Query 030407
Match_columns 178
No_of_seqs 212 out of 1497
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 21:34:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030407.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030407hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsm_A Hydrogenase expression/ 99.8 6.5E-20 2.2E-24 141.9 8.0 162 2-176 48-211 (221)
2 2hf9_A Probable hydrogenase ni 99.8 4.5E-18 1.5E-22 131.9 10.5 164 2-176 56-221 (226)
3 3p32_A Probable GTPase RV1496/ 99.7 1.2E-17 4.2E-22 139.1 13.1 166 2-176 97-281 (355)
4 2www_A Methylmalonic aciduria 99.7 5.7E-17 1.9E-21 135.0 11.7 167 2-176 92-276 (349)
5 1nij_A Hypothetical protein YJ 99.7 1.5E-17 5.3E-22 136.7 1.7 139 10-161 29-188 (318)
6 2p67_A LAO/AO transport system 99.5 1.1E-13 3.7E-18 114.7 9.6 168 3-176 75-258 (341)
7 2qm8_A GTPase/ATPase; G protei 99.4 2.4E-12 8.1E-17 106.6 11.4 169 4-176 75-258 (337)
8 1yrb_A ATP(GTP)binding protein 99.3 6.9E-13 2.4E-17 104.8 4.5 161 2-176 32-254 (262)
9 3iev_A GTP-binding protein ERA 99.0 8.5E-10 2.9E-14 90.0 6.9 102 73-176 58-179 (308)
10 4dhe_A Probable GTP-binding pr 99.0 1.3E-09 4.6E-14 83.4 7.0 104 72-177 77-209 (223)
11 1f6b_A SAR1; gtpases, N-termin 98.9 2.5E-09 8.6E-14 81.1 7.7 102 73-177 68-197 (198)
12 3pqc_A Probable GTP-binding pr 98.9 2.2E-09 7.6E-14 80.0 5.2 103 73-177 67-192 (195)
13 1zj6_A ADP-ribosylation factor 98.9 8.5E-09 2.9E-13 76.9 8.3 102 73-177 59-176 (187)
14 1m2o_B GTP-binding protein SAR 98.9 5.6E-09 1.9E-13 78.6 7.3 101 73-176 66-189 (190)
15 4bas_A ADP-ribosylation factor 98.8 3.2E-09 1.1E-13 79.6 5.3 102 72-176 61-186 (199)
16 1moz_A ARL1, ADP-ribosylation 98.8 1.5E-08 5.2E-13 74.9 8.6 101 73-176 61-177 (183)
17 1upt_A ARL1, ADP-ribosylation 98.8 1.8E-08 6E-13 73.5 8.8 101 73-176 50-166 (171)
18 1ksh_A ARF-like protein 2; sma 98.8 9.5E-09 3.3E-13 76.4 7.4 101 73-176 61-177 (186)
19 2h57_A ADP-ribosylation factor 98.8 1.2E-08 4.1E-13 76.3 7.7 102 73-177 66-185 (190)
20 1svi_A GTP-binding protein YSX 98.8 6.1E-09 2.1E-13 77.9 6.0 102 74-177 69-193 (195)
21 1r8s_A ADP-ribosylation factor 98.8 1.7E-08 5.9E-13 73.1 7.4 101 73-176 43-159 (164)
22 2h17_A ADP-ribosylation factor 98.8 2.2E-08 7.4E-13 74.4 7.9 101 73-176 64-180 (181)
23 2x77_A ADP-ribosylation factor 98.8 2.5E-08 8.4E-13 74.4 8.0 101 73-176 65-181 (189)
24 1zd9_A ADP-ribosylation factor 98.7 1.5E-08 5.3E-13 75.7 6.5 103 72-177 65-183 (188)
25 3q72_A GTP-binding protein RAD 98.7 2E-08 7E-13 72.9 6.9 101 73-176 48-161 (166)
26 1ky3_A GTP-binding protein YPT 98.7 2.8E-08 9.6E-13 73.0 7.7 102 73-176 57-175 (182)
27 3t1o_A Gliding protein MGLA; G 98.7 1.1E-08 3.8E-13 76.2 5.5 100 73-176 73-189 (198)
28 2b6h_A ADP-ribosylation factor 98.7 2.2E-08 7.4E-13 75.4 6.8 102 72-176 71-188 (192)
29 4dkx_A RAS-related protein RAB 98.7 1E-08 3.6E-13 79.5 4.9 100 73-175 61-172 (216)
30 4dcu_A GTP-binding protein ENG 98.7 4.1E-09 1.4E-13 90.2 2.7 103 74-176 243-366 (456)
31 3tkl_A RAS-related protein RAB 98.7 9.8E-09 3.4E-13 76.7 4.4 101 73-176 64-176 (196)
32 1wms_A RAB-9, RAB9, RAS-relate 98.7 6.3E-08 2.2E-12 71.0 8.7 101 73-176 55-171 (177)
33 1vg8_A RAS-related protein RAB 98.7 2.5E-08 8.7E-13 75.2 6.7 102 73-176 56-172 (207)
34 1z0f_A RAB14, member RAS oncog 98.7 1.4E-08 4.9E-13 74.4 5.1 101 73-176 63-175 (179)
35 3tw8_B RAS-related protein RAB 98.7 6.2E-09 2.1E-13 76.5 3.1 100 74-176 58-168 (181)
36 2bov_A RAla, RAS-related prote 98.7 1.5E-08 5.1E-13 76.3 5.2 101 73-176 61-174 (206)
37 1fzq_A ADP-ribosylation factor 98.7 2.8E-08 9.6E-13 74.0 6.7 102 73-177 59-176 (181)
38 1u8z_A RAS-related protein RAL 98.7 8E-09 2.7E-13 74.7 3.5 101 73-176 51-164 (168)
39 2fg5_A RAB-22B, RAS-related pr 98.7 6.4E-09 2.2E-13 78.1 3.0 102 73-177 71-184 (192)
40 1c1y_A RAS-related protein RAP 98.7 1.6E-08 5.3E-13 73.4 5.0 102 73-176 50-164 (167)
41 2nzj_A GTP-binding protein REM 98.7 2.7E-08 9.2E-13 72.8 6.3 101 73-176 51-166 (175)
42 3bc1_A RAS-related protein RAB 98.7 2.7E-08 9.4E-13 73.7 6.3 101 73-176 69-182 (195)
43 2lkc_A Translation initiation 98.7 1.5E-08 5.1E-13 74.5 4.8 102 73-177 54-169 (178)
44 1wf3_A GTP-binding protein; GT 98.7 1.2E-08 4.1E-13 83.0 4.5 101 72-176 53-170 (301)
45 2fh5_B SR-beta, signal recogni 98.7 6.3E-09 2.1E-13 79.3 2.6 102 73-177 53-214 (214)
46 2g6b_A RAS-related protein RAB 98.7 3.2E-08 1.1E-12 72.8 6.3 101 73-176 59-171 (180)
47 2bcg_Y Protein YP2, GTP-bindin 98.7 3E-08 1E-12 75.0 6.1 101 73-176 56-168 (206)
48 1z08_A RAS-related protein RAB 98.7 1.2E-08 4.3E-13 74.2 3.8 101 73-176 54-166 (170)
49 2a9k_A RAS-related protein RAL 98.7 1.2E-08 4E-13 75.4 3.6 101 73-176 65-178 (187)
50 2efe_B Small GTP-binding prote 98.7 2.8E-08 9.5E-13 73.2 5.7 102 73-177 60-173 (181)
51 2qu8_A Putative nucleolar GTP- 98.7 2.2E-08 7.6E-13 77.4 5.2 104 73-176 75-202 (228)
52 2f7s_A C25KG, RAS-related prot 98.7 8.7E-08 3E-12 73.0 8.5 101 73-176 83-196 (217)
53 2fu5_C RAS-related protein RAB 98.7 2.6E-08 9E-13 73.6 5.4 101 73-176 56-168 (183)
54 3o47_A ADP-ribosylation factor 98.7 4.2E-08 1.5E-12 80.6 7.0 102 73-177 208-325 (329)
55 1x3s_A RAS-related protein RAB 98.6 5.8E-08 2E-12 72.3 7.1 100 73-176 63-175 (195)
56 3lvq_E ARF-GAP with SH3 domain 98.6 5.7E-08 2E-12 83.6 7.9 103 73-177 365-482 (497)
57 2gf9_A RAS-related protein RAB 98.6 4.3E-08 1.5E-12 73.1 6.3 101 73-176 70-182 (189)
58 3q85_A GTP-binding protein REM 98.6 3.2E-08 1.1E-12 72.0 5.4 102 73-176 50-164 (169)
59 3kkq_A RAS-related protein M-R 98.6 4.3E-08 1.5E-12 72.5 6.1 100 74-176 66-179 (183)
60 3oes_A GTPase rhebl1; small GT 98.6 2E-08 6.9E-13 75.9 4.2 101 73-176 71-184 (201)
61 3gee_A MNME, tRNA modification 98.6 3.5E-08 1.2E-12 85.2 6.1 100 72-176 279-395 (476)
62 3clv_A RAB5 protein, putative; 98.6 2.3E-08 7.9E-13 74.5 4.4 99 74-176 93-201 (208)
63 1z0j_A RAB-22, RAS-related pro 98.6 2.7E-08 9.4E-13 72.2 4.7 101 73-176 54-166 (170)
64 1z2a_A RAS-related protein RAB 98.6 7.4E-09 2.5E-13 75.2 1.6 101 73-176 53-164 (168)
65 3t5g_A GTP-binding protein RHE 98.6 2.2E-08 7.4E-13 74.0 4.1 101 73-176 53-166 (181)
66 2oil_A CATX-8, RAS-related pro 98.6 5.9E-08 2E-12 72.5 6.5 101 73-176 73-185 (193)
67 2bme_A RAB4A, RAS-related prot 98.6 3.1E-08 1.1E-12 73.3 4.9 100 74-176 59-170 (186)
68 1wb1_A Translation elongation 98.6 3.2E-08 1.1E-12 85.4 5.7 102 73-176 72-186 (482)
69 2a5j_A RAS-related protein RAB 98.6 3.4E-08 1.2E-12 73.9 5.1 101 73-176 69-181 (191)
70 2il1_A RAB12; G-protein, GDP, 98.6 2E-08 6.8E-13 75.5 3.8 102 73-176 74-187 (192)
71 1r2q_A RAS-related protein RAB 98.6 3.5E-08 1.2E-12 71.6 4.8 102 73-177 54-167 (170)
72 2hup_A RAS-related protein RAB 98.6 3.5E-08 1.2E-12 74.8 4.8 102 73-176 77-190 (201)
73 1kao_A RAP2A; GTP-binding prot 98.6 2.3E-08 7.8E-13 72.2 3.6 101 73-176 50-163 (167)
74 2ce2_X GTPase HRAS; signaling 98.6 5.3E-08 1.8E-12 70.1 5.5 100 73-176 50-162 (166)
75 3sjy_A Translation initiation 98.6 4.8E-08 1.6E-12 82.3 6.1 101 74-176 75-189 (403)
76 1g16_A RAS-related protein SEC 98.6 4.9E-08 1.7E-12 70.9 5.3 100 73-176 51-162 (170)
77 4dsu_A GTPase KRAS, isoform 2B 98.6 7.9E-08 2.7E-12 71.1 6.4 100 73-176 51-163 (189)
78 2erx_A GTP-binding protein DI- 98.6 3.5E-08 1.2E-12 71.7 4.3 102 73-177 50-165 (172)
79 1zbd_A Rabphilin-3A; G protein 98.6 5.6E-08 1.9E-12 73.2 5.5 101 73-176 56-168 (203)
80 1xzp_A Probable tRNA modificat 98.6 4.9E-08 1.7E-12 84.4 5.7 99 73-176 290-402 (482)
81 2o52_A RAS-related protein RAB 98.6 3.9E-08 1.3E-12 74.4 4.4 101 73-176 73-185 (200)
82 2y8e_A RAB-protein 6, GH09086P 98.6 3.9E-08 1.3E-12 72.0 4.2 101 73-176 62-174 (179)
83 3dz8_A RAS-related protein RAB 98.6 3.3E-08 1.1E-12 74.0 3.8 102 72-176 70-183 (191)
84 2ew1_A RAS-related protein RAB 98.6 7.6E-08 2.6E-12 73.3 5.9 101 73-176 74-186 (201)
85 2hxs_A RAB-26, RAS-related pro 98.6 3.3E-08 1.1E-12 72.6 3.6 100 74-176 56-170 (178)
86 4djt_A GTP-binding nuclear pro 98.5 5.9E-08 2E-12 74.0 4.8 101 74-176 61-172 (218)
87 2fn4_A P23, RAS-related protei 98.5 1.8E-08 6E-13 74.0 1.7 101 73-176 56-169 (181)
88 4gzl_A RAS-related C3 botulinu 98.5 4.5E-08 1.5E-12 74.3 4.0 101 73-177 77-203 (204)
89 3ihw_A Centg3; RAS, centaurin, 98.5 1.5E-07 5.1E-12 70.4 6.7 101 73-176 66-177 (184)
90 1u0l_A Probable GTPase ENGC; p 98.5 6.2E-08 2.1E-12 78.7 5.0 79 94-174 84-168 (301)
91 3con_A GTPase NRAS; structural 98.5 1.2E-07 4E-12 70.6 6.0 100 73-176 68-180 (190)
92 2atx_A Small GTP binding prote 98.5 1.1E-07 3.8E-12 71.0 6.0 102 73-176 65-190 (194)
93 3cbq_A GTP-binding protein REM 98.5 1.1E-07 3.9E-12 71.7 6.0 101 73-176 71-185 (195)
94 2iwr_A Centaurin gamma 1; ANK 98.5 1.2E-07 4E-12 69.8 5.8 101 73-176 53-166 (178)
95 3reg_A RHO-like small GTPase; 98.5 8E-08 2.7E-12 72.0 4.9 102 73-176 70-185 (194)
96 2yc2_C IFT27, small RAB-relate 98.5 7.3E-08 2.5E-12 72.5 4.7 101 73-176 72-189 (208)
97 1ek0_A Protein (GTP-binding pr 98.5 8.1E-08 2.8E-12 69.6 4.6 101 73-176 51-166 (170)
98 1z06_A RAS-related protein RAB 98.5 1.4E-07 4.7E-12 70.3 5.9 101 73-176 68-185 (189)
99 3cpj_B GTP-binding protein YPT 98.5 6E-08 2.1E-12 74.6 3.8 101 73-176 61-173 (223)
100 1mh1_A RAC1; GTP-binding, GTPa 98.5 7.7E-08 2.6E-12 70.9 4.1 103 73-177 52-178 (186)
101 2j1l_A RHO-related GTP-binding 98.5 8.5E-08 2.9E-12 73.3 4.5 100 73-176 81-206 (214)
102 2gf0_A GTP-binding protein DI- 98.5 1.5E-07 5.3E-12 70.3 5.6 100 73-176 55-168 (199)
103 3bwd_D RAC-like GTP-binding pr 98.5 5.7E-08 2E-12 71.5 2.9 102 73-176 55-178 (182)
104 2g3y_A GTP-binding protein GEM 98.5 2.5E-07 8.7E-12 71.3 6.7 102 73-176 86-200 (211)
105 2gco_A H9, RHO-related GTP-bin 98.5 1E-07 3.6E-12 72.0 4.4 100 73-176 72-197 (201)
106 3cph_A RAS-related protein SEC 98.5 1.4E-07 4.8E-12 71.3 5.1 101 73-176 68-179 (213)
107 2fv8_A H6, RHO-related GTP-bin 98.5 9.6E-08 3.3E-12 72.5 4.1 100 73-176 72-197 (207)
108 3geh_A MNME, tRNA modification 98.5 6.5E-08 2.2E-12 83.2 3.4 100 72-177 270-382 (462)
109 2q3h_A RAS homolog gene family 98.5 7.4E-08 2.5E-12 72.4 3.3 102 73-176 67-192 (201)
110 2atv_A RERG, RAS-like estrogen 98.5 9.6E-08 3.3E-12 71.7 3.8 101 73-176 75-188 (196)
111 1ega_A Protein (GTP-binding pr 98.5 1.9E-07 6.6E-12 75.7 5.7 103 72-176 54-172 (301)
112 2j0v_A RAC-like GTP-binding pr 98.4 7.1E-08 2.4E-12 73.2 2.8 102 73-176 56-177 (212)
113 3th5_A RAS-related C3 botulinu 97.8 2.3E-08 8E-13 75.6 0.0 102 73-176 77-202 (204)
114 2e87_A Hypothetical protein PH 98.4 3.7E-07 1.3E-11 75.6 7.1 100 73-176 213-333 (357)
115 2p5s_A RAS and EF-hand domain 98.4 1.4E-07 4.7E-12 71.1 4.0 101 73-176 76-194 (199)
116 2yv5_A YJEQ protein; hydrolase 98.4 1.4E-07 4.7E-12 76.7 4.2 78 94-175 79-165 (302)
117 1s0u_A EIF-2-gamma, translatio 98.4 2.9E-07 9.9E-12 77.6 6.2 103 74-176 81-195 (408)
118 3l0i_B RAS-related protein RAB 98.4 2E-08 6.7E-13 75.8 -1.2 102 74-177 82-194 (199)
119 2hjg_A GTP-binding protein ENG 98.4 1.5E-07 5E-12 80.1 4.1 83 94-176 257-346 (436)
120 1kk1_A EIF2gamma; initiation o 98.4 2.6E-07 9E-12 77.9 5.6 101 74-176 83-197 (410)
121 3q3j_B RHO-related GTP-binding 98.4 1.6E-07 5.3E-12 72.0 3.9 102 73-176 74-200 (214)
122 3iby_A Ferrous iron transport 98.4 1.8E-08 6E-13 80.1 -1.6 99 73-176 47-164 (256)
123 3gj0_A GTP-binding nuclear pro 98.4 2.7E-08 9.4E-13 76.2 -0.6 99 73-176 63-172 (221)
124 2dyk_A GTP-binding protein; GT 98.3 1.2E-07 4.2E-12 68.2 1.8 98 73-176 48-159 (161)
125 3c5h_A Glucocorticoid receptor 98.3 3.9E-07 1.3E-11 72.0 4.7 80 94-176 162-252 (255)
126 1m7b_A RND3/RHOE small GTP-bin 98.3 2.4E-07 8.1E-12 68.8 3.0 102 73-176 54-180 (184)
127 3j2k_7 ERF3, eukaryotic polype 98.3 9.6E-07 3.3E-11 75.3 6.8 98 73-170 94-216 (439)
128 3cnl_A YLQF, putative uncharac 98.3 2.5E-06 8.6E-11 67.9 8.4 77 94-176 21-98 (262)
129 3cb4_D GTP-binding protein LEP 98.3 1.3E-06 4.5E-11 77.3 7.1 100 74-176 71-179 (599)
130 1mky_A Probable GTP-binding pr 98.3 7.9E-07 2.7E-11 75.6 5.5 82 95-176 264-352 (439)
131 2ywe_A GTP-binding protein LEP 98.3 9.9E-07 3.4E-11 78.1 6.3 100 74-176 73-181 (600)
132 3tr5_A RF-3, peptide chain rel 98.3 1.3E-06 4.5E-11 76.2 6.7 62 73-134 81-149 (528)
133 3a1s_A Iron(II) transport prot 98.3 1E-07 3.5E-12 75.7 -0.4 99 73-176 51-164 (258)
134 3p26_A Elongation factor 1 alp 98.3 6.4E-07 2.2E-11 77.2 4.5 96 73-168 110-227 (483)
135 3k53_A Ferrous iron transport 98.2 3.5E-08 1.2E-12 78.6 -3.2 99 73-176 49-163 (271)
136 3i8s_A Ferrous iron transport 98.2 2.3E-08 8E-13 80.0 -4.4 100 73-177 49-167 (274)
137 1gwn_A RHO-related GTP-binding 98.2 3.9E-07 1.3E-11 69.4 2.6 103 73-177 75-202 (205)
138 1g7s_A Translation initiation 98.2 1.2E-06 4E-11 77.6 5.8 103 74-176 70-215 (594)
139 1puj_A YLQF, conserved hypothe 98.2 1.2E-06 4E-11 70.6 5.3 79 94-176 23-103 (282)
140 2c78_A Elongation factor TU-A; 98.2 7.7E-07 2.6E-11 74.9 4.2 103 73-176 74-209 (405)
141 2wkq_A NPH1-1, RAS-related C3 98.2 7.3E-07 2.5E-11 71.9 3.9 102 73-176 202-327 (332)
142 2elf_A Protein translation elo 98.2 1.5E-06 5E-11 72.7 5.7 100 73-176 59-177 (370)
