|+.++....-.+ .+--..--+.|+||+||++. -........+....|... |-.|-.+..|=-.
T Consensus 214 SDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPt--wvt~~Wv~~lSkeyPTiA-fHAsi~nsfGKga 290 (572)
T KOG2423|consen 214 SDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPT--WVTAKWVRHLSKEYPTIA-FHASINNSFGKGA 290 (572)
T ss_pred cceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccH--HHHHHHHHHHhhhCccee-eehhhcCccchhH
Confidence 58999999998764332110 00111224899999999876 222333333434444221 3334455667667
Q ss_pred HHHHHhhhh
Q 030407 169 TLSITHYIV 177 (178)
Q Consensus 169 l~~~l~~~~ 177 (178)
|++.|.+|+
T Consensus 291 lI~llRQf~ 299 (572)
T KOG2423|consen 291 LIQLLRQFA 299 (572)
T ss_pred HHHHHHHHH
Confidence 777776664
No 339
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.08 E-value=0.61 Score=38.12 Aligned_cols=96 Identities=15% Similarity=0.150 Sum_probs=54.4
Q ss_pred hHHHhhHhhCCCCEEEEeCCcchhh---------hcccccccceEEEEEeCCCCC-CCC---cCCCCCCCceeEEEEecC
Q 030407 63 GPLEELSNLFKADLLLCESGGDNLA---------ANFSRELADYIIYIIDVSGGD-KIP---RKGGPGITQADLLVINKT 129 (178)
Q Consensus 63 ~~l~~l~~~~~~d~iiiEttG~~~~---------~~~~~~~ad~~I~VvD~~~~~-~~~---~~~~~qi~~adiiviNK~ 129 (178)
.++..+.+..++|+|||.|.|-+.. ........+.+++|+|++... +.. ..+.. -..+-++++|.
T Consensus 144 ~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~--~~~~~~I~TKl 221 (270)
T PRK06731 144 RALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD--IHIDGIVFTKF 221 (270)
T ss_pred HHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCC--CCCCEEEEEee
Confidence 4444444335799999999994311 111111125688999987543 211 12222 23489999999
Q ss_pred CCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHH
Q 030407 130 DLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIF 168 (178)
Q Consensus 130 Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~e 168 (178)
|-.... ..+....... +.|+.+++ +|+++.+
T Consensus 222 Det~~~----G~~l~~~~~~--~~Pi~~it--~Gq~vp~ 252 (270)
T PRK06731 222 DETASS----GELLKIPAVS--SAPIVLMT--DGQDVKK 252 (270)
T ss_pred cCCCCc----cHHHHHHHHH--CcCEEEEe--CCCCCCc
Confidence 987653 2333333333 45777766 5777664
No 340
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=90.03 E-value=0.53 Score=43.60 Aligned_cols=57 Identities=30% Similarity=0.263 Sum_probs=36.1
Q ss_pred CCCCEEEEeCCcchh-----hhcccccccceEEEEEeCCCCCCCCcC-CCCC--C-CceeEEEEecCC
Q 030407 72 FKADLLLCESGGDNL-----AANFSRELADYIIYIIDVSGGDKIPRK-GGPG--I-TQADLLVINKTD 130 (178)
Q Consensus 72 ~~~d~iiiEttG~~~-----~~~~~~~~ad~~I~VvD~~~~~~~~~~-~~~q--i-~~adiiviNK~D 130 (178)
.++-+-+|.+.| .+ .....+ +.|+.++++|+.+|--.+.. ..+| + ...-++|+||+|
T Consensus 70 ~~~~~nlidspg-hvdf~sevssas~-l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkid 135 (887)
T KOG0467|consen 70 KDYLINLIDSPG-HVDFSSEVSSASR-LSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKID 135 (887)
T ss_pred CceEEEEecCCC-ccchhhhhhhhhh-hcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhh
Confidence 367788899999 22 122222 56999999999887543321 0011 1 234699999999
No 341
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=89.97 E-value=0.9 Score=34.72 Aligned_cols=101 Identities=9% Similarity=0.057 Sum_probs=57.8
Q ss_pred CCCEEEEeCCcchhh------------hc--ccccccceEEEEEeCCCCCCCCcC--------CCCCCCceeEEEEecCC
Q 030407 73 KADLLLCESGGDNLA------------AN--FSRELADYIIYIIDVSGGDKIPRK--------GGPGITQADLLVINKTD 130 (178)
Q Consensus 73 ~~d~iiiEttG~~~~------------~~--~~~~~ad~~I~VvD~~~~~~~~~~--------~~~qi~~adiiviNK~D 130 (178)
+..+.+|+|.|..-. .. ......|.+++|+|+.+....... +.+.+-..-++|+||+|
T Consensus 48 ~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d 127 (196)
T cd01852 48 GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRGD 127 (196)
T ss_pred CeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhHhcEEEEEECcc
Confidence 567899999994210 00 112346899999998762211111 11111234589999999
Q ss_pred CCCchhHhH--------HHHHHHHHhcCCCCCEEEEe-----cccCCCHHHHHHHHhhhh
Q 030407 131 LASAIGADL--------AVMERDALRMRDGGPFIFAQ-----VGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 131 l~~~~~~~~--------~~~~~~l~~~np~a~i~~~S-----A~~g~gi~el~~~l~~~~ 177 (178)
...+ ..+ ..+...++... .+++..+ +..+.++++|++.+.+++
T Consensus 128 ~l~~--~~~~~~~~~~~~~l~~l~~~c~--~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~ 183 (196)
T cd01852 128 DLEG--GTLEDYLENSCEALKRLLEKCG--GRYVAFNNKAKGEEQEQQVKELLAKVESMV 183 (196)
T ss_pred ccCC--CcHHHHHHhccHHHHHHHHHhC--CeEEEEeCCCCcchhHHHHHHHHHHHHHHH
Confidence 8764 222 22333333322 2343433 567899999999988765
No 342
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=89.18 E-value=0.24 Score=30.90 Aligned_cols=38 Identities=34% Similarity=0.410 Sum_probs=18.4
Q ss_pred cccceEEEEEeCCCCCCCCc--------CCCCCC-CceeEEEEecCC
Q 030407 93 ELADYIIYIIDVSGGDKIPR--------KGGPGI-TQADLLVINKTD 130 (178)
Q Consensus 93 ~~ad~~I~VvD~~~~~~~~~--------~~~~qi-~~adiiviNK~D 130 (178)
.+.+.+++++|+++.-.+.. ...+.+ ..+-++|+||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 35688999999986432211 011123 456788888887
No 343
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=88.90 E-value=2.9 Score=35.84 Aligned_cols=89 Identities=11% Similarity=0.072 Sum_probs=49.4
Q ss_pred CCCCEEEEeCCcchhh--------hcc-cccccceEEEEEeCCCCCCCCc----CCCCC-------CCceeEEEEecCCC
Q 030407 72 FKADLLLCESGGDNLA--------ANF-SRELADYIIYIIDVSGGDKIPR----KGGPG-------ITQADLLVINKTDL 131 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~--------~~~-~~~~ad~~I~VvD~~~~~~~~~----~~~~q-------i~~adiiviNK~Dl 131 (178)
.++|+|+|.|.|.+.. ..+ ......-.++|++++.+.+... .|... +..-+-+|++|.|-
T Consensus 214 ~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDE 293 (374)
T PRK14722 214 RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDE 293 (374)
T ss_pred cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEecccc
Confidence 4689999999995311 111 1111245688999987643211 11110 11236788999997
Q ss_pred CCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHH
Q 030407 132 ASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIF 168 (178)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~e 168 (178)
... ...+...+.+. ..|+.+++ +|+++.+
T Consensus 294 t~~----~G~~l~~~~~~--~lPi~yvt--~Gq~VPe 322 (374)
T PRK14722 294 ASN----LGGVLDTVIRY--KLPVHYVS--TGQKVPE 322 (374)
T ss_pred CCC----ccHHHHHHHHH--CcCeEEEe--cCCCCCc
Confidence 654 33344444432 34677766 4666654
No 344
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=88.85 E-value=0.23 Score=45.45 Aligned_cols=39 Identities=28% Similarity=0.347 Sum_probs=29.1
Q ss_pred ccceEEEEEeCCCCCCCCc----CCCCCCCceeEEEEecCCCC
Q 030407 94 LADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLA 132 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~----~~~~qi~~adiiviNK~Dl~ 132 (178)
.+|+++.++|+.+|..... ++..|=..|-.+|+||+|+.
T Consensus 220 ~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 220 LSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred hcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHH
Confidence 4699999999988865432 23344566889999999974
No 345
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=88.24 E-value=1.1 Score=35.91 Aligned_cols=61 Identities=20% Similarity=0.107 Sum_probs=36.8
Q ss_pred CCEEEEeCCcchhhh-----------------cccccccceEEEEEeCCCCCCCCc--CCCC---CCCceeEEEEecCCC
Q 030407 74 ADLLLCESGGDNLAA-----------------NFSRELADYIIYIIDVSGGDKIPR--KGGP---GITQADLLVINKTDL 131 (178)
Q Consensus 74 ~d~iiiEttG~~~~~-----------------~~~~~~ad~~I~VvD~~~~~~~~~--~~~~---qi~~adiiviNK~Dl 131 (178)
||+.||.+.|..-.+ .|.....+.+++|+|+..+..... .... .....-++|+||+|.
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~ 204 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDL 204 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCC
Confidence 899999999952110 011112357899999876433222 1111 123456899999999
Q ss_pred CCc
Q 030407 132 ASA 134 (178)
Q Consensus 132 ~~~ 134 (178)
.++
T Consensus 205 ~~~ 207 (240)
T smart00053 205 MDE 207 (240)
T ss_pred CCc
Confidence 876
No 346
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=88.17 E-value=1.6 Score=39.63 Aligned_cols=78 Identities=22% Similarity=0.152 Sum_probs=46.7
Q ss_pred CHHHHHHhhcC-CcEEEEEe-----cCC-CchhHHHHHHcCCCCccceeecccCC-Cccccccc--ccccCHhHHHhhHh
Q 030407 1 MLALCKFLRDK-YSLAAVTN-----DIF-TKEDGEFLMRNGALPEERIRAVETGG-CPHAAIRE--DISINLGPLEELSN 70 (178)
Q Consensus 1 ~~~~~~~~~~~-~~vaVI~n-----d~g-~~iD~~li~~~~~~~~~~~~~l~~Gc-Cc~l~i~~--dl~~~l~~l~~l~~ 70 (178)
+++++++|+++ .|||+|.. |+- .+-|..++...|. ..+.+.+.. +-.. .+. +-...+..+...+.
T Consensus 27 ie~li~~L~~~G~rVavIKh~~h~~d~d~~gkDs~r~~~aGA----~~v~i~s~~~~a~~-~~~~~~~~~~l~~~l~~l~ 101 (597)
T PRK14491 27 LEQLIPELNQRGLRLAVIKHAHHNFDVDQPGKDSYRLRKAGA----SQMLVASRVRWALM-TETPRDGEPELPHLLKQID 101 (597)
T ss_pred HHHHHHHHHhCCceEEEEEcCCcCCCCCCCCchHHHHHHcCC----cEEEEEcCCeEEEE-EEcCcCCCcCHHHHHHhcC
Confidence 47889999875 99999999 333 3568888887776 344555555 3221 110 00112322222111
Q ss_pred hCCCCEEEEeCCc
Q 030407 71 LFKADLLLCESGG 83 (178)
Q Consensus 71 ~~~~d~iiiEttG 83 (178)
..++|+||||.-+
T Consensus 102 ~~~~D~vlvEG~k 114 (597)
T PRK14491 102 ADKVDIVLVEGFK 114 (597)
T ss_pred cCCCCEEEEcCCC
Confidence 2368999999888
No 347
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=87.97 E-value=3.7 Score=35.77 Aligned_cols=86 Identities=14% Similarity=0.114 Sum_probs=47.7
Q ss_pred CCCCEEEEeCCcchhh---------hccc-ccccceEEEEEeCCCCCCCCcCCC---CCCCceeEEEEecCCCCCchhHh
Q 030407 72 FKADLLLCESGGDNLA---------ANFS-RELADYIIYIIDVSGGDKIPRKGG---PGITQADLLVINKTDLASAIGAD 138 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~---------~~~~-~~~ad~~I~VvD~~~~~~~~~~~~---~qi~~adiiviNK~Dl~~~~~~~ 138 (178)
.++|+|||+|.|.+-. .... .....-..+|++++.......... ..+. .+-++++|.|-...
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~-~~~vI~TKlDet~~---- 372 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLP-LDGLIFTKLDETSS---- 372 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCC-CCEEEEeccccccc----
Confidence 3699999999995211 1111 001135678888866532211111 1122 35799999998654
Q ss_pred HHHHHHHHHhcCCCCCEEEEecccCCCH
Q 030407 139 LAVMERDALRMRDGGPFIFAQVGWVIGI 166 (178)
Q Consensus 139 ~~~~~~~l~~~np~a~i~~~SA~~g~gi 166 (178)
...+...+... +.|+.+++ +|+++
T Consensus 373 ~G~i~~~~~~~--~lPv~yit--~Gq~V 396 (424)
T PRK05703 373 LGSILSLLIES--GLPISYLT--NGQRV 396 (424)
T ss_pred ccHHHHHHHHH--CCCEEEEe--CCCCC
Confidence 23455555443 44777766 46775
No 348
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=87.89 E-value=3 Score=36.08 Aligned_cols=88 Identities=10% Similarity=0.041 Sum_probs=47.0
Q ss_pred CCCEEEEeCCcchhh---------hcccccccceEEEEEeCCCCCCCCcCCCCCCCc--eeEEEEecCCCCCchhHhHHH
Q 030407 73 KADLLLCESGGDNLA---------ANFSRELADYIIYIIDVSGGDKIPRKGGPGITQ--ADLLVINKTDLASAIGADLAV 141 (178)
Q Consensus 73 ~~d~iiiEttG~~~~---------~~~~~~~ad~~I~VvD~~~~~~~~~~~~~qi~~--adiiviNK~Dl~~~~~~~~~~ 141 (178)
..|+|||.|+|.+.. ..+......-+-+|++++.........-.+++. -+-++++|.|-.+. +..
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I~TKlDET~s----~G~ 356 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLIFTKLDETTS----LGN 356 (407)
T ss_pred cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcceeEEEcccccCc----hhH
Confidence 679999999995421 111111123355677776532211111112221 25789999997654 445
Q ss_pred HHHHHHhcCCCCCEEEEecccCCCHHH
Q 030407 142 MERDALRMRDGGPFIFAQVGWVIGIIF 168 (178)
Q Consensus 142 ~~~~l~~~np~a~i~~~SA~~g~gi~e 168 (178)
+...+.+- ..|+-+++ +|+.|.+
T Consensus 357 ~~s~~~e~--~~PV~YvT--~GQ~VPe 379 (407)
T COG1419 357 LFSLMYET--RLPVSYVT--NGQRVPE 379 (407)
T ss_pred HHHHHHHh--CCCeEEEe--CCCCCCc
Confidence 55555543 33666665 4666554
No 349
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=87.76 E-value=1.4 Score=40.09 Aligned_cols=82 Identities=13% Similarity=0.207 Sum_probs=49.9
Q ss_pred CCCEEEEeCCcchhhhccccc----ccceEEEEEeCCCCCCCCcC-CCCCC---CceeEEEEecCCCCCchhHhHHHHHH
Q 030407 73 KADLLLCESGGDNLAANFSRE----LADYIIYIIDVSGGDKIPRK-GGPGI---TQADLLVINKTDLASAIGADLAVMER 144 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~~~~~~----~ad~~I~VvD~~~~~~~~~~-~~~qi---~~adiiviNK~Dl~~~~~~~~~~~~~ 144 (178)
.+.+-+|.|.| .+.-++.-+ ..|+.|+|+|+..|...+.. .-.|+ ..+-+..+||.|.+.+ .-...+.+
T Consensus 103 ~~~iNiIDTPG-HvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa--~~~~~l~~ 179 (721)
T KOG0465|consen 103 DYRINIIDTPG-HVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGA--SPFRTLNQ 179 (721)
T ss_pred cceeEEecCCC-ceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCC--ChHHHHHH
Confidence 57889999999 333333221 24999999999888654431 12232 3567999999999877 33233333
Q ss_pred HHHhcCCCCCEEE
Q 030407 145 DALRMRDGGPFIF 157 (178)
Q Consensus 145 ~l~~~np~a~i~~ 157 (178)
....+++.+-++.
T Consensus 180 i~~kl~~~~a~vq 192 (721)
T KOG0465|consen 180 IRTKLNHKPAVVQ 192 (721)
T ss_pred HHhhcCCchheeE
Confidence 3334455543333
No 350
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=87.73 E-value=1.6 Score=36.91 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=41.4
Q ss_pred CCceeEEEEecCCCCCc-------hhHhHHHHHHHHHhc--CCCCCEEEEecccCCCHHHHHHHH
Q 030407 118 ITQADLLVINKTDLASA-------IGADLAVMERDALRM--RDGGPFIFAQVGWVIGIIFTLSIT 173 (178)
Q Consensus 118 i~~adiiviNK~Dl~~~-------~~~~~~~~~~~l~~~--np~a~i~~~SA~~g~gi~el~~~l 173 (178)
+....+||++|+|.++- ..+....+..++|.. .-++..++||+|...+|+-|..+|
T Consensus 221 lGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYi 285 (473)
T KOG3905|consen 221 LGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYI 285 (473)
T ss_pred CCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHH
Confidence 45667999999999642 123445566666643 357899999999999999998875
No 351
>PLN00023 GTP-binding protein; Provisional
Probab=87.67 E-value=0.4 Score=40.40 Aligned_cols=76 Identities=17% Similarity=0.210 Sum_probs=44.4
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---------CCCC----------C-CCceeEEEEec
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---------KGGP----------G-ITQADLLVINK 128 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~----------q-i~~adiiviNK 128 (178)
.+.+-|.+|.|.. +...+.. .++++|+|+|.+....... .... . -...-+||.||
T Consensus 82 ~v~LqIWDTAGqErfrsL~~~yyr-~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK 160 (334)
T PLN00023 82 DFFVELWDVSGHERYKDCRSLFYS-QINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNK 160 (334)
T ss_pred eEEEEEEECCCChhhhhhhHHhcc-CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEEC
Confidence 4667889999931 2233333 5899999999987432110 0100 0 12457999999
Q ss_pred CCCCCchh------HhHHHHHHHHHhc
Q 030407 129 TDLASAIG------ADLAVMERDALRM 149 (178)
Q Consensus 129 ~Dl~~~~~------~~~~~~~~~l~~~ 149 (178)
+||.+... ...+..+++.++.
T Consensus 161 ~DL~~~~~~r~~s~~~~e~a~~~A~~~ 187 (334)
T PLN00023 161 ADIAPKEGTRGSSGNLVDAARQWVEKQ 187 (334)
T ss_pred ccccccccccccccccHHHHHHHHHHc
Confidence 99975410 1245556666543
No 352
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=86.66 E-value=1.5 Score=36.63 Aligned_cols=78 Identities=18% Similarity=0.081 Sum_probs=44.0
Q ss_pred ccceEEEEEeCCCCCCCCcC-CCCCC-CceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEec--ccCCCHHHH
Q 030407 94 LADYIIYIIDVSGGDKIPRK-GGPGI-TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQV--GWVIGIIFT 169 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~~-~~~qi-~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA--~~g~gi~el 169 (178)
..|.+|-|=|+.-+...... +..++ ...-|||+||.||+++ .+.....+.++..+-. .++..+. .+..++..+
T Consensus 46 ~~D~iiEvrDaRiPLssrn~~~~~~~~~k~riiVlNK~DLad~--~~~k~~iq~~~~~~~~-~~~~~~c~~~~~~~v~~l 122 (335)
T KOG2485|consen 46 LVDCIIEVRDARIPLSSRNELFQDFLPPKPRIIVLNKMDLADP--KEQKKIIQYLEWQNLE-SYIKLDCNKDCNKQVSPL 122 (335)
T ss_pred cccEEEEeeccccCCccccHHHHHhcCCCceEEEEecccccCc--hhhhHHHHHHHhhccc-chhhhhhhhhhhhccccH
Confidence 45889999998655432110 11111 3456999999999997 5666666666544322 3333333 333345555
Q ss_pred HHHHh
Q 030407 170 LSITH 174 (178)
Q Consensus 170 ~~~l~ 174 (178)
+..+.
T Consensus 123 ~~il~ 127 (335)
T KOG2485|consen 123 LKILT 127 (335)
T ss_pred HHHHH
Confidence 54443
No 353
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=86.31 E-value=0.85 Score=42.19 Aligned_cols=61 Identities=18% Similarity=0.253 Sum_probs=39.6
Q ss_pred CCCEEEEeCCcchhhhc--ccc--cccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCc
Q 030407 73 KADLLLCESGGDNLAAN--FSR--ELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 134 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~~--~~~--~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~ 134 (178)
++.+=+|.|.| .+--+ ..+ ...|+.|.|+|+..|...+.. .......+-++++||.|.+..
T Consensus 75 ~~~iNlIDTPG-HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 75 DYRINLIDTPG-HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGA 143 (697)
T ss_pred ceEEEEeCCCC-ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECcccccc
Confidence 36777999999 22111 111 135999999999988654421 111234467999999999866
No 354
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=86.24 E-value=2.8 Score=36.22 Aligned_cols=76 Identities=11% Similarity=0.108 Sum_probs=46.1
Q ss_pred ceEEEEEeCCCCCCCCc-CCC---CCCCceeEEEEecCCCCCchhHhHHHHHHHHHhc----------------------
Q 030407 96 DYIIYIIDVSGGDKIPR-KGG---PGITQADLLVINKTDLASAIGADLAVMERDALRM---------------------- 149 (178)
Q Consensus 96 d~~I~VvD~~~~~~~~~-~~~---~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~---------------------- 149 (178)
|....||.+..+-..-. .+. .-+..+=+++++|+|+.++ .-+++..+.+..+
T Consensus 276 h~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~--~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~A 353 (591)
T KOG1143|consen 276 HFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDR--QGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKA 353 (591)
T ss_pred ceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccc--hhHHHHHHHHHHHHhhcCccccceEeechHHHHHH
Confidence 66677777766543211 111 1245567999999999987 3333322222211
Q ss_pred -----CC-CCCEEEEecccCCCHHHHHHHH
Q 030407 150 -----RD-GGPFIFAQVGWVIGIIFTLSIT 173 (178)
Q Consensus 150 -----np-~a~i~~~SA~~g~gi~el~~~l 173 (178)
.| -.|||.+|..+|+|+.-+-.+|
T Consensus 354 aq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 354 AQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred HHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 11 1499999999999998765544
No 355
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=86.15 E-value=0.8 Score=42.47 Aligned_cols=62 Identities=16% Similarity=0.060 Sum_probs=38.1
Q ss_pred CCCCEEEEeCCcch-hh-hcc-cccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCC
Q 030407 72 FKADLLLCESGGDN-LA-ANF-SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLAS 133 (178)
Q Consensus 72 ~~~d~iiiEttG~~-~~-~~~-~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~ 133 (178)
.++.+.|+.|.|.. .. ... ....+|++++|+|+..+...... .......+-++++||+|...
T Consensus 84 ~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 84 NEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLI 152 (720)
T ss_pred CceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhccc
Confidence 36889999999931 01 111 11246999999999876433211 10112234589999999964
No 356
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.06 E-value=3 Score=37.03 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=57.1
Q ss_pred HhhCCCCEEEEeCCcchhh-hccc--------ccccceEEEEEeCCCCCCCCc---C------CCCCCCceeEEEEecCC
Q 030407 69 SNLFKADLLLCESGGDNLA-ANFS--------RELADYIIYIIDVSGGDKIPR---K------GGPGITQADLLVINKTD 130 (178)
Q Consensus 69 ~~~~~~d~iiiEttG~~~~-~~~~--------~~~ad~~I~VvD~~~~~~~~~---~------~~~qi~~adiiviNK~D 130 (178)
.+..+||+|+|.|.|-..- ++.. ....|.+++|-.+--|.+..+ + ...+-+.-|-++++|.|
T Consensus 462 a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~ltk~d 541 (587)
T KOG0781|consen 462 ARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLTKFD 541 (587)
T ss_pred HHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEEecc
Confidence 4466899999999993110 1111 112388998877654433211 1 11244556899999999
Q ss_pred CCCchhHhHHHHHHHHHhcCCCCCEEEEe------cccCCCHHHHHHHH
Q 030407 131 LASAIGADLAVMERDALRMRDGGPFIFAQ------VGWVIGIIFTLSIT 173 (178)
Q Consensus 131 l~~~~~~~~~~~~~~l~~~np~a~i~~~S------A~~g~gi~el~~~l 173 (178)
.++. .+..+....- -.+.||+++- -+...+++.+...|
T Consensus 542 tv~d---~vg~~~~m~y--~~~~pi~fvg~gqtysdlr~l~v~~vv~~l 585 (587)
T KOG0781|consen 542 TVDD---KVGAAVSMVY--ITGKPILFVGVGQTYSDLRKLNVKAVVATL 585 (587)
T ss_pred chhh---HHHHHhhhee--ecCCceEEEecCcchhhhhhccHHHHHHHh
Confidence 8866 3333333222 2467888763 33445555555444
No 357
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.75 E-value=1.1 Score=38.63 Aligned_cols=68 Identities=19% Similarity=0.242 Sum_probs=39.7
Q ss_pred CEEEEeCCcc-h-----hhhccc--------ccccceEEEEEeCCCCCCCCcCCCC---C---CCceeEEEEecCCCCCc
Q 030407 75 DLLLCESGGD-N-----LAANFS--------RELADYIIYIIDVSGGDKIPRKGGP---G---ITQADLLVINKTDLASA 134 (178)
Q Consensus 75 d~iiiEttG~-~-----~~~~~~--------~~~ad~~I~VvD~~~~~~~~~~~~~---q---i~~adiiviNK~Dl~~~ 134 (178)
.+=||||.|+ + +...|. .+.+|.++.++|+-..+ ....+.+ + -+.--.||+||+|.++.
T Consensus 148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLD-IsdEf~~vi~aLkG~EdkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLD-ISDEFKRVIDALKGHEDKIRVVLNKADQVDT 226 (532)
T ss_pred heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhcc-ccHHHHHHHHHhhCCcceeEEEeccccccCH
Confidence 3568999994 1 111111 13469999999985432 2111111 1 12334899999999988
Q ss_pred hhHhHHHHHHH
Q 030407 135 IGADLAVMERD 145 (178)
Q Consensus 135 ~~~~~~~~~~~ 145 (178)
.++-++...
T Consensus 227 --qqLmRVyGA 235 (532)
T KOG1954|consen 227 --QQLMRVYGA 235 (532)
T ss_pred --HHHHHHHHH
Confidence 676665533
No 358
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=85.27 E-value=1.5 Score=35.33 Aligned_cols=27 Identities=15% Similarity=-0.027 Sum_probs=23.4
Q ss_pred CCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 151 DGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 151 p~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
...|++..||+++.|+++|++.+...+
T Consensus 239 ~~~pv~~gSa~~~~G~~~ll~~~~~~~ 265 (268)
T cd04170 239 LLVPVLCGSALTNIGVRELLDALVHLL 265 (268)
T ss_pred CEEEEEEeeCCCCcCHHHHHHHHHHhC
Confidence 446899999999999999999987653
No 359
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=84.98 E-value=2.9 Score=31.53 Aligned_cols=73 Identities=21% Similarity=0.225 Sum_probs=42.9
Q ss_pred CHHHHHHhhcC-CcEEEEEecCC------CchhHHHHHHcCCCCccceeecccCC-CcccccccccccCHhHHHhhHhhC
Q 030407 1 MLALCKFLRDK-YSLAAVTNDIF------TKEDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNLF 72 (178)
Q Consensus 1 ~~~~~~~~~~~-~~vaVI~nd~g------~~iD~~li~~~~~~~~~~~~~l~~Gc-Cc~l~i~~dl~~~l~~l~~l~~~~ 72 (178)
++++++.|+.+ +|||+|--.-. .+-|.-+..+.|. ..+-+.++. ---++-..+ ..|+.+..+....
T Consensus 19 ie~lv~~L~~~G~rVa~iKH~hh~~~~D~~GkDs~r~~~aGa----~~~v~~s~~~~~~~~~~~~--~~L~~vl~~l~~~ 92 (161)
T COG1763 19 IEKLVRKLKARGYRVATVKHAHHDFDLDKPGKDTYRHRKAGA----DQVVVASDHRTALMTRTPD--RDLDAVLSRLDPL 92 (161)
T ss_pred HHHHHHHHHhCCcEEEEEEecCCCCCCCCCCCccchhhcccc----ceEEEecCCEEEEEEecCC--cCHHHHHHhcCcc
Confidence 46888999875 99999986533 2557777777665 333333444 111110111 3455555544344
Q ss_pred CCCEEEEe
Q 030407 73 KADLLLCE 80 (178)
Q Consensus 73 ~~d~iiiE 80 (178)
+|+++||
T Consensus 93 -~D~vLVE 99 (161)
T COG1763 93 -LDLVLVE 99 (161)
T ss_pred -cCEEEEe
Confidence 7999999
No 360
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=84.46 E-value=9.3 Score=32.08 Aligned_cols=124 Identities=15% Similarity=0.181 Sum_probs=64.1
Q ss_pred HHHHHHhhcC-CcEEEEEecCCCchhH--HHHHHcCC--CCccceeecccCC-CcccccccccccCHhHHHhhHhhCCCC
Q 030407 2 LALCKFLRDK-YSLAAVTNDIFTKEDG--EFLMRNGA--LPEERIRAVETGG-CPHAAIREDISINLGPLEELSNLFKAD 75 (178)
Q Consensus 2 ~~~~~~~~~~-~~vaVI~nd~g~~iD~--~li~~~~~--~~~~~~~~l~~Gc-Cc~l~i~~dl~~~l~~l~~l~~~~~~d 75 (178)
..++++|+++ +|+|||.--.|-.-.+ .++...+. ..+|+-..+..-+ |+-. +..| -..+...+.+.+++|
T Consensus 55 ~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~~~V~-V~~d---R~~~~~~~~~~~~~d 130 (326)
T PF02606_consen 55 IWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGSDAEEVGDEPLLLARKLPVPVI-VGPD---RVAAARAALKEFPAD 130 (326)
T ss_pred HHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCCChhhhcCHHHHHHHhcCCcEE-EeCc---HHHHHHHHHHHCCCC
Confidence 3567888765 9999998877721111 00100000 0011222332222 3322 2111 124555555555688
Q ss_pred EEEEeCCcchhhhcccccccceEEEEEeCCCCCCCCc--------CCCCCCCceeEEEEecCCCCCc
Q 030407 76 LLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPR--------KGGPGITQADLLVINKTDLASA 134 (178)
Q Consensus 76 ~iiiEttG~~~~~~~~~~~ad~~I~VvD~~~~~~~~~--------~~~~qi~~adiiviNK~Dl~~~ 134 (178)
+|+.+= | +.... -..|.-|+++|+.++..... .-...++.||++++||.+....
T Consensus 131 viilDD-G--fQh~~--L~rDl~Ivl~D~~~~~gng~lLPaG~LREp~~~l~rAD~vi~~~~~~~~~ 192 (326)
T PF02606_consen 131 VIILDD-G--FQHRR--LKRDLDIVLVDADRPFGNGFLLPAGPLREPLSALKRADAVIVTGCDASDP 192 (326)
T ss_pred EEEEcC-C--ccccc--ccCCcEEEEEeCCCCCcCCccCCCCcccCChhHhCcccEEEEcCCCcchh
Confidence 888542 2 21111 11388999999876532211 1123578899999999998655
No 361
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=83.48 E-value=0.36 Score=35.98 Aligned_cols=80 Identities=18% Similarity=0.099 Sum_probs=48.9
Q ss_pred ccceEEEEEeCCCCCCCCc---CC------CCCCCceeEEEEecCCCCCchhHhHHHHHHH--HHhcC-CCCCEEEEecc
Q 030407 94 LADYIIYIIDVSGGDKIPR---KG------GPGITQADLLVINKTDLASAIGADLAVMERD--ALRMR-DGGPFIFAQVG 161 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~---~~------~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~--l~~~n-p~a~i~~~SA~ 161 (178)
..|.+|+|+|.++...... .+ ...-+.|..|..||-|++.+ +..+..... +..+. ....|-.+||+
T Consensus 85 nvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta--a~~eeia~klnl~~lrdRswhIq~csal 162 (185)
T KOG0074|consen 85 NVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA--AKVEEIALKLNLAGLRDRSWHIQECSAL 162 (185)
T ss_pred ccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh--cchHHHHHhcchhhhhhceEEeeeCccc
Confidence 4699999999754321111 01 11234578999999999877 333332211 11111 12477889999
Q ss_pred cCCCHHHHHHHHhh
Q 030407 162 WVIGIIFTLSITHY 175 (178)
Q Consensus 162 ~g~gi~el~~~l~~ 175 (178)
+++|+..-.+++..
T Consensus 163 s~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 163 SLEGSTDGSDWVQS 176 (185)
T ss_pred cccCccCcchhhhc
Confidence 99999887777653
No 362
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=82.39 E-value=3.3 Score=36.13 Aligned_cols=90 Identities=12% Similarity=0.055 Sum_probs=50.1
Q ss_pred hCCCCEEEEeCCcchhh---------hc---ccccccceEEEEEeCCCCCCCCcCCCC--CCCceeEEEEecCCCCCchh
Q 030407 71 LFKADLLLCESGGDNLA---------AN---FSRELADYIIYIIDVSGGDKIPRKGGP--GITQADLLVINKTDLASAIG 136 (178)
Q Consensus 71 ~~~~d~iiiEttG~~~~---------~~---~~~~~ad~~I~VvD~~~~~~~~~~~~~--qi~~adiiviNK~Dl~~~~~ 136 (178)
..++|+|||.|.|.+.. .. .......-.++|+|++.+......... ..-..+-+|++|.|-...
T Consensus 297 ~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLDEt~~-- 374 (432)
T PRK12724 297 RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADF-- 374 (432)
T ss_pred hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEcccCCCC--
Confidence 46899999999995311 00 101012357899999876522111100 111247999999998654
Q ss_pred HhHHHHHHHHHhcCCCCCEEEEecccCCCHHH
Q 030407 137 ADLAVMERDALRMRDGGPFIFAQVGWVIGIIF 168 (178)
Q Consensus 137 ~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~e 168 (178)
...+....... +.|+.+++ +|+++.+
T Consensus 375 --~G~il~i~~~~--~lPI~ylt--~GQ~VPe 400 (432)
T PRK12724 375 --LGSFLELADTY--SKSFTYLS--VGQEVPF 400 (432)
T ss_pred --ccHHHHHHHHH--CCCEEEEe--cCCCCCC
Confidence 23344444433 34776665 3555543
No 363
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=82.17 E-value=1.2 Score=40.01 Aligned_cols=81 Identities=16% Similarity=0.012 Sum_probs=49.4
Q ss_pred ccceEEEEEeCCCCCCCC---cCC--------CCCCCceeEEEEecCCCCCchhHhHHH-HHHHHHhcCCC-CCEEEEec
Q 030407 94 LADYIIYIIDVSGGDKIP---RKG--------GPGITQADLLVINKTDLASAIGADLAV-MERDALRMRDG-GPFIFAQV 160 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~---~~~--------~~qi~~adiiviNK~Dl~~~~~~~~~~-~~~~l~~~np~-a~i~~~SA 160 (178)
.+|.+..+....+..... .++ ....+.+.|+|.||+|+.+......+. +...+.+ ++. -.-+.+||
T Consensus 79 kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~-f~EiEtciecSA 157 (625)
T KOG1707|consen 79 KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIA-FAEIETCIECSA 157 (625)
T ss_pred hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHH-hHHHHHHHhhhh
Confidence 357777777766543221 111 123678899999999998652121122 2222221 221 25689999
Q ss_pred ccCCCHHHHHHHHhh
Q 030407 161 GWVIGIIFTLSITHY 175 (178)
Q Consensus 161 ~~g~gi~el~~~l~~ 175 (178)
++-.++.|+|-+-++
T Consensus 158 ~~~~n~~e~fYyaqK 172 (625)
T KOG1707|consen 158 LTLANVSELFYYAQK 172 (625)
T ss_pred hhhhhhHhhhhhhhh
Confidence 999999999977654
No 364
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=81.18 E-value=0.54 Score=36.20 Aligned_cols=62 Identities=27% Similarity=0.266 Sum_probs=33.3
Q ss_pred CCCEEEEeCCcch-hhhccc-----ccccceEEEEEeCCCCCCCCcC------------CCCCCCceeEEEEecCCCCCc
Q 030407 73 KADLLLCESGGDN-LAANFS-----RELADYIIYIIDVSGGDKIPRK------------GGPGITQADLLVINKTDLASA 134 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~~~~~-----~~~ad~~I~VvD~~~~~~~~~~------------~~~qi~~adiiviNK~Dl~~~ 134 (178)
+..+-+|+..|-. +...+. ...+.++|+|+|++........ ....-..+-+|+.||.|+..+
T Consensus 48 ~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 48 GKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp GTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred CCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 4567788999931 221111 1236789999999752110000 001124567999999999875
No 365
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=80.41 E-value=3 Score=34.05 Aligned_cols=64 Identities=16% Similarity=0.103 Sum_probs=35.2
Q ss_pred cceEEEEEeCCC-CCCCCc-CCCCCC--CceeEEEEecCCCCCchhHhHHHHHHHHHhcC--CCCCEEEEec
Q 030407 95 ADYIIYIIDVSG-GDKIPR-KGGPGI--TQADLLVINKTDLASAIGADLAVMERDALRMR--DGGPFIFAQV 160 (178)
Q Consensus 95 ad~~I~VvD~~~-~~~~~~-~~~~qi--~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~n--p~a~i~~~SA 160 (178)
+|.++++++++. +....+ ....++ ..+-++|+||+|+.++ .++..+.+.+++.- -+.++|..+.