143 1zun_B Sulfate adenylate trans 98.2 5.2E-07 1.8E-11 76.7 2.8 96 73-168 103-213 (434)
144 1d2e_A Elongation factor TU (E 98.2 1.9E-06 6.5E-11 72.4 6.0 103 72-175 64-191 (397)
145 1lnz_A SPO0B-associated GTP-bi 98.2 1.5E-06 5.2E-11 71.9 5.3 100 74-177 206-328 (342)
146 3dpu_A RAB family protein; roc 98.2 3E-07 1E-11 80.1 0.4 101 73-177 97-206 (535)
147 3llu_A RAS-related GTP-binding 98.1 1.5E-06 5.2E-11 65.2 4.1 102 72-176 67-194 (196)
148 3b1v_A Ferrous iron uptake tra 98.1 3.6E-07 1.2E-11 73.3 0.5 98 73-176 48-161 (272)
149 2cjw_A GTP-binding protein GEM 98.1 2.1E-06 7.4E-11 64.5 4.7 100 74-176 56-169 (192)
150 2aka_B Dynamin-1; fusion prote 98.1 3.9E-07 1.3E-11 72.8 0.5 102 73-175 124-249 (299)
151 2wji_A Ferrous iron transport 98.1 1.1E-07 3.7E-12 69.7 -2.9 101 73-176 49-162 (165)
152 1zo1_I IF2, translation initia 98.1 2.9E-07 1E-11 79.8 -1.1 101 73-176 50-164 (501)
153 3izy_P Translation initiation 98.1 2E-07 6.8E-12 81.5 -2.3 105 73-177 51-166 (537)
154 2qtf_A Protein HFLX, GTP-bindi 98.0 5.3E-06 1.8E-10 69.1 5.9 103 74-176 226-351 (364)
155 2cxx_A Probable GTP-binding pr 98.0 6.1E-06 2.1E-10 60.8 5.7 55 119-176 122-181 (190)
156 2gj8_A MNME, tRNA modification 98.0 1E-06 3.4E-11 65.1 1.2 94 74-176 52-163 (172)
157 1jny_A EF-1-alpha, elongation 98.0 3.9E-06 1.3E-10 71.3 4.9 95 73-168 83-202 (435)
158 3izq_1 HBS1P, elongation facto 98.0 2.7E-06 9.3E-11 75.4 4.0 97 73-169 244-362 (611)
159 3h2y_A GTPase family protein; 98.0 3.9E-06 1.3E-10 70.0 4.6 77 95-175 70-156 (368)
160 3avx_A Elongation factor TS, e 98.0 1E-05 3.5E-10 76.2 7.6 102 73-175 358-482 (1289)
161 3ec1_A YQEH GTPase; atnos1, at 98.0 9.2E-06 3.1E-10 67.7 6.6 81 94-175 71-158 (369)
162 2j69_A Bacterial dynamin-like 98.0 1.1E-05 3.7E-10 72.6 7.2 103 74-176 174-322 (695)
163 3mca_A HBS1, elongation factor 98.0 4.1E-07 1.4E-11 80.4 -2.1 104 73-176 254-394 (592)
164 1mky_A Probable GTP-binding pr 98.0 4.3E-06 1.5E-10 71.0 3.8 98 73-175 48-162 (439)
165 3qq5_A Small GTP-binding prote 98.0 6E-07 2.1E-11 76.4 -1.6 98 75-177 84-194 (423)
166 2xtp_A GTPase IMAP family memb 97.9 6.8E-07 2.3E-11 70.3 -1.3 103 73-176 70-205 (260)
167 2j37_W Signal recognition part 97.9 4.4E-06 1.5E-10 72.5 3.3 160 2-176 119-310 (504)
168 2hjg_A GTP-binding protein ENG 97.9 3E-06 1E-10 72.0 2.0 98 73-176 50-162 (436)
169 1r5b_A Eukaryotic peptide chai 97.9 3.6E-06 1.2E-10 72.3 2.1 98 73-170 120-243 (467)
170 2zej_A Dardarin, leucine-rich 97.9 5.6E-06 1.9E-10 61.4 2.9 101 73-176 55-175 (184)
171 3l82_B F-box only protein 4; T 97.8 4.5E-05 1.5E-09 59.2 7.3 82 94-177 125-221 (227)
172 1f60_A Elongation factor EEF1A 97.8 2.2E-06 7.6E-11 73.4 -0.2 96 73-168 84-201 (458)
173 2wjg_A FEOB, ferrous iron tran 97.8 6.6E-07 2.2E-11 66.3 -3.1 101 73-177 53-167 (188)
174 2qpt_A EH domain-containing pr 97.8 1.1E-05 3.9E-10 70.6 4.1 112 14-147 105-244 (550)
175 3t5d_A Septin-7; GTP-binding p 97.8 1.5E-05 5.3E-10 63.3 4.5 78 95-176 116-201 (274)
176 3c5c_A RAS-like protein 12; GD 97.8 1.1E-05 3.8E-10 60.0 3.4 101 73-176 68-183 (187)
177 1jwy_B Dynamin A GTPase domain 97.8 8.8E-06 3E-10 65.5 2.3 104 73-176 130-259 (315)
178 2x2e_A Dynamin-1; nitration, h 97.7 2.9E-06 9.9E-11 70.1 -1.1 99 73-175 129-254 (353)
179 1t9h_A YLOQ, probable GTPase E 97.7 5.7E-06 1.9E-10 67.5 0.6 75 95-173 87-171 (307)
180 1pui_A ENGB, probable GTP-bind 97.7 2.9E-05 9.9E-10 58.4 4.5 82 94-177 108-197 (210)
181 1dar_A EF-G, elongation factor 97.7 3.6E-05 1.2E-09 69.1 5.6 62 73-134 76-144 (691)
182 3r7w_A Gtpase1, GTP-binding pr 97.7 2.9E-05 9.8E-10 62.9 4.1 99 73-174 51-176 (307)
183 3zvr_A Dynamin-1; hydrolase, D 97.7 7.3E-06 2.5E-10 74.3 0.5 99 73-175 149-274 (772)
184 3dm5_A SRP54, signal recogniti 97.6 4.8E-05 1.6E-09 65.0 5.3 146 2-169 118-281 (443)
185 2h5e_A Peptide chain release f 97.6 0.00014 4.9E-09 63.3 8.3 61 73-134 81-149 (529)
186 2rdo_7 EF-G, elongation factor 97.6 0.00011 3.7E-09 66.2 7.4 62 73-134 81-149 (704)
187 1cip_A Protein (guanine nucleo 97.6 2.6E-05 8.7E-10 64.8 3.1 103 73-176 192-341 (353)
188 4dcu_A GTP-binding protein ENG 97.6 3.2E-05 1.1E-09 66.0 3.7 98 73-176 70-182 (456)
189 1xjc_A MOBB protein homolog; s 97.5 0.00014 5E-09 54.2 6.0 76 2-83 22-106 (169)
190 2xtz_A Guanine nucleotide-bind 97.5 9.3E-05 3.2E-09 61.4 5.2 103 73-176 182-342 (354)
191 2xex_A Elongation factor G; GT 97.5 8.4E-05 2.9E-09 66.7 4.6 62 73-134 74-142 (693)
192 1zcb_A G alpha I/13; GTP-bindi 97.5 5.2E-05 1.8E-09 63.1 2.9 103 73-176 200-350 (362)
193 3vqt_A RF-3, peptide chain rel 97.4 0.00012 4.3E-09 64.0 5.1 60 73-134 99-167 (548)
194 1udx_A The GTP-binding protein 97.4 0.00026 8.9E-09 60.0 6.5 97 74-176 205-322 (416)
195 3l2o_B F-box only protein 4; s 97.3 0.00019 6.6E-09 58.2 4.8 82 94-177 210-306 (312)
196 2dy1_A Elongation factor G; tr 97.3 0.00017 5.9E-09 64.4 4.8 60 73-132 73-139 (665)
197 2f9l_A RAB11B, member RAS onco 97.2 0.0004 1.4E-08 51.8 5.0 100 74-176 54-165 (199)
198 2rcn_A Probable GTPase ENGC; Y 97.2 0.0005 1.7E-08 57.1 5.9 52 120-173 161-213 (358)
199 1azs_C GS-alpha; complex (lyas 97.2 0.00021 7.1E-09 60.3 3.6 24 153-176 359-382 (402)
200 3lxx_A GTPase IMAP family memb 97.2 0.00026 9E-09 54.7 3.9 100 73-176 77-211 (239)
201 3j25_A Tetracycline resistance 97.1 0.00011 3.8E-09 65.4 1.3 61 73-134 66-134 (638)
202 3ohm_A Guanine nucleotide-bind 97.0 0.00055 1.9E-08 56.2 4.5 101 75-176 168-315 (327)
203 1oix_A RAS-related protein RAB 97.0 0.0006 2.1E-08 50.7 4.4 100 74-176 78-189 (191)
204 3r7w_B Gtpase2, GTP-binding pr 96.9 0.0009 3.1E-08 55.0 4.9 98 73-174 45-169 (331)
205 4fid_A G protein alpha subunit 96.9 0.0011 3.7E-08 54.7 5.0 102 74-176 161-325 (340)
206 1nrj_B SR-beta, signal recogni 96.7 7.2E-05 2.5E-09 56.6 -3.4 62 73-134 54-135 (218)
207 3lxw_A GTPase IMAP family memb 96.6 0.00036 1.2E-08 54.6 0.0 103 73-177 69-206 (247)
208 3t34_A Dynamin-related protein 96.4 0.00074 2.5E-08 55.6 0.8 97 73-172 135-254 (360)
209 2qnr_A Septin-2, protein NEDD5 96.3 0.0012 4.3E-08 53.2 1.9 50 121-175 157-210 (301)
210 4fn5_A EF-G 1, elongation fact 96.3 0.0039 1.3E-07 56.0 4.9 58 75-134 86-152 (709)
211 2qag_A Septin-2, protein NEDD5 96.1 0.0023 7.8E-08 52.9 2.5 50 120-172 175-226 (361)
212 2v3c_C SRP54, signal recogniti 96.1 0.00023 7.8E-09 60.6 -3.8 103 72-175 179-307 (432)
213 3kl4_A SRP54, signal recogniti 95.9 0.0071 2.4E-07 51.4 4.4 143 3-167 116-278 (433)
214 1wxq_A GTP-binding protein; st 95.0 0.0043 1.5E-07 52.0 0.1 47 120-170 215-261 (397)
215 2ged_A SR-beta, signal recogni 94.9 0.0038 1.3E-07 45.8 -0.4 72 73-146 90-181 (193)
216 2qag_C Septin-7; cell cycle, c 94.7 0.011 3.7E-07 50.0 1.9 53 119-175 167-223 (418)
217 1j8m_F SRP54, signal recogniti 94.0 0.13 4.3E-06 41.3 6.7 145 3-169 117-281 (297)
218 1n0u_A EF-2, elongation factor 94.0 0.011 3.9E-07 54.1 0.5 59 73-132 97-163 (842)
219 1np6_A Molybdopterin-guanine d 91.8 0.25 8.5E-06 36.4 5.0 25 2-26 24-50 (174)
220 1h65_A Chloroplast outer envel 90.5 0.46 1.6E-05 37.0 5.6 63 72-134 85-169 (270)
221 1zu4_A FTSY; GTPase, signal re 87.4 0.3 1E-05 39.5 2.6 89 71-168 189-295 (320)
222 3e70_C DPA, signal recognition 87.2 1.3 4.4E-05 35.9 6.3 145 4-169 149-310 (328)
223 2xxa_A Signal recognition part 86.7 1.9 6.5E-05 36.3 7.3 118 3-134 119-255 (433)
224 2dby_A GTP-binding protein; GD 85.4 0.3 1E-05 40.4 1.6 49 120-170 202-253 (368)
225 3def_A T7I23.11 protein; chlor 81.9 2.4 8.2E-05 32.6 5.5 62 73-134 83-166 (262)
226 1tq4_A IIGP1, interferon-induc 81.8 1.3 4.3E-05 37.2 4.0 56 119-176 175-250 (413)
227 4dzz_A Plasmid partitioning pr 79.9 4.6 0.00016 29.2 6.2 61 72-134 74-145 (206)
228 1ni3_A YCHF GTPase, YCHF GTP-b 77.4 3.4 0.00012 34.3 5.3 53 119-173 224-301 (392)
229 4a9a_A Ribosome-interacting GT 76.0 3.9 0.00013 33.8 5.2 46 121-175 251-296 (376)
230 2ffh_A Protein (FFH); SRP54, s 75.7 3.9 0.00013 34.4 5.2 144 3-168 117-278 (425)
231 3sop_A Neuronal-specific septi 69.2 3.4 0.00012 32.3 3.2 49 95-147 112-166 (270)
232 2qag_B Septin-6, protein NEDD5 68.6 2.4 8.3E-05 35.7 2.3 60 98-160 152-217 (427)
233 3h2y_A GTPase family protein; 66.7 0.78 2.7E-05 37.7 -1.1 89 75-166 212-317 (368)
234 3ec1_A YQEH GTPase; atnos1, at 66.6 1 3.4E-05 37.0 -0.5 91 75-168 213-320 (369)
235 1vma_A Cell division protein F 65.6 2.2 7.4E-05 34.2 1.4 90 71-169 184-291 (306)
236 2yhs_A FTSY, cell division pro 63.6 1.7 5.7E-05 37.6 0.3 90 71-169 373-480 (503)
237 2px0_A Flagellar biosynthesis 63.5 5.1 0.00017 31.7 3.2 85 72-166 181-278 (296)
238 2xj4_A MIPZ; replication, cell 57.9 15 0.00053 28.3 5.1 33 72-105 102-136 (286)
239 1jal_A YCHF protein; nucleotid 53.6 26 0.00089 28.7 5.9 41 120-162 200-240 (363)
240 1ko7_A HPR kinase/phosphatase; 48.0 12 0.00041 30.1 3.0 46 122-175 82-127 (314)
241 3of5_A Dethiobiotin synthetase 46.6 29 0.001 26.1 4.9 35 72-107 109-152 (228)
242 3qxc_A Dethiobiotin synthetase 42.7 45 0.0015 25.4 5.4 92 72-173 130-238 (242)
243 2g04_A Probable fatty-acid-COA 41.3 42 0.0015 27.3 5.3 80 69-159 28-112 (359)
244 2ohf_A Protein OLA1, GTP-bindi 37.8 27 0.00091 29.0 3.6 44 120-163 223-268 (396)
245 3fgn_A Dethiobiotin synthetase 37.0 59 0.002 24.9 5.3 104 3-107 46-169 (251)
246 2obn_A Hypothetical protein; s 36.8 73 0.0025 25.9 6.0 94 72-174 224-347 (349)
247 3q9l_A Septum site-determining 35.6 39 0.0013 25.1 4.0 33 73-106 113-147 (260)
248 3la6_A Tyrosine-protein kinase 33.7 33 0.0011 26.7 3.4 63 72-134 200-269 (286)
249 3kjh_A CO dehydrogenase/acetyl 33.4 53 0.0018 24.0 4.4 71 71-146 129-206 (254)
250 1wcv_1 SOJ, segregation protei 32.7 29 0.00098 26.1 2.8 34 72-106 110-145 (257)
251 3cio_A ETK, tyrosine-protein k 31.3 38 0.0013 26.5 3.4 36 72-107 212-249 (299)
252 1cp2_A CP2, nitrogenase iron p 30.6 34 0.0011 25.7 2.9 34 72-105 114-151 (269)
253 1g3q_A MIND ATPase, cell divis 29.8 42 0.0014 24.5 3.3 62 72-134 110-178 (237)
254 2ph1_A Nucleotide-binding prot 27.7 63 0.0021 24.3 4.0 59 72-131 127-194 (262)
255 2afh_E Nitrogenase iron protei 25.6 46 0.0016 25.4 2.9 34 72-105 117-154 (289)
256 3bfv_A CAPA1, CAPB2, membrane 25.5 36 0.0012 26.2 2.3 61 72-132 190-257 (271)
257 3pg5_A Uncharacterized protein 25.0 83 0.0028 25.1 4.5 34 72-105 152-186 (361)
258 2jvf_A De novo protein M7; tet 24.6 59 0.002 20.3 2.7 36 141-176 37-72 (96)
259 1byi_A Dethiobiotin synthase; 24.4 54 0.0018 23.7 3.0 12 72-83 107-118 (224)
260 1hyq_A MIND, cell division inh 23.4 53 0.0018 24.5 2.9 62 72-134 109-177 (263)
261 3k9g_A PF-32 protein; ssgcid, 23.0 88 0.003 23.3 4.1 34 72-106 143-178 (267)
262 1g1p_A Conotoxin EVIA; three d 22.0 29 0.001 17.5 0.7 9 43-51 14-22 (33)
263 2yim_A Probable alpha-methylac 21.8 59 0.002 26.5 2.9 81 70-159 27-110 (360)
264 3ea0_A ATPase, para family; al 21.0 50 0.0017 24.2 2.2 69 73-145 118-196 (245)
265 3end_A Light-independent proto 20.6 1.1E+02 0.0039 23.3 4.4 33 72-105 155-190 (307)
No 1
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.80 E-value=6.5e-20 Score=141.88 Aligned_cols=162 Identities=26% Similarity=0.301 Sum_probs=113.7
Q ss_pred HHHHHHhhcCCcEEEEEecCCCchhHHHHHHcCCCCccceeecccCC-CcccccccccccCH-hHHHhhHhhCCCCEEEE
Q 030407 2 LALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINL-GPLEELSNLFKADLLLC 79 (178)
Q Consensus 2 ~~~~~~~~~~~~vaVI~nd~g~~iD~~li~~~~~~~~~~~~~l~~Gc-Cc~l~i~~dl~~~l-~~l~~l~~~~~~d~iii 79 (178)
.+++..+....++++|.||++.++|...++..|. .+..+.+|| ||.. ...+ ..+. ...++|+++|
T Consensus 48 ~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~----~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~d~iii 114 (221)
T 2wsm_A 48 ERTIERIGNEVKIGAMLGDVVSKADYERVRRFGI----KAEAISTGKECHLD------AHMIYHRLK---KFSDCDLLLI 114 (221)
T ss_dssp HHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTC----EEEECCCTTCSSCC------HHHHHTTGG---GGTTCSEEEE
T ss_pred HHHHHHhccCCeEEEEecCCCCchhHHHHHhCCC----cEEEecCCceeecc------cHHHHHHHH---hcCCCCEEEE
Confidence 3555555445789999999998899998876565 678888898 6632 1112 1111 2457999999
Q ss_pred eCCcchhhhcccccccceEEEEEeCCCCCCCCcCCCCCCCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEe
Q 030407 80 ESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQ 159 (178)
Q Consensus 80 EttG~~~~~~~~~~~ad~~I~VvD~~~~~~~~~~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~S 159 (178)
||+|....+.+.....+..++|+|++.+......+..+...+.++|+||+|+.+......+.+.+.+++.+|.++++++|
T Consensus 115 dt~G~~~~~~~~~~~~~~~i~vvd~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~S 194 (221)
T 2wsm_A 115 ENVGNLICPVDFDLGENYRVVMVSVTEGDDVVEKHPEIFRVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMD 194 (221)
T ss_dssp EEEEBSSGGGGCCCSCSEEEEEEEGGGCTTHHHHCHHHHHTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECB
T ss_pred eCCCCCCCCchhccccCcEEEEEeCCCcchhhhhhhhhhhcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEee
Confidence 99994122212111357899999998765332222233566899999999996431124667777888778889999999
Q ss_pred cccCCCHHHHHHHHhhh
Q 030407 160 VGWVIGIIFTLSITHYI 176 (178)
Q Consensus 160 A~~g~gi~el~~~l~~~ 176 (178)
|++|+|+++++++|.+.