T Consensus 115 vh~~ly~i~~~~~~l~~~D~~~lk~l~~~v~vi~VinK~D~l~~--~e~~~~k~~i~~~l~~~~i~~~~~~~ 184 (276)
T cd01850 115 VHACLYFIEPTGHGLKPLDIEFMKRLSKRVNIIPVIAKADTLTP--EELKEFKQRIMEDIEEHNIKIYKFPE 184 (276)
T ss_pred eEEEEEEEeCCCCCCCHHHHHHHHHHhccCCEEEEEECCCcCCH--HHHHHHHHHHHHHHHHcCCceECCCC
Confidence 478889998864 221110 000001 3467999999999876 55544444333221 2356776554
No 366
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.17 E-value=0.65 Score=35.47 Aligned_cols=80 Identities=15% Similarity=0.124 Sum_probs=47.1
Q ss_pred ccceEEEEEeCCCCCCCCcCCC--------CC-CCceeEEEEecCCCCCchhHhHHHHHHHH--Hhc----C------C-
Q 030407 94 LADYIIYIIDVSGGDKIPRKGG--------PG-ITQADLLVINKTDLASAIGADLAVMERDA--LRM----R------D- 151 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~~~~--------~q-i~~adiiviNK~Dl~~~~~~~~~~~~~~l--~~~----n------p- 151 (178)
.+|++|++||+-..+....... +. -..+-+|..||+|...+ ...++++..+ ... + +
T Consensus 87 ~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a--~se~~l~~~l~l~~~t~~~~~v~~~~~~ 164 (193)
T KOG0077|consen 87 QVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA--ASEDELRFHLGLSNFTTGKGKVNLTDSN 164 (193)
T ss_pred hhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc--ccHHHHHHHHHHHHHhcccccccccCCC
Confidence 4689999999976543322110 11 23457899999999876 3333332211 111 0 1
Q ss_pred --CCCEEEEecccCCCHHHHHHHHhh
Q 030407 152 --GGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 152 --~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
-.+++.+|...+.|--+-|.++..
T Consensus 165 ~rp~evfmcsi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 165 VRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred CCeEEEEEEEEEccCccceeeeehhh
Confidence 136788888888886666666543
No 367
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=79.21 E-value=3.2 Score=38.88 Aligned_cols=90 Identities=14% Similarity=0.078 Sum_probs=50.7
Q ss_pred CCCCEEEEeCCcchhh--------hcc-cccccceEEEEEeCCCCCCCC----cCCCCCC-CceeEEEEecCCCCCchhH
Q 030407 72 FKADLLLCESGGDNLA--------ANF-SRELADYIIYIIDVSGGDKIP----RKGGPGI-TQADLLVINKTDLASAIGA 137 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~--------~~~-~~~~ad~~I~VvD~~~~~~~~----~~~~~qi-~~adiiviNK~Dl~~~~~~ 137 (178)
.++|+|||.|.|.+.. ..+ .....+-+++|+|++...+.. ..|.... ..-+-+|++|.|-...
T Consensus 262 ~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~--- 338 (767)
T PRK14723 262 GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLDEATH--- 338 (767)
T ss_pred cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccCCCCC---
Confidence 3689999999994211 111 111125688999997542211 1121110 0246799999998654
Q ss_pred hHHHHHHHHHhcCCCCCEEEEecccCCCH-HHH
Q 030407 138 DLAVMERDALRMRDGGPFIFAQVGWVIGI-IFT 169 (178)
Q Consensus 138 ~~~~~~~~l~~~np~a~i~~~SA~~g~gi-~el 169 (178)
...+...+... ..|+.+++ +|++| +++
T Consensus 339 -~G~iL~i~~~~--~lPI~yit--~GQ~VPdDL 366 (767)
T PRK14723 339 -LGPALDTVIRH--RLPVHYVS--TGQKVPEHL 366 (767)
T ss_pred -ccHHHHHHHHH--CCCeEEEe--cCCCChhhc
Confidence 23344444433 45777776 57777 444
No 368
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=78.00 E-value=4.5 Score=36.45 Aligned_cols=86 Identities=9% Similarity=0.016 Sum_probs=48.0
Q ss_pred CCCCEEEEeCCcchhh-----hc---ccccccceEEEEEeCCCCCCCCc----CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 72 FKADLLLCESGGDNLA-----AN---FSRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~-----~~---~~~~~ad~~I~VvD~~~~~~~~~----~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
.++|+|||+|.|.+.. .. +........++|++++....... .+.. ...+-+|+||+|.... .
T Consensus 427 ~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii~~f~~--~~~~gvILTKlDEt~~----l 500 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRFAH--AKPQGVVLTKLDETGR----F 500 (559)
T ss_pred ccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHHHHHHHh--hCCeEEEEecCcCccc----h
Confidence 3699999999995311 00 11001234678888765321111 1111 1246899999998654 3
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHH
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGII 167 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~ 167 (178)
..+...+... +.|+.+++ +|+++.
T Consensus 501 G~aLsv~~~~--~LPI~yvt--~GQ~VP 524 (559)
T PRK12727 501 GSALSVVVDH--QMPITWVT--DGQRVP 524 (559)
T ss_pred hHHHHHHHHh--CCCEEEEe--CCCCch
Confidence 4444444433 34777776 567763
No 369
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=77.57 E-value=12 Score=28.00 Aligned_cols=77 Identities=23% Similarity=0.095 Sum_probs=41.5
Q ss_pred HHHHHHhhcC-CcEEEEEecCC-C-----chhHHHHHHcCCCCccceeecccCCCcccccccccccCHhHHHhhHhhCCC
Q 030407 2 LALCKFLRDK-YSLAAVTNDIF-T-----KEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKA 74 (178)
Q Consensus 2 ~~~~~~~~~~-~~vaVI~nd~g-~-----~iD~~li~~~~~~~~~~~~~l~~GcCc~l~i~~dl~~~l~~l~~l~~~~~~ 74 (178)
.++++.+..+ +++|+|..+.. . +-|..++...|. ....+.++.=-.+ ++.........+..+....++
T Consensus 19 ~~L~~~l~~~g~~V~~iK~~~~~~~~d~~g~Ds~~~~~aGa----~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 93 (159)
T cd03116 19 EKLIPALSARGLRVAVIKHDHHDFDIDTPGKDSYRHREAGA----EEVLVSSPRRWAL-IRELRDEPEPDLLLLLRLLDV 93 (159)
T ss_pred HHHHHHHHHcCCcEEEEEecCCcccccCccchHHHHHHcCC----CEEEEecCCeEEE-EEEcCCCccccHHHHhhCCCC
Confidence 5677777654 89999998754 3 347777777776 3344444431111 011000000111111112368
Q ss_pred CEEEEeCCc
Q 030407 75 DLLLCESGG 83 (178)
Q Consensus 75 d~iiiEttG 83 (178)
|+|+||.-.
T Consensus 94 D~vlvEG~k 102 (159)
T cd03116 94 DLVLVEGFK 102 (159)
T ss_pred CEEEEccCC
Confidence 999999888
No 370
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=77.11 E-value=6.1 Score=34.04 Aligned_cols=88 Identities=8% Similarity=-0.042 Sum_probs=50.5
Q ss_pred hCCCCEEEEeCCcchhhh---------ccccccc-ceEEEEEeCCCCCCCCcCCCCCCC--ceeEEEEecCCCCCchhHh
Q 030407 71 LFKADLLLCESGGDNLAA---------NFSRELA-DYIIYIIDVSGGDKIPRKGGPGIT--QADLLVINKTDLASAIGAD 138 (178)
Q Consensus 71 ~~~~d~iiiEttG~~~~~---------~~~~~~a-d~~I~VvD~~~~~~~~~~~~~qi~--~adiiviNK~Dl~~~~~~~ 138 (178)
..++|+|+|.|.|-+... ....... .-.++|+|++.+..........+. ..+-++++|.|-...
T Consensus 252 ~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlDet~~---- 327 (388)
T PRK12723 252 SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETTC---- 327 (388)
T ss_pred hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeccCCCc----
Confidence 357999999999943211 1111111 358899999876432211111121 257899999998654
Q ss_pred HHHHHHHHHhcCCCCCEEEEecccCCCH
Q 030407 139 LAVMERDALRMRDGGPFIFAQVGWVIGI 166 (178)
Q Consensus 139 ~~~~~~~l~~~np~a~i~~~SA~~g~gi 166 (178)
...+...+... ..|+.+++ +|+++
T Consensus 328 ~G~~l~~~~~~--~~Pi~yit--~Gq~v 351 (388)
T PRK12723 328 VGNLISLIYEM--RKEVSYVT--DGQIV 351 (388)
T ss_pred chHHHHHHHHH--CCCEEEEe--CCCCC
Confidence 33444444433 34776666 57777
No 371
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=77.10 E-value=11 Score=26.54 Aligned_cols=90 Identities=17% Similarity=0.194 Sum_probs=42.8
Q ss_pred HHHHHhhc-CCcEEEEEecCCCchhHHHHHHcC-CCC---ccceeecccCC-CcccccccccccCHhHHHhhHhhCCCCE
Q 030407 3 ALCKFLRD-KYSLAAVTNDIFTKEDGEFLMRNG-ALP---EERIRAVETGG-CPHAAIREDISINLGPLEELSNLFKADL 76 (178)
Q Consensus 3 ~~~~~~~~-~~~vaVI~nd~g~~iD~~li~~~~-~~~---~~~~~~l~~Gc-Cc~l~i~~dl~~~l~~l~~l~~~~~~d~ 76 (178)
.+.+++.+ ++|+.+|--|+..-.+ .+..+.+ ... .........|| |.. ...++.+.......++|+
T Consensus 18 ~la~~l~~~g~~V~~id~D~~~~~~-~~~~~~~~~~~~i~~g~~~~~~~g~~~~~-------n~~~~~~l~~~~~~~~~~ 89 (116)
T cd02034 18 LLARYLAEKGKPVLAIDADPDDLPE-RLSVEVGEIKLLLVMGMGRPGGEGCYCPE-------NALLNALLRHLVLTRDEQ 89 (116)
T ss_pred HHHHHHHHCCCcEEEEECCchhhHH-HHhhccCCceEEEEecccccCCCCCEehh-------hHHHHHHHHHeEccCCCE
Confidence 34455654 4889999988732222 2222221 100 01112334566 553 112333322222457899
Q ss_pred EEEeCCcchhhhccc--ccccceEEEE
Q 030407 77 LLCESGGDNLAANFS--RELADYIIYI 101 (178)
Q Consensus 77 iiiEttG~~~~~~~~--~~~ad~~I~V 101 (178)
++++|.+ .+..... ...+|.+++|
T Consensus 90 vivDt~a-g~e~~~~~~~~~~d~vv~v 115 (116)
T cd02034 90 VVVDTEA-GLEHLGRGTAEGVDLLVVV 115 (116)
T ss_pred EEEecHH-HHHHHHhhccccCCEEEEe
Confidence 9999998 3331111 1235666654
No 372
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=76.56 E-value=14 Score=28.16 Aligned_cols=34 Identities=18% Similarity=0.079 Sum_probs=23.5
Q ss_pred HHHHHHhhc-CCcEEEEEecCC-C-----chhHHHHHHcCC
Q 030407 2 LALCKFLRD-KYSLAAVTNDIF-T-----KEDGEFLMRNGA 35 (178)
Q Consensus 2 ~~~~~~~~~-~~~vaVI~nd~g-~-----~iD~~li~~~~~ 35 (178)
.++++.+.. +.|+|+|..+-. . +-|...+.+.|.
T Consensus 24 ~~li~~l~~~g~~vg~Ik~~~~~~~~d~~g~Ds~~~r~aGA 64 (173)
T PRK10751 24 KKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGA 64 (173)
T ss_pred HHHHHHHhhcCCeEEEEEEcCCCcccCCCCcHHHHHHHhCC
Confidence 567777766 489999998433 2 346777776665
No 373
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=75.21 E-value=6.4 Score=34.86 Aligned_cols=57 Identities=11% Similarity=0.151 Sum_probs=42.4
Q ss_pred CCceeEEEEecCCCCCch-------hHhHHHHHHHHHhc--CCCCCEEEEecccCCCHHHHHHHHh
Q 030407 118 ITQADLLVINKTDLASAI-------GADLAVMERDALRM--RDGGPFIFAQVGWVIGIIFTLSITH 174 (178)
Q Consensus 118 i~~adiiviNK~Dl~~~~-------~~~~~~~~~~l~~~--np~a~i~~~SA~~g~gi~el~~~l~ 174 (178)
+..+-+||++|+|..... .+....+.+.+|.. .-+|.+++||.+...+++-|..+|.
T Consensus 195 lGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~ 260 (472)
T PF05783_consen 195 LGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYIL 260 (472)
T ss_pred cCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHH
Confidence 556789999999986420 13344566777754 4678999999999999998888754
No 374
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=71.46 E-value=21 Score=29.22 Aligned_cols=75 Identities=16% Similarity=-0.016 Sum_probs=43.1
Q ss_pred CHHHHHHhhcCCcEEEEEecCC-----CchhHHHHHHcCCCCccceeecccCCCcccccccccccCHhHHHhhHhhCCCC
Q 030407 1 MLALCKFLRDKYSLAAVTNDIF-----TKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKAD 75 (178)
Q Consensus 1 ~~~~~~~~~~~~~vaVI~nd~g-----~~iD~~li~~~~~~~~~~~~~l~~GcCc~l~i~~dl~~~l~~l~~l~~~~~~d 75 (178)
+.+|++.|+++-|||+|..|.. .+-|..+....|.. .+.-+ ++.-..+ ... ...+..+...+. .++|
T Consensus 18 i~~Li~~L~~~G~V~~IKhd~h~~~~~~g~Ds~~~~~aGa~---~v~~~-s~~~~~~-~~~--~~~l~~~l~~l~-~~~D 89 (274)
T PRK14493 18 VERLVDRLSGRGRVGTVKHMDTERLNPDGTDTGRHFDAGAD---VVYGL-TDGEWVA-SGR--DRSLDDALDDLA-PGMD 89 (274)
T ss_pred HHHHHHHHHhCCCEEEEEEcCCCcCCCCCCCcHHHHHCCCc---EEEEe-cCCeEEE-Eec--CCCHHHHHHhhC-cCCC
Confidence 3578888876448999999963 25677776666651 22222 2221111 011 123433333332 4799
Q ss_pred EEEEeCCc
Q 030407 76 LLLCESGG 83 (178)
Q Consensus 76 ~iiiEttG 83 (178)
+||||+-+
T Consensus 90 ~vlVEG~k 97 (274)
T PRK14493 90 YAVVEGFK 97 (274)
T ss_pred EEEEECCC
Confidence 99999988
No 375
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=70.57 E-value=15 Score=31.23 Aligned_cols=73 Identities=23% Similarity=0.272 Sum_probs=41.3
Q ss_pred HHHHHHhhcCCcEEEEEec-----CC-CchhHHHHHHcCCCCccceeecccCC-CcccccccccccCHhHHHhhHhhCCC
Q 030407 2 LALCKFLRDKYSLAAVTND-----IF-TKEDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNLFKA 74 (178)
Q Consensus 2 ~~~~~~~~~~~~vaVI~nd-----~g-~~iD~~li~~~~~~~~~~~~~l~~Gc-Cc~l~i~~dl~~~l~~l~~l~~~~~~ 74 (178)
.++++.++++.|||+|..+ +- -+-|..++.+.|. ..+.+.++. -+.+.-+.. .....+....+.
T Consensus 23 ~~l~~~l~~~~~V~~ik~~~~~~~~d~~~~d~~~~~~aga----~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 93 (369)
T PRK14490 23 TALVRRLSERFSVGYYKHGCHRFDIDREGKDSDLARKAGA----STVMISDPEKHALIAGGPP-----DPLLERGAFLDC 93 (369)
T ss_pred HHHHHHHhhCceEEEEEeCCCCCCCCcccchHHHHHhccC----cEEEEecCCEEEEEEeCCC-----ChHHHHhccCCC
Confidence 5677888766999999963 22 2567777776665 334555544 332110110 111112212368
Q ss_pred CEEEEeCCc
Q 030407 75 DLLLCESGG 83 (178)
Q Consensus 75 d~iiiEttG 83 (178)
|+||+|---
T Consensus 94 D~vlvEG~k 102 (369)
T PRK14490 94 DLLLVEGLK 102 (369)
T ss_pred CEEEECCCC
Confidence 999999665
No 376
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=68.35 E-value=7.7 Score=31.53 Aligned_cols=26 Identities=12% Similarity=-0.111 Sum_probs=22.4
Q ss_pred CCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 151 DGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 151 p~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...||+..||.++.|+..|++.+...
T Consensus 241 ~~~PV~~gSa~~~~Gi~~lld~i~~~ 266 (270)
T cd01886 241 KIVPVLCGSAFKNKGVQPLLDAVVDY 266 (270)
T ss_pred cEEEEEeCcCCCCcCHHHHHHHHHHh
Confidence 44689999999999999999988654
No 377
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=68.28 E-value=5.4 Score=29.15 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=31.8
Q ss_pred CCCEEEEeCCcchh--------hhcccccccceEEEEEeCCCCCCCCcC-----CCCCCCceeEEEEecC
Q 030407 73 KADLLLCESGGDNL--------AANFSRELADYIIYIIDVSGGDKIPRK-----GGPGITQADLLVINKT 129 (178)
Q Consensus 73 ~~d~iiiEttG~~~--------~~~~~~~~ad~~I~VvD~~~~~~~~~~-----~~~qi~~adiiviNK~ 129 (178)
..++.||.|.|..- ...+. ..+|.+++|+++.+....... ........-++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~-~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYL-PKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHH-STTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhh-ccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 46789999999521 11122 347999999999875432210 0111222258888885
No 378
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=67.77 E-value=18 Score=31.52 Aligned_cols=54 Identities=13% Similarity=0.006 Sum_probs=36.8
Q ss_pred CCceeEEEEecCCCCCchhHhHHH----HHHHHHhc---------------------CC---CCCEEEEecccCCCHHHH
Q 030407 118 ITQADLLVINKTDLASAIGADLAV----MERDALRM---------------------RD---GGPFIFAQVGWVIGIIFT 169 (178)
Q Consensus 118 i~~adiiviNK~Dl~~~~~~~~~~----~~~~l~~~---------------------np---~a~i~~~SA~~g~gi~el 169 (178)
+..+.++|++|+|..++ --+++ +.+.++.- +| -.|||.+|..+|++++-|
T Consensus 272 L~VPVfvVVTKIDMCPA--NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL 349 (641)
T KOG0463|consen 272 LHVPVFVVVTKIDMCPA--NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL 349 (641)
T ss_pred hcCcEEEEEEeeccCcH--HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH
Confidence 45678999999999876 44443 23333320 01 148999999999999877
Q ss_pred HHHH
Q 030407 170 LSIT 173 (178)
Q Consensus 170 ~~~l 173 (178)
..+|
T Consensus 350 kmFL 353 (641)
T KOG0463|consen 350 KMFL 353 (641)
T ss_pred HHHH
Confidence 6655
No 379
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=67.21 E-value=29 Score=29.13 Aligned_cols=114 Identities=19% Similarity=0.244 Sum_probs=58.9
Q ss_pred HHHHHHhhc-CCcEEEEEecCC-CchhHH-HH------HHcCCCCccceeeccc--CCCcccccccccccCHhHHHhhHh
Q 030407 2 LALCKFLRD-KYSLAAVTNDIF-TKEDGE-FL------MRNGALPEERIRAVET--GGCPHAAIREDISINLGPLEELSN 70 (178)
Q Consensus 2 ~~~~~~~~~-~~~vaVI~nd~g-~~iD~~-li------~~~~~~~~~~~~~l~~--GcCc~l~i~~dl~~~l~~l~~l~~ 70 (178)
..+++++++ ++|+|||---.| ..-... ++ +..| +.-..|.. ++ ... +..| -..+...+.+
T Consensus 69 ~~L~~~l~~~g~~~~ilsRGYg~~~~~~~~~v~~~~~~~~~G----DEp~lla~~~~~-~V~-V~~d---R~~~~~~~~~ 139 (325)
T PRK00652 69 IALAEQLQARGLKPGVVSRGYGGKLEKGPLLVDPDHTAAEVG----DEPLLIARRTGA-PVA-VSPD---RVAAARALLA 139 (325)
T ss_pred HHHHHHHHHCCCeEEEECCCCCCCcCCCCEEeCCCCChhhhC----cHHHHhccCCCc-eEE-EcCc---HHHHHHHHHh
Confidence 456777875 499999988776 221110 00 1112 12233333 33 211 1111 1234444443
Q ss_pred hCCCCEEEEeCCcchhhhcccccccceEEEEEeCCCCCCCCcC--------CCCCCCceeEEEEecC
Q 030407 71 LFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRK--------GGPGITQADLLVINKT 129 (178)
Q Consensus 71 ~~~~d~iiiEttG~~~~~~~~~~~ad~~I~VvD~~~~~~~~~~--------~~~qi~~adiiviNK~ 129 (178)
..++|+|+.+= | ...... ..|.-|+++|+.++.....- -...++.||++++|+.