T Consensus 195 a~~g~gi~~l~~~l~~~ 211 (221)
T 2wsm_A 195 LKTGKGFEEWIDFLRGI 211 (221)
T ss_dssp TTTTBTHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 99999999999988754
No 2
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.75 E-value=4.5e-18 Score=131.92 Aligned_cols=164 Identities=32% Similarity=0.433 Sum_probs=113.9
Q ss_pred HHHHHHhhcCCcEEEEEecCCCchhHHHHHHcCCCCccceeecccCC-CcccccccccccCHhHHHhhHhhCCCCEEEEe
Q 030407 2 LALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNLFKADLLLCE 80 (178)
Q Consensus 2 ~~~~~~~~~~~~vaVI~nd~g~~iD~~li~~~~~~~~~~~~~l~~Gc-Cc~l~i~~dl~~~l~~l~~l~~~~~~d~iiiE 80 (178)
.+++..+....++++|.+||+.++|...++..|. .+..+.+|| ||-- ..|+ -+.+..+. ..++|++++|
T Consensus 56 ~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~----~~~~~~~~~~~~l~--~~~~---~~~~~~l~-~~~~d~~~id 125 (226)
T 2hf9_A 56 EKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGA----KVVPLNTGKECHLD--AHLV---GHALEDLN-LDEIDLLFIE 125 (226)
T ss_dssp HHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTC----EEEEEECTTCSSCC--HHHH---HHHHTTSC-GGGCSEEEEE
T ss_pred HHHHHHhccCCeEEEEECCCCCCccHHHHHhcCC----cEEEecCCceEecc--HHHH---HHHHHHHh-cCCCCEEEEe
Confidence 3455555445799999999998899998887665 678888898 6521 1111 13333332 3478999999
Q ss_pred CCcchhh-hcccccccceEEEEEeCCCCCCCCcCCCCCCCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEe
Q 030407 81 SGGDNLA-ANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQ 159 (178)
Q Consensus 81 ttG~~~~-~~~~~~~ad~~I~VvD~~~~~~~~~~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~S 159 (178)
++|.... ..|. ...+..+.++|+..+...+..+..++..++++|+||+|+.+......+.+.+.+++.++.++++++|
T Consensus 126 ~~g~i~~~~s~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~S 204 (226)
T 2hf9_A 126 NVGNLICPADFD-LGTHKRIVVISTTEGDDTIEKHPGIMKTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLS 204 (226)
T ss_dssp CCSCSSGGGGCC-CSCSEEEEEEEGGGCTTTTTTCHHHHTTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECC
T ss_pred CCCCccCcchhh-hccCcEEEEEecCcchhhHhhhhhHhhcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 9993222 2222 2345677889976554444334445678899999999996531124566777777778888999999
Q ss_pred cccCCCHHHHHHHHhhh
Q 030407 160 VGWVIGIIFTLSITHYI 176 (178)
Q Consensus 160 A~~g~gi~el~~~l~~~ 176 (178)
|++|+|++++++.+.+.
T Consensus 205 a~~g~gv~~l~~~l~~~ 221 (226)
T 2hf9_A 205 LKTMEGFDKVLEFIEKS 221 (226)
T ss_dssp TTTCTTHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHH
Confidence 99999999999988654
No 3
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.75 E-value=1.2e-17 Score=139.13 Aligned_cols=166 Identities=17% Similarity=0.124 Sum_probs=103.3
Q ss_pred HHHHHHhhc-CCcEEEEEecCC-Cchh------HHHHHHcCCCCccceeecccCC-CcccccccccccCH-hHHHhhHhh
Q 030407 2 LALCKFLRD-KYSLAAVTNDIF-TKED------GEFLMRNGALPEERIRAVETGG-CPHAAIREDISINL-GPLEELSNL 71 (178)
Q Consensus 2 ~~~~~~~~~-~~~vaVI~nd~g-~~iD------~~li~~~~~~~~~~~~~l~~Gc-Cc~l~i~~dl~~~l-~~l~~l~~~ 71 (178)
.+++..+.. ++|++++.+|++ ...+ ...+...+..++..++++.++| ||.+ .... ..+ .....
T Consensus 97 ~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~------~~~t~d~i-~~~~~ 169 (355)
T 3p32_A 97 EALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV------TRATRETV-VLLEA 169 (355)
T ss_dssp HHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH------HHHHHHHH-HHHHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch------hHHHHHHH-HHHhh
Confidence 355666654 599999999999 4433 3333322211234678888888 7754 2222 444 34445
Q ss_pred CCCCEEEEeCCcchhhhcccccccceEEEEEeCCCCCCCCcCCCCCCCceeEEEEecCCCCCchhHhHHH----HHHHHH
Q 030407 72 FKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAV----MERDAL 147 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~~~~~~~~ad~~I~VvD~~~~~~~~~~~~~qi~~adiiviNK~Dl~~~~~~~~~~----~~~~l~ 147 (178)
.++|++||||+|+..........+|.+++|+|+..++.........++.++++|+||+|+.+. ...+. +.+.++
T Consensus 170 ~~~~~iiiDTpGi~~~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~~~~~p~ivVlNK~Dl~~~--~~~~~~~~~l~~~l~ 247 (355)
T 3p32_A 170 AGFDVILIETVGVGQSEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEHH--KEARLAARELSAAIR 247 (355)
T ss_dssp TTCCEEEEEECSCSSHHHHHHTTCSEEEEEEESSTTCTTTTCCTTSGGGCSEEEEECCCGGGH--HHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCcHHHHHHHhCCEEEEEECCCCCccHHHHHHhHhhcCCEEEEECCCCcCh--hHHHHHHHHHHHHHh
Confidence 689999999999533222222457999999999876654333333466799999999999765 33333 333333
Q ss_pred hcCC-----CCCEEEEecccCCCHHHHHHHHhhh
Q 030407 148 RMRD-----GGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 148 ~~np-----~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
..+| ..+++++||++|+|+++|+++|.+.
T Consensus 248 ~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~ 281 (355)
T 3p32_A 248 LIYPREALWRPPVLTMSAVEGRGLAELWDTVERH 281 (355)
T ss_dssp HHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHH
T ss_pred hccccccCCCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 3332 4689999999999999999988764
No 4
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.71 E-value=5.7e-17 Score=135.03 Aligned_cols=167 Identities=16% Similarity=0.076 Sum_probs=90.5
Q ss_pred HHHHHHhhc-CCcEEEEEecCC-Cchh------HHHHHHcCCCCccceeecccCC-CcccccccccccCHhHHHhhHhhC
Q 030407 2 LALCKFLRD-KYSLAAVTNDIF-TKED------GEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELSNLF 72 (178)
Q Consensus 2 ~~~~~~~~~-~~~vaVI~nd~g-~~iD------~~li~~~~~~~~~~~~~l~~Gc-Cc~l~i~~dl~~~l~~l~~l~~~~ 72 (178)
++++..+.+ +.+++|+.+|++ ...+ ..+|+..+..+...+....++| ||..+ ....+.+..+ ...
T Consensus 92 n~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t-----r~~~~~~~~~-~~~ 165 (349)
T 2www_A 92 EYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT-----RTTNEAILLC-EGA 165 (349)
T ss_dssp HHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C-----TTHHHHHHHH-HHT
T ss_pred HHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch-----HHHHHHHHhh-ccC
Confidence 455555554 489999999999 5554 4444443321222455667778 66431 1112444333 356
Q ss_pred CCCEEEEeCCcchhhhcccccccceEEEEEeCCCCCCCCcCCCCCCCceeEEEEecCCCCCchhHh----HHHHHHHHHh
Q 030407 73 KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGAD----LAVMERDALR 148 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~~~~~~~ad~~I~VvD~~~~~~~~~~~~~qi~~adiiviNK~Dl~~~~~~~----~~~~~~~l~~ 148 (178)
++|++|+||+|...........+|.+++|+|++.+..........++.++++|+||+|+.+. .. .+.+...++.
T Consensus 166 ~~~~iliDT~Gi~~~~~~l~~~~d~vl~V~d~~~~~~~~~i~~~il~~~~ivVlNK~Dl~~~--~~~~~~~~~l~~~l~~ 243 (349)
T 2www_A 166 GYDIILIETVGVGQSEFAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVTKSDGDLI--VPARRIQAEYVSALKL 243 (349)
T ss_dssp TCSEEEEECCCC--CHHHHHTTCSEEEEEECCC------------CCSCSEEEECCCSGGGH--HHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCcchhhhhHHhhCCEEEEEEcCCcchhHHHhHHHHHhcCCEEEEeeecCCCc--hhHHHHHHHHHHHHHh
Confidence 89999999999431111112357999999999876533211123456789999999999754 32 2233333443
Q ss_pred cCC-----CCCEEEEecccCCCHHHHHHHHhhh
Q 030407 149 MRD-----GGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 149 ~np-----~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+| ..+++++||++|+|+++|+++|.+.
T Consensus 244 ~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~ 276 (349)
T 2www_A 244 LRKRSQVWKPKVIRISARSGEGISEMWDKMKDF 276 (349)
T ss_dssp CC-----CCCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cCccccCCCceEEEEecCCCCCHHHHHHHHHHH
Confidence 343 4589999999999999999998764
No 5
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.65 E-value=1.5e-17 Score=136.69 Aligned_cols=139 Identities=21% Similarity=0.318 Sum_probs=99.1
Q ss_pred cCCcEEEEEecCC-CchhHHHHHHcCCCCccceeecccCC-CcccccccccccCHhHHHhhH---hhCC--CCEEEEeCC
Q 030407 10 DKYSLAAVTNDIF-TKEDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEELS---NLFK--ADLLLCESG 82 (178)
Q Consensus 10 ~~~~vaVI~nd~g-~~iD~~li~~~~~~~~~~~~~l~~Gc-Cc~l~i~~dl~~~l~~l~~l~---~~~~--~d~iiiEtt 82 (178)
.++|+|||+||+| +.+|+..+...+ +.+.+++||| ||+. |+|+. ..+..+. +... +|++++|++
T Consensus 29 ~~~~~aVi~~d~G~i~idg~~l~~~~----~~~~el~~gCicc~~--~~~~~---~~l~~l~~~~q~~~~~~~~~v~E~~ 99 (318)
T 1nij_A 29 HGYKIAVIENEFGEVSVDDQLIGDRA----TQIKTLTNGCICCSR--SNELE---DALLDLLDNLDKGNIQFDRLVIECT 99 (318)
T ss_dssp CCCCEEEECSSCCSCCEEEEEECTTS----CEEEEETTSCEEECT--TSCHH---HHHHHHHHHHHHTSCCCSEEEEEEE
T ss_pred CCCcEEEEEecCcccCccHHHHhCCC----CCEEEECCCceEEcc--cHHHH---HHHHHHHhHHhcCCCCCCEEEEeCC
Confidence 4689999999999 999998775433 3789999999 9985 56654 3444442 3333 599999999
Q ss_pred cchh----hhcc--cc-----cccceEEEEEeCCCCCCCCcC---CCCCCCceeEEEEecCCCCCchhHhHHHHHHHHHh
Q 030407 83 GDNL----AANF--SR-----ELADYIIYIIDVSGGDKIPRK---GGPGITQADLLVINKTDLASAIGADLAVMERDALR 148 (178)
Q Consensus 83 G~~~----~~~~--~~-----~~ad~~I~VvD~~~~~~~~~~---~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~ 148 (178)
|.+. ...+ .. ...+.+++++|+.+....... ...|...||++++||.|+.++ . +.+.+.+++
T Consensus 100 ~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k~dl~de--~--~~l~~~l~~ 175 (318)
T 1nij_A 100 GMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVAGE--A--EKLHERLAR 175 (318)
T ss_dssp TTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEECTTTCSC--T--HHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEECcccCCH--H--HHHHHHHHH
Confidence 9531 1122 11 123678999999764322111 124677899999999999976 3 778888888
Q ss_pred cCCCCCEEEEecc
Q 030407 149 MRDGGPFIFAQVG 161 (178)
Q Consensus 149 ~np~a~i~~~SA~ 161 (178)
+||.++++.+|..
T Consensus 176 l~~~~~ii~~sh~ 188 (318)
T 1nij_A 176 INARAPVYTVTHG 188 (318)
T ss_dssp HCSSSCEEECCSS
T ss_pred hCCCCeEEEeccc
Confidence 9999999998853
No 6
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.48 E-value=1.1e-13 Score=114.71 Aligned_cols=168 Identities=17% Similarity=0.109 Sum_probs=89.3
Q ss_pred HHHHHhhc-CCcEEEEEecCC-CchhHHHHHHcCCCCccceeecccCC-CcccccccccccCH----hHHHhhHhhCCCC
Q 030407 3 ALCKFLRD-KYSLAAVTNDIF-TKEDGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINL----GPLEELSNLFKAD 75 (178)
Q Consensus 3 ~~~~~~~~-~~~vaVI~nd~g-~~iD~~li~~~~~~~~~~~~~l~~Gc-Cc~l~i~~dl~~~l----~~l~~l~~~~~~d 75 (178)
+++..+.+ +.+++++.+|++ +..++.++..... .+......+++ ||..+ ++-+.... +.+..+ ...+++
T Consensus 75 ~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~--~~~~~~~~~~~i~~~~~-~~~l~g~~~~~~~~~~~~-~~~~~~ 150 (341)
T 2p67_A 75 AFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTR--MNDLARAEAAFIRPVPS-SGHLGGASQRARELMLLC-EAAGYD 150 (341)
T ss_dssp HHHHHHHHTTCCEEEEEECCC-----------------CTTTTCTTEEEEEECC------CHHHHHHHHHHHH-HHTTCS
T ss_pred HHHHHHHhcCCeEEEEeecCCcCCCCcceecccch--HHhhccCCCceeecCcc-ccccchhHHHHHHHHHHh-hccCCC
Confidence 44444443 589999999999 6666555432110 01112234666 66431 11011111 222221 245899
Q ss_pred EEEEeCCcchhhhcccccccceEEEEEeCCCCCCCCcCCCCCCCceeEEEEecCCCCCchhHhHH----HHHHHHHhcCC
Q 030407 76 LLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLA----VMERDALRMRD 151 (178)
Q Consensus 76 ~iiiEttG~~~~~~~~~~~ad~~I~VvD~~~~~~~~~~~~~qi~~adiiviNK~Dl~~~~~~~~~----~~~~~l~~~np 151 (178)
++||||.|..-........+|.+++|+|++.++........+...+.++|+||+|+.+. .... .+.+.++..++
T Consensus 151 i~liDTpG~~~~~~~~~~~aD~vl~Vvd~~~~~~~~~l~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~~l~~~l~~~~~ 228 (341)
T 2p67_A 151 VVIVETVGVGQSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNH--TNVAIARHMYESALHILRR 228 (341)
T ss_dssp EEEEEEECCTTHHHHHHTTCSEEEEEECC------CCCCHHHHHHCSEEEECCCCTTCH--HHHHHHHHHHHHHHHHSCC
T ss_pred EEEEeCCCccchHHHHHHhCCEEEEEEeCCccHHHHHHHHhhhcccCEEEEECCCCCCh--HHHHHHHHHHHHHHHhccc
Confidence 99999999422111112357999999999766432211111234578999999999865 3333 33333333343
Q ss_pred -----CCCEEEEecccCCCHHHHHHHHhhh
Q 030407 152 -----GGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 152 -----~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
..+++++||++|+|+++++++|.+.
T Consensus 229 ~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~ 258 (341)
T 2p67_A 229 KYDEWQPRVLTCSALEKRGIDEIWHAIIDF 258 (341)
T ss_dssp SBTTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred cccCCCCcEEEeeCCCCCCHHHHHHHHHHH
Confidence 4589999999999999999988764
No 7
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.39 E-value=2.4e-12 Score=106.64 Aligned_cols=169 Identities=15% Similarity=0.105 Sum_probs=92.3
Q ss_pred HHHHhhc-CCcEEEEEecCC-CchhHHHH---HHcCCCCcc-ceeecccCCCcccccccccccCHhHHHhhHhhCCCCEE
Q 030407 4 LCKFLRD-KYSLAAVTNDIF-TKEDGEFL---MRNGALPEE-RIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLL 77 (178)
Q Consensus 4 ~~~~~~~-~~~vaVI~nd~g-~~iD~~li---~~~~~~~~~-~~~~l~~GcCc~l~i~~dl~~~l~~l~~l~~~~~~d~i 77 (178)
++..+.. +.+++++.+|++ ...++.+. .+.+....+ ....-....||++ ++......+++. +....++|++
T Consensus 75 l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l--~G~tr~~~e~~~-~~~~~~~~~i 151 (337)
T 2qm8_A 75 LGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTL--GGVAAKTRETML-LCEAAGFDVI 151 (337)
T ss_dssp HHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSH--HHHHHHHHHHHH-HHHHTTCCEE
T ss_pred HHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccc--cchHHHHHHHHH-HHhcCCCCEE
Confidence 3444443 489999999987 33211100 011211100 1111122336765 222222223332 2335689999
Q ss_pred EEeCCcchhhhcccccccceEEEEEeCCCCCCCCcCCCCCCCceeEEEEecCCCCCchhHh----HHHHHHHHHhcCC--
Q 030407 78 LCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGAD----LAVMERDALRMRD-- 151 (178)
Q Consensus 78 iiEttG~~~~~~~~~~~ad~~I~VvD~~~~~~~~~~~~~qi~~adiiviNK~Dl~~~~~~~----~~~~~~~l~~~np-- 151 (178)
||||+|...........+|.+++++|+..++..........+.++++++||+|+.+.. .. .+.+...+..++|
T Consensus 152 liDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivvlNK~Dl~~~~-~~s~~~~~~l~~a~~l~~~~~ 230 (337)
T 2qm8_A 152 LVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAVNKADDGDGE-RRASAAASEYRAALHILTPPS 230 (337)
T ss_dssp EEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEEEECCSTTCCH-HHHHHHHHHHHHHHTTBCCSB
T ss_pred EEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEEEEchhccCch-hHHHHHHHHHHHHHHhccccc
Confidence 9999994321111123579999999987554322111122456899999999986541 11 2333333333343
Q ss_pred ---CCCEEEEecccCCCHHHHHHHHhhh
Q 030407 152 ---GGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 152 ---~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
..+++.+||++|+|+++|++.|.+.
T Consensus 231 ~~~~~~vl~~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 231 ATWTPPVVTISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp TTBCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 4689999999999999999988764
No 8
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.33 E-value=6.9e-13 Score=104.77 Aligned_cols=161 Identities=16% Similarity=0.077 Sum_probs=92.1
Q ss_pred HHHHHHhhcCCcEEEEEecCC-Cch------------hHHHHHHcCCCCccceeecccCC-CcccccccccccCHhHHHh
Q 030407 2 LALCKFLRDKYSLAAVTNDIF-TKE------------DGEFLMRNGALPEERIRAVETGG-CPHAAIREDISINLGPLEE 67 (178)
Q Consensus 2 ~~~~~~~~~~~~vaVI~nd~g-~~i------------D~~li~~~~~~~~~~~~~l~~Gc-Cc~l~i~~dl~~~l~~l~~ 67 (178)
.+++.++..++|+++|-+|++ ... +..-+...+ ...+|| ||+.... ......+.+
T Consensus 32 ~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~---~~~~~~l~~ 100 (262)
T 1yrb_A 32 GEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREG--------YGPNGAIVESYDRL---MEKFNEYLN 100 (262)
T ss_dssp HHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTT--------CCHHHHHHHHHHHH---HTTHHHHHH
T ss_pred HHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhcc--------CCCCCcEEecHHHH---hhhHHHHHH
Confidence 345555664599999999998 443 111110001 124666 5532110 111122222
Q ss_pred hHh--hCCCCEEEEeCCcchhhhcc---------cccccceEEEEEeCCCCCCCCcCC---------CCCCCceeEEEEe
Q 030407 68 LSN--LFKADLLLCESGGDNLAANF---------SRELADYIIYIIDVSGGDKIPRKG---------GPGITQADLLVIN 127 (178)
Q Consensus 68 l~~--~~~~d~iiiEttG~~~~~~~---------~~~~ad~~I~VvD~~~~~~~~~~~---------~~qi~~adiiviN 127 (178)
..+ ..++|++||+|.|..-..+. .... +.+++++|+.......... ..+...+.++|+|
T Consensus 101 ~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~N 179 (262)
T 1yrb_A 101 KILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALN 179 (262)
T ss_dssp HHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEEC
T ss_pred HHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEe
Confidence 221 12589999999994211100 1123 7888999986543321110 1123457899999
Q ss_pred cCCCCCchhHhHHHHHHH----------------------------HHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 128 KTDLASAIGADLAVMERD----------------------------ALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 128 K~Dl~~~~~~~~~~~~~~----------------------------l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
|+|+.+. .+.+.+.+. +++.++..+++++||++|+|+++|++++.+.
T Consensus 180 K~D~~~~--~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~ 254 (262)
T 1yrb_A 180 KVDLLSE--EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH 254 (262)
T ss_dssp CGGGCCH--HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred ccccccc--ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHH
Confidence 9999876 333222222 2444566789999999999999999998764
No 9
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.97 E-value=8.5e-10 Score=89.97 Aligned_cols=102 Identities=16% Similarity=0.108 Sum_probs=70.5
Q ss_pred CCCEEEEeCCcchhhh-------------cccccccceEEEEEeCCCCCCCCcC-----CCCCCCceeEEEEecCCCC-C
Q 030407 73 KADLLLCESGGDNLAA-------------NFSRELADYIIYIIDVSGGDKIPRK-----GGPGITQADLLVINKTDLA-S 133 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~-------------~~~~~~ad~~I~VvD~~~~~~~~~~-----~~~qi~~adiiviNK~Dl~-~ 133 (178)
+..++|++|.|..-.. ......+|.+++|+|++++...... .......+.++|+||+|+. +
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~ 137 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGP 137 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSS
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCC
Confidence 6789999999941100 0011246999999999876432211 1112346789999999998 5
Q ss_pred chhHhHHHHHHHHHhcC-CCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 134 AIGADLAVMERDALRMR-DGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 134 ~~~~~~~~~~~~l~~~n-p~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
. .......+.+++.. +..+++++||++|+|++++++.+.+.
T Consensus 138 ~--~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~ 179 (308)
T 3iev_A 138 A--KNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKY 179 (308)
T ss_dssp G--GGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHh
Confidence 5 44455555555554 67899999999999999999988764
No 10
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.95 E-value=1.3e-09 Score=83.45 Aligned_cols=104 Identities=7% Similarity=-0.075 Sum_probs=69.0
Q ss_pred CCCCEEEEeCCcchh--------------hhcccc--cccceEEEEEeCCCCCCCCc-C---CCCCCCceeEEEEecCCC
Q 030407 72 FKADLLLCESGGDNL--------------AANFSR--ELADYIIYIIDVSGGDKIPR-K---GGPGITQADLLVINKTDL 131 (178)
Q Consensus 72 ~~~d~iiiEttG~~~--------------~~~~~~--~~ad~~I~VvD~~~~~~~~~-~---~~~qi~~adiiviNK~Dl 131 (178)
.+..+.|++|.|..- ...+.. ..+|.+++|+|++++..... . .......+.++|+||+|+
T Consensus 77 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl 156 (223)
T 4dhe_A 77 AEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDK 156 (223)
T ss_dssp TSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGG
T ss_pred CCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 357899999999311 111111 12578999999987533211 0 011134567999999999
Q ss_pred CCchhHhH----HHHHHHHHhc-----CCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 132 ASAIGADL----AVMERDALRM-----RDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 132 ~~~~~~~~----~~~~~~l~~~-----np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
.+. .+. +.+.+.++.. .+..+++++||++|+|+++++++|.+..
T Consensus 157 ~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 209 (223)
T 4dhe_A 157 LTR--QESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWL 209 (223)
T ss_dssp SCH--HHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CCh--hhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhc
Confidence 876 443 3344445443 3567999999999999999999987653
No 11
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.93 E-value=2.5e-09 Score=81.10 Aligned_cols=102 Identities=12% Similarity=0.043 Sum_probs=68.1
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
+..+.+++|.|.. +...+. ..+|.+++|+|+++...... .....-..+-++|+||+|+.+. ...
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~~~~~-~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~ 144 (198)
T 1f6b_A 68 GMTFTTFDLGGHIQARRVWKNYL-PAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA--ISE 144 (198)
T ss_dssp TEEEEEEEECC----CCGGGGGG-GGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC--CCH
T ss_pred CEEEEEEECCCcHhhHHHHHHHH-hcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcccc--CCH
Confidence 4678899999932 112222 25799999999987542211 0101123467999999999865 445
Q ss_pred HHHHHHHHhcC---------------CCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 140 AVMERDALRMR---------------DGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 140 ~~~~~~l~~~n---------------p~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
+++.+.++... ...+++++||++|+|+++++++|.+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 145 ERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp HHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred HHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 55666655321 345899999999999999999987654
No 12
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.86 E-value=2.2e-09 Score=79.97 Aligned_cols=103 Identities=10% Similarity=0.027 Sum_probs=67.1
Q ss_pred CCCEEEEeCCcchh--------------hhcccc--cccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCC
Q 030407 73 KADLLLCESGGDNL--------------AANFSR--ELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLA 132 (178)
Q Consensus 73 ~~d~iiiEttG~~~--------------~~~~~~--~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~ 132 (178)
+..+.+++|.|... ...+.. ..++.+++|+|++........ +......+.++|+||+|+.
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 146 (195)
T 3pqc_A 67 NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKV 146 (195)
T ss_dssp TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 45688999999311 111111 124889999998765332110 1112356789999999998
Q ss_pred CchhHhHHHHHHHHHhc---CCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 133 SAIGADLAVMERDALRM---RDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 133 ~~~~~~~~~~~~~l~~~---np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
++ .+.+...+.+++. ....+++++||++|+|++++++++.+.+
T Consensus 147 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 147 KM--SERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLL 192 (195)
T ss_dssp CG--GGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred Ch--HHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHh
Confidence 76 4444444433332 2346999999999999999999987654
No 13
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.86 E-value=8.5e-09 Score=76.91 Aligned_cols=102 Identities=13% Similarity=0.104 Sum_probs=67.7
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
+..+.+++|.|.. +...+. ..+|.+++|+|+++...... .....-..+-++|+||+|+.+. ...
T Consensus 59 ~~~~~i~Dt~G~~~~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~ 135 (187)
T 1zj6_A 59 NTRFLMWDIGGQESLRSSWNTYY-TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTV 135 (187)
T ss_dssp TEEEEEEECCC----CGGGHHHH-TTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCH
T ss_pred CEEEEEEECCCCHhHHHHHHHHh-cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCH
Confidence 4788999999941 111122 24799999999987643211 0100124567999999999875 344
Q ss_pred HHHHHHHHhc---CCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 140 AVMERDALRM---RDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 140 ~~~~~~l~~~---np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
+++.+.+... ....+++++||++|+|+++++++|.+.+
T Consensus 136 ~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 136 AEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176 (187)
T ss_dssp HHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHH
Confidence 5555554421 2345899999999999999999987643
No 14
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.85 E-value=5.6e-09 Score=78.58 Aligned_cols=101 Identities=11% Similarity=0.077 Sum_probs=67.9
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
+..+.+++|.|... ...+. ..+|.+++|+|+++...... .....-..+-++|+||+|+.+. ...
T Consensus 66 ~~~~~i~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~ 142 (190)
T 1m2o_B 66 NIKFTTFDLGGHIQARRLWKDYF-PEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA--VSE 142 (190)
T ss_dssp TEEEEEEECCCSGGGTTSGGGGC-TTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCH
T ss_pred CEEEEEEECCCCHHHHHHHHHHH-hcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCC--CCH
Confidence 46788999999421 11222 25799999999987643211 0101123467999999999875 444
Q ss_pred HHHHHHHHhcC----------CCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMR----------DGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~n----------p~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+++.+.++... ...+++++||++|+|+++++++|.+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 143 AELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp HHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred HHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 55555554321 34579999999999999999998754
No 15
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.83 E-value=3.2e-09 Score=79.56 Aligned_cols=102 Identities=15% Similarity=-0.001 Sum_probs=67.8
Q ss_pred CCCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc---C---CCCC----------CCceeEEEEecCCC
Q 030407 72 FKADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR---K---GGPG----------ITQADLLVINKTDL 131 (178)
Q Consensus 72 ~~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~---~---~~~q----------i~~adiiviNK~Dl 131 (178)
....+.|++|.|..- ...+. ..+|.+++|+|+++...... . .... -..+-++|+||+|+
T Consensus 61 ~~~~~~i~Dt~G~~~~~~~~~~~~-~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 139 (199)
T 4bas_A 61 GRVAFTVFDMGGAKKFRGLWETYY-DNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDA 139 (199)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGC-TTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHH-hcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCC
Confidence 467889999999421 11222 25799999999987643211 0 0000 14567999999999
Q ss_pred CCchhHhHHHHHHHHHh----cCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 132 ASAIGADLAVMERDALR----MRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 132 ~~~~~~~~~~~~~~l~~----~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+. ...+++.+.+.. .....+++++||++|+|++++|++|.+.
T Consensus 140 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 186 (199)
T 4bas_A 140 AGA--KTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQET 186 (199)
T ss_dssp TTC--CCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred CCC--CCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHH
Confidence 876 444444443321 1245689999999999999999988764
No 16
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.82 E-value=1.5e-08 Score=74.85 Aligned_cols=101 Identities=15% Similarity=0.135 Sum_probs=65.3
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
+..+.+++|.|.. +...+. ..+|.+++|+|+++...... .....-..+-++|+||+|+.++ ...
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~ 137 (183)
T 1moz_A 61 NLKLNVWDLGGQTSIRPYWRCYY-ADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSA 137 (183)
T ss_dssp TEEEEEEEEC----CCTTGGGTT-TTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCH
T ss_pred CEEEEEEECCCCHhHHHHHHHHh-ccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCH
Confidence 4678899999932 111111 24699999999987643211 0111234567999999999876 444
Q ss_pred HHHHHHHHhc---CCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRM---RDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~---np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+.+.+.+... ....+++++||++|+|+++++++|.+.
T Consensus 138 ~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 177 (183)
T 1moz_A 138 SEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDV 177 (183)
T ss_dssp HHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHH
T ss_pred HHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHH
Confidence 4555444321 123479999999999999999988754
No 17
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.82 E-value=1.8e-08 Score=73.48 Aligned_cols=101 Identities=14% Similarity=0.066 Sum_probs=67.1
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc---C------CCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR---K------GGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~---~------~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
+..+.+++|.|..- ...+. ..+|.+++|+|+++...... . ....-..+-++|+||+|+.+. ...
T Consensus 50 ~~~~~~~Dt~G~~~~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~ 126 (171)
T 1upt_A 50 NLKFQVWDLGGLTSIRPYWRCYY-SNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA--MTS 126 (171)
T ss_dssp TEEEEEEEECCCGGGGGGGGGGC-TTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCH
T ss_pred CEEEEEEECCCChhhhHHHHHHh-ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC--CCH
Confidence 56788999999421 11122 25799999999987643211 0 000124567999999999876 444
Q ss_pred HHHHHHHHhc---CCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRM---RDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~---np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+.+.+.+... ....+++++||++|+|++++++++.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 166 (171)
T 1upt_A 127 SEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVET 166 (171)
T ss_dssp HHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHH
Confidence 4444444311 123489999999999999999988764
No 18
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.82 E-value=9.5e-09 Score=76.37 Aligned_cols=101 Identities=14% Similarity=0.060 Sum_probs=67.7
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
+..+.+++|.|..- ...+. ..+|.+++|+|+++...... .....-..+-++|+||+|+.++ ...
T Consensus 61 ~~~~~~~Dt~G~~~~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~ 137 (186)
T 1ksh_A 61 GFKLNIWDVGGQKSLRSYWRNYF-ESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA--LSC 137 (186)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGC-TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCH
T ss_pred CEEEEEEECCCCHhHHHHHHHHh-cCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC--CCH
Confidence 57789999999421 11222 35799999999987643211 0101124567999999999876 444
Q ss_pred HHHHHHHHhc---CCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRM---RDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~---np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+.+.+.+... ....+++++||++|+|++++++++.+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 177 (186)
T 1ksh_A 138 NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDD 177 (186)
T ss_dssp HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHH
Confidence 4555444311 234589999999999999999988764
No 19
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.81 E-value=1.2e-08 Score=76.30 Aligned_cols=102 Identities=14% Similarity=0.075 Sum_probs=68.8
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---------CCCCC--CCceeEEEEecCCCCCchhH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---------KGGPG--ITQADLLVINKTDLASAIGA 137 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~q--i~~adiiviNK~Dl~~~~~~ 137 (178)
+..+.+++|.|.. +...+. ..+|.+++|+|+++...... ..... -..+-++|+||+|+.+. .
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~ 142 (190)
T 2h57_A 66 SLSFTVFDMSGQGRYRNLWEHYY-KEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--V 142 (190)
T ss_dssp SCEEEEEEECCSTTTGGGGGGGG-GGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--C
T ss_pred CEEEEEEECCCCHHHHHHHHHHH-hcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--C
Confidence 5789999999942 111222 34799999999987532111 01111 24567999999999876 4
Q ss_pred hHHHHHHHHH--hcC-CCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 138 DLAVMERDAL--RMR-DGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 138 ~~~~~~~~l~--~~n-p~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
..+.+.+.++ .+. ...+++++||++|+|+++++++|.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 143 TSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp CHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred CHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 5555665553 221 346899999999999999999987653
No 20
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.80 E-value=6.1e-09 Score=77.91 Aligned_cols=102 Identities=9% Similarity=0.036 Sum_probs=67.1
Q ss_pred CCEEEEeCCcchh--------------hhcccc--cccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCC
Q 030407 74 ADLLLCESGGDNL--------------AANFSR--ELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLAS 133 (178)
Q Consensus 74 ~d~iiiEttG~~~--------------~~~~~~--~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~ 133 (178)
..+.+++|.|... ...+.. ...|.+++|+|++++...... +......+.++|+||+|+.+
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 148 (195)
T 1svi_A 69 DELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIP 148 (195)
T ss_dssp TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred CcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 3689999999310 111111 123899999999875432211 11113456899999999987
Q ss_pred chhHhHHHHHHHHHh-c--CCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 134 AIGADLAVMERDALR-M--RDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 134 ~~~~~~~~~~~~l~~-~--np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
+ .+.+...+.+++ + .+..+++++||++|+|+++++++|.+.+
T Consensus 149 ~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 149 K--GKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp G--GGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred h--HHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 7 444443333332 2 3467999999999999999999987653
No 21
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.77 E-value=1.7e-08 Score=73.15 Aligned_cols=101 Identities=13% Similarity=0.101 Sum_probs=66.4
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc---C------CCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR---K------GGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~---~------~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
+..+.+++|.|..- ...+. ..+|.+++|+|+++...... . ....-..+-++|+||+|+.++ ...
T Consensus 43 ~~~~~i~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~ 119 (164)
T 1r8s_A 43 NISFTVWDVGGQDKIRPLWRHYF-QNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNA 119 (164)
T ss_dssp SCEEEEEECCCCGGGHHHHHHHT-TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCH
T ss_pred CEEEEEEEcCCChhhHHHHHHHh-ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCH
Confidence 57889999999421 11122 35799999999987542211 0 001124567999999999876 344
Q ss_pred HHHHHHHHhc---CCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRM---RDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~---np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+.+.+..... ....+++++||++|+|++++++++.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 159 (164)
T 1r8s_A 120 AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 159 (164)
T ss_dssp HHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHH
Confidence 4444433211 123479999999999999999998764
No 22
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.77 E-value=2.2e-08 Score=74.37 Aligned_cols=101 Identities=14% Similarity=0.096 Sum_probs=66.5
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc------CCCC---CCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR------KGGP---GITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~------~~~~---qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
+..+.+++|.|..- ...+. ..+|.+++|+|+++...... .... .-..+-++|+||+|+.+. ...
T Consensus 64 ~~~~~i~Dt~G~~~~~~~~~~~~-~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~ 140 (181)
T 2h17_A 64 NTRFLMWDIGGQESLRSSWNTYY-TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTV 140 (181)
T ss_dssp TEEEEEEEESSSGGGTCGGGGGG-TTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCH
T ss_pred CEEEEEEECCCCHhHHHHHHHHh-ccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCH
Confidence 47889999999421 11122 24799999999987643221 0001 123467999999999875 344
Q ss_pred HHHHHHHHhc---CCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRM---RDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~---np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+++.+.+... ....+++++||++|+|+++++++|.+.
T Consensus 141 ~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 141 AEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp HHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred HHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 4454444211 123489999999999999999998653
No 23
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.76 E-value=2.5e-08 Score=74.39 Aligned_cols=101 Identities=16% Similarity=0.105 Sum_probs=66.7
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
+..+.+++|.|..- ...+ ...+|.+++|+|+++...... .....-..+-++|+||+|+.++ ...
T Consensus 65 ~~~~~~~Dt~G~~~~~~~~~~~-~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~ 141 (189)
T 2x77_A 65 NISFEVWDLGGQTGVRPYWRCY-FSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA--ASE 141 (189)
T ss_dssp TEEEEEEEECCSSSSCCCCSSS-STTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC--CCH
T ss_pred CEEEEEEECCCCHhHHHHHHHH-hhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC--CCH
Confidence 56789999999321 1111 124799999999987643211 0111124567999999999876 444
Q ss_pred HHHHHHHHhc---CCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRM---RDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~---np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+++.+.+... ....+++++||++|+|++++++++.+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 181 (189)
T 2x77_A 142 AEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVER 181 (189)
T ss_dssp HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHH
Confidence 4444443311 123479999999999999999988654
No 24
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.74 E-value=1.5e-08 Score=75.73 Aligned_cols=103 Identities=17% Similarity=0.030 Sum_probs=66.9
Q ss_pred CCCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc------CCCC---CCCceeEEEEecCCCCCchhHh
Q 030407 72 FKADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR------KGGP---GITQADLLVINKTDLASAIGAD 138 (178)
Q Consensus 72 ~~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~------~~~~---qi~~adiiviNK~Dl~~~~~~~ 138 (178)
.+..+.+++|.|..- ...+. ..+|.+++|+|+++...... .... .-..+-++|+||+|+.+. ..
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~-~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~ 141 (188)
T 1zd9_A 65 GNVTIKLWDIGGQPRFRSMWERYC-RGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LD 141 (188)
T ss_dssp TTEEEEEEEECCSHHHHTTHHHHH-TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CC
T ss_pred CCEEEEEEECCCCHhHHHHHHHHH-ccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CC
Confidence 357788999999421 11122 24799999999987543211 0001 123467999999999865 33
Q ss_pred HHHHHHHHHhc---CCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 139 LAVMERDALRM---RDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 139 ~~~~~~~l~~~---np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
.+++.+.+... ....+++++||++|+|+++++++|.+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 142 EKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred HHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444433321 1345789999999999999999987653
No 25
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.74 E-value=2e-08 Score=72.89 Aligned_cols=101 Identities=13% Similarity=0.086 Sum_probs=61.5
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
.+.+.+++|.|..- ...+. ..+|.+++|+|+++...... .....-..+-++|+||+|+.++.....
T Consensus 48 ~~~~~i~D~~g~~~~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~ 126 (166)
T 3q72_A 48 EASLMVYDIWEQDGGRWLPGHCM-AMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSV 126 (166)
T ss_dssp EEEEEEEECC----------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCH
T ss_pred EEEEEEEECCCCccchhhhhhhh-hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCH
Confidence 46778999999321 11122 24799999999986532110 011112346799999999986421233
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+...+..+.. ..+++++||++|+|++++++++.+.
T Consensus 127 ~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 161 (166)
T 3q72_A 127 DEGRACAVVF--DCKFIETSAALHHNVQALFEGVVRQ 161 (166)
T ss_dssp HHHHHHHHHT--TCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCcEEEeccCCCCCHHHHHHHHHHH
Confidence 3444444443 4699999999999999999988664
No 26
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.74 E-value=2.8e-08 Score=72.99 Aligned_cols=102 Identities=14% Similarity=0.099 Sum_probs=63.2
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc--C----------CCCCCCceeEEEEecCCCCCchh
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR--K----------GGPGITQADLLVINKTDLASAIG 136 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~--~----------~~~qi~~adiiviNK~Dl~~~~~ 136 (178)
.+.+.+++|.|..- ...+. ..+|.+++|+|+++...... . ....-..+-++|+||+|+.+...
T Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 135 (182)
T 1ky3_A 57 VATMQVWDTAGQERFQSLGVAFY-RGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKK 135 (182)
T ss_dssp CEEEEEECCC----------CCS-TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGC
T ss_pred EEEEEEEECCCChHhhhhhHHHh-hcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccc
Confidence 46789999999311 11122 24799999999987532110 0 00112346799999999964310
Q ss_pred -HhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 137 -ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 137 -~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+...+..+. .+..+++++||++|+|+++++++|.+.