T Consensus 140 ~~~~dviilDD-G--fQh~~l--~rdl~Ivl~d~~~~fgng~~LPaG~LREp~~~l~rAd~vv~~~~ 201 (325)
T PRK00652 140 AHGADIIILDD-G--LQHYRL--ARDIEIVVVDGQRGFGNGFLLPAGPLREPPSRLKSVDAVIVNGG 201 (325)
T ss_pred cCCCCEEEEcC-C--ccCccc--CCCeEEEEECCCCCCCCCccCCCcCccCChhHhccCCEEEEeCC
Confidence 44889988552 3 211111 13888999999765322111 1125788999999994
No 380
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=66.41 E-value=35 Score=28.77 Aligned_cols=83 Identities=19% Similarity=0.175 Sum_probs=47.8
Q ss_pred ccceEEEEEeCCCCCCCCcC-------------------CCCCCCceeEEEEecCCCCCc--------------hh-HhH
Q 030407 94 LADYIIYIIDVSGGDKIPRK-------------------GGPGITQADLLVINKTDLASA--------------IG-ADL 139 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~~-------------------~~~qi~~adiiviNK~Dl~~~--------------~~-~~~ 139 (178)
..+++++|+|.++.+..... .+..-..+-++++||.|+..+ .+ ...
T Consensus 207 ~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~ 286 (342)
T smart00275 207 NVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDY 286 (342)
T ss_pred CCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCH
Confidence 35889999999875321100 001123567999999998421 00 112
Q ss_pred HH----HHHHHHhcCC-----CCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AV----MERDALRMRD-----GGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~----~~~~l~~~np-----~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+. +.+....+++ ....+.|+|..-..+..+|+.+...
T Consensus 287 ~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~ 332 (342)
T smart00275 287 EAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDI 332 (342)
T ss_pred HHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHH
Confidence 22 3333333332 1344678899889999998876543
No 381
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=64.13 E-value=11 Score=30.13 Aligned_cols=72 Identities=17% Similarity=0.179 Sum_probs=37.7
Q ss_pred cceEEEEEeCCCCCCCCc------------CCCCCCCceeEEEEecCCCCCchhHhHHH--------HHHHHHhcCCC-C
Q 030407 95 ADYIIYIIDVSGGDKIPR------------KGGPGITQADLLVINKTDLASAIGADLAV--------MERDALRMRDG-G 153 (178)
Q Consensus 95 ad~~I~VvD~~~~~~~~~------------~~~~qi~~adiiviNK~Dl~~~~~~~~~~--------~~~~l~~~np~-a 153 (178)
.+++|+|+|+...+.... .+.+ ...-.+++.|+|+.++ +..+. +.+.+...++. .
T Consensus 77 v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp--~~~v~vfiHK~D~l~~--~~r~~~~~~~~~~i~~~~~~~~~~~~ 152 (232)
T PF04670_consen 77 VGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSP--NIKVFVFIHKMDLLSE--DEREEIFRDIQQRIRDELEDLGIEDI 152 (232)
T ss_dssp ESEEEEEEETT-STCHHHHHHHHHHHHHHHHHST--T-EEEEEEE-CCCS-H--HHHHHHHHHHHHHHHHHHHHTT-TSE
T ss_pred cCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCC--CCeEEEEEeecccCCH--HHHHHHHHHHHHHHHHHhhhccccce
Confidence 578999999984321100 0112 2335899999999976 33332 22333333322 5
Q ss_pred CEEEEecccCCCHHHHHH
Q 030407 154 PFIFAQVGWVIGIIFTLS 171 (178)
Q Consensus 154 ~i~~~SA~~g~gi~el~~ 171 (178)
.++.||-.. +.+.+-|-
T Consensus 153 ~~~~TSI~D-~Sly~A~S 169 (232)
T PF04670_consen 153 TFFLTSIWD-ESLYEAWS 169 (232)
T ss_dssp EEEEE-TTS-THHHHHHH
T ss_pred EEEeccCcC-cHHHHHHH
Confidence 788888665 55555444
No 382
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=63.70 E-value=35 Score=30.14 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=32.4
Q ss_pred CCCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEeccc--CCCHHHHHHH
Q 030407 117 GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGW--VIGIIFTLSI 172 (178)
Q Consensus 117 qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~--g~gi~el~~~ 172 (178)
.+..+-++|+||+|-.++ + ...+.+.+++.. ..|++.+|+.+ .+.|..+++.
T Consensus 178 ~~~kPfiivlN~~dp~~~--e-t~~l~~~l~eky-~vpvl~v~c~~l~~~DI~~il~~ 231 (492)
T TIGR02836 178 ELNKPFIILLNSTHPYHP--E-TEALRQELEEKY-DVPVLAMDVESMRESDILSVLEE 231 (492)
T ss_pred hcCCCEEEEEECcCCCCc--h-hHHHHHHHHHHh-CCceEEEEHHHcCHHHHHHHHHH
Confidence 356778999999995444 2 233334444433 26888888754 5566666664
No 383
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=62.11 E-value=12 Score=30.29 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=22.7
Q ss_pred CCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 151 DGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 151 p~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...|++..||.++.|+..|++.|...
T Consensus 238 ~~~Pv~~gsa~~~~Gv~~Lld~i~~~ 263 (267)
T cd04169 238 ELTPVFFGSALNNFGVQELLDALVDL 263 (267)
T ss_pred CEEEEEecccccCcCHHHHHHHHHHH
Confidence 44699999999999999999988764
No 384
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=61.71 E-value=21 Score=32.31 Aligned_cols=54 Identities=15% Similarity=0.062 Sum_probs=40.0
Q ss_pred CCCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEec--ccCCCHHHHHHHHh
Q 030407 117 GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQV--GWVIGIIFTLSITH 174 (178)
Q Consensus 117 qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA--~~g~gi~el~~~l~ 174 (178)
++..+-+|+|||.|.-++ ++++.++++.++. +.++..+.+ +-|+|-.+|-+.+-
T Consensus 370 ~FGvPvVVAINKFd~DTe--~Ei~~I~~~c~e~--Gv~va~~~~~~~Gg~Gai~LA~aVv 425 (557)
T PRK13505 370 KFGVPVVVAINKFVTDTD--AEIAALKELCEEL--GVEVALSEVWAKGGEGGVELAEKVV 425 (557)
T ss_pred HcCCCEEEEEeCCCCCCH--HHHHHHHHHHHHc--CCCEEEecccccCCcchHHHHHHHH
Confidence 366788999999999877 8999999999865 346654443 45888777766543
No 385
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=61.19 E-value=18 Score=27.47 Aligned_cols=75 Identities=17% Similarity=0.188 Sum_probs=46.0
Q ss_pred ceEEEEEeCCCCCCCCc--CCCCCC----Cce-eEEEEecCCCC---CchhHhHHHH----HHHHHhcCCCCCEEEEecc
Q 030407 96 DYIIYIIDVSGGDKIPR--KGGPGI----TQA-DLLVINKTDLA---SAIGADLAVM----ERDALRMRDGGPFIFAQVG 161 (178)
Q Consensus 96 d~~I~VvD~~~~~~~~~--~~~~qi----~~a-diiviNK~Dl~---~~~~~~~~~~----~~~l~~~np~a~i~~~SA~ 161 (178)
-.+++++|.++...... .+..|- +.| -++|.+|-|+- ++ +..+.+ +++.+.+ .|+.+++|+-
T Consensus 94 vaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~--e~Q~~I~~qar~YAk~m--nAsL~F~Sts 169 (205)
T KOG1673|consen 94 VAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPP--ELQETISRQARKYAKVM--NASLFFCSTS 169 (205)
T ss_pred EEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCH--HHHHHHHHHHHHHHHHh--CCcEEEeecc
Confidence 45788999877532211 111111 112 48999999974 22 333333 3333433 5799999999
Q ss_pred cCCCHHHHHHHHh
Q 030407 162 WVIGIIFTLSITH 174 (178)
Q Consensus 162 ~g~gi~el~~~l~ 174 (178)
...+++++|..+.
T Consensus 170 ~sINv~KIFK~vl 182 (205)
T KOG1673|consen 170 HSINVQKIFKIVL 182 (205)
T ss_pred ccccHHHHHHHHH
Confidence 9999999998643
No 386
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=60.45 E-value=29 Score=25.80 Aligned_cols=94 Identities=24% Similarity=0.251 Sum_probs=51.7
Q ss_pred HHHHHHhhcCCcEEEEEecCCCchhHHHHHHcCCCCccceeecccCC-Ccc-cccccccccCHhHHHhhHhhCCCCEEEE
Q 030407 2 LALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGG-CPH-AAIREDISINLGPLEELSNLFKADLLLC 79 (178)
Q Consensus 2 ~~~~~~~~~~~~vaVI~nd~g~~iD~~li~~~~~~~~~~~~~l~~Gc-Cc~-l~i~~dl~~~l~~l~~l~~~~~~d~iii 79 (178)
.+++++|.++.++-||.|.+.+- ..+.+..+. +++-+ +|- ... ... .+. .++..+ ++..+|+-|+
T Consensus 32 ~~la~~L~~~~~ltVvTnsl~ia--~~l~~~~~~----~vi~~-GG~~~~~~~~~----~G~-~a~~~l-~~~~~d~afi 98 (161)
T PF00455_consen 32 LELAKYLPDKKNLTVVTNSLPIA--NELSENPNI----EVILL-GGEVNPKSLSF----VGP-IALEAL-RQFRFDKAFI 98 (161)
T ss_pred HHHHHHhhcCCceEEEECCHHHH--HHHHhcCce----EEEEe-CCEEEcCCCcE----ECc-hHHHHH-HhhccceEEe
Confidence 35678888767999999997621 122222222 33333 343 431 100 111 333333 4778999999
Q ss_pred eCCcchhh-hcc--cc----------cccceEEEEEeCCCCC
Q 030407 80 ESGGDNLA-ANF--SR----------ELADYIIYIIDVSGGD 108 (178)
Q Consensus 80 EttG~~~~-~~~--~~----------~~ad~~I~VvD~~~~~ 108 (178)
-+.|+... ..+ .. ..+.-++.+.|.+...
T Consensus 99 ~~~gi~~~~G~~~~~~~~a~vk~~~~~~s~~~ill~D~sKf~ 140 (161)
T PF00455_consen 99 GADGISEEGGLTTSDEEEAEVKRAMIENSKQVILLADSSKFG 140 (161)
T ss_pred cccEecCCCccccchHHHHHHHHHHHHhcCeEEEEeChhhcC
Confidence 99996431 111 00 1246789999987643
No 387
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=60.01 E-value=32 Score=28.68 Aligned_cols=64 Identities=16% Similarity=0.159 Sum_probs=38.2
Q ss_pred hHHHhhHhhCCCCEEEEeCCcchhhhcccccccceEEEEEeCCCCCCCC--------cCCCCCCCceeEEEEecCCC
Q 030407 63 GPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIP--------RKGGPGITQADLLVINKTDL 131 (178)
Q Consensus 63 ~~l~~l~~~~~~d~iiiEttG~~~~~~~~~~~ad~~I~VvD~~~~~~~~--------~~~~~qi~~adiiviNK~Dl 131 (178)
.+...+.+..++|+|+.+= | +.. +. -..|.-|+++|+.++.... +.-..+++.||++++||.+-
T Consensus 111 ~a~~~~~~~~~~dviilDD-G--fQh-~~-l~rD~~IvlvD~~~~fgng~lLPaGpLREp~~~l~raD~vvv~~~~~ 182 (311)
T TIGR00682 111 DAILLILEQLDPDVIILDD-G--LQH-RK-LHRDVEIVVVDGQRPFGNGFLLPAGPLREFPKRLKSADAVIVNGGEN 182 (311)
T ss_pred HHHHHHHhcCCCCEEEECC-C--CcC-cc-ccCCeEEEEECCCCCCCCCcccCCcCCCCChhhhhhCCEEEEeCCcc
Confidence 3444444445789888542 3 211 11 1138899999997753221 11223578899999999854
No 388
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=59.45 E-value=44 Score=24.24 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=20.3
Q ss_pred HHHHHHhhc-CCcEEEEEecC------C-CchhHHHHHHcCC
Q 030407 2 LALCKFLRD-KYSLAAVTNDI------F-TKEDGEFLMRNGA 35 (178)
Q Consensus 2 ~~~~~~~~~-~~~vaVI~nd~------g-~~iD~~li~~~~~ 35 (178)
.++++++.+ ++|+++|.+.- . -+-|..++ +.|.
T Consensus 18 ~~Li~~l~~~g~~v~~ik~~~~g~~~~d~pG~Dt~r~-~aGA 58 (140)
T PF03205_consen 18 RKLINELKRRGYRVAVIKHTDHGQFEIDPPGTDTWRF-KAGA 58 (140)
T ss_dssp HHHHHHHHHTT--EEEEEE-STTSTTCSTTCHHHHHH-HCT-
T ss_pred HHHHHHHhHcCCceEEEEEccCCCcccCCCCcccccc-cccc
Confidence 567888875 59999887642 2 24488888 7775
No 389
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=58.59 E-value=40 Score=26.87 Aligned_cols=113 Identities=13% Similarity=0.073 Sum_probs=57.2
Q ss_pred HHHHHhhcCCcEEEEEecCCCchhHHHHHHcCCCCccceeecccCC-CcccccccccccCHhHHHhhHhhCCCCEEEEeC
Q 030407 3 ALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNLFKADLLLCES 81 (178)
Q Consensus 3 ~~~~~~~~~~~vaVI~nd~g~~iD~~li~~~~~~~~~~~~~l~~Gc-Cc~l~i~~dl~~~l~~l~~l~~~~~~d~iiiEt 81 (178)
.++++|..+ .+-||.|.+.+- ..+....++ .++ +.+|. -..-. -+.+. .++ +.+++..+|+.|+.+
T Consensus 107 ~l~~~L~~~-~ltVvTNs~~ia--~~l~~~~~~----~vi-l~GG~~~~~~~---~~~G~-~a~-~~l~~~~~d~afis~ 173 (240)
T PRK10411 107 YLARQLPDI-NIQVFTNSHPIC--QELGKRERI----QLI-SSGGTLERKYG---CYVNP-SLI-SQLKSLEIDLFIFSC 173 (240)
T ss_pred HHHHhhCCC-CeEEEeCCHHHH--HHHhcCCCC----EEE-EECCEEeCCCC---ceECH-HHH-HHHHhcCCCEEEEec
Confidence 456777643 799999997621 112222222 333 33443 22100 00111 233 333477999999999
Q ss_pred Ccchhh---hcccc----------cccceEEEEEeCCCCCCCCcCCCCCCCceeEEEEec
Q 030407 82 GGDNLA---ANFSR----------ELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINK 128 (178)
Q Consensus 82 tG~~~~---~~~~~----------~~ad~~I~VvD~~~~~~~~~~~~~qi~~adiiviNK 128 (178)
+|+... ..... ..+.-+++++|.+............+...|.++-++
T Consensus 174 ~gi~~~~G~~~~~~~ea~~k~~~~~~a~~~ill~D~sKf~~~~~~~~~~l~~id~lITD~ 233 (240)
T PRK10411 174 EGIDSSGALWDSNAINADYKSMLLKRAAQSLLLIDKSKFNRSGEARIGHLDEVTHIISDE 233 (240)
T ss_pred eeECCCCCcccCCHHHHHHHHHHHHHhCcEEEEEeccccCCccceEecCHHHCCEEEECC
Confidence 996321 11111 124668999998765432221112345556666554
No 390
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=58.39 E-value=5.8 Score=32.88 Aligned_cols=76 Identities=12% Similarity=0.017 Sum_probs=43.2
Q ss_pred EEEEEeCCCCCCCCc----CCCCCCCceeEEEEecCCCCCchh-------HhHHH-HHHHHHhcCC-CCCEEEEecccCC
Q 030407 98 IIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIG-------ADLAV-MERDALRMRD-GGPFIFAQVGWVI 164 (178)
Q Consensus 98 ~I~VvD~~~~~~~~~----~~~~qi~~adiiviNK~Dl~~~~~-------~~~~~-~~~~l~~~np-~a~i~~~SA~~g~ 164 (178)
+..++|++-+....+ .+.++-..+-.+|+||+|...... ..... +....+...+ ..|++.+|+.++.
T Consensus 223 ~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~ 302 (320)
T KOG2486|consen 223 VFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSL 302 (320)
T ss_pred eeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceeeeccccc
Confidence 445666655433222 122333445699999999865421 11111 3333333332 2478899999999
Q ss_pred CHHHHHHHH
Q 030407 165 GIIFTLSIT 173 (178)
Q Consensus 165 gi~el~~~l 173 (178)
|+++|+=.+
T Consensus 303 Grd~Ll~~i 311 (320)
T KOG2486|consen 303 GRDLLLLHI 311 (320)
T ss_pred Cceeeeeeh
Confidence 999986433
No 391
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=56.15 E-value=1.5 Score=30.13 Aligned_cols=55 Identities=25% Similarity=0.244 Sum_probs=29.8
Q ss_pred EEEEeCCcchhhhc---ccccccceEEEEEeCCCCCCCCc------CCCC----CCCceeEEEEecCC
Q 030407 76 LLLCESGGDNLAAN---FSRELADYIIYIIDVSGGDKIPR------KGGP----GITQADLLVINKTD 130 (178)
Q Consensus 76 ~iiiEttG~~~~~~---~~~~~ad~~I~VvD~~~~~~~~~------~~~~----qi~~adiiviNK~D 130 (178)
+.+.|+.|...... .....+|++++|+|.++...... .+.. .-..+-++|.||.|
T Consensus 52 ~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 52 LQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 67788888422111 11234699999999887542211 0000 01256688888887
No 392
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=55.77 E-value=53 Score=27.27 Aligned_cols=83 Identities=17% Similarity=0.087 Sum_probs=48.3
Q ss_pred ccceEEEEEeCCCCCCCCcC------C------------CCC-CCceeEEEEecCCCCCc--------------h--hHh
Q 030407 94 LADYIIYIIDVSGGDKIPRK------G------------GPG-ITQADLLVINKTDLASA--------------I--GAD 138 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~~------~------------~~q-i~~adiiviNK~Dl~~~--------------~--~~~ 138 (178)
.++++++|+|.++.+..... . .+. -..+-++++||.|+..+ . +..
T Consensus 184 ~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~ 263 (317)
T cd00066 184 DVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPND 263 (317)
T ss_pred CCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCC
Confidence 46889999999875432110 0 011 23578999999996321 0 012
Q ss_pred HHHHHHHHH----hcCC----CCCEEEEecccCCCHHHHHHHHhhh
Q 030407 139 LAVMERDAL----RMRD----GGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 139 ~~~~~~~l~----~~np----~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+...++++ ++++ ....+.|+|..-+.+..+|+.+...