T Consensus 136 ~v~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 175 (182)
T 1ky3_A 136 IVSEKSAQELAKS-LGDIPLFLTSAKNAINVDTAFEEIARS 175 (182)
T ss_dssp CSCHHHHHHHHHH-TTSCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHh-cCCCeEEEEecCCCCCHHHHHHHHHHH
Confidence 123334444332 346789999999999999999988654
No 27
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.74 E-value=1.1e-08 Score=76.19 Aligned_cols=100 Identities=17% Similarity=0.061 Sum_probs=68.0
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCC--------cC----C-CCCCCceeEEEEecCCCCCch
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIP--------RK----G-GPGITQADLLVINKTDLASAI 135 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~--------~~----~-~~qi~~adiiviNK~Dl~~~~ 135 (178)
...+.+++|.|.. +...+. ..+|.+++|+|++.+.... .. . ...-..+-++|+||+|+.+.
T Consensus 73 ~~~~~i~Dt~G~~~~~~~~~~~~-~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~- 150 (198)
T 3t1o_A 73 KTRFHLYTVPGQVFYNASRKLIL-RGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA- 150 (198)
T ss_dssp EEEEEEEECCSCCSCSHHHHHHT-TTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC-
T ss_pred ceEEEEEeCCChHHHHHHHHHHH-hcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc-
Confidence 4678899999931 112222 2579999999998431100 00 0 01124467999999999877
Q ss_pred hHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 136 GADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 136 ~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+.+.+..+.. ...+++++||++|+|+++++++|.+.
T Consensus 151 -~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gv~~l~~~l~~~ 189 (198)
T 3t1o_A 151 -LPVEMVRAVVDPE-GKFPVLEAVATEGKGVFETLKEVSRL 189 (198)
T ss_dssp -CCHHHHHHHHCTT-CCSCEEECBGGGTBTHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHhc-CCceEEEEecCCCcCHHHHHHHHHHH
Confidence 5566667666643 22389999999999999999987654
No 28
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.72 E-value=2.2e-08 Score=75.44 Aligned_cols=102 Identities=12% Similarity=0.089 Sum_probs=65.1
Q ss_pred CCCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHh
Q 030407 72 FKADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGAD 138 (178)
Q Consensus 72 ~~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~ 138 (178)
.+..+.+++|.|.. +...+. ..+|.+++|+|+++...... .....-..+-++|+||+|+.+. ..
T Consensus 71 ~~~~~~i~Dt~G~~~~~~~~~~~~-~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~ 147 (192)
T 2b6h_A 71 KNICFTVWDVGGQDKIRPLWRHYF-QNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MP 147 (192)
T ss_dssp TTEEEEEEECC-----CTTHHHHH-HTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CC
T ss_pred CCEEEEEEECCCCHhHHHHHHHHh-ccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CC
Confidence 35788999999931 111111 24799999999987643211 0001124567999999999876 44
Q ss_pred HHHHHHHHHhc---CCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 139 LAVMERDALRM---RDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 139 ~~~~~~~l~~~---np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+++.+.+... ....+++++||++|+|+++++++|.+.
T Consensus 148 ~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 188 (192)
T 2b6h_A 148 VSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHE 188 (192)
T ss_dssp HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHH
Confidence 44444443321 123479999999999999999988754
No 29
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.71 E-value=1e-08 Score=79.53 Aligned_cols=100 Identities=20% Similarity=0.153 Sum_probs=67.2
Q ss_pred CCCEEEEeCCcc----hhhhcccccccceEEEEEeCCCCCCCCc---CCCC-----CCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGD----NLAANFSRELADYIIYIIDVSGGDKIPR---KGGP-----GITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~----~~~~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~-----qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
.+.+-|++|.|. ++...+.. .++++++|+|.+....... .+.. .-..+-++|.||+|+.+......+
T Consensus 61 ~v~l~iwDtaGqe~~~~l~~~~~~-~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~ 139 (216)
T 4dkx_A 61 TIRLQLWDTAGLERFRSLIPSYIR-DSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIE 139 (216)
T ss_dssp EEEEEEECCSCTTTCGGGHHHHHT-TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHH
T ss_pred EEEEEEEECCCchhhhhHHHHHhc-cccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHH
Confidence 467779999993 12233333 5799999999987532211 0000 012356899999999754213345
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
+..++.++.+ +++++|||++|+||+++|+.|.+
T Consensus 140 e~~~~a~~~~--~~~~e~SAktg~nV~e~F~~i~~ 172 (216)
T 4dkx_A 140 EGERKAKELN--VMFIETSAKAGYNVKQLFRRVAA 172 (216)
T ss_dssp HHHHHHHHHT--CEEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHhhHHHHhC--CeeEEEeCCCCcCHHHHHHHHHH
Confidence 5566666654 68999999999999999998764
No 30
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.71 E-value=4.1e-09 Score=90.18 Aligned_cols=103 Identities=16% Similarity=0.124 Sum_probs=69.0
Q ss_pred CCEEEEeCCcch--------------hhhcccccccceEEEEEeCCCCCCCCcC-CC---CCCCceeEEEEecCCCCCch
Q 030407 74 ADLLLCESGGDN--------------LAANFSRELADYIIYIIDVSGGDKIPRK-GG---PGITQADLLVINKTDLASAI 135 (178)
Q Consensus 74 ~d~iiiEttG~~--------------~~~~~~~~~ad~~I~VvD~~~~~~~~~~-~~---~qi~~adiiviNK~Dl~~~~ 135 (178)
..+.|+.|.|.. +........+|.+++|+|++++...... .. .....+-++|+||+|+.+..
T Consensus 243 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~ 322 (456)
T 4dcu_A 243 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKD 322 (456)
T ss_dssp EEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCC
T ss_pred ceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCc
Confidence 467889999931 0011112246999999999876432211 10 11245779999999998642
Q ss_pred hHhHHHHHHHHHhcC---CCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 136 GADLAVMERDALRMR---DGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 136 ~~~~~~~~~~l~~~n---p~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
....+++.+.+++.. +.++++++||++|+|++++++.+.+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~ 366 (456)
T 4dcu_A 323 ESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKA 366 (456)
T ss_dssp SSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHH
Confidence 234556666666553 36899999999999999999988654
No 31
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.71 E-value=9.8e-09 Score=76.70 Aligned_cols=101 Identities=19% Similarity=0.175 Sum_probs=65.7
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc--CCCC------CCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR--KGGP------GITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~~------qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
.+.+.|++|.|..- ...+. ..+|.+++|+|+++...... .+.. .-..+-++|+||+|+.+......+
T Consensus 64 ~~~~~i~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 142 (196)
T 3tkl_A 64 TIKLQIWDTAGQERFRTITSSYY-RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT 142 (196)
T ss_dssp EEEEEEEEECCSGGGCTTHHHHH-TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHH
T ss_pred EEEEEEEECCCcHhhhhhHHHHH-hhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHH
Confidence 36788999999321 11111 24799999999987432111 0000 013467999999999765212233
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+..+.. ..+++++||++|+|++++|++|.+.
T Consensus 143 ~~~~~~~~~--~~~~~~~Sa~~g~gv~~l~~~l~~~ 176 (196)
T 3tkl_A 143 TAKEFADSL--GIPFLETSAKNATNVEQSFMTMAAE 176 (196)
T ss_dssp HHHHHHHHT--TCCEEEECTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCcEEEEeCCCCCCHHHHHHHHHHH
Confidence 444444444 3689999999999999999987654
No 32
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.70 E-value=6.3e-08 Score=70.96 Aligned_cols=101 Identities=8% Similarity=0.042 Sum_probs=66.1
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc--C----------CCCCCCceeEEEEecCCCCCchh
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR--K----------GGPGITQADLLVINKTDLASAIG 136 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~--~----------~~~qi~~adiiviNK~Dl~~~~~ 136 (178)
.+.+.+++|.|..- ...+. ..+|.+++|+|+++...... . .......+-++|+||+|+.+..
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~- 132 (177)
T 1wms_A 55 FVTMQIWDTAGQERFRSLRTPFY-RGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ- 132 (177)
T ss_dssp EEEEEEEECCCCGGGHHHHGGGG-TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-
T ss_pred EEEEEEEeCCCchhhhhhHHHHH-hcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccc-
Confidence 36789999999421 12222 24799999999987532110 0 0001234679999999997431
Q ss_pred HhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 137 ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 137 ~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+...+..+. ....+++++||++|+|++++++++.+.
T Consensus 133 ~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 171 (177)
T 1wms_A 133 VSTEEAQAWCRD-NGDYPYFETSAKDATNVAAAFEEAVRR 171 (177)
T ss_dssp SCHHHHHHHHHH-TTCCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHh-cCCceEEEEeCCCCCCHHHHHHHHHHH
Confidence 233445555443 345799999999999999999987654
No 33
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.70 E-value=2.5e-08 Score=75.16 Aligned_cols=102 Identities=11% Similarity=0.063 Sum_probs=65.3
Q ss_pred CCCEEEEeCCcchhhhc---ccccccceEEEEEeCCCCCCCCc--CCC-------C---CCCceeEEEEecCCCCCchhH
Q 030407 73 KADLLLCESGGDNLAAN---FSRELADYIIYIIDVSGGDKIPR--KGG-------P---GITQADLLVINKTDLASAIGA 137 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~~---~~~~~ad~~I~VvD~~~~~~~~~--~~~-------~---qi~~adiiviNK~Dl~~~~~~ 137 (178)
.+.+.|++|.|..--.. .....+|.+++|+|+++...... .+. . .-..+-++|+||+|+.+.. .
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~ 134 (207)
T 1vg8_A 56 LVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-V 134 (207)
T ss_dssp EEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-S
T ss_pred EEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccc-c
Confidence 46789999999321111 11124799999999987532110 000 0 0134569999999997431 2
Q ss_pred hHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 138 DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 138 ~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
..+...++.+. ....+++++||++|+|+++++++|.+.
T Consensus 135 ~~~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 172 (207)
T 1vg8_A 135 ATKRAQAWCYS-KNNIPYFETSAKEAINVEQAFQTIARN 172 (207)
T ss_dssp CHHHHHHHHHH-TTSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CHHHHHHHHHh-cCCceEEEEeCCCCCCHHHHHHHHHHH
Confidence 23444444432 345799999999999999999988654
No 34
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.70 E-value=1.4e-08 Score=74.36 Aligned_cols=101 Identities=14% Similarity=0.052 Sum_probs=66.5
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc--CCC------CCCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~------~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
.+.+.+++|.|..- ...+. ..+|.+++|+|+++...... .+. .....+-++|+||+|+.++.....+
T Consensus 63 ~~~~~l~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 141 (179)
T 1z0f_A 63 KIKLQIWDTAGQERFRAVTRSYY-RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYE 141 (179)
T ss_dssp EEEEEEEECTTGGGTCHHHHHHH-HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHH
T ss_pred EEEEEEEECCCChHhhhhHHHHh-ccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHH
Confidence 46789999999321 11111 24699999999987532111 000 0123467999999999754212334
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+..+.. +.+++++||++|+|++++++++.+.
T Consensus 142 ~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 175 (179)
T 1z0f_A 142 EAKQFAEEN--GLLFLEASAKTGENVEDAFLEAAKK 175 (179)
T ss_dssp HHHHHHHHT--TCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 555555554 4689999999999999999987654
No 35
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.70 E-value=6.2e-09 Score=76.49 Aligned_cols=100 Identities=13% Similarity=0.079 Sum_probs=65.2
Q ss_pred CCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc--CCCCC-----CCceeEEEEecCCCCCchhHhHHHH
Q 030407 74 ADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR--KGGPG-----ITQADLLVINKTDLASAIGADLAVM 142 (178)
Q Consensus 74 ~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~~q-----i~~adiiviNK~Dl~~~~~~~~~~~ 142 (178)
+.+.+++|.|..- ...+. ..+|.+++|+|+++...... .+... -..+-++|+||+|+.+......+..
T Consensus 58 ~~~~i~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 136 (181)
T 3tw8_B 58 VKLQIWDTAGQERFRTITSTYY-RGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDA 136 (181)
T ss_dssp EEEEEEEETTGGGCSSCCGGGG-TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHH
T ss_pred EEEEEEcCCCchhhhhhHHHHh-ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHH
Confidence 6788999999321 11122 24799999999987532211 00000 1245699999999976421223444
Q ss_pred HHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 143 ERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 143 ~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+..+.. +.+++++||++|+|++++++++.+.
T Consensus 137 ~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 168 (181)
T 3tw8_B 137 YKFAGQM--GIQLFETSAKENVNVEEMFNCITEL 168 (181)
T ss_dssp HHHHHHH--TCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHc--CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4444444 3589999999999999999988764
No 36
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.70 E-value=1.5e-08 Score=76.30 Aligned_cols=101 Identities=10% Similarity=0.079 Sum_probs=67.0
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
.+.+.|++|.|.. +...+. ..+|++++|+|+++...... .+...-..+-++|+||+|+.++.....
T Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~ 139 (206)
T 2bov_A 61 EVQIDILDTAGQEDYAAIRDNYF-RSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSV 139 (206)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHH-HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCH
T ss_pred EEEEEEEcCCChhhhHHHHHHHH-hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccH
Confidence 3678899999931 111222 24699999999986432110 011112346799999999976421334
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+.+.+..+..+ .+++++||++|+|+++++++|.+.
T Consensus 140 ~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~~~ 174 (206)
T 2bov_A 140 EEAKNRAEQWN--VNYVETSAKTRANVDKVFFDLMRE 174 (206)
T ss_dssp HHHHHHHHHHT--CEEEEECTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 55666666543 589999999999999999987654
No 37
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.70 E-value=2.8e-08 Score=74.02 Aligned_cols=102 Identities=18% Similarity=0.086 Sum_probs=66.2
Q ss_pred CCCEEEEeCCcchh-h---hcccccccceEEEEEeCCCCCCCCc------CCCC---CCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDNL-A---ANFSRELADYIIYIIDVSGGDKIPR------KGGP---GITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~-~---~~~~~~~ad~~I~VvD~~~~~~~~~------~~~~---qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
+..+.+++|.|..- . ..+ ...+|.+++|+|+++...... .... .-..+-++|+||+|+.+. ...
T Consensus 59 ~~~l~i~Dt~G~~~~~~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~ 135 (181)
T 1fzq_A 59 GFKLNVWDIGGQRKIRPYWRSY-FENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA--APA 135 (181)
T ss_dssp TEEEEEEECSSCGGGHHHHHHH-HTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC--CCH
T ss_pred CEEEEEEECCCCHHHHHHHHHH-hCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccC--CCH
Confidence 56788999999421 1 111 135799999999987542211 0001 123467999999999876 344
Q ss_pred HHHHHHHHhc---CCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 140 AVMERDALRM---RDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 140 ~~~~~~l~~~---np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
+.+.+.+... ....+++++||++|+|++++++++.+.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 136 SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred HHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHH
Confidence 4444433211 1235799999999999999999987643
No 38
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.69 E-value=8e-09 Score=74.74 Aligned_cols=101 Identities=10% Similarity=0.075 Sum_probs=66.1
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
.+.+.+++|.|.. +...+. ..+|.+++|+|+++...... .....-..+-++|+||+|+.++.....
T Consensus 51 ~~~~~l~D~~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~ 129 (168)
T 1u8z_A 51 EVQIDILDTAGQEDYAAIRDNYF-RSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSV 129 (168)
T ss_dssp EEEEEEEECCC---CHHHHHHHH-HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCH
T ss_pred EEEEEEEECCCcchhHHHHHHHh-hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCH
Confidence 4678899999932 112222 24699999999986432110 000112346799999999975421234
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+...+..+..+ .+++++||++|+|++++++++.+.
T Consensus 130 ~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (168)
T 1u8z_A 130 EEAKNRADQWN--VNYVETSAKTRANVDKVFFDLMRE 164 (168)
T ss_dssp HHHHHHHHHHT--CEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcC--CeEEEeCCCCCCCHHHHHHHHHHH
Confidence 45555665543 589999999999999999988654
No 39
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.69 E-value=6.4e-09 Score=78.10 Aligned_cols=102 Identities=15% Similarity=0.074 Sum_probs=67.5
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc--CCCC------CCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR--KGGP------GITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~~------qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
.+.+.|++|.|..- ...+. ..+|.+++|+|+++...... .+.. .-..+-++|+||+|+.++.....+
T Consensus 71 ~~~~~i~Dt~G~~~~~~~~~~~~-~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~ 149 (192)
T 2fg5_A 71 LHKFLIWDTAGQERFHSLAPMYY-RGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLK 149 (192)
T ss_dssp EEEEEEEEECCSGGGGGGTHHHH-TTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHH
T ss_pred EEEEEEEcCCCchhhHhhhHHhh-ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHH
Confidence 46789999999321 11111 24699999999987542211 0000 013467999999999753112345
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
...+..+.. +.+++++||++|+|+++++++|.+.+
T Consensus 150 ~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 150 DAKEYAESI--GAIVVETSAKNAINIEELFQGISRQI 184 (192)
T ss_dssp HHHHHHHTT--TCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred HHHHHHHHc--CCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 566666554 36899999999999999999987653
No 40
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.69 E-value=1.6e-08 Score=73.37 Aligned_cols=102 Identities=11% Similarity=0.012 Sum_probs=66.0
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
++.+.+++|.|.. +...+. ..+|.+++|+|+++...... .....-..+-++|+||+|+.++.....
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~ 128 (167)
T 1c1y_A 50 QCMLEILDTAGTEQFTAMRDLYM-KNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGK 128 (167)
T ss_dssp EEEEEEEEECSSCSSTTHHHHHH-HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCH
T ss_pred EEEEEEEECCChHHHHHHHHHHh-ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCH
Confidence 4678899999931 111122 24699999999986432110 000112345699999999975411223
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+...+..+.. +..+++++||++|+|+++++++|.+.
T Consensus 129 ~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (167)
T 1c1y_A 129 EQGQNLARQW-CNCAFLESSAKSKINVNEIFYDLVRQ 164 (167)
T ss_dssp HHHHHHHHHT-TSCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHc-cCCcEEEecCCCCCCHHHHHHHHHHH
Confidence 4445544443 45789999999999999999998764
No 41
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.69 E-value=2.7e-08 Score=72.75 Aligned_cols=101 Identities=11% Similarity=0.031 Sum_probs=61.9
Q ss_pred CCCEEEEeCCcchh------hhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhH
Q 030407 73 KADLLLCESGGDNL------AANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGA 137 (178)
Q Consensus 73 ~~d~iiiEttG~~~------~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~ 137 (178)
.+.+.+++|.|..- ...+ ...+|.+++|+|+++...... .....-..+-++|+||+|+.+....
T Consensus 51 ~~~~~~~D~~g~~~~~~~~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v 129 (175)
T 2nzj_A 51 DTTLVVVDTWEAEKLDKSWSQESC-LQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREV 129 (175)
T ss_dssp EEEEEEECCC-------CHHHHHT-TTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCS
T ss_pred EEEEEEEecCCCCccchhhhHHhh-cccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcccccc
Confidence 45788999999421 1111 124699999999986432110 0111113467999999999764112
Q ss_pred hHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 138 DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 138 ~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
..+......+.. +.+++++||++|+|+++++++|.+.
T Consensus 130 ~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~~ 166 (175)
T 2nzj_A 130 SVEEGRACAVVF--DCKFIETSATLQHNVAELFEGVVRQ 166 (175)
T ss_dssp CHHHHHHHHHHH--TSEEEECBTTTTBSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc--CCeEEEEecCCCCCHHHHHHHHHHH
Confidence 233344444443 3589999999999999999988654
No 42
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.69 E-value=2.7e-08 Score=73.72 Aligned_cols=101 Identities=15% Similarity=0.130 Sum_probs=66.2
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc--C-------CCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR--K-------GGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~--~-------~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
.+.+.+++|.|..- ...+. ..+|.+++|+|+++...... . ....-..+-++|+||+|+.++.....
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~ 147 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFF-RDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKE 147 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTT-TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHH-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCH
Confidence 46789999999421 11122 25799999999987532211 0 01112346799999999976311223
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+.+.+..+.. +.+++++||++|+|+++++++|.+.