T Consensus 264 ~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~ 309 (317)
T cd00066 264 YEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDI 309 (317)
T ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHH
Confidence 233333333 2322 2345678899889999988876543
No 393
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=54.97 E-value=64 Score=22.00 Aligned_cols=53 Identities=13% Similarity=0.051 Sum_probs=32.4
Q ss_pred CCceeEEEEecCCCCCchhHhHH--HHHHHHHhcC-CCCCEEEEecccCCCHHHHHHH
Q 030407 118 ITQADLLVINKTDLASAIGADLA--VMERDALRMR-DGGPFIFAQVGWVIGIIFTLSI 172 (178)
Q Consensus 118 i~~adiiviNK~Dl~~~~~~~~~--~~~~~l~~~n-p~a~i~~~SA~~g~gi~el~~~ 172 (178)
.+.||++|+|=+=-..+ ++.+ .....+++.+ |.++++.+-......=+++.+.
T Consensus 34 ~e~AD~iiiNTC~V~~~--Ae~k~~~~i~~l~~~~~~~~~ivv~GC~aq~~~~~l~~~ 89 (98)
T PF00919_consen 34 PEEADVIIINTCTVRES--AEQKSRNRIRKLKKLKKPGAKIVVTGCMAQRYGEELKKE 89 (98)
T ss_pred cccCCEEEEEcCCCCcH--HHHHHHHHHHHHHHhcCCCCEEEEEeCccccChHHHHhh
Confidence 36789999998887665 3322 2223333444 8888888876655544555443
No 394
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=54.65 E-value=66 Score=25.80 Aligned_cols=112 Identities=17% Similarity=0.213 Sum_probs=60.0
Q ss_pred HHHHHhhcCCcEEEEEecCCCchhHHHHHHcCCCCccceeecccCC-CcccccccccccCH--hHHHhhHhhCCCCEEEE
Q 030407 3 ALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINL--GPLEELSNLFKADLLLC 79 (178)
Q Consensus 3 ~~~~~~~~~~~vaVI~nd~g~~iD~~li~~~~~~~~~~~~~l~~Gc-Cc~l~i~~dl~~~l--~~l~~l~~~~~~d~iii 79 (178)
.+++++...+.+-|+.|.+.+- ..+....+. .++ +.+|. ...- .... .++..+ +...+|+-|+
T Consensus 105 ~la~~L~~~~~ltVvTNsl~ia--~~l~~~~~~----~vi-llGG~~~~~~------~~~~G~~a~~~l-~~~~~d~afi 170 (252)
T PRK10906 105 AVAHALLNHSNLRIVTNNLNVA--NTLMAKEDF----RII-LAGGELRSRD------GGIIGEATLDFI-SQFRLDFGIL 170 (252)
T ss_pred HHHHHhcCCCCcEEEECcHHHH--HHHhhCCCC----EEE-EECCEEecCC------CccCCHHHHHHH-HhccCCEEEE
Confidence 5677776556799999986521 122222232 444 43444 3321 1112 233333 4779999999
Q ss_pred eCCcchhh---hcccc----------cccceEEEEEeCCCCCCCCcCCCCCCCceeEEEEec
Q 030407 80 ESGGDNLA---ANFSR----------ELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINK 128 (178)
Q Consensus 80 EttG~~~~---~~~~~----------~~ad~~I~VvD~~~~~~~~~~~~~qi~~adiiviNK 128 (178)
-+.|+... ..+.+ ..++-.+++.|.+............+..-|.++-++
T Consensus 171 ~~~Gi~~~~G~t~~~~~ea~~k~~~~~~a~~~illaD~sKf~~~~~~~~~~l~~id~iITD~ 232 (252)
T PRK10906 171 GISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGRNAMVNMGSISMVDAVYTDQ 232 (252)
T ss_pred cCCEECCCCCcCCCCHHHHHHHHHHHHhcCcEEEEEccchhCCcceeEecCHHHCCEEEECC
Confidence 99995321 11111 124678999998764332211112245567887774
No 395
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=54.49 E-value=39 Score=30.09 Aligned_cols=90 Identities=10% Similarity=0.007 Sum_probs=50.6
Q ss_pred hhCCCCEEEEeCCcchhhh--------cccc-cccceEEEEEeCCCCCCCCc----CCCCCCCceeEEEEecCCCCCchh
Q 030407 70 NLFKADLLLCESGGDNLAA--------NFSR-ELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIG 136 (178)
Q Consensus 70 ~~~~~d~iiiEttG~~~~~--------~~~~-~~ad~~I~VvD~~~~~~~~~----~~~~qi~~adiiviNK~Dl~~~~~ 136 (178)
...++|+++|.|.|.+... .+.. ....-.++|+|++.+..... .+.. . .-+-+++||.|-...
T Consensus 331 ~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~~-~-~~~g~IlTKlDet~~-- 406 (484)
T PRK06995 331 ELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYRG-P-GLAGCILTKLDEAAS-- 406 (484)
T ss_pred hccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhcc-C-CCCEEEEeCCCCccc--
Confidence 3447899999999943211 1110 00133788999876432211 1211 1 135788999997644
Q ss_pred HhHHHHHHHHHhcCCCCCEEEEecccCCCH-HHH
Q 030407 137 ADLAVMERDALRMRDGGPFIFAQVGWVIGI-IFT 169 (178)
Q Consensus 137 ~~~~~~~~~l~~~np~a~i~~~SA~~g~gi-~el 169 (178)
...+...+.+. ..|+.+++ +|++| ++|
T Consensus 407 --~G~~l~i~~~~--~lPI~yvt--~GQ~VPeDL 434 (484)
T PRK06995 407 --LGGALDVVIRY--KLPLHYVS--NGQRVPEDL 434 (484)
T ss_pred --chHHHHHHHHH--CCCeEEEe--cCCCChhhh
Confidence 34445444443 45777776 57888 444
No 396
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=54.37 E-value=27 Score=30.64 Aligned_cols=50 Identities=10% Similarity=-0.089 Sum_probs=34.0
Q ss_pred eeEEEEecCCCCCchh------HhHHHHHHHHHhc--C--CCCCEEEEecccCCCHHHHH
Q 030407 121 ADLLVINKTDLASAIG------ADLAVMERDALRM--R--DGGPFIFAQVGWVIGIIFTL 170 (178)
Q Consensus 121 adiiviNK~Dl~~~~~------~~~~~~~~~l~~~--n--p~a~i~~~SA~~g~gi~el~ 170 (178)
.-++++||.|-.+-.+ +-.+++..+++.+ | |...++++|..+|.++.+..
T Consensus 219 ~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 219 HLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred eEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 4699999999764311 2234455556532 3 45688999999999998765
No 397
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=54.35 E-value=56 Score=21.90 Aligned_cols=55 Identities=22% Similarity=0.290 Sum_probs=35.9
Q ss_pred CCCCCCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 114 GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 114 ~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
++..+..||+||+- +|-++. .....+.+..++. +.|++++. +.|+..+.+.|.++
T Consensus 42 l~~~i~~aD~VIv~-t~~vsH--~~~~~vk~~akk~--~ip~~~~~---~~~~~~l~~~l~~~ 96 (97)
T PF10087_consen 42 LPSKIKKADLVIVF-TDYVSH--NAMWKVKKAAKKY--GIPIIYSR---SRGVSSLERALERL 96 (97)
T ss_pred HHHhcCCCCEEEEE-eCCcCh--HHHHHHHHHHHHc--CCcEEEEC---CCCHHHHHHHHHhh
Confidence 34456667766655 456666 5666777777765 34777764 57788888777665
No 398
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=53.28 E-value=43 Score=29.57 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=24.3
Q ss_pred CHHHHHHhhcC-CcEEEEEecCC-C-----chhHHHHHHcCC
Q 030407 1 MLALCKFLRDK-YSLAAVTNDIF-T-----KEDGEFLMRNGA 35 (178)
Q Consensus 1 ~~~~~~~~~~~-~~vaVI~nd~g-~-----~iD~~li~~~~~ 35 (178)
+++++.+|+++ +|||+|.-+=- . +-|..+....|.
T Consensus 18 iekLI~~L~~rG~rVavIKH~hH~fd~D~~GKDS~r~r~AGA 59 (452)
T PRK14495 18 VERLVAAIAARGFSVSTVKHSHHDVDPDPPGSDSHRHRAAGA 59 (452)
T ss_pred HHHHHHHHHhCCCeEEEEeccCcccCCCCCCCCchhHHhCCC
Confidence 46889999764 99999996522 2 345666666665
No 399
>PTZ00258 GTP-binding protein; Provisional
Probab=53.10 E-value=31 Score=29.85 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=28.8
Q ss_pred ceeEEEEecC--CCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCC
Q 030407 120 QADLLVINKT--DLASAIGADLAVMERDALRMRDGGPFIFAQVGWVI 164 (178)
Q Consensus 120 ~adiiviNK~--Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~ 164 (178)
.+-++|+||. |+.....+.++.+.+.+.... ..+++++||+-..
T Consensus 221 KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~-~~~~v~~sa~~E~ 266 (390)
T PTZ00258 221 KPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKG-GGPIIPYSAEFEE 266 (390)
T ss_pred CCEEEEEECchhhhcccchHHHHHHHHHHHhcC-CCeEEEeeHHHHH
Confidence 4679999999 873221144566666555422 4689999987654
No 400
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=52.85 E-value=14 Score=30.45 Aligned_cols=47 Identities=17% Similarity=0.015 Sum_probs=36.0
Q ss_pred CCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHH
Q 030407 118 ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 173 (178)
Q Consensus 118 i~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l 173 (178)
+-.+.+.++||+|-.+- ++++-+. .+| .-.++||.++=+++++++.+
T Consensus 230 ~yVp~iyvLNkIdsISi--EELdii~-----~ip--havpISA~~~wn~d~lL~~m 276 (358)
T KOG1487|consen 230 IYVPCIYVLNKIDSISI--EELDIIY-----TIP--HAVPISAHTGWNFDKLLEKM 276 (358)
T ss_pred eeeeeeeeecccceeee--eccceee-----ecc--ceeecccccccchHHHHHHH
Confidence 44567999999999877 6655432 245 55899999999999998764
No 401
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=51.63 E-value=40 Score=29.43 Aligned_cols=87 Identities=13% Similarity=0.059 Sum_probs=50.3
Q ss_pred hCCCCEEEEeCCcchhh--------hcccc-cccceEEEEEeCCCCCCCCc----CCCCCCCceeEEEEecCCCCCchhH
Q 030407 71 LFKADLLLCESGGDNLA--------ANFSR-ELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGA 137 (178)
Q Consensus 71 ~~~~d~iiiEttG~~~~--------~~~~~-~~ad~~I~VvD~~~~~~~~~----~~~~qi~~adiiviNK~Dl~~~~~~ 137 (178)
..++|+++|.|.|.... ..+.. ....-.++|+|++....... .+. .-..+-++++|.|-...
T Consensus 267 l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~--~~~~~~~I~TKlDEt~~--- 341 (420)
T PRK14721 267 LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQ--GHGIHGCIITKVDEAAS--- 341 (420)
T ss_pred hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhc--CCCCCEEEEEeeeCCCC---
Confidence 34789999999995321 11111 11245788999986432211 111 12347899999998654
Q ss_pred hHHHHHHHHHhcCCCCCEEEEecccCCCHH
Q 030407 138 DLAVMERDALRMRDGGPFIFAQVGWVIGII 167 (178)
Q Consensus 138 ~~~~~~~~l~~~np~a~i~~~SA~~g~gi~ 167 (178)
...+...+.+. ..|+.+++ +|+++.
T Consensus 342 -~G~~l~~~~~~--~lPi~yvt--~Gq~VP 366 (420)
T PRK14721 342 -LGIALDAVIRR--KLVLHYVT--NGQKVP 366 (420)
T ss_pred -ccHHHHHHHHh--CCCEEEEE--CCCCch
Confidence 33444444433 34777766 577773
No 402
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=48.42 E-value=44 Score=28.52 Aligned_cols=82 Identities=12% Similarity=0.105 Sum_probs=46.4
Q ss_pred ccceEEEEEeCCCCCCCCcCC---C---------------CC-CCceeEEEEecCCCCCc--------------h-----
Q 030407 94 LADYIIYIIDVSGGDKIPRKG---G---------------PG-ITQADLLVINKTDLASA--------------I----- 135 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~~~---~---------------~q-i~~adiiviNK~Dl~~~--------------~----- 135 (178)
.+++++++++.++.+.....- . +. ...+-++.+||.||-.+ .
T Consensus 218 ~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~ 297 (354)
T KOG0082|consen 218 DVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTY 297 (354)
T ss_pred CCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCCh
Confidence 357899999988765432110 0 11 23567999999999422 0
Q ss_pred hHhHHHHHHHHHhcC----CCCCEEEEecccCCCHHHHHHHHhh
Q 030407 136 GADLAVMERDALRMR----DGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 136 ~~~~~~~~~~l~~~n----p~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
.+....++...+++| +..-...|.|..-..|+.+|+.+..
T Consensus 298 ~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d 341 (354)
T KOG0082|consen 298 EEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTD 341 (354)
T ss_pred HHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHH
Confidence 011112222233333 2234556788888888888886544
No 403
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=46.26 E-value=35 Score=29.32 Aligned_cols=46 Identities=11% Similarity=0.050 Sum_probs=29.8
Q ss_pred CceeEEEEecCCCCCch-hHhHHHHHHHHHhcCCCCCEEEEecccCCCH
Q 030407 119 TQADLLVINKTDLASAI-GADLAVMERDALRMRDGGPFIFAQVGWVIGI 166 (178)
Q Consensus 119 ~~adiiviNK~Dl~~~~-~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi 166 (178)
..+-+++.||.|...+. .+-+++++++.+.. +++++++||+-..-+
T Consensus 206 ~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~~--~~~vV~~sA~~E~eL 252 (372)
T COG0012 206 AKPMLYVANVSEDDLANLNEYVKRLKELAAKE--NAEVVPVSAAIELEL 252 (372)
T ss_pred cCCeEEEEECCcccccchhHHHHHHHHHhhhc--CCcEEEeeHHHHHHH
Confidence 35789999999987651 11255555555443 368999999754433
No 404
>PRK10037 cell division protein; Provisional
Probab=44.99 E-value=76 Score=25.04 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=31.0
Q ss_pred CCCCEEEEeCCcchhh---hcccccccceEEEEEeCCCCCCCCcCCCCCCCceeEEEEecCCC
Q 030407 72 FKADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDL 131 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~---~~~~~~~ad~~I~VvD~~~~~~~~~~~~~qi~~adiiviNK~Dl 131 (178)
.++|+|||.|.+. +. ..+. ..+|.+++++.+...... ..........-.+++|+++.
T Consensus 116 ~~yD~iiIDtpp~-~~~~~~~al-~aaD~vlvpv~~~~~~~i-~~~~~~~~~~~~i~~n~~~~ 175 (250)
T PRK10037 116 GRYQWILLDLPRG-ASPLTRQLL-SLCDHSLAIVNVDANCHI-RLHQQALPAGAHILINDLRI 175 (250)
T ss_pred CCCCEEEEECCCC-ccHHHHHHH-HhCCEEEEEcCcCHHHHH-hhhccccCCCeEEEEecCCc
Confidence 5799999999983 21 1111 236889998877432111 11111111112467899873
No 405
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=44.29 E-value=20 Score=32.15 Aligned_cols=27 Identities=15% Similarity=0.025 Sum_probs=22.9
Q ss_pred CCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 151 DGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 151 p~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
...|++..||+++.|++.|++.+...+
T Consensus 248 ~~~PV~~GSA~~n~Gv~~LLd~i~~~~ 274 (527)
T TIGR00503 248 EMTPVFFGTALGNFGVDHFLDGLLQWA 274 (527)
T ss_pred CeeEEEEeecccCccHHHHHHHHHHHC
Confidence 346999999999999999999886653
No 406
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=44.24 E-value=1.3e+02 Score=24.32 Aligned_cols=111 Identities=15% Similarity=0.240 Sum_probs=57.0
Q ss_pred HHHHHhhcCCcEEEEEecCCCchhHHHHHHcCCCCccceeecccCC-CcccccccccccCH--hHHHhhHhhCCCCEEEE
Q 030407 3 ALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINL--GPLEELSNLFKADLLLC 79 (178)
Q Consensus 3 ~~~~~~~~~~~vaVI~nd~g~~iD~~li~~~~~~~~~~~~~l~~Gc-Cc~l~i~~dl~~~l--~~l~~l~~~~~~d~iii 79 (178)
.+++++....++-||.|.+.+- ..+....++ +++ +.+|. ...- .... .++. .+++..+|.-|+
T Consensus 120 ~la~~L~~~~~ltVvTnsl~ia--~~l~~~~~~----~v~-llGG~~~~~~------~~~~G~~a~~-~l~~~~~d~afi 185 (269)
T PRK09802 120 EIARLMRKHTDVIAMTNGMNVA--NALLEAEGV----ELL-MTGGHLRRQS------QSFYGDQAEQ-SLQNYHFDMLFL 185 (269)
T ss_pred HHHHhcCcCCCeEEEeCCHHHH--HHHHhCCCC----EEE-EECCEEecCC------CceECHHHHH-HHHhccCCEEEE
Confidence 5677776556799999986521 122222233 443 33444 2210 1111 2333 334779999999
Q ss_pred eCCcchhh---hcccc----------cccceEEEEEeCCCCCCCCcCCCCCCCceeEEEEe
Q 030407 80 ESGGDNLA---ANFSR----------ELADYIIYIIDVSGGDKIPRKGGPGITQADLLVIN 127 (178)
Q Consensus 80 EttG~~~~---~~~~~----------~~ad~~I~VvD~~~~~~~~~~~~~qi~~adiiviN 127 (178)
-+.|+... ..+.. ..+.-.++++|.+............+..-|.|+-+
T Consensus 186 g~~gi~~~~G~t~~~~~ea~~kr~~i~~s~~~ill~D~sKf~~~~~~~~~~l~~id~iITD 246 (269)
T PRK09802 186 GVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVD 246 (269)
T ss_pred cCceecCCCCcCCCCHHHHHHHHHHHHHcCcEEEEEeccccCCcceEEecCHHHCCEEEEC
Confidence 99996321 11111 12466899999876433221111123444566554
No 407
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=41.26 E-value=50 Score=29.18 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=37.1
Q ss_pred CCEEEEeCCcchhhhcccc----cccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCc
Q 030407 74 ADLLLCESGGDNLAANFSR----ELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 134 (178)
Q Consensus 74 ~d~iiiEttG~~~~~~~~~----~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~ 134 (178)
..+=+|.|.| .+.-.... ...|+.|.|+|++.|.+.+.. ....+..+-+-.+||.|...+
T Consensus 102 ~rinlidtpg-hvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 102 HRINLIDTPG-HVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred ceEeeecCCC-cceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhh
Confidence 4456888888 22111110 124999999999988654321 112355667889999998654
No 408
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=40.99 E-value=46 Score=25.24 Aligned_cols=61 Identities=20% Similarity=0.130 Sum_probs=34.2
Q ss_pred CCCCEEEEeCCcchhh--hcccccccceEEEEEeCCCCCCCCc-CCCCCCCc----eeEEEEecCCCC
Q 030407 72 FKADLLLCESGGDNLA--ANFSRELADYIIYIIDVSGGDKIPR-KGGPGITQ----ADLLVINKTDLA 132 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~--~~~~~~~ad~~I~VvD~~~~~~~~~-~~~~qi~~----adiiviNK~Dl~ 132 (178)
..+|+|||++...... .......+|.+++|+++........ ...++++. -.-+|+||.|..