T Consensus 148 ~~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l~~~ 182 (195)
T 3bc1_A 148 EEARELAEKY--GIPYFETSAANGTNISHAIEMLLDL 182 (195)
T ss_dssp HHHHHHHHHH--TCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4455555544 3589999999999999999988654
No 43
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.69 E-value=1.5e-08 Score=74.46 Aligned_cols=102 Identities=12% Similarity=0.142 Sum_probs=63.7
Q ss_pred CCCEEEEeCCcchh-hhc--ccccccceEEEEEeCCCCCCCCc----CCCCCCCceeEEEEecCCCCCchhHhHHHHHHH
Q 030407 73 KADLLLCESGGDNL-AAN--FSRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGADLAVMERD 145 (178)
Q Consensus 73 ~~d~iiiEttG~~~-~~~--~~~~~ad~~I~VvD~~~~~~~~~----~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~ 145 (178)
+..+.+++|.|..- ... .....+|.+++|+|++++..... ........+-++|+||+|+.+. ..+.+...
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~---~~~~~~~~ 130 (178)
T 2lkc_A 54 DKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEA---NPDRVMQE 130 (178)
T ss_dssp TEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCS---CHHHHHHH
T ss_pred CceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcC---CHHHHHHH
Confidence 35677899999311 111 11124689999999877432111 0001124467999999999865 22333444
Q ss_pred HHhcCC-------CCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 146 ALRMRD-------GGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 146 l~~~np-------~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
+++... ..+++++||++|+|+++++++|.+.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 131 LMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVS 169 (178)
T ss_dssp HTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred HHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhh
Confidence 433221 24899999999999999999987653
No 44
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.68 E-value=1.2e-08 Score=82.99 Aligned_cols=101 Identities=9% Similarity=-0.041 Sum_probs=68.0
Q ss_pred CCCCEEEEeCCcchh---------hh--cccccccceEEEEEeCCCCCCCCcC-C---CCCC--CceeEEEEecCCCCCc
Q 030407 72 FKADLLLCESGGDNL---------AA--NFSRELADYIIYIIDVSGGDKIPRK-G---GPGI--TQADLLVINKTDLASA 134 (178)
Q Consensus 72 ~~~d~iiiEttG~~~---------~~--~~~~~~ad~~I~VvD~~~~~~~~~~-~---~~qi--~~adiiviNK~Dl~~~ 134 (178)
.+..++|++|.|..- .. ......+|.+++|+|++++...... . .... ..+.++|+||+|+.++
T Consensus 53 ~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 53 GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKY 132 (301)
T ss_dssp TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSS
T ss_pred CCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCc
Confidence 357899999999421 10 0112357999999999876432211 0 0112 4568999999999876
Q ss_pred hhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 135 IGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 135 ~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.. + +.+.++++.+..+++++||++|.|++++++.+.+.
T Consensus 133 --~~-~-~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~ 170 (301)
T 1wf3_A 133 --PE-E-AMKAYHELLPEAEPRMLSALDERQVAELKADLLAL 170 (301)
T ss_dssp --HH-H-HHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTT
T ss_pred --hH-H-HHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHh
Confidence 33 0 23344444566789999999999999999998754
No 45
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.68 E-value=6.3e-09 Score=79.26 Aligned_cols=102 Identities=16% Similarity=0.115 Sum_probs=63.3
Q ss_pred CCCEEEEeCCcch-----hhhcccccccceEEEEEeCCCCCCCCc----CC--------CCCCCceeEEEEecCCCCCch
Q 030407 73 KADLLLCESGGDN-----LAANFSRELADYIIYIIDVSGGDKIPR----KG--------GPGITQADLLVINKTDLASAI 135 (178)
Q Consensus 73 ~~d~iiiEttG~~-----~~~~~~~~~ad~~I~VvD~~~~~~~~~----~~--------~~qi~~adiiviNK~Dl~~~~ 135 (178)
+..+.+++|.|.. +...+. ..+|.+++|+|+++...... .+ ......+-++|+||+|+.+.
T Consensus 53 ~~~~~i~Dt~G~~~~~~~~~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~- 130 (214)
T 2fh5_B 53 GNSLTLIDLPGHESLRFQLLDRFK-SSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA- 130 (214)
T ss_dssp CCEEEEEECCCCHHHHHHHHHHHG-GGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC-
T ss_pred ccEEEEEECCCChhHHHHHHHHHH-hhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc-
Confidence 5779999999942 112222 35799999999976321100 00 01123567999999999865
Q ss_pred hHhHHHHHHHHHh------------------------cCC-------------CCCEEEEecccC------CCHHHHHHH
Q 030407 136 GADLAVMERDALR------------------------MRD-------------GGPFIFAQVGWV------IGIIFTLSI 172 (178)
Q Consensus 136 ~~~~~~~~~~l~~------------------------~np-------------~a~i~~~SA~~g------~gi~el~~~ 172 (178)
...+...+.+++ ... ..+++++||++| +||+++|++
T Consensus 131 -~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~ 209 (214)
T 2fh5_B 131 -KSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKW 209 (214)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHH
T ss_pred -ccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHH
Confidence 333333333221 111 457999999999 999999999
Q ss_pred Hhhhh
Q 030407 173 THYIV 177 (178)
Q Consensus 173 l~~~~ 177 (178)
|.+.+
T Consensus 210 l~~~~ 214 (214)
T 2fh5_B 210 LAKIA 214 (214)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 97753
No 46
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.68 E-value=3.2e-08 Score=72.77 Aligned_cols=101 Identities=17% Similarity=0.133 Sum_probs=64.9
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCC------CCCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~------~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
.+.+.+++|.|.. +...+. ..+|.+++|+|+++...... .+. ..-..+-++|+||+|+.++.....+
T Consensus 59 ~~~~~~~Dt~G~~~~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~ 137 (180)
T 2g6b_A 59 KVKLQMWDTAGQERFRSVTHAYY-RDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKRE 137 (180)
T ss_dssp EEEEEEEECCCC--------CCG-GGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHc-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHH
Confidence 4678899999932 111122 24699999999987532111 000 0123467999999999864212233
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+..+.. +.+++++||++|+|++++++++.+.
T Consensus 138 ~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 171 (180)
T 2g6b_A 138 DGEKLAKEY--GLPFMETSAKTGLNVDLAFTAIAKE 171 (180)
T ss_dssp HHHHHHHHH--TCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 444444444 3589999999999999999988654
No 47
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.67 E-value=3e-08 Score=75.04 Aligned_cols=101 Identities=18% Similarity=0.091 Sum_probs=65.5
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc--CCC------CCCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~------~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
.+.+.|++|.|..- ...+. ..+|.+++|+|+++...... .+. ..-..+-++|+||+|+.++.....+
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~-~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~ 134 (206)
T 2bcg_Y 56 TVKLQIWDTAGQERFRTITSSYY-RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYD 134 (206)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGG-TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHH
T ss_pred EEEEEEEeCCChHHHHHHHHHhc-cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHH
Confidence 46789999999321 11122 24799999999987532111 000 0113456999999999864112234
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+..+.. +.+++++||++|+|+++++++|.+.
T Consensus 135 ~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~~ 168 (206)
T 2bcg_Y 135 VAKEFADAN--KMPFLETSALDSTNVEDAFLTMARQ 168 (206)
T ss_dssp HHHHHHHHT--TCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 444444443 3689999999999999999987654
No 48
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.67 E-value=1.2e-08 Score=74.22 Aligned_cols=101 Identities=16% Similarity=0.114 Sum_probs=65.5
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCCCC------CCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGGPG------ITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~~q------i~~adiiviNK~Dl~~~~~~~~~ 140 (178)
.+.+.+++|.|.. +...+. ..+|.+++|+|+++...... .+... -..+-++|+||+|+.++.....+
T Consensus 54 ~~~l~i~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 132 (170)
T 1z08_A 54 RVNLAIWDTAGQERFHALGPIYY-RDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQ 132 (170)
T ss_dssp EEEEEEEECCCC-------CCSS-TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHH
T ss_pred EEEEEEEECCCcHhhhhhHHHHh-ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHH
Confidence 4678899999932 111122 24699999999987532111 00000 13456999999999764112344
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+..+.. +.+++++||++|+|+++++++|.+.
T Consensus 133 ~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 166 (170)
T 1z08_A 133 EAESYAESV--GAKHYHTSAKQNKGIEELFLDLCKR 166 (170)
T ss_dssp HHHHHHHHT--TCEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHH
Confidence 555555554 3689999999999999999988654
No 49
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.66 E-value=1.2e-08 Score=75.36 Aligned_cols=101 Identities=10% Similarity=0.079 Sum_probs=66.8
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
.+.+.|++|.|.. +...+. ..+|.+++|+|+++...... .+...-..+-++|+||+|+.++.....
T Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~ 143 (187)
T 2a9k_A 65 EVQIDILDTAGQEDYAAIRDNYF-RSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSV 143 (187)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHH-HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCH
T ss_pred EEEEEEEECCCCcccHHHHHHHh-ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCH
Confidence 3678899999932 111222 24699999999986432110 011112345699999999976421334
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+.+.+..+.. ..+++++||++|+|+++++++|.+.
T Consensus 144 ~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 178 (187)
T 2a9k_A 144 EEAKNRAEQW--NVNYVETSAKTRANVDKVFFDLMRE 178 (187)
T ss_dssp HHHHHHHHHT--TCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCeEEEeCCCCCCCHHHHHHHHHHH
Confidence 5566666654 3589999999999999999988654
No 50
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.66 E-value=2.8e-08 Score=73.17 Aligned_cols=102 Identities=17% Similarity=0.063 Sum_probs=66.5
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc--CCC------CCCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~------~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
.+.+.|++|.|..- ...+ ...+|.+++|+|+++...... .+. ..-..+-++|+||+|+.++.....+
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~ 138 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLAPMY-YRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAE 138 (181)
T ss_dssp EEEEEEEECCCSGGGGGGTHHH-HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHH
T ss_pred EEEEEEEeCCCChhhhhhhHHH-hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHH
Confidence 46789999999321 1111 124799999999976532111 000 0113457999999999754212334
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
.+.+..+.. ..+++++||++|+|+++++++|.+.+
T Consensus 139 ~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 139 DAQTYAQEN--GLFFMETSAKTATNVKEIFYEIARRL 173 (181)
T ss_dssp HHHHHHHHT--TCEEEECCSSSCTTHHHHHHHHHHTC
T ss_pred HHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 555555543 46899999999999999999987643
No 51
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.66 E-value=2.2e-08 Score=77.35 Aligned_cols=104 Identities=11% Similarity=0.017 Sum_probs=65.0
Q ss_pred CCCEEEEeCCcchh----hh--------cccccccceEEEEEeCCCCCCCCc----C----CCCC-CCceeEEEEecCCC
Q 030407 73 KADLLLCESGGDNL----AA--------NFSRELADYIIYIIDVSGGDKIPR----K----GGPG-ITQADLLVINKTDL 131 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~--------~~~~~~ad~~I~VvD~~~~~~~~~----~----~~~q-i~~adiiviNK~Dl 131 (178)
+..+.|++|.|..- .. ......+|++++|+|+++...... . .... -..+-++|+||+|+
T Consensus 75 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl 154 (228)
T 2qu8_A 75 LNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDK 154 (228)
T ss_dssp TEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGG
T ss_pred CCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCccc
Confidence 46789999999410 00 001224689999999987644321 0 0011 14567999999999
Q ss_pred CCchh---HhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 132 ASAIG---ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 132 ~~~~~---~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+... ...+.+.+..+..++..+++++||++|+|+++++++|.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (228)
T 2qu8_A 155 CNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACEL 202 (228)
T ss_dssp CC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHH
Confidence 76410 1112334444444344689999999999999999987654
No 52
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.66 E-value=8.7e-08 Score=72.98 Aligned_cols=101 Identities=16% Similarity=0.139 Sum_probs=66.1
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc------CCCCC---CCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR------KGGPG---ITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~------~~~~q---i~~adiiviNK~Dl~~~~~~~~ 139 (178)
.+.+.|++|.|.. +...+. ..+|.+++|+|+++...... ..... -..+-++|+||+|+.+......
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~-~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~ 161 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFF-RDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNE 161 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHH-TTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCH
T ss_pred eEEEEEEECCCcHhHHhHHHHHh-cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCH
Confidence 4678999999931 111122 35799999999987532110 01111 2346799999999975311223
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+...+..+.. ..+++++||++|+|+++++++|.+.
T Consensus 162 ~~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~~ 196 (217)
T 2f7s_A 162 RQARELADKY--GIPYFETSAATGQNVEKAVETLLDL 196 (217)
T ss_dssp HHHHHHHHHT--TCCEEEEBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHHHHC--CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4455555544 3589999999999999999988654
No 53
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.66 E-value=2.6e-08 Score=73.65 Aligned_cols=101 Identities=14% Similarity=0.117 Sum_probs=58.3
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCCC------CCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGGP------GITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~~------qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
.+.+.|++|.|.. +...+. ..+|.+++|+|+++...... .+.. .-..+-++|+||+|+.++.....+
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~ 134 (183)
T 2fu5_C 56 RIKLQIWDTAGQERFRTITTAYY-RGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKE 134 (183)
T ss_dssp EEEEEEEEC---------CCTTT-TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHH
T ss_pred EEEEEEEcCCCChhhhhhHHHHH-hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHH
Confidence 3678899999931 111122 24799999999987532111 0000 113467999999999764112234
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+..+.. +.+++++||++|+|+++++++|.+.
T Consensus 135 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~ 168 (183)
T 2fu5_C 135 RGEKLALDY--GIKFMETSAKANINVENAFFTLARD 168 (183)
T ss_dssp HHHHHHHHH--TCEEEECCC---CCHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 455555554 3589999999999999999988654
No 54
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.65 E-value=4.2e-08 Score=80.59 Aligned_cols=102 Identities=14% Similarity=0.123 Sum_probs=66.1
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---C------CCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---K------GGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---~------~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
+..+.|++|.|.. +...+. ..+|.+|+|+|+++...... . ....-..+-++|+||+|+.+. ...
T Consensus 208 ~~~l~i~Dt~G~~~~~~~~~~~~-~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~--~~~ 284 (329)
T 3o47_A 208 NISFTVWDVGGQDKIRPLWRHYF-QNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNA 284 (329)
T ss_dssp TEEEEEEECC-----CCSHHHHH-TTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCH
T ss_pred cEEEEEEECCCCHhHHHHHHHHh-ccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcc--cCH
Confidence 5678899999931 111111 24699999999986543211 0 000113467999999999876 455
Q ss_pred HHHHHHHHhcC---CCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 140 AVMERDALRMR---DGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 140 ~~~~~~l~~~n---p~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
+.+...+.... ...+++++||++|+||+++|+.|.+.+
T Consensus 285 ~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l 325 (329)
T 3o47_A 285 AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 325 (329)
T ss_dssp HHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 55555554221 345799999999999999999887643
No 55
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.65 E-value=5.8e-08 Score=72.28 Aligned_cols=100 Identities=20% Similarity=0.128 Sum_probs=65.5
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
.+.+.|++|.|..- ...+. ..+|.+++|+|+++...... .+...-..+-++|+||+|+.+.. ...
T Consensus 63 ~~~~~i~Dt~G~~~~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-~~~ 140 (195)
T 1x3s_A 63 KAKLAIWDTAGQERFRTLTPSYY-RGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE-VDR 140 (195)
T ss_dssp EEEEEEEEECSSGGGCCSHHHHH-TTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-SCH
T ss_pred EEEEEEEeCCCchhhhhhhHHHh-ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccc-cCH
Confidence 46789999999321 11111 24799999999987532110 11111234669999999996431 223
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+...+..+.. ..+++++||++|+|+++++++|.+.
T Consensus 141 ~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 175 (195)
T 1x3s_A 141 NEGLKFARKH--SMLFIEASAKTCDGVQCAFEELVEK 175 (195)
T ss_dssp HHHHHHHHHT--TCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCEEEEecCCCCCCHHHHHHHHHHH
Confidence 4455555544 4689999999999999999987653
No 56
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.64 E-value=5.7e-08 Score=83.60 Aligned_cols=103 Identities=14% Similarity=0.067 Sum_probs=67.2
Q ss_pred CCCEEEEeCCcchh-hh--cccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDNL-AA--NFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~~-~~--~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
+..+.|++|.|..- .. ......+|.+|+|+|+++...... .....-..+-++|+||+|+.+. ...+
T Consensus 365 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~ 442 (497)
T 3lvq_E 365 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPH 442 (497)
T ss_dssp SCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC--CCHH
T ss_pred CEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC--CCHH
Confidence 56788999999311 11 111235799999999987543211 0001123467999999999876 4444
Q ss_pred HHHHHHHhc---CCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 141 VMERDALRM---RDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 141 ~~~~~l~~~---np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
.+.+.+... ....+++++||++|+||++++++|.+.+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 482 (497)
T 3lvq_E 443 EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 482 (497)
T ss_dssp HHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 554444321 1234799999999999999999987654
No 57
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.64 E-value=4.3e-08 Score=73.13 Aligned_cols=101 Identities=15% Similarity=0.080 Sum_probs=65.6
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCCC------CCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGGP------GITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~~------qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
...+.+++|.|.. +...+. ..+|.+++|+|+++...... .+.. .-..+-++|+||+|+.++.....+
T Consensus 70 ~~~~~l~Dt~G~~~~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~ 148 (189)
T 2gf9_A 70 RIKLQIWDTAGQERYRTITTAYY-RGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAE 148 (189)
T ss_dssp EEEEEEEECCSCCSSCCSGGGGG-TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHH
T ss_pred EEEEEEEeCCCcHHHhhhHHHhc-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHH
Confidence 4678899999931 111222 24799999999976532111 0000 013467999999999754112234
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+..+..+ .+++++||++|+|+++++++|.+.
T Consensus 149 ~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~~~ 182 (189)
T 2gf9_A 149 DGRRLADDLG--FEFFEASAKENINVKQVFERLVDV 182 (189)
T ss_dssp HHHHHHHHHT--CEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CeEEEEECCCCCCHHHHHHHHHHH
Confidence 4455555443 589999999999999999988654
No 58
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.64 E-value=3.2e-08 Score=72.04 Aligned_cols=102 Identities=16% Similarity=0.097 Sum_probs=64.4
Q ss_pred CCCEEEEeCCcchhhhc-cc---ccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDNLAAN-FS---RELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~~-~~---~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
.+.+.+++|.|..-... .. ...+|.+++|+|+++...... .....-..+-++|+||+|+.+......
T Consensus 50 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~ 129 (169)
T 3q85_A 50 EVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSL 129 (169)
T ss_dssp EEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCH
T ss_pred EEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCH
Confidence 46778999999421111 11 123699999999987432111 001111356799999999974321233
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+...+..+.. ..+++++||++|+|++++|+.+.+.
T Consensus 130 ~~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l~~~ 164 (169)
T 3q85_A 130 EEGRHLAGTL--SCKHIETSAALHHNTRELFEGAVRQ 164 (169)
T ss_dssp HHHHHHHHHT--TCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCcEEEecCccCCCHHHHHHHHHHH
Confidence 4455555544 4599999999999999999987654
No 59
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.64 E-value=4.3e-08 Score=72.45 Aligned_cols=100 Identities=15% Similarity=0.095 Sum_probs=64.7
Q ss_pred CCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhHH
Q 030407 74 ADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 74 ~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
+.+-+++|.|..- ...+. ..+|.+++|+|+++...... .....-..+-++|+||+|+.+......+
T Consensus 66 ~~l~i~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~ 144 (183)
T 3kkq_A 66 AILDVLDTAGQEEFSAMREQYM-RTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRD 144 (183)
T ss_dssp EEEEEEECCSCGGGCSSHHHHH-HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHH
T ss_pred EEEEEEECCCchhhHHHHHHHH-hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHH
Confidence 4455699999321 11111 23699999999987532110 0001123456999999999763213344
Q ss_pred HHHHHHHhcCCCCCEEEEecc-cCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVG-WVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~-~g~gi~el~~~l~~~ 176 (178)
...+..+..+ .+++++||+ +|+|++++|+.|.+.
T Consensus 145 ~~~~~~~~~~--~~~~~~Sa~~~~~~v~~l~~~l~~~ 179 (183)
T 3kkq_A 145 QGKEMATKYN--IPYIETSAKDPPLNVDKTFHDLVRV 179 (183)
T ss_dssp HHHHHHHHHT--CCEEEEBCSSSCBSHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CeEEEeccCCCCCCHHHHHHHHHHH
Confidence 5555555554 689999999 999999999988764
No 60
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.63 E-value=2e-08 Score=75.86 Aligned_cols=101 Identities=15% Similarity=0.048 Sum_probs=65.0
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
.+.+.|++|.|..- ...+. ..+|.+++|+|+++...... .....-..+-++|+||+|+.++.....