T Consensus 126 ~~yD~ViiD~pp~~~~~~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 126 KYFDYIIIDTPPIGTVTDAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred hcCCEEEEeCCCccccchHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 4799999999873211 1111124699999999864321110 11111111 236889999964
No 409
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=40.45 E-value=48 Score=24.50 Aligned_cols=61 Identities=20% Similarity=0.191 Sum_probs=35.2
Q ss_pred CCCCEEEEeCCcchhhhccc--ccccceEEEEEeCCCCCCCCc--CCCCC---CC---ceeEEEEecCCCCCc
Q 030407 72 FKADLLLCESGGDNLAANFS--RELADYIIYIIDVSGGDKIPR--KGGPG---IT---QADLLVINKTDLASA 134 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~~~~~--~~~ad~~I~VvD~~~~~~~~~--~~~~q---i~---~adiiviNK~Dl~~~ 134 (178)
..+|+|||++.+ .+..... ...+|.+|.++++.... ... .+... +. .--.+|+||++.-++
T Consensus 93 ~~yD~iiiD~~~-~~~~~~~~~l~~ad~viv~~~~~~~~-i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~~ 163 (195)
T PF01656_consen 93 SDYDYIIIDTPP-GLSDPVRNALAAADYVIVPIEPDPSS-IEGAERLIELLKRLGKKLKIIGVVINRVDPGNE 163 (195)
T ss_dssp TTSSEEEEEECS-SSSHHHHHHHHTSSEEEEEEESSHHH-HHHHHHHHHHHHHHTHTEEEEEEEEEEETSCCH
T ss_pred ccccceeecccc-cccHHHHHHHHhCceeeeecCCcHHH-HHHHHHHHHHHHHhccccceEEEEEeeeCCCcc
Confidence 349999999988 3322211 12468999999875421 000 00000 11 134789999998654
No 410
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=40.43 E-value=55 Score=26.38 Aligned_cols=102 Identities=14% Similarity=0.088 Sum_probs=50.5
Q ss_pred hHHHhhHhhCCCCEEEEeCCcc-hhhhcccccccceEEEEEeCCCCCCCCcCCCCCCCceeEEEEecCCCCCchhHhHHH
Q 030407 63 GPLEELSNLFKADLLLCESGGD-NLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAV 141 (178)
Q Consensus 63 ~~l~~l~~~~~~d~iiiEttG~-~~~~~~~~~~ad~~I~VvD~~~~~~~~~~~~~qi~~adiiviNK~Dl~~~~~~~~~~ 141 (178)
+.+..+....++|+|++.+.=- +.........+|.+++|+-+... .........+.....+|+|+.|-.+. -+. .
T Consensus 107 ~~l~~l~~~~~~~~iliD~P~g~~~~~~~al~~aD~vL~V~~~Da~-s~~~L~q~~l~~~~~~liNq~~~~s~--l~~-D 182 (243)
T PF06564_consen 107 RALAALKALGPYDWILIDTPPGPSPYTRQALAAADLVLVVVNPDAA-SHARLHQRALPAGHRFLINQYDPASQ--LQR-D 182 (243)
T ss_pred HHHHHHhccCCCCEEEEeCCCCCcHHHHHHHHhCCeEEEEeCCCHH-HHHHHHHhcccCCcEEEEeccCccch--HHH-H
Confidence 3344443245789999998751 11111111246888888865321 00000111133356999999998776 332 2
Q ss_pred HHHHHHhcCCCCCEEEEecccCCCHHHHH
Q 030407 142 MERDALRMRDGGPFIFAQVGWVIGIIFTL 170 (178)
Q Consensus 142 ~~~~l~~~np~a~i~~~SA~~g~gi~el~ 170 (178)
+...+++..+ +.++..-...+.+.|-+
T Consensus 183 ~~~~~~~~l~--~llp~~IHrDeAv~EAl 209 (243)
T PF06564_consen 183 LLQVWRQSLG--RLLPGVIHRDEAVAEAL 209 (243)
T ss_pred HHHHHHHhhc--cccceeeecchHHHHHH
Confidence 3333333322 23444444455555543
No 411
>PRK00007 elongation factor G; Reviewed
Probab=39.92 E-value=38 Score=31.39 Aligned_cols=27 Identities=11% Similarity=-0.076 Sum_probs=22.6
Q ss_pred CCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 150 RDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 150 np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
++..|++..||+++.|++.|++.+...
T Consensus 252 ~~~~Pv~~gSa~~~~Gv~~LLd~I~~~ 278 (693)
T PRK00007 252 NEIVPVLCGSAFKNKGVQPLLDAVVDY 278 (693)
T ss_pred CcEEEEEecccccCcCHHHHHHHHHHH
Confidence 355688999999999999999987654
No 412
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=38.18 E-value=35 Score=24.40 Aligned_cols=58 Identities=16% Similarity=0.123 Sum_probs=31.9
Q ss_pred CCEEEEeCCcchhhhcc--cccccceEEEEEeCCCCCCC-----CcCC-CCCCCceeEEEEecCCCC
Q 030407 74 ADLLLCESGGDNLAANF--SRELADYIIYIIDVSGGDKI-----PRKG-GPGITQADLLVINKTDLA 132 (178)
Q Consensus 74 ~d~iiiEttG~~~~~~~--~~~~ad~~I~VvD~~~~~~~-----~~~~-~~qi~~adiiviNK~Dl~ 132 (178)
+|+|+|.+.+ .+.... ....+|.++++++++...-. .... ...-...-.+|+||++-.
T Consensus 45 yd~VIiD~p~-~~~~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 45 YDYIIIDTGA-GISDNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred CCEEEEECCC-CCCHHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 9999999988 222111 11236889999988643210 0000 011111236899999853
No 413
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=37.84 E-value=49 Score=24.15 Aligned_cols=12 Identities=42% Similarity=0.612 Sum_probs=11.0
Q ss_pred CCCCEEEEeCCc
Q 030407 72 FKADLLLCESGG 83 (178)
Q Consensus 72 ~~~d~iiiEttG 83 (178)
.++|+++||+.|
T Consensus 98 ~~~D~viid~~g 109 (166)
T TIGR00347 98 QKYDFVLVEGAG 109 (166)
T ss_pred hcCCEEEEEcCC
Confidence 479999999998
No 414
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=37.44 E-value=24 Score=31.74 Aligned_cols=77 Identities=10% Similarity=-0.060 Sum_probs=43.1
Q ss_pred eEEEEEeCCCCCCCC-cCCCCCCCce-eEEEEecCCCCCchhHhHHHHHHHHHh--------------cCCC---CCEEE
Q 030407 97 YIIYIIDVSGGDKIP-RKGGPGITQA-DLLVINKTDLASAIGADLAVMERDALR--------------MRDG---GPFIF 157 (178)
Q Consensus 97 ~~I~VvD~~~~~~~~-~~~~~qi~~a-diiviNK~Dl~~~~~~~~~~~~~~l~~--------------~np~---a~i~~ 157 (178)
....|+|........ ......+... -++.+||.|+.+. ...--+-++++. .||. ..+..
T Consensus 113 ~~~~vvd~~d~p~~i~p~~~~~v~~~~~~v~~n~vdl~p~--d~~~~~c~rc~~l~~~~~vk~~~~en~~p~~~f~~~~~ 190 (572)
T KOG1249|consen 113 LARKVVDLSDEPCSIDPLLTNDVGSPRLFVDGNKVDLLPK--DSRPGYCQRCHSLLHYGMIKAGGGENLNPDFDFDHVDL 190 (572)
T ss_pred ceEEeeecccCccccccchhhcccCCceEeeccccccccc--cccchHHHHHHhhcccceeecccccCCCcccchhhhhh
Confidence 356677765433211 1111112222 4899999999876 332222222222 1232 24567
Q ss_pred EecccCCCHHHHHHHHhh
Q 030407 158 AQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 158 ~SA~~g~gi~el~~~l~~ 175 (178)
+|+++|.|+++|+-.|..
T Consensus 191 ~r~ktgyg~eeLI~~lvd 208 (572)
T KOG1249|consen 191 IRAKTGYGIEELIVMLVD 208 (572)
T ss_pred hhhhhcccHHHHHHHhhh
Confidence 899999999999877654
No 415
>PF07846 Metallothio_Cad: Metallothionein family; InterPro: IPR012484 The sequence making up family 7 of the metallothionein superfamily are found repeated in metallothionein proteins expressed by two Tetrahymena species. Metallothioneins are low molecular mass, cysteine-rich metal-binding proteins that are thought to be involved in the regulation of levels of trace metals, and detoxification of these metals when present in excess []. Some of the metallothioneins found in this family (for example, Q8T6B3 from SWISSPROT) are known to be induced by cadmium and are thought to be involved in the cellular sequestration of toxic metal ions. The high proportion of cysteine residues allows the metal ions to be bound by the formation of clusters of metal-thiolate complexes []. Tetrahymena spp. metallothioneins differ from other eukaryotic metallothioneins mainly in the length of their sequences and in the cysteine-containing motifs they exhibit. ; GO: 0046870 cadmium ion binding
Probab=37.04 E-value=16 Score=17.71 Aligned_cols=6 Identities=33% Similarity=0.855 Sum_probs=3.9
Q ss_pred ccCCCc
Q 030407 45 ETGGCP 50 (178)
Q Consensus 45 ~~GcCc 50 (178)
++||||
T Consensus 15 nsG~~C 20 (21)
T PF07846_consen 15 NSGCCC 20 (21)
T ss_pred CCcccc
Confidence 467766
No 416
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=36.88 E-value=57 Score=26.41 Aligned_cols=18 Identities=22% Similarity=0.325 Sum_probs=15.8
Q ss_pred CCceeEEEEecCCCCCch
Q 030407 118 ITQADLLVINKTDLASAI 135 (178)
Q Consensus 118 i~~adiiviNK~Dl~~~~ 135 (178)
+..+.++|++|+|+++..
T Consensus 68 ~~~PVYvv~Tk~D~l~GF 85 (266)
T PF14331_consen 68 VRLPVYVVFTKCDLLPGF 85 (266)
T ss_pred CCCCeEeeeECCCcccCH
Confidence 578899999999999874
No 417
>COG3596 Predicted GTPase [General function prediction only]
Probab=36.88 E-value=1.7e+02 Score=24.36 Aligned_cols=103 Identities=15% Similarity=0.108 Sum_probs=61.7
Q ss_pred CCEEEEeCCcchhh--------hccc--ccccceEEEEEeCCCCCCCCc-CC-----CCCCCceeEEEEecCCCCCch--
Q 030407 74 ADLLLCESGGDNLA--------ANFS--RELADYIIYIIDVSGGDKIPR-KG-----GPGITQADLLVINKTDLASAI-- 135 (178)
Q Consensus 74 ~d~iiiEttG~~~~--------~~~~--~~~ad~~I~VvD~~~~~~~~~-~~-----~~qi~~adiiviNK~Dl~~~~-- 135 (178)
=-.++..|.|..-. ..+. ....|.+++++|+.+..-.-+ .+ ..+....-++++|-+|.+.+-
T Consensus 87 ~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~ 166 (296)
T COG3596 87 ENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGRE 166 (296)
T ss_pred cceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccc
Confidence 35778899995321 1111 113588899999876532211 11 123445679999999986541
Q ss_pred ---------hHhHHHHHHHHH----hcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 136 ---------GADLAVMERDAL----RMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 136 ---------~~~~~~~~~~l~----~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
++..+.++++.. ..+|--||+..|+..+-|++++...+-+.
T Consensus 167 W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~ 220 (296)
T COG3596 167 WDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITA 220 (296)
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHh
Confidence 122222222221 22455689999999999999999887654
No 418
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=34.10 E-value=54 Score=26.96 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=21.4
Q ss_pred CCCCEEEEeCCcch----hhhcccccccceEEEEEeCC
Q 030407 72 FKADLLLCESGGDN----LAANFSRELADYIIYIIDVS 105 (178)
Q Consensus 72 ~~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~ 105 (178)
.+||+|||.+.|.. ...+.....+|.+++++.++
T Consensus 121 ~~yD~IliD~~~~~~~~g~~~~~a~~~Ad~viVvt~~e 158 (296)
T TIGR02016 121 WDFDFVLMDFLGDVVCGGFATPLARSLAEEVIVIGSND 158 (296)
T ss_pred ccCCEEEEecCCCccccccccchhhhhCCeEEEEecch
Confidence 37999999998831 11122222468888888764
No 419
>CHL00175 minD septum-site determining protein; Validated
Probab=33.19 E-value=52 Score=26.38 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=21.6
Q ss_pred CCCEEEEeCCcchhhhccc--ccccceEEEEEeCCC
Q 030407 73 KADLLLCESGGDNLAANFS--RELADYIIYIIDVSG 106 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~~~~--~~~ad~~I~VvD~~~ 106 (178)
.||+|||+|.+. +..... ...+|.+++|++++.
T Consensus 126 ~yD~VIiDtpp~-~~~~~~~~l~~aD~viiV~~p~~ 160 (281)
T CHL00175 126 GYDYILIDCPAG-IDVGFINAIAPAQEAIVVTTPEI 160 (281)
T ss_pred CCCEEEEeCCCC-CCHHHHHHHHhcCeeEEEcCCCh
Confidence 799999999883 221111 123688888887754
No 420
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=30.01 E-value=52 Score=28.51 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=14.9
Q ss_pred HHHHhhcCCcEEEEEecCC
Q 030407 4 LCKFLRDKYSLAAVTNDIF 22 (178)
Q Consensus 4 ~~~~~~~~~~vaVI~nd~g 22 (178)
+.+..++++++|++++|+|
T Consensus 290 L~~F~~~k~hialVVDEYG 308 (423)
T COG4536 290 LVAFQRNKKHIALVVDEYG 308 (423)
T ss_pred HHHHHHhcceEEEEEeccC
Confidence 4444555699999999999
No 421
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=29.97 E-value=1.3e+02 Score=24.42 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=14.3
Q ss_pred HHHHHhh-c-C-CcEEEEEecCC
Q 030407 3 ALCKFLR-D-K-YSLAAVTNDIF 22 (178)
Q Consensus 3 ~~~~~~~-~-~-~~vaVI~nd~g 22 (178)
+++.++. + + ++|++|..|..
T Consensus 213 kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 213 KLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred HHHHHHHHHcCCCeEEEEECCcc
Confidence 4555554 3 4 89999999976
No 422
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=29.60 E-value=1.1e+02 Score=23.40 Aligned_cols=40 Identities=10% Similarity=0.242 Sum_probs=22.1
Q ss_pred HhhHhhCCCCEEEEeCCcchhh---hcccccccceEEEEEeCCC
Q 030407 66 EELSNLFKADLLLCESGGDNLA---ANFSRELADYIIYIIDVSG 106 (178)
Q Consensus 66 ~~l~~~~~~d~iiiEttG~~~~---~~~~~~~ad~~I~VvD~~~ 106 (178)
..+.+.+++|+|+|.+....-. ..+ ...+|.+|.|+.+..
T Consensus 141 ~~l~~~y~~D~IiiD~pp~~~~~~~~~l-~~~aD~viiV~~~~~ 183 (207)
T TIGR03018 141 HELARRYPDRIIIIDTPPLLVFSEARAL-ARLVGQIVLVVEEGR 183 (207)
T ss_pred HHHHhhCCCCEEEEECCCCcchhHHHHH-HHhCCEEEEEEECCC
Confidence 3343333459999998762111 111 124688888887643
No 423
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=29.26 E-value=7.5 Score=26.44 Aligned_cols=64 Identities=16% Similarity=-0.002 Sum_probs=31.5
Q ss_pred ccceEEEEEeCCCCCCCCcCCCC------CCCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHH
Q 030407 94 LADYIIYIIDVSGGDKIPRKGGP------GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 167 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~~~~~------qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~ 167 (178)
..+.++.+.+..........+.+ ....+.+++.||.|+... . +...+.. .+++.+|+++|+|+.
T Consensus 46 s~~~~~~v~~~~~~~s~~~~~~~~i~~~~k~dl~~~~~~nk~dl~~~--~--~~~~~~~------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 46 SFDVVLQCWRVDDRDSADNKNVPEVLVGNKSDLPILVGGNRDVLEEE--R--QVATEEG------LEFAETSAKTPEEGE 115 (124)
T ss_pred CCCEEEEEEEccCHHHHHHHhHHHHHhcCCCCCcEEEEeechhhHhh--C--cCCHHHH------HHHHHHhCCCcchhh
Confidence 34667666766543321110100 112334667789987332 1 1111111 134567899999885
No 424
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=28.58 E-value=99 Score=24.77 Aligned_cols=92 Identities=11% Similarity=0.079 Sum_probs=46.4
Q ss_pred CCCCEEEEeCCcc-hhhhcccccccceEEEEEeCCCCCCCC------------cCCCCCCCceeEEEEecCCCCCchhHh
Q 030407 72 FKADLLLCESGGD-NLAANFSRELADYIIYIIDVSGGDKIP------------RKGGPGITQADLLVINKTDLASAIGAD 138 (178)
Q Consensus 72 ~~~d~iiiEttG~-~~~~~~~~~~ad~~I~VvD~~~~~~~~------------~~~~~qi~~adiiviNK~Dl~~~~~~~ 138 (178)
.+||++||.+-|. +....+....+|.+++=.-++..+-.. ....+.+ +--|+.|++.-... ..
T Consensus 82 ~~~d~VlvDleG~as~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~i--p~~Vl~Tr~~~~~~--~~ 157 (231)
T PF07015_consen 82 SGFDFVLVDLEGGASELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDI--PAAVLFTRVPAARL--TR 157 (231)
T ss_pred cCCCEEEEeCCCCCchhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCC--CeeEEEecCCcchh--hH
Confidence 4699999999983 111122222357666544333221100 0112223 44799999874322 12
Q ss_pred HHHH-HHHHHhcCCCCCEEEEecccCCCHHHHHH
Q 030407 139 LAVM-ERDALRMRDGGPFIFAQVGWVIGIIFTLS 171 (178)
Q Consensus 139 ~~~~-~~~l~~~np~a~i~~~SA~~g~gi~el~~ 171 (178)
..+. .+.++ ..|++.++-.......+++.
T Consensus 158 ~~~~~~e~~~----~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 158 AQRIISEQLE----SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHHHHh----cCCccccccccHHHHHHHHH
Confidence 2222 23333 35788877666665555554
No 425
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.53 E-value=21 Score=27.97 Aligned_cols=77 Identities=12% Similarity=-0.093 Sum_probs=45.5
Q ss_pred cceEEEEEeCCCCCCCC---cCCCC---CCC-ceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHH
Q 030407 95 ADYIIYIIDVSGGDKIP---RKGGP---GIT-QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 167 (178)
Q Consensus 95 ad~~I~VvD~~~~~~~~---~~~~~---qi~-~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~ 167 (178)
....|+++|++...... ..+.. ..+ .+-++..||.|.-.. ....+-....+. ...+.+.+||+..-+.+
T Consensus 83 ~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r--~~k~k~v~~~rk--knl~y~~iSaksn~Nfe 158 (216)
T KOG0096|consen 83 GQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKAR--KVKAKPVSFHRK--KNLQYYEISAKSNYNFE 158 (216)
T ss_pred cceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceecccc--ccccccceeeec--ccceeEEeecccccccc
Confidence 35678888987543221 11110 111 356889999998655 211122222222 34689999999998888
Q ss_pred HHHHHHhh
Q 030407 168 FTLSITHY 175 (178)
Q Consensus 168 el~~~l~~ 175 (178)
.-|-++.+
T Consensus 159 kPFl~Lar 166 (216)
T KOG0096|consen 159 RPFLWLAR 166 (216)
T ss_pred cchHHHhh
Confidence 87776654
No 426
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=28.38 E-value=74 Score=28.28 Aligned_cols=52 Identities=19% Similarity=0.056 Sum_probs=32.5
Q ss_pred cceEEEEEeCCCCCCCCcC-C---CCCCCceeEEEEecCCCCCchhH-hHHHHHHHH
Q 030407 95 ADYIIYIIDVSGGDKIPRK-G---GPGITQADLLVINKTDLASAIGA-DLAVMERDA 146 (178)
Q Consensus 95 ad~~I~VvD~~~~~~~~~~-~---~~qi~~adiiviNK~Dl~~~~~~-~~~~~~~~l 146 (178)
+|..+.|+|+..|.+.+.. . .+.-..+-+-++||.|.....+- -+.++++.+
T Consensus 105 vDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L 161 (528)
T COG4108 105 VDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEEL 161 (528)
T ss_pred hheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHh
Confidence 5999999999887654321 1 11123466889999999876322 234444444
No 427
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=28.12 E-value=1.1e+02 Score=26.11 Aligned_cols=39 Identities=15% Similarity=0.091 Sum_probs=28.0
Q ss_pred ceeEEEEecCCC--C-CchhHhHHHHHHHHHhcCCCCCEEEEeccc
Q 030407 120 QADLLVINKTDL--A-SAIGADLAVMERDALRMRDGGPFIFAQVGW 162 (178)
Q Consensus 120 ~adiiviNK~Dl--~-~~~~~~~~~~~~~l~~~np~a~i~~~SA~~ 162 (178)
.+-++++|+.|. . +. ..++++.+++.+. +.+++++||+-
T Consensus 200 KP~i~v~N~~e~~~~~~~--~~~~~i~~~~~~~--~~~~i~~sa~~ 241 (364)
T PRK09601 200 KPVLYVANVDEDDLADGN--PYVKKVREIAAKE--GAEVVVICAKI 241 (364)
T ss_pred CCeEEEEECCcccccccc--HHHHHHHHHHHHc--CCeEEEEEHHH
Confidence 578999999995 2 22 4566777777653 56899999854
No 428
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=27.99 E-value=77 Score=24.55 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=33.0
Q ss_pred CCCCEEEEeCCcchhhh-c-ccccccceEEEEEeCCCCCCCC--c--CCCCCCCc-eeEEEEecCCCC
Q 030407 72 FKADLLLCESGGDNLAA-N-FSRELADYIIYIIDVSGGDKIP--R--KGGPGITQ-ADLLVINKTDLA 132 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~~-~-~~~~~ad~~I~VvD~~~~~~~~--~--~~~~qi~~-adiiviNK~Dl~ 132 (178)
.++|+|||++.+ .+.. + .....+|.+++++++....-.. . ........ --.+++||.+-.
T Consensus 107 ~~yD~VIiD~p~-~~~~~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 107 DDTDFLLIDAPA-GLERDAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTRD 173 (251)
T ss_pred hhCCEEEEeCCC-ccCHHHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCch
Confidence 479999999998 2221 1 1112468899999875432110 0 00001111 135899999863
No 429
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=27.87 E-value=78 Score=29.30 Aligned_cols=26 Identities=12% Similarity=-0.042 Sum_probs=21.9
Q ss_pred CCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 151 DGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 151 p~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...|++..||++|.|++.|++.|...
T Consensus 252 ~~~PV~~gSa~~~~Gv~~LLd~I~~~ 277 (689)
T TIGR00484 252 EFFPVLCGSAFKNKGVQLLLDAVVDY 277 (689)
T ss_pred CEEEEEeccccCCccHHHHHHHHHHH
Confidence 44588889999999999999988653
No 430
>KOG4584 consensus Uncharacterized conserved protein [General function prediction only]
Probab=27.56 E-value=2.5e+02 Score=23.68 Aligned_cols=28 Identities=21% Similarity=0.077 Sum_probs=18.4
Q ss_pred HHHHhhcC-CcEEEEEec-------CC-CchhHHHHH
Q 030407 4 LCKFLRDK-YSLAAVTND-------IF-TKEDGEFLM 31 (178)
Q Consensus 4 ~~~~~~~~-~~vaVI~nd-------~g-~~iD~~li~ 31 (178)
..+.++.+ +|.++|-+| +| .++=.+++.
T Consensus 190 f~~r~~~~p~K~~lif~DNSG~DvILGilPf~Rellr 226 (348)
T KOG4584|consen 190 FLARLKGKPHKCALIFVDNSGFDVILGILPFARELLR 226 (348)
T ss_pred HHHHhcCCCcceEEEEecCCCcceeeeecHHHHHHHh
Confidence 34445544 899999999 66 566555554
No 431
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=26.68 E-value=1.3e+02 Score=27.49 Aligned_cols=55 Identities=13% Similarity=-0.000 Sum_probs=40.3
Q ss_pred CCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEe--cccCCCHHHHHHHHhhh
Q 030407 118 ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQ--VGWVIGIIFTLSITHYI 176 (178)
Q Consensus 118 i~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~S--A~~g~gi~el~~~l~~~ 176 (178)
+..+.+|.+||..--++ ++++.++++.++.. ++...++ ++-|+|-.+|.+.+.+.
T Consensus 400 fg~pvVVaiN~F~~Dt~--~Ei~~l~~~~~~~g--~~~~v~~~wa~GGeGa~eLA~~Vv~a 456 (587)
T PRK13507 400 SGINPVVCINAFYTDTH--AEIAIVRRLAEQAG--ARVAVSRHWEKGGEGALELADAVIDA 456 (587)
T ss_pred cCCCeEEEeCCCCCCCH--HHHHHHHHHHHHcC--CCEEEechhhccchhHHHHHHHHHHH
Confidence 55678999999987666 89999999988653 3444433 35588888888766443
No 432
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=26.67 E-value=82 Score=24.85 Aligned_cols=35 Identities=17% Similarity=0.123 Sum_probs=22.4
Q ss_pred CCCCEEEEeCCcch----hhhcccccccceEEEEEeCCC
Q 030407 72 FKADLLLCESGGDN----LAANFSRELADYIIYIIDVSG 106 (178)
Q Consensus 72 ~~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~ 106 (178)
.++|||||.|.|.. +..+.....+|.+++++.+..
T Consensus 115 ~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~ 153 (270)
T cd02040 115 DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM 153 (270)
T ss_pred cCCCEEEEecccCcccCCcccccccccccEEEEEecCch
Confidence 47999999998721 111111124688998888754
No 433
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=26.62 E-value=87 Score=23.98 Aligned_cols=34 Identities=21% Similarity=0.154 Sum_probs=22.6
Q ss_pred CCCCEEEEeCCcchhh-----hcccccccceEEEEEeCCC
Q 030407 72 FKADLLLCESGGDNLA-----ANFSRELADYIIYIIDVSG 106 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~-----~~~~~~~ad~~I~VvD~~~ 106 (178)
.+||||+|.|.|. +. .+.....+|.+++++.++.
T Consensus 115 ~~yD~ilID~~g~-~~~~~~~~~l~~~~ad~vliv~~p~~ 153 (212)
T cd02117 115 DDLDVVLYDVLGD-VVCGGFAMPIREGKADEIYIVTSGEF 153 (212)
T ss_pred cCCCEEEEecCCC-ceecccccccccccCcEEEEEecccH
Confidence 4799999999872 21 1122124688999998754
No 434
>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]
Probab=25.79 E-value=69 Score=21.88 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=18.0
Q ss_pred ceeecccCC--CcccccccccccCH-hHHHhhHhhCCCCEE
Q 030407 40 RIRAVETGG--CPHAAIREDISINL-GPLEELSNLFKADLL 77 (178)
Q Consensus 40 ~~~~l~~Gc--Cc~l~i~~dl~~~l-~~l~~l~~~~~~d~i 77 (178)
-...+.++| |.+- ..+| ..+.+.++..-++.+
T Consensus 45 V~l~l~GaC~gC~sS------~~TLk~gIE~~L~~~i~ev~ 79 (93)
T COG0694 45 VYLRLGGACSGCPSS------TVTLKNGIERQLKEEIPEVK 79 (93)
T ss_pred EEEEeCCcCCCCccc------HHHHHHHHHHHHHHhCCccc
Confidence 456688888 5542 3445 556666655434443
No 435
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.06 E-value=1.5e+02 Score=26.14 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=31.9
Q ss_pred CCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHH
Q 030407 118 ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS 171 (178)
Q Consensus 118 i~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~ 171 (178)
.+.||++++|=|=-.+....+.-.....+++.+|.+.++.+-...-.- ++++.
T Consensus 38 ~~eADvviiNTC~V~~~a~~k~~~~i~~~~~~~p~~~iiVtGC~aq~~-~~i~~ 90 (437)
T COG0621 38 PEEADVVIINTCAVREKAEQKVRSAIGELKKLKPDAKIIVTGCLAQAE-EEILE 90 (437)
T ss_pred cccCCEEEEecCeeeehHHHHHHHHHHHHHHhCCCCEEEEeCCccccC-HHHHh
Confidence 345899999988876652112222233444567888888876655444 55544
No 436
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=24.80 E-value=73 Score=24.81 Aligned_cols=59 Identities=12% Similarity=0.037 Sum_probs=31.9
Q ss_pred CCCCEEEEeCCcchhhhccc--ccccceEEEEEeCCCCCCCCc----CCCCCCC-ceeEEEEecCCC
Q 030407 72 FKADLLLCESGGDNLAANFS--RELADYIIYIIDVSGGDKIPR----KGGPGIT-QADLLVINKTDL 131 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~~~~~--~~~ad~~I~VvD~~~~~~~~~----~~~~qi~-~adiiviNK~Dl 131 (178)
..+|+|||++.+ ++..... ...+|.+++++.+....-... ....... ..-.+++|+++-
T Consensus 110 ~~~D~viiD~p~-~~~~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~iviN~~~~ 175 (261)
T TIGR01968 110 EEFDYVIIDCPA-GIESGFRNAVAPADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNRLRP 175 (261)
T ss_pred HhCCEEEEeCCC-CcCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHHHcCCCceEEEEeCcCc
Confidence 369999999988 3221111 123688888888753211000 0000011 134688999985
No 437
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=24.46 E-value=3.7e+02 Score=21.48 Aligned_cols=94 Identities=23% Similarity=0.280 Sum_probs=50.4
Q ss_pred HHHHHHhhcCCcEEEEEecCCCchhHHHHHHcCCCCccceeecccCC-CcccccccccccCH-hHHHhhHhhCCCCEEEE
Q 030407 2 LALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINL-GPLEELSNLFKADLLLC 79 (178)
Q Consensus 2 ~~~~~~~~~~~~vaVI~nd~g~~iD~~li~~~~~~~~~~~~~l~~Gc-Cc~l~i~~dl~~~l-~~l~~l~~~~~~d~iii 79 (178)
..++++|.+..++-||.|.+.+- ..+..+.+. .+ -+.+|- .-.. .... ..-.+.++++.+|..|+
T Consensus 104 ~~la~~L~~~~~ltviTNsl~ia--~~l~~~~~~----~v-i~~GG~~~~~~------~~~~G~~a~~~l~~~~~d~aFi 170 (253)
T COG1349 104 LALARALPDDNNLTVITNSLNIA--AALLEKPNI----EV-ILLGGTVRKKS------GSFVGPLAEEFLRQFNFDKAFI 170 (253)
T ss_pred HHHHHHhCcCCCeEEEeCCHHHH--HHHHhCCCC----eE-EEeCcEEEcCC------CeEEcHHHHHHHHhCcccEEEE
Confidence 35677777656699999997621 123333222 33 222332 2211 1111 11233445789999999
Q ss_pred eCCcchhh---hcccc----------cccceEEEEEeCCCCC
Q 030407 80 ESGGDNLA---ANFSR----------ELADYIIYIIDVSGGD 108 (178)
Q Consensus 80 EttG~~~~---~~~~~----------~~ad~~I~VvD~~~~~ 108 (178)
=+.|+... .++.. ..+.-.+.++|.+...
T Consensus 171 g~~gi~~~~g~~~~~~~ea~~k~~~~~~a~~~~ll~D~sKf~ 212 (253)
T COG1349 171 GADGIDLEGGLTTFNEEEAEVKRAMIEAAREVILLADSSKFG 212 (253)
T ss_pred eccccCCCCCcCcCCHHHHHHHHHHHHhhCcEEEEEcCCccC
Confidence 99995421 11211 1246789999976543
No 438
>TIGR02845 spore_V_AD stage V sporulation protein AD. Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.
Probab=24.43 E-value=1.2e+02 Score=25.63 Aligned_cols=64 Identities=20% Similarity=0.154 Sum_probs=37.1
Q ss_pred EEEEecCC-Cc--hhHHHHHHcCCCC--------------ccceeecccCC-CcccccccccccCH-hHHHhhHhhCCCC
Q 030407 15 AAVTNDIF-TK--EDGEFLMRNGALP--------------EERIRAVETGG-CPHAAIREDISINL-GPLEELSNLFKAD 75 (178)
Q Consensus 15 aVI~nd~g-~~--iD~~li~~~~~~~--------------~~~~~~l~~Gc-Cc~l~i~~dl~~~l-~~l~~l~~~~~~d 75 (178)
.++..|+| ++ |=.+|+++.|+.. +.++..=.+|| |+.. .+ .-+...+++..+.
T Consensus 224 ~i~tgdlg~vg~~i~~~ll~~~g~~~~~~~~dcg~~iy~~~~~~~aggsgc~csa~--------v~~~~~~~~~~~g~~~ 295 (327)
T TIGR02845 224 LIVTGDLARVGSEILRKLLKERGYDVTERYDDCGVMIYRPDQQVFAGGSGCACSAV--------VTYGHILKEMLRGKLK 295 (327)
T ss_pred EEEecchHHHHHHHHHHHHHHcCCChhhccccCCeEEEcCCCcccCCCcccchhHH--------HHHHHHHHHHhcCcce
Confidence 57888888 64 4456676666521 12223333456 5421 22 3334444477899
Q ss_pred EEEEeCCcchhh
Q 030407 76 LLLCESGGDNLA 87 (178)
Q Consensus 76 ~iiiEttG~~~~ 87 (178)
.|++=+|| ++-
T Consensus 296 r~l~v~tg-all 306 (327)
T TIGR02845 296 KVLVVATG-ALL 306 (327)
T ss_pred EEEEEEch-hhc
Confidence 99999999 443
No 439
>PF01133 ER: Enhancer of rudimentary; InterPro: IPR000781 The Drosophila protein 'enhancer of rudimentary' (gene (e(r)) is a small protein of 104 residues whose function is not yet clear. From an evolutionary point of view, it is highly conserved [] and has been found to exist in probably all multicellular eukaryotic organisms. It has been proposed that this protein plays a role in the cell cycle.; GO: 0007049 cell cycle; PDB: 1W9G_A 2NML_A 1WWQ_A 1WZ7_B.
Probab=23.80 E-value=97 Score=21.58 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 139 LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 139 ~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
..-.++.+++.||..+-+. -+|.+||++|+.++
T Consensus 33 C~~YE~~LK~~nP~~~~It------YdIs~Lf~fID~l~ 65 (102)
T PF01133_consen 33 CKIYEEHLKRKNPNSPSIT------YDISDLFDFIDSLA 65 (102)
T ss_dssp HHHHHHHHHHHSTT-SS----------HHHHHHHHHHSS
T ss_pred HHHHHHHHHHcCCCCCccc------ccHHHHHHHHhhhh
Confidence 3457788889999755443 67999999998764
No 440
>COG3688 Predicted RNA-binding protein containing a PIN domain [General function prediction only]
Probab=23.79 E-value=3.3e+02 Score=20.71 Aligned_cols=62 Identities=10% Similarity=-0.053 Sum_probs=35.3
Q ss_pred ceEEEEEeCCCCCCCCcCCCCCCCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEeccc
Q 030407 96 DYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGW 162 (178)
Q Consensus 96 d~~I~VvD~~~~~~~~~~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~ 162 (178)
.-+++|+||..-.....++ ...-.-|+.+|.+-.-. .-+++....++...+.--++.||-.+
T Consensus 49 ~~iivVFDA~~v~g~~~~~---~~~~vsvvyT~~~ETAD--s~IEr~~~el~~~~t~~V~VaTSD~~ 110 (173)
T COG3688 49 YKIIVVFDAHYVPGVGREY---KNHRVSVVYTKEGETAD--SFIERYVAELRNAATHQVIVATSDRA 110 (173)
T ss_pred ceEEEEEEccccccccccc---cccceEEEEecCCccHH--HHHHHHHHHHhccccceEEEEeCchh
Confidence 5589999996544322222 22234688999997544 55566655555333333345566543
No 441
>PRK12404 stage V sporulation protein AD; Provisional
Probab=23.64 E-value=1.3e+02 Score=25.48 Aligned_cols=65 Identities=22% Similarity=0.234 Sum_probs=37.3
Q ss_pred EEEEecCC-Cc--hhHHHHHHcCCCC-c--------------cceeecccCC-CcccccccccccCH-hHHHhhHhhCCC
Q 030407 15 AAVTNDIF-TK--EDGEFLMRNGALP-E--------------ERIRAVETGG-CPHAAIREDISINL-GPLEELSNLFKA 74 (178)
Q Consensus 15 aVI~nd~g-~~--iD~~li~~~~~~~-~--------------~~~~~l~~Gc-Cc~l~i~~dl~~~l-~~l~~l~~~~~~ 74 (178)
.++..|+| ++ |=.+|+++.|+.. . .++..=.+|| |+.. .+ .-+...+++..+
T Consensus 228 lI~TGDLg~vG~~i~~~ll~~~g~~~~~~~~~DCG~~iyd~~~~~~aGgSGcgcsA~--------v~~g~~~~~~~~g~~ 299 (334)
T PRK12404 228 LIVTGDLGHVGREIAKDLLHKHGVKVPEEQFQDCGLLIYREGQPVIAGASGPGCSAT--------VTYGHLLNRMKRGEL 299 (334)
T ss_pred EEEEcchHHHHHHHHHHHHHHcCCCCCcccccccCeEEecCCCcccCCCcccchHHH--------HHHHHHHHHHhcCCc
Confidence 57888888 64 4456676666521 1 1222233456 4421 22 333344447789
Q ss_pred CEEEEeCCcchhhh
Q 030407 75 DLLLCESGGDNLAA 88 (178)
Q Consensus 75 d~iiiEttG~~~~~ 88 (178)
..|++=+|| ++-+
T Consensus 300 ~rvL~v~TG-ALlS 312 (334)
T PRK12404 300 KRILVVATG-ALLS 312 (334)
T ss_pred eEEEEEEch-hhcC
Confidence 999999999 4433
No 442
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=23.36 E-value=1.5e+02 Score=26.77 Aligned_cols=55 Identities=15% Similarity=0.037 Sum_probs=41.0
Q ss_pred CCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEe--cccCCCHHHHHHHHhhh
Q 030407 118 ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQ--VGWVIGIIFTLSITHYI 176 (178)
Q Consensus 118 i~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~S--A~~g~gi~el~~~l~~~ 176 (178)
+..+.+|.+||.---++ ++++.++++.++.. +++..++ ++-|+|-.+|.+.+.+.