T Consensus 71 ~~~~~l~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~ 149 (201)
T 3oes_A 71 EFHLHLVDTAGQDEYSILPYSFI-IGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQA 149 (201)
T ss_dssp CEEEEEEEECCCCTTCCCCGGGT-TTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCH
T ss_pred EEEEEEEECCCccchHHHHHHHH-hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCH
Confidence 57788999999321 11222 24799999999986432110 011112346799999999975421223
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+...+..+.. +.+++++||++|+|++++|+.|.+.
T Consensus 150 ~~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l~~~ 184 (201)
T 3oes_A 150 VEGKKLAESW--GATFMESSARENQLTQGIFTKVIQE 184 (201)
T ss_dssp HHHHHHHHHH--TCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 3444444544 3589999999999999999987654
No 61
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.63 E-value=3.5e-08 Score=85.16 Aligned_cols=100 Identities=21% Similarity=0.061 Sum_probs=62.0
Q ss_pred CCCCEEEEeCCcchh----hh------cc-cccccceEEEEEeCCCCCCCC----c-CC-CCCCCceeEEEEecCCCCCc
Q 030407 72 FKADLLLCESGGDNL----AA------NF-SRELADYIIYIIDVSGGDKIP----R-KG-GPGITQADLLVINKTDLASA 134 (178)
Q Consensus 72 ~~~d~iiiEttG~~~----~~------~~-~~~~ad~~I~VvD~~~~~~~~----~-~~-~~qi~~adiiviNK~Dl~~~ 134 (178)
.+..+.|++|.|..- .. +. ....+|.+++|+|++++.... . .+ ...-..+.++|+||+|+.+.
T Consensus 279 ~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 279 DKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAAN 358 (476)
T ss_dssp TTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTT
T ss_pred CCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCc
Confidence 356799999999411 00 01 123479999999998875431 0 00 00114578999999999877
Q ss_pred hhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 135 IGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 135 ~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+. +.+.+. +..+++++||++|+|+++++++|.+.
T Consensus 359 --~~~~~--~~l~~~-~~~~~i~vSAktg~GI~eL~~~i~~~ 395 (476)
T 3gee_A 359 --ADALI--RAIADG-TGTEVIGISALNGDGIDTLKQHMGDL 395 (476)
T ss_dssp --THHHH--HHHHHH-HTSCEEECBTTTTBSHHHHHHHHTHH
T ss_pred --cchhH--HHHHhc-CCCceEEEEECCCCCHHHHHHHHHHH
Confidence 33322 223322 12589999999999999999998764
No 62
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.63 E-value=2.3e-08 Score=74.50 Aligned_cols=99 Identities=16% Similarity=0.099 Sum_probs=65.6
Q ss_pred CCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc--CCCC----CCCceeEEEEecCCCCCchhHhHHHHH
Q 030407 74 ADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR--KGGP----GITQADLLVINKTDLASAIGADLAVME 143 (178)
Q Consensus 74 ~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~~----qi~~adiiviNK~Dl~~~~~~~~~~~~ 143 (178)
..+.|++|.|..- ...+. ..+|.+++|+|++++..... .+.. ....+-++|+||+|+... ....+.+.
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~-~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~-~~~~~~~~ 170 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYY-RGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKF-QVDILEVQ 170 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHH-TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-C-CSCHHHHH
T ss_pred eEEEEEECCCcHHHHHHHHHHh-cCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccc-cCCHHHHH
Confidence 6889999999311 11111 24799999999987532211 0000 012567999999994321 13445666
Q ss_pred HHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 144 RDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 144 ~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+.++.. ..+++++||++|+|+++++++|.+.
T Consensus 171 ~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~ 201 (208)
T 3clv_A 171 KYAQDN--NLLFIQTSAKTGTNIKNIFYMLAEE 201 (208)
T ss_dssp HHHHHT--TCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred HHHHHc--CCcEEEEecCCCCCHHHHHHHHHHH
Confidence 666654 3599999999999999999988654
No 63
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.63 E-value=2.7e-08 Score=72.24 Aligned_cols=101 Identities=12% Similarity=-0.007 Sum_probs=64.5
Q ss_pred CCCEEEEeCCcchhh----hcccccccceEEEEEeCCCCCCCCc--CCC------CCCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDNLA----ANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~~~----~~~~~~~ad~~I~VvD~~~~~~~~~--~~~------~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
.+.+.+++|.|..-- ..+. ..+|.+++|+|+++...... .+. ..-..+-++|+||+|+.++.....+
T Consensus 54 ~~~~~~~Dt~G~~~~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~ 132 (170)
T 1z0j_A 54 LHKFLIWDTAGLERFRALAPMYY-RGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMER 132 (170)
T ss_dssp EEEEEEEEECCSGGGGGGTHHHH-TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHH
T ss_pred EEEEEEEcCCCchhhhcccHhhC-cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHH
Confidence 467889999994211 1111 24699999999987532111 000 0113356888999999764111233
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
......+.. ..+++++||++|+|+++++++|.+.
T Consensus 133 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~i~~~ 166 (170)
T 1z0j_A 133 DAKDYADSI--HAIFVETSAKNAININELFIEISRR 166 (170)
T ss_dssp HHHHHHHHT--TCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCEEEEEeCCCCcCHHHHHHHHHHH
Confidence 444444443 3689999999999999999988764
No 64
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.63 E-value=7.4e-09 Score=75.17 Aligned_cols=101 Identities=15% Similarity=0.071 Sum_probs=65.8
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc--CCCCC-----CCceeEEEEecCCCCCchhHhHHH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR--KGGPG-----ITQADLLVINKTDLASAIGADLAV 141 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~~q-----i~~adiiviNK~Dl~~~~~~~~~~ 141 (178)
.+.+.+++|.|..- ...+. ..+|.+++|+|+++...... .+... -..+-++|+||+|+.++.....+.
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~ 131 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEFDAITKAYY-RGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEE 131 (168)
T ss_dssp EEEEEEECCTTGGGTTCCCHHHH-TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHH
T ss_pred EEEEEEEcCCCcHhHHHHHHHHh-cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHH
Confidence 46889999999321 11111 24799999999987532111 01001 134679999999997631122344
Q ss_pred HHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 142 MERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 142 ~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
..+..+.. +.+++++||++|+|+++++++|.+.
T Consensus 132 ~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~ 164 (168)
T 1z2a_A 132 AEGLAKRL--KLRFYRTSVKEDLNVSEVFKYLAEK 164 (168)
T ss_dssp HHHHHHHH--TCEEEECBTTTTBSSHHHHHHHHHH
T ss_pred HHHHHHHc--CCeEEEEecCCCCCHHHHHHHHHHH
Confidence 55555544 3589999999999999999988653
No 65
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.62 E-value=2.2e-08 Score=73.99 Aligned_cols=101 Identities=14% Similarity=0.013 Sum_probs=65.4
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
.+.+.+++|.|..- ...+. ..+|.+++|+|+++...... .....-..+-++|+||+|+.++.....
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~ 131 (181)
T 3t5g_A 53 EYHLQLVDTAGQDEYSIFPQTYS-IDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISY 131 (181)
T ss_dssp EEEEEEEECCCCCTTCCCCGGGT-TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCH
T ss_pred EEEEEEEeCCCchhhhHHHHHHH-hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecH
Confidence 36778999999321 11222 24799999999986432111 011112346799999999965421234
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+...+..+.. +.+++++||++|+|++++|+.+.+.
T Consensus 132 ~~~~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l~~~ 166 (181)
T 3t5g_A 132 EEGKALAESW--NAAFLESSAKENQTAVDVFRRIILE 166 (181)
T ss_dssp HHHHHHHHHT--TCEEEECCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCcEEEEecCCCCCHHHHHHHHHHH
Confidence 4555555554 4589999999999999999987654
No 66
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.62 E-value=5.9e-08 Score=72.53 Aligned_cols=101 Identities=14% Similarity=0.065 Sum_probs=65.3
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--C------CCCCCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--K------GGPGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~------~~~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
...+.|++|.|.. +...+. ..+|.+++|+|++....... . ....-..+-++|+||+|+.+......+
T Consensus 73 ~~~~~i~Dt~G~~~~~~~~~~~~-~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~ 151 (193)
T 2oil_A 73 AVKAQIWDTAGLERYRAITSAYY-RGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTE 151 (193)
T ss_dssp EEEEEEEEESCCCTTCTTHHHHH-TTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHH
T ss_pred EEEEEEEeCCCchhhhhhhHHHh-ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHH
Confidence 4678899999931 111122 24699999999987532110 0 001124467999999999754112234
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+..+.. +.+++++||++|+|+++++++|.+.
T Consensus 152 ~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 185 (193)
T 2oil_A 152 EARMFAENN--GLLFLETSALDSTNVELAFETVLKE 185 (193)
T ss_dssp HHHHHHHHT--TCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 455555443 4689999999999999999987653
No 67
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.62 E-value=3.1e-08 Score=73.34 Aligned_cols=100 Identities=12% Similarity=0.014 Sum_probs=65.2
Q ss_pred CCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc--CC------CCCCCceeEEEEecCCCCCchhHhHHH
Q 030407 74 ADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR--KG------GPGITQADLLVINKTDLASAIGADLAV 141 (178)
Q Consensus 74 ~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~--~~------~~qi~~adiiviNK~Dl~~~~~~~~~~ 141 (178)
+.+.+++|.|..- ...+. ..+|.+++|+|+++...... .+ ...-..+-++|+||+|+.++.....+.
T Consensus 59 ~~~~l~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 137 (186)
T 2bme_A 59 VKLQIWDTAGQERFRSVTRSYY-RGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLE 137 (186)
T ss_dssp EEEEEEEECCSGGGHHHHHTTS-TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHH
T ss_pred EEEEEEeCCCcHHHHHHHHHHH-hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHH
Confidence 6788999999421 11222 24799999999987532111 00 001234679999999996531122344
Q ss_pred HHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 142 MERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 142 ~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
..+..+.. ..+++++||++|+|++++++++.+.
T Consensus 138 ~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 170 (186)
T 2bme_A 138 ASRFAQEN--ELMFLETSALTGENVEEAFVQCARK 170 (186)
T ss_dssp HHHHHHHT--TCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHc--CCEEEEecCCCCCCHHHHHHHHHHH
Confidence 45555443 4689999999999999999987653
No 68
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.62 E-value=3.2e-08 Score=85.41 Aligned_cols=102 Identities=14% Similarity=0.118 Sum_probs=67.0
Q ss_pred CCCEEEEeCCcch-hhh-cc-cccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCchhHhHHHH---
Q 030407 73 KADLLLCESGGDN-LAA-NF-SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVM--- 142 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~~-~~-~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~~~~~~~~--- 142 (178)
+..+.|++|.|.. ... .. ....+|.+++|+|++++...+.. .......+.++++||+|+.++ +..+..
T Consensus 72 ~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~--~~~~~~~~~ 149 (482)
T 1wb1_A 72 NYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGT--EEIKRTEMI 149 (482)
T ss_dssp TEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCH--HHHHHHHHH
T ss_pred CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccc--hhHHHHHHH
Confidence 4678999999931 011 11 11247999999999876432110 111233455999999999876 444433
Q ss_pred -HHHHHhc--CCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 143 -ERDALRM--RDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 143 -~~~l~~~--np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+.++.. .+..+++++||++|+|+++|+++|.+.
T Consensus 150 l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~ 186 (482)
T 1wb1_A 150 MKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITT 186 (482)
T ss_dssp HHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHh
Confidence 3444332 235799999999999999999998764
No 69
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.62 E-value=3.4e-08 Score=73.95 Aligned_cols=101 Identities=15% Similarity=0.073 Sum_probs=64.8
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc--CCC------CCCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~------~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
.+.+.|++|.|..- ...+. ..+|.+++|+|+++...... .+. ..-..+-++|+||+|+.+......+
T Consensus 69 ~~~~~i~Dt~G~~~~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~ 147 (191)
T 2a5j_A 69 QIKLQIWDTAGQESFRSITRSYY-RGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKRE 147 (191)
T ss_dssp EEEEEEECCTTGGGTSCCCHHHH-TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHH
T ss_pred EEEEEEEECCCchhhhhhHHHHh-ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHH
Confidence 46788999999321 11111 24799999999987432111 000 0113456999999999753112234
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+..+.. ..+++++||++|+|++++|++|.+.
T Consensus 148 ~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 181 (191)
T 2a5j_A 148 EGEAFAREH--GLIFMETSAKTACNVEEAFINTAKE 181 (191)
T ss_dssp HHHHHHHHH--TCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 445555544 3589999999999999999987653
No 70
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.62 E-value=2e-08 Score=75.46 Aligned_cols=102 Identities=19% Similarity=0.079 Sum_probs=65.7
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc--CCC------CCCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~------~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
.+.+.+++|.|..- ...+. ..+|.+++|+|+++...... .+. ..-..+-++|+||+|+.+......+
T Consensus 74 ~~~l~l~Dt~G~~~~~~~~~~~~-~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~ 152 (192)
T 2il1_A 74 KIRLQIWDTAGQERFNSITSAYY-RSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQ 152 (192)
T ss_dssp EEEEEEEEECCSGGGHHHHHHHH-HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHh-cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHH
Confidence 46789999999321 11111 24699999999987542211 000 0113467999999999754112233
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+..+.. ...+++++||++|+|+++++++|.+.
T Consensus 153 ~~~~~~~~~-~~~~~~~~SA~~g~gi~~l~~~l~~~ 187 (192)
T 2il1_A 153 QGEKFAQQI-TGMRFCEASAKDNFNVDEIFLKLVDD 187 (192)
T ss_dssp HHHHHHHTS-TTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 444444432 35689999999999999999988654
No 71
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.61 E-value=3.5e-08 Score=71.56 Aligned_cols=102 Identities=15% Similarity=0.090 Sum_probs=65.2
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc--CC-C-----CCCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR--KG-G-----PGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~--~~-~-----~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
++.+.+++|.|..- ...+ ...+|.+++|+|+++...... .+ . ..-..+-++|+||+|+.++.....+
T Consensus 54 ~~~~~~~D~~G~~~~~~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~ 132 (170)
T 1r2q_A 54 TVKFEIWDTAGQERYHSLAPMY-YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ 132 (170)
T ss_dssp EEEEEEEEECCSGGGGGGHHHH-HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHH
T ss_pred EEEEEEEeCCCcHHhhhhhHHh-ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHH
Confidence 46788999999321 1111 124799999999987532111 00 0 0113456788899999754112234
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
...+..+.. ..+++++||++|+|+++++++|.+.+
T Consensus 133 ~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 133 EAQSYADDN--SLLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp HHHHHHHHT--TCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred HHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 455555443 46899999999999999999987643
No 72
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.60 E-value=3.5e-08 Score=74.77 Aligned_cols=102 Identities=17% Similarity=0.085 Sum_probs=65.6
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCCC------CCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGGP------GITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~~------qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
.+.+.|++|.|.. +...+. ..+|.+++|+|+++...... .+.. .-..+-++|+||+|+.+......+
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~-~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~ 155 (201)
T 2hup_A 77 RVKLQIWDTAGQERFRTITQSYY-RSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLA 155 (201)
T ss_dssp EEEEEEECCTTCGGGHHHHHHHH-TTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHH
T ss_pred EEEEEEEECCCcHhHHHHHHHHH-hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHH
Confidence 3678899999942 111222 25799999999976432111 0000 123456999999999753112334
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+.+..+.. ...+++++||++|+|+++++++|.+.
T Consensus 156 ~~~~~~~~~-~~~~~~~~SA~~g~gi~~l~~~l~~~ 190 (201)
T 2hup_A 156 EAQSLAEHY-DILCAIETSAKDSSNVEEAFLRVATE 190 (201)
T ss_dssp HHHHHHHHT-TCSEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 555555544 22389999999999999999987654
No 73
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.60 E-value=2.3e-08 Score=72.21 Aligned_cols=101 Identities=14% Similarity=0.044 Sum_probs=64.7
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
++.+.+++|.|.. +...+. ..+|.+++|+|+++...... .....-..+-++|+||+|+.++.....
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~ 128 (167)
T 1kao_A 50 PSVLEILDTAGTEQFASMRDLYI-KNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSS 128 (167)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHH-HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCH
T ss_pred EEEEEEEECCCchhhHHHHHHHh-ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCH
Confidence 3568899999931 111121 24699999999987432110 011112346799999999975411223
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+...+..+.. +.+++++||++|+|+++++++|.+.
T Consensus 129 ~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 163 (167)
T 1kao_A 129 SEGRALAEEW--GCPFMETSAKSKTMVDELFAEIVRQ 163 (167)
T ss_dssp HHHHHHHHHH--TSCEEEECTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCEEEecCCCCcCHHHHHHHHHHH
Confidence 3444444444 3589999999999999999988654
No 74
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.60 E-value=5.3e-08 Score=70.09 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=64.9
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--C-------CCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--K-------GGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~-------~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
.+++.+++|.|.. +...+. ..+|.+++++|+++...... . ....-..+-++|+||+|+.+.. ...
T Consensus 50 ~~~~~~~D~~G~~~~~~~~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~-~~~ 127 (166)
T 2ce2_X 50 TCLLDILDTAGQEEYSAMRDQYM-RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAART-VES 127 (166)
T ss_dssp EEEEEEEECCCCSSCCHHHHHHH-HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-SCH
T ss_pred EEEEEEEECCCchhhhHHHHHhh-ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcc-cCH
Confidence 4678899999932 111121 24699999999976432110 0 0011134679999999998631 223
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+...+..++. ..+++++||++|+|++++++++.+.
T Consensus 128 ~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 162 (166)
T 2ce2_X 128 RQAQDLARSY--GIPYIETSAKTRQGVEDAFYTLVRE 162 (166)
T ss_dssp HHHHHHHHHH--TCCEEEECTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHH
Confidence 4444444444 3589999999999999999988654
No 75
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.60 E-value=4.8e-08 Score=82.30 Aligned_cols=101 Identities=16% Similarity=0.108 Sum_probs=65.5
Q ss_pred CCEEEEeCCcchh-h-hcc-cccccceEEEEEeCCCCCCCCc--CCC---CCCC-ceeEEEEecCCCCCchhHhHHHHHH
Q 030407 74 ADLLLCESGGDNL-A-ANF-SRELADYIIYIIDVSGGDKIPR--KGG---PGIT-QADLLVINKTDLASAIGADLAVMER 144 (178)
Q Consensus 74 ~d~iiiEttG~~~-~-~~~-~~~~ad~~I~VvD~~~~~~~~~--~~~---~qi~-~adiiviNK~Dl~~~~~~~~~~~~~ 144 (178)
..+.|++|.|-.- . .+. ....+|.+++|+|+.++..... .+. ..+. .+-++++||+|+.++ .+.+...+
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~--~~~~~~~~ 152 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSK--EEALSQYR 152 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH--HHHHHHHH
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccch--HHHHHHHH
Confidence 5789999999310 1 110 1124699999999988652211 010 0111 245899999999987 44443333
Q ss_pred HHHh----cC-CCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 145 DALR----MR-DGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 145 ~l~~----~n-p~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+++ .. ...+++++||++|+|+++|++.|.+.
T Consensus 153 ~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~ 189 (403)
T 3sjy_A 153 QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEY 189 (403)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHh
Confidence 3332 22 35799999999999999999998763
No 76
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.60 E-value=4.9e-08 Score=70.89 Aligned_cols=100 Identities=19% Similarity=0.134 Sum_probs=64.2
Q ss_pred CCCEEEEeCCcchhh----hcccccccceEEEEEeCCCCCCCCc--CCC------CCCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDNLA----ANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~~~----~~~~~~~ad~~I~VvD~~~~~~~~~--~~~------~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
.+.+.+++|.|..-- ..+. ..+|.+++|+|+++...... .+. ..-..+-++|+||+|+.+.. ...+
T Consensus 51 ~~~~~l~D~~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~~~~ 128 (170)
T 1g16_A 51 KVKLQIWDTAGQERFRTITTAYY-RGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV-VTAD 128 (170)
T ss_dssp EEEEEEECCTTGGGTSCCCHHHH-TTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCC-SCHH
T ss_pred EEEEEEEeCCCChhhhhhHHHHh-ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCc-cCHH
Confidence 467889999993211 1111 24689999999986532111 000 00134679999999995431 2233
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+..++. +.+++++||++|+|++++++++.+.