T Consensus 355 fg~p~VVaiN~F~~Dt~--~Ei~~v~~~~~~~g--~~~~~~~~~~~GG~Ga~eLA~~Vi~a 411 (524)
T cd00477 355 FGVPVVVAINKFSTDTD--AELALVRKLAEEAG--AFVAVSEHWAEGGKGAVELAEAVIEA 411 (524)
T ss_pred cCCCeEEEecCCCCCCH--HHHHHHHHHHHHcC--CCEEEehhhhhhhhhHHHHHHHHHHH
Confidence 45678999999987666 89999999998764 4555443 45589988888765543
No 443
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=23.16 E-value=1.9e+02 Score=24.02 Aligned_cols=44 Identities=18% Similarity=0.130 Sum_probs=30.5
Q ss_pred eeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHH
Q 030407 121 ADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT 173 (178)
Q Consensus 121 adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l 173 (178)
..+.|-||+|.++- ++..++ .+ .|+ -+.+|..-+-+++.|++.+
T Consensus 240 ~ClYvYnKID~vs~--eevdrl---Ar--~Pn--svViSC~m~lnld~lle~i 283 (364)
T KOG1486|consen 240 KCLYVYNKIDQVSI--EEVDRL---AR--QPN--SVVISCNMKLNLDRLLERI 283 (364)
T ss_pred EEEEEeeccceecH--HHHHHH---hc--CCC--cEEEEeccccCHHHHHHHH
Confidence 35789999999876 554443 33 353 3667777788998888755
No 444
>PRK08304 stage V sporulation protein AD; Validated
Probab=23.13 E-value=1.2e+02 Score=25.68 Aligned_cols=64 Identities=23% Similarity=0.147 Sum_probs=37.4
Q ss_pred EEEEecCC-Cc--hhHHHHHHcCCCC---------------ccceeecccCC-CcccccccccccCH-hHHHhhHhhCCC
Q 030407 15 AAVTNDIF-TK--EDGEFLMRNGALP---------------EERIRAVETGG-CPHAAIREDISINL-GPLEELSNLFKA 74 (178)
Q Consensus 15 aVI~nd~g-~~--iD~~li~~~~~~~---------------~~~~~~l~~Gc-Cc~l~i~~dl~~~l-~~l~~l~~~~~~ 74 (178)
.++..|+| ++ |=.+|+++.|+.. ..++..=.+|| |+.. .+ .-|...+++..+
T Consensus 230 li~tGDlg~vG~~i~~~ll~~~g~~~~~~~~DcG~~iy~~~~q~~~aGgSGc~csa~--------v~~~~~~~~~~~g~~ 301 (337)
T PRK08304 230 LIVTGDLGRVGREILKELLKEEGYDIGDNYNDCGLMIYDSEQQDVFAGGSGCACSAV--------VTYGYLLKELQKGKL 301 (337)
T ss_pred EEEEcchHHHHHHHHHHHHHHhCCChhhcccccCeEEeccCCCcccCCCcccchhHH--------HHHHHHHHHHhcCCc
Confidence 57888888 64 3456676666521 01233334566 5532 12 333344447789
Q ss_pred CEEEEeCCcchhh
Q 030407 75 DLLLCESGGDNLA 87 (178)
Q Consensus 75 d~iiiEttG~~~~ 87 (178)
..|++=+|| ++-
T Consensus 302 ~rvl~v~tG-aLl 313 (337)
T PRK08304 302 KRVLVVATG-ALL 313 (337)
T ss_pred eEEEEEEch-hhc
Confidence 999999999 443
No 445
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.08 E-value=1.3e+02 Score=26.48 Aligned_cols=50 Identities=14% Similarity=0.095 Sum_probs=30.9
Q ss_pred CCceeEEEEecCCCCCchhHhHHHH-----HHHHHhcCCCCCEEEEecccCCCHHHH
Q 030407 118 ITQADLLVINKTDLASAIGADLAVM-----ERDALRMRDGGPFIFAQVGWVIGIIFT 169 (178)
Q Consensus 118 i~~adiiviNK~Dl~~~~~~~~~~~-----~~~l~~~np~a~i~~~SA~~g~gi~el 169 (178)
.+.||++|+|=|=-..+ ++.+.. .+.+++.+|.++++.+-..-...=+++
T Consensus 55 ~~~AD~~iiNTC~v~~~--a~~~~~~~i~~~~~~k~~~p~~~ivv~GC~a~~~~~~~ 109 (459)
T PRK14338 55 PEDADFIVLNSCSVRAS--AEERILGKLGELQRLKRQRPDTRIVLWGCMVGPNNQSI 109 (459)
T ss_pred cccCCEEEEeccceeeH--HHHHHHHHHHHHHHHHhhCCCCEEEEeCCccccChhHh
Confidence 34589999998887665 333222 234556678888887655544444444
No 446
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=22.24 E-value=47 Score=24.35 Aligned_cols=38 Identities=3% Similarity=-0.136 Sum_probs=30.4
Q ss_pred HhHHHHHHHHHhcCCC--CCEEEEecccCCCHHHHHHHHhh
Q 030407 137 ADLAVMERDALRMRDG--GPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 137 ~~~~~~~~~l~~~np~--a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
..-+.+.++|+ -||. |.+..+|..||..++.+..+|.+
T Consensus 30 ~~f~kV~~yLr-~~p~~~ati~eV~e~tgVs~~~I~~~Ire 69 (137)
T TIGR03826 30 REFEKVYKFLR-KHENRQATVSEIVEETGVSEKLILKFIRE 69 (137)
T ss_pred HHHHHHHHHHH-HCCCCCCCHHHHHHHHCcCHHHHHHHHHc
Confidence 34456777777 4787 99999999999999999888753
No 447
>KOG1766 consensus Enhancer of rudimentary [General function prediction only]
Probab=21.76 E-value=1.4e+02 Score=20.54 Aligned_cols=32 Identities=13% Similarity=0.109 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
...++.+++.||.++-+. -.|..||++|..++
T Consensus 34 k~yEe~Lkk~nPs~~~IT------YDIsqlfeFiD~L~ 65 (104)
T KOG1766|consen 34 KMYEEHLKKKNPSAPPIT------YDISQLFEFIDDLA 65 (104)
T ss_pred HHHHHHHHhcCCCCCCcc------eeHHHHHHHHHHHh
Confidence 456788899999765432 56888888887654
No 448
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=21.64 E-value=37 Score=23.94 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=21.6
Q ss_pred HhhcCCcEEEEEecCC-CchhHHHHHHcCCCCccceeecccCCCc
Q 030407 7 FLRDKYSLAAVTNDIF-TKEDGEFLMRNGALPEERIRAVETGGCP 50 (178)
Q Consensus 7 ~~~~~~~vaVI~nd~g-~~iD~~li~~~~~~~~~~~~~l~~GcCc 50 (178)
.+.++..-|.+.||=- ++.- |- ..++-+=.+||||
T Consensus 42 fi~~RLapA~p~nDGkQTPmr-------GH--PVFiAQHATatCC 77 (111)
T PF13811_consen 42 FIAKRLAPAQPPNDGKQTPMR-------GH--PVFIAQHATATCC 77 (111)
T ss_pred HHHHHhCccCCCCCCCCCCCC-------CC--CeeeecCCCccch
Confidence 3344566788888832 6652 32 1266677778888
No 449
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=21.29 E-value=1.1e+02 Score=26.04 Aligned_cols=102 Identities=19% Similarity=0.190 Sum_probs=57.5
Q ss_pred CCCEEEEeCCcch-hh----hcccccccceEEEEEeCCCCCCCCcCC------------------CCCC-CceeEEEEec
Q 030407 73 KADLLLCESGGDN-LA----ANFSRELADYIIYIIDVSGGDKIPRKG------------------GPGI-TQADLLVINK 128 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~----~~~~~~~ad~~I~VvD~~~~~~~~~~~------------------~~qi-~~adiiviNK 128 (178)
+..+-+++..|.. -. ..| +..+.+|+|++.++.+.....- .+.+ ..+-++++||
T Consensus 235 ~~~~~~~DvGGqr~eRkKW~~~F--~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK 312 (389)
T PF00503_consen 235 SRKFRLIDVGGQRSERKKWIHCF--EDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNK 312 (389)
T ss_dssp TEEEEEEEETSSGGGGGGGGGGG--TTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-
T ss_pred ccccceecCCCCchhhhhHHHHh--ccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeec
Confidence 4556777777731 11 122 2468899999987765421110 0112 3467899999
Q ss_pred CCCCCc---------------hh---HhHHHHHHHHHhc----CCC----C--CEEEEecccCCCHHHHHHHHhhh
Q 030407 129 TDLASA---------------IG---ADLAVMERDALRM----RDG----G--PFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 129 ~Dl~~~---------------~~---~~~~~~~~~l~~~----np~----a--~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.|+..+ .+ ...+.+.++++.. ++. . .++.|+|...+.+..+|+.+...
T Consensus 313 ~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~ 388 (389)
T PF00503_consen 313 IDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI 388 (389)
T ss_dssp HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence 997311 01 1334444445433 221 2 34578888888899998887654
No 450
>PRK03094 hypothetical protein; Provisional
Probab=21.13 E-value=1e+02 Score=20.42 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=31.1
Q ss_pred ecCC-CchhHHHHHHcCCCCccceeeccc-----CC-CcccccccccccCHhHHHhhHhhCCCCEEEEeCCcc
Q 030407 19 NDIF-TKEDGEFLMRNGALPEERIRAVET-----GG-CPHAAIREDISINLGPLEELSNLFKADLLLCESGGD 84 (178)
Q Consensus 19 nd~g-~~iD~~li~~~~~~~~~~~~~l~~-----Gc-Cc~l~i~~dl~~~l~~l~~l~~~~~~d~iiiEttG~ 84 (178)
-|-| +++... +++.|+ .|+.|.+ +| ||-.+ ..+..+..+. .......+|+++|.
T Consensus 6 VE~~Ls~i~~~-L~~~GY----eVv~l~~~~~~~~~Da~Vit---G~d~n~mgi~----d~~t~~pVI~A~G~ 66 (80)
T PRK03094 6 VEQSLTDVQQA-LKQKGY----EVVQLRSEQDAQGCDCCVVT---GQDSNVMGIA----DTSTKGSVITASGL 66 (80)
T ss_pred eecCcHHHHHH-HHHCCC----EEEecCcccccCCcCEEEEe---CCCcceeccc----ccccCCcEEEcCCC
Confidence 4667 677544 456688 6777754 68 88432 1122222221 22467889999994
No 451
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=21.02 E-value=1.3e+02 Score=23.84 Aligned_cols=35 Identities=14% Similarity=0.211 Sum_probs=21.8
Q ss_pred CCCCEEEEeCCcch----hhhcccccccceEEEEEeCCC
Q 030407 72 FKADLLLCESGGDN----LAANFSRELADYIIYIIDVSG 106 (178)
Q Consensus 72 ~~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~ 106 (178)
.++|+|||.|.|.. +..+.....+|.+++++.++.
T Consensus 112 ~~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~~ 150 (264)
T PRK13231 112 EDIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEY 150 (264)
T ss_pred CCCCEEEEecCCCceEccccccccccccceeEEEecCch
Confidence 46999999998721 111111124688888887754
No 452
>PRK10818 cell division inhibitor MinD; Provisional
Probab=21.01 E-value=1.3e+02 Score=23.88 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=23.1
Q ss_pred CCCCEEEEeCCcchhhhc--ccccccceEEEEEeCCCC
Q 030407 72 FKADLLLCESGGDNLAAN--FSRELADYIIYIIDVSGG 107 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~~~--~~~~~ad~~I~VvD~~~~ 107 (178)
..+|+|+|.+.|. +... .....+|.++++++++..
T Consensus 112 ~~yd~viiD~p~~-~~~~~~~~l~~ad~vivv~~p~~~ 148 (270)
T PRK10818 112 MDFEFIVCDSPAG-IETGALMALYFADEAIITTNPEVS 148 (270)
T ss_pred cCCCEEEEeCCCC-ccHHHHHHHHhCCeEEEEcCCCch
Confidence 4799999999872 2211 111246999999988643
No 453
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=20.89 E-value=71 Score=28.39 Aligned_cols=25 Identities=16% Similarity=0.073 Sum_probs=22.6
Q ss_pred CCEEEEecccCCCHHHHHHHHhhhh
Q 030407 153 GPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 153 a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
.|+|+-||+++-|++.+++.+-.+|
T Consensus 251 TPVFFGSAl~NFGV~~~L~~~~~~A 275 (528)
T COG4108 251 TPVFFGSALGNFGVDHFLDALVDWA 275 (528)
T ss_pred cceEehhhhhccCHHHHHHHHHhhC
Confidence 5999999999999999999887664
No 454
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=20.73 E-value=47 Score=19.89 Aligned_cols=9 Identities=11% Similarity=0.327 Sum_probs=5.4
Q ss_pred ceeecccCC
Q 030407 40 RIRAVETGG 48 (178)
Q Consensus 40 ~~~~l~~Gc 48 (178)
.+.--.+||
T Consensus 18 qvtvapggc 26 (56)
T TIGR03602 18 KVTVAPGGC 26 (56)
T ss_pred eeEecCCCe
Confidence 344566777
No 455
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.73 E-value=1.9e+02 Score=25.24 Aligned_cols=49 Identities=16% Similarity=0.012 Sum_probs=29.2
Q ss_pred CceeEEEEecCCCCCchhHhHHHHHH------HHHhcCCCCCEEEEecccCCCHHHHH
Q 030407 119 TQADLLVINKTDLASAIGADLAVMER------DALRMRDGGPFIFAQVGWVIGIIFTL 170 (178)
Q Consensus 119 ~~adiiviNK~Dl~~~~~~~~~~~~~------~l~~~np~a~i~~~SA~~g~gi~el~ 170 (178)
+.||++|+|=|=-..+ ++. ++.+ .+++.+|.++++.+-..-...=+++.
T Consensus 42 ~~ADviiiNTC~v~~~--A~~-k~~~~i~~~~~~k~~~~~~~ivv~GC~a~~~~~e~~ 96 (445)
T PRK14340 42 EDADIVLLNTCAVREN--AVE-RIGHYLQHLKGAKRRRKGLLVGVLGCVPQYEREEMF 96 (445)
T ss_pred ccCCEEEEEeeeeecc--HHH-HHHHHHHHHHHHhhcCCCCEEEEeCcccccchHHHH
Confidence 4589999998877665 332 2222 34456787777776655433334443
No 456
>PRK11573 hypothetical protein; Provisional
Probab=20.50 E-value=77 Score=27.45 Aligned_cols=24 Identities=4% Similarity=-0.117 Sum_probs=19.2
Q ss_pred HHHHHHhhcC-CcEEEEEecCC-C-ch
Q 030407 2 LALCKFLRDK-YSLAAVTNDIF-T-KE 25 (178)
Q Consensus 2 ~~~~~~~~~~-~~vaVI~nd~g-~-~i 25 (178)
.++++.++++ ..+|++++|+| + |+
T Consensus 274 ~~lL~~~~~~~~~~AiVvDEyG~~~Gi 300 (413)
T PRK11573 274 STQLVKFQRNKKKVGLVVDEYGDIQGL 300 (413)
T ss_pred HHHHHHHHhcCCeEEEEEecCCCeEEE
Confidence 4678888765 88999999999 3 54
No 457
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=20.26 E-value=2e+02 Score=22.08 Aligned_cols=102 Identities=11% Similarity=0.036 Sum_probs=55.0
Q ss_pred CCCCEEEEeCCcch------------hhhc--ccccccceEEEEEeCCCCCCCCc--------CCCCCCCceeEEEEecC
Q 030407 72 FKADLLLCESGGDN------------LAAN--FSRELADYIIYIIDVSGGDKIPR--------KGGPGITQADLLVINKT 129 (178)
Q Consensus 72 ~~~d~iiiEttG~~------------~~~~--~~~~~ad~~I~VvD~~~~~~~~~--------~~~~qi~~adiiviNK~ 129 (178)
.+..+.+|+|.|.. +... ...+..|.+++|+...+...... .+.+.+-.--+||++..
T Consensus 47 ~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~ 126 (212)
T PF04548_consen 47 DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIWKHTIVVFTHA 126 (212)
T ss_dssp TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEG
T ss_pred cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHHhHhhHHhhhc
Confidence 35789999999941 0010 11224588999999874321111 12223333357888888
Q ss_pred CCCCchhHhHH---------HHHHHHHhcCCCCCEEEEecc------cCCCHHHHHHHHhhhh
Q 030407 130 DLASAIGADLA---------VMERDALRMRDGGPFIFAQVG------WVIGIIFTLSITHYIV 177 (178)
Q Consensus 130 Dl~~~~~~~~~---------~~~~~l~~~np~a~i~~~SA~------~g~gi~el~~~l~~~~ 177 (178)
|-..+ ..++ .+.+.++... .+++..+.+ ....+.+|++.+..++
T Consensus 127 d~~~~--~~~~~~l~~~~~~~l~~li~~c~--~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv 185 (212)
T PF04548_consen 127 DELED--DSLEDYLKKESNEALQELIEKCG--GRYHVFNNKTKDKEKDESQVSELLEKIEEMV 185 (212)
T ss_dssp GGGTT--TTHHHHHHHHHHHHHHHHHHHTT--TCEEECCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccc--ccHHHHHhccCchhHhHHhhhcC--CEEEEEeccccchhhhHHHHHHHHHHHHHHH
Confidence 87665 2221 2334444332 366666655 3456888888877654
No 458
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=20.25 E-value=1.5e+02 Score=25.60 Aligned_cols=86 Identities=8% Similarity=0.093 Sum_probs=40.8
Q ss_pred hHhhCCCCEEEEeCC--cchhhh--ccc-ccccceEEEEEeCCCCCCCCcCCCCCCCceeEEEEecCCCCCchhHhHHHH
Q 030407 68 LSNLFKADLLLCESG--GDNLAA--NFS-RELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVM 142 (178)
Q Consensus 68 l~~~~~~d~iiiEtt--G~~~~~--~~~-~~~ad~~I~VvD~~~~~~~~~~~~~qi~~adiiviNK~Dl~~~~~~~~~~~ 142 (178)
++...+-|+|=||+. |..... ++. .....-.-+.+|....... ....+.++.||++|=|=-- .+-+.+.-=
T Consensus 32 lLAdlGAeVIKVE~p~~GD~~R~~~~~~~~~NrgKrsi~LDLk~~~Gr-~~l~~Li~~ADVvien~rp---g~~~rlGl~ 107 (405)
T PRK03525 32 MFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGR-EAFLKLMETTDIFIEASKG---PAFARRGIT 107 (405)
T ss_pred HHHHcCCcEEEECCCCCCCccccccchhhhccCCCeeEEEeCCCHHHH-HHHHHHHHhCCEEEECCCc---cHHHHcCCC
Confidence 334668999999987 422221 111 1011233344554332111 1122347789999988111 000111112
Q ss_pred HHHHHhcCCCCCEEEEe
Q 030407 143 ERDALRMRDGGPFIFAQ 159 (178)
Q Consensus 143 ~~~l~~~np~a~i~~~S 159 (178)
.+.+++.|| +++.+|
T Consensus 108 ~e~L~~~nP--~LIy~s 122 (405)
T PRK03525 108 DEVLWEHNP--KLVIAH 122 (405)
T ss_pred HHHHHHhCC--CeEEEE
Confidence 345677899 456655
Done!