T Consensus 129 ~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~l~~~ 162 (170)
T 1g16_A 129 QGEALAKEL--GIPFIESSAKNDDNVNEIFFTLAKL 162 (170)
T ss_dssp HHHHHHHHH--TCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 444444444 3589999999999999999988654
No 77
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.59 E-value=7.9e-08 Score=71.07 Aligned_cols=100 Identities=16% Similarity=0.136 Sum_probs=64.2
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
.+.+.+++|.|.. +...+. ..+|.+++|+|+++...... .+...-..+-++|+||+|+.+.. ...
T Consensus 51 ~~~~~i~Dt~G~~~~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~~~ 128 (189)
T 4dsu_A 51 TCLLDILDTAGQEEYSAMRDQYM-RTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRT-VDT 128 (189)
T ss_dssp EEEEEEEECCCC---CTTHHHHH-HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCS-SCH
T ss_pred EEEEEEEECCCcHHHHHHHHHHH-hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccc-cCH
Confidence 3557789999932 111121 24699999999986432110 01111234679999999997541 223
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+...+..+.. ..+++++||++|+|+++++++|.+.
T Consensus 129 ~~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~~ 163 (189)
T 4dsu_A 129 KQAQDLARSY--GIPFIETSAKTRQGVDDAFYTLVRE 163 (189)
T ss_dssp HHHHHHHHHH--TCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 3444444444 3589999999999999999988654
No 78
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.59 E-value=3.5e-08 Score=71.72 Aligned_cols=102 Identities=12% Similarity=0.037 Sum_probs=64.5
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CC--------CCCCCceeEEEEecCCCCCchhHh
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KG--------GPGITQADLLVINKTDLASAIGAD 138 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~--------~~qi~~adiiviNK~Dl~~~~~~~ 138 (178)
.+.+.+++|.|.. +...+. ..+|.+++|+|+++...... .+ ...-..+-++|+||+|+.++....
T Consensus 50 ~~~~~~~Dt~G~~~~~~~~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~ 128 (172)
T 2erx_A 50 ICTLQITDTTGSHQFPAMQRLSI-SKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQ 128 (172)
T ss_dssp EEEEEEEECCSCSSCHHHHHHHH-HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSC
T ss_pred EEEEEEEECCCchhhHHHHHHhc-ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccC
Confidence 4678999999942 111122 24699999999986432111 00 000134679999999997541112
Q ss_pred HHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 139 LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 139 ~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
.+......+.. ..+++++||++|+|+++++++|.+.+
T Consensus 129 ~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 129 SSEAEALARTW--KCAFMETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp HHHHHHHHHHH--TCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred HHHHHHHHHHh--CCeEEEecCCCCcCHHHHHHHHHHHH
Confidence 23334444433 35899999999999999999987654
No 79
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.58 E-value=5.6e-08 Score=73.20 Aligned_cols=101 Identities=16% Similarity=0.067 Sum_probs=66.1
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCCC------CCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGGP------GITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~~------qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
.+.+.|++|.|.. +...+. ..+|.+++|+|+++...... .+.. .-..+-++|+||+|+.+......+
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~ 134 (203)
T 1zbd_A 56 RIKLQIWDTAGLERYRTITTAYY-RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSE 134 (203)
T ss_dssp EEEEEEEEECCSGGGHHHHHTTG-GGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHH
T ss_pred EEEEEEEECCCchhhcchHHHhh-cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHH
Confidence 4678899999942 111222 24799999999987532110 0000 123467999999999764212234
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+..+..+ .+++++||++|+|+++++++|.+.
T Consensus 135 ~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~ 168 (203)
T 1zbd_A 135 RGRQLADHLG--FEFFEASAKDNINVKQTFERLVDV 168 (203)
T ss_dssp HHHHHHHHHT--CEEEECBTTTTBSSHHHHHHHHHH
T ss_pred HHHHHHHHCC--CeEEEEECCCCCCHHHHHHHHHHH
Confidence 4455555443 589999999999999999987654
No 80
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.58 E-value=4.9e-08 Score=84.38 Aligned_cols=99 Identities=14% Similarity=0.063 Sum_probs=64.8
Q ss_pred CCCEEEEeCCcch-hhh----------c-ccccccceEEEEEeCCCCCCCCcC-CCCCC-CceeEEEEecCCCCCchhHh
Q 030407 73 KADLLLCESGGDN-LAA----------N-FSRELADYIIYIIDVSGGDKIPRK-GGPGI-TQADLLVINKTDLASAIGAD 138 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~~----------~-~~~~~ad~~I~VvD~~~~~~~~~~-~~~qi-~~adiiviNK~Dl~~~~~~~ 138 (178)
+..+.|++|.|.. ... . .....+|.+++|+|++++...... ..+.+ ..+.++|+||+|+.++ ..
T Consensus 290 g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~--~~ 367 (482)
T 1xzp_A 290 GILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEK--IN 367 (482)
T ss_dssp TEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCC--CC
T ss_pred CeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccc--cC
Confidence 4678999999943 110 0 011246999999999876432110 00001 3467999999999765 33
Q ss_pred HHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 139 LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 139 ~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+.+.+.. ....+++++||++|+|+++++++|.+.
T Consensus 368 ~~~~~~~~---~~~~~~i~iSAktg~Gi~eL~~~l~~~ 402 (482)
T 1xzp_A 368 EEEIKNKL---GTDRHMVKISALKGEGLEKLEESIYRE 402 (482)
T ss_dssp HHHHHHHH---TCSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred HHHHHHHh---cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34444332 223689999999999999999988764
No 81
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.57 E-value=3.9e-08 Score=74.41 Aligned_cols=101 Identities=12% Similarity=0.012 Sum_probs=65.2
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc--CCC------CCCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~------~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
.+.+.|++|.|..- ...+. ..+|++++|+|+++...... .+. ..-..+-++|+||+|+.++.....+
T Consensus 73 ~~~l~l~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~ 151 (200)
T 2o52_A 73 TVKLQIWDTAGQERFRSVTRSYY-RGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFL 151 (200)
T ss_dssp EEEEEEECCTTHHHHSCCCHHHH-TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHH
T ss_pred eeEEEEEcCCCcHhHHHHHHHHh-ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHH
Confidence 36789999999321 11111 24799999999987532111 000 0123467999999999753112234
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+..+..+.. ..+++++||++|+|+++++++|.+.
T Consensus 152 ~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~l~~~ 185 (200)
T 2o52_A 152 EASRFAQEN--ELMFLETSALTGENVEEAFLKCART 185 (200)
T ss_dssp HHHHHHHHT--TCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 444555443 4689999999999999999987653
No 82
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.57 E-value=3.9e-08 Score=72.00 Aligned_cols=101 Identities=18% Similarity=0.134 Sum_probs=65.2
Q ss_pred CCCEEEEeCCcchh-h---hcccccccceEEEEEeCCCCCCCCc--CCCC------CCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDNL-A---ANFSRELADYIIYIIDVSGGDKIPR--KGGP------GITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~~-~---~~~~~~~ad~~I~VvD~~~~~~~~~--~~~~------qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
.+.+.+++|.|..- . ..+. ..+|.+++|+|+++...... .+.. .-..+-++|+||+|+.++.....+
T Consensus 62 ~~~~~~~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~ 140 (179)
T 2y8e_A 62 TVRLQLWDTAGQERFRSLIPSYI-RDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE 140 (179)
T ss_dssp EEEEEEEEECCSGGGGGGSHHHH-HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHH
T ss_pred EEEEEEEECCCcHHHHHHHHHHh-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHH
Confidence 35789999999321 1 1111 24699999999976432111 0000 013456999999999754112234
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
......+.. ..+++++||++|+|+++++++|.+.
T Consensus 141 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~ 174 (179)
T 2y8e_A 141 EGERKAKEL--NVMFIETSAKAGYNVKQLFRRVAAA 174 (179)
T ss_dssp HHHHHHHHH--TCEEEEEBTTTTBSHHHHHHHHHHT
T ss_pred HHHHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 445555544 3589999999999999999998764
No 83
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.57 E-value=3.3e-08 Score=74.00 Aligned_cols=102 Identities=15% Similarity=0.076 Sum_probs=65.4
Q ss_pred CCCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCCC------CCCceeEEEEecCCCCCchhHhH
Q 030407 72 FKADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGGP------GITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 72 ~~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~~------qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
..+.+.|++|.|.. +...+. ..+|.+++|+|+++...... .+.. .-..+-++|+||+|+.+......
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~ 148 (191)
T 3dz8_A 70 KRVKLQIWDTAGQERYRTITTAYY-RGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPT 148 (191)
T ss_dssp TTEEEEEECHHHHHHCHHHHHHHH-TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH
T ss_pred EEEEEEEEeCCChHHHHHHHHHHH-ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH
Confidence 35678999999932 111122 25799999999986432110 0000 01345699999999965421223
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+......+.. +.+++++||++|+|++++|+++.+.
T Consensus 149 ~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 183 (191)
T 3dz8_A 149 EKGQLLAEQL--GFDFFEASAKENISVRQAFERLVDA 183 (191)
T ss_dssp HHHHHHHHHH--TCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444444444 3589999999999999999987654
No 84
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.57 E-value=7.6e-08 Score=73.28 Aligned_cols=101 Identities=14% Similarity=0.057 Sum_probs=64.3
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCC------CCCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~------~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
.+.+.|++|.|.. +...+. ..+|.+++|+|+++...... .+. ..-..+-++|+||+|+.+......+
T Consensus 74 ~~~l~l~Dt~G~~~~~~~~~~~~-~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~ 152 (201)
T 2ew1_A 74 KVKLQIWDTAGQERFRSITQSYY-RSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQ 152 (201)
T ss_dssp EEEEEEEEECCSGGGHHHHGGGS-TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHH
T ss_pred EEEEEEEECCCcHHHHHHHHHHH-hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHH
Confidence 3578899999942 111222 35799999999986532110 000 0113456899999999753112233
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+..+.. ..+++++||++|+|++++|+++.+.
T Consensus 153 ~~~~~~~~~--~~~~~~~Sa~~g~gv~~l~~~l~~~ 186 (201)
T 2ew1_A 153 RAEEFSEAQ--DMYYLETSAKESDNVEKLFLDLACR 186 (201)
T ss_dssp HHHHHHHHH--TCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 444444433 3589999999999999999987653
No 85
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.56 E-value=3.3e-08 Score=72.56 Aligned_cols=100 Identities=16% Similarity=0.077 Sum_probs=63.9
Q ss_pred CCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCCCCC--------Cce-eEEEEecCCCCCchhHh
Q 030407 74 ADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGGPGI--------TQA-DLLVINKTDLASAIGAD 138 (178)
Q Consensus 74 ~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~~qi--------~~a-diiviNK~Dl~~~~~~~ 138 (178)
+.+.+++|.|.. +...+. ..+|.+++|+|+++...... .+...+ ..+ -++|+||+|+.+.....
T Consensus 56 ~~~~~~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~ 134 (178)
T 2hxs_A 56 VTLQIWDIGGQTIGGKMLDKYI-YGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIK 134 (178)
T ss_dssp EEEEEEECTTCCTTCTTHHHHH-TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSC
T ss_pred EEEEEEECCCCccccchhhHHH-hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccC
Confidence 678899999932 111222 24799999999987543211 000001 223 47899999997531122
Q ss_pred HHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 139 LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 139 ~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+...+..+.. +.+++++||++|+|+++++++|.+.
T Consensus 135 ~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 170 (178)
T 2hxs_A 135 PEKHLRFCQEN--GFSSHFVSAKTGDSVFLCFQKVAAE 170 (178)
T ss_dssp HHHHHHHHHHH--TCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCcEEEEeCCCCCCHHHHHHHHHHH
Confidence 34444455544 3589999999999999999988654
No 86
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.55 E-value=5.9e-08 Score=73.97 Aligned_cols=101 Identities=10% Similarity=-0.027 Sum_probs=62.8
Q ss_pred CCEEEEeCCcchhhhcc---cccccceEEEEEeCCCCCCCCc--CCCCC------CCceeEEEEecCCCCCchhHhHHHH
Q 030407 74 ADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIPR--KGGPG------ITQADLLVINKTDLASAIGADLAVM 142 (178)
Q Consensus 74 ~d~iiiEttG~~~~~~~---~~~~ad~~I~VvD~~~~~~~~~--~~~~q------i~~adiiviNK~Dl~~~~~~~~~~~ 142 (178)
+.+.+++|.|..-.... ....+|.+++|+|+++...... .+... -..+-++|+||+|+.+......+..
T Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 140 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLV 140 (218)
T ss_dssp EEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHH
T ss_pred EEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHH
Confidence 67899999993211111 1124799999999987532211 00000 1346799999999976511222333
Q ss_pred HHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 143 ERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 143 ~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+..+. ...+++++||++|+|+++++++|.+.
T Consensus 141 ~~~~~~--~~~~~~~~Sa~~g~gv~~l~~~l~~~ 172 (218)
T 4djt_A 141 MEVLKG--KNYEYFEISAKTAHNFGLPFLHLARI 172 (218)
T ss_dssp HHHTTT--CCCEEEEEBTTTTBTTTHHHHHHHHH
T ss_pred HHHHHH--cCCcEEEEecCCCCCHHHHHHHHHHH
Confidence 333332 35689999999999999999988764
No 87
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.55 E-value=1.8e-08 Score=74.02 Aligned_cols=101 Identities=12% Similarity=0.041 Sum_probs=64.0
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc--C-------CCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR--K-------GGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~--~-------~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
.+.+.+++|.|..- ...+. ..+|.+++|+|+++...... . ....-..+-++|+||+|+.+......
T Consensus 56 ~~~~~~~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~ 134 (181)
T 2fn4_A 56 PARLDILDTAGQEEFGAMREQYM-RAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPR 134 (181)
T ss_dssp EEEEEEEECCCTTTTSCCHHHHH-HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCH
T ss_pred EEEEEEEECCCchhhHHHHHHHH-hhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCH
Confidence 36788999999321 11111 23699999999987432110 0 00112345699999999976411122
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+......+.. ..+++++||++|+|+++++++|.+.
T Consensus 135 ~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~l~~~ 169 (181)
T 2fn4_A 135 SEASAFGASH--HVAYFEASAKLRLNVDEAFEQLVRA 169 (181)
T ss_dssp HHHHHHHHHT--TCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHH
Confidence 3344444433 5689999999999999999988654
No 88
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.54 E-value=4.5e-08 Score=74.35 Aligned_cols=101 Identities=15% Similarity=0.033 Sum_probs=64.7
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc---CCCCC-----CCceeEEEEecCCCCCchhHh--
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIGAD-- 138 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~q-----i~~adiiviNK~Dl~~~~~~~-- 138 (178)
.+.+.|++|.|..- ...+. ..+|.+++|+|+++...... .+... -..+-++|+||+|+.+. ..
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~ 153 (204)
T 4gzl_A 77 PVNLGLWDTAGLEDYDRLRPLSY-PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD--KDTI 153 (204)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGC-TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTC--HHHH
T ss_pred EEEEEEEECCCchhhHHHHHHHh-ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccc--hhhh
Confidence 45677999999421 11122 25799999999987532211 11000 13467999999999765 22
Q ss_pred ------------HHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 139 ------------LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 139 ------------~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
.+...+..+.. ...+++++||++|+|++++++++.+.+
T Consensus 154 ~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 154 EKLKEKKLTPITYPQGLAMAKEI-GAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHT-TCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred hhhhccccccccHHHHHHHHHhc-CCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 12233333333 335799999999999999999987643
No 89
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.54 E-value=1.5e-07 Score=70.36 Aligned_cols=101 Identities=9% Similarity=0.064 Sum_probs=64.3
Q ss_pred CCCEEEEeCCcchhhhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCC--chhHhHHH
Q 030407 73 KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLAS--AIGADLAV 141 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~--~~~~~~~~ 141 (178)
.+.+-+++|.|..--. + ...+|.+++|+|+++...... .+...-..+-++|.||+|+.+ ......+.
T Consensus 66 ~~~l~i~Dt~G~~~~~-~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~ 143 (184)
T 3ihw_A 66 SYLLLIRDEGGPPELQ-F-AAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSR 143 (184)
T ss_dssp EEEEEEEECSSSCCHH-H-HHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHH
T ss_pred EEEEEEEECCCChhhh-e-ecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHH
Confidence 3567779999931111 2 224799999999987532211 011112345699999999942 11122344
Q ss_pred HHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 142 MERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 142 ~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
..+..+.. ...+++++||++|+|++++|+++.+.
T Consensus 144 ~~~~~~~~-~~~~~~e~Sa~~~~gv~~lf~~l~~~ 177 (184)
T 3ihw_A 144 ARKLSTDL-KRCTYYETCATYGLNVERVFQDVAQK 177 (184)
T ss_dssp HHHHHHHT-TTCEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 55555544 34689999999999999999987654
No 90
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.54 E-value=6.2e-08 Score=78.65 Aligned_cols=79 Identities=19% Similarity=0.078 Sum_probs=53.8
Q ss_pred ccceEEEEEeCCCCCCCCc---CCC---CCCCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHH
Q 030407 94 LADYIIYIIDVSGGDKIPR---KGG---PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII 167 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~---~~~---~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~ 167 (178)
.+|.+++|+|+++...... .+. ..-..+-++|+||+||.++ .+.++..++.+..+...+++++||++|+|++
T Consensus 84 ~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~--~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~ 161 (301)
T 1u0l_A 84 NVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDE--DDLRKVRELEEIYSGLYPIVKTSAKTGMGIE 161 (301)
T ss_dssp SCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH--HHHHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred cCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCc--hhHHHHHHHHHHHhhhCcEEEEECCCCcCHH
Confidence 5799999999987542111 111 0123467999999999876 4433344444443321689999999999999
Q ss_pred HHHHHHh
Q 030407 168 FTLSITH 174 (178)
Q Consensus 168 el~~~l~ 174 (178)
++|+.+.
T Consensus 162 ~lf~~l~ 168 (301)
T 1u0l_A 162 ELKEYLK 168 (301)
T ss_dssp HHHHHHS
T ss_pred HHHHHhc
Confidence 9998875
No 91
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.54 E-value=1.2e-07 Score=70.61 Aligned_cols=100 Identities=14% Similarity=0.080 Sum_probs=64.1
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc--C-------CCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR--K-------GGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~--~-------~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
.+++.|++|.|..- ...+. ..+|.+++|+|++....... . +...-..+-++|+||+|+.+.. ...
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-~~~ 145 (190)
T 3con_A 68 TCLLDILDTAGQEEYSAMRDQYM-RTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRT-VDT 145 (190)
T ss_dssp EEEEEEEECCC-----------C-TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-SCH
T ss_pred EEEEEEEECCChHHHHHHHHHhh-CcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCccc-CCH
Confidence 46789999999321 11122 24799999999976532111 0 0011134569999999997631 233
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+.+.+..+..+ .+++++||++|+|+++++++|.+.
T Consensus 146 ~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~ 180 (190)
T 3con_A 146 KQAHELAKSYG--IPFIETSAKTRQGVEDAFYTLVRE 180 (190)
T ss_dssp HHHHHHHHHHT--CCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 44555555543 489999999999999999988654
No 92
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.54 E-value=1.1e-07 Score=71.03 Aligned_cols=102 Identities=13% Similarity=0.039 Sum_probs=64.8
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---CCCCC-----CCceeEEEEecCCCCCchh----
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIG---- 136 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~q-----i~~adiiviNK~Dl~~~~~---- 136 (178)
.+.+.+++|.|.. +...+. ..+|.+++|+|+++...... .+... -..+-++|+||+|+.+...
T Consensus 65 ~~~~~i~D~~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 143 (194)
T 2atx_A 65 QYLLGLYDTAGQEDYDRLRPLSY-PMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLAR 143 (194)
T ss_dssp EEEEEEECCCCSSSSTTTGGGGC-TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHH
T ss_pred EEEEEEEECCCCcchhHHHHHhc-CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhh
Confidence 3677899999942 112222 24799999999987532111 11000 1346799999999986410
Q ss_pred --------HhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 137 --------ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 137 --------~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+...+..+..+ ..+++++||++|+|++++++++.+.
T Consensus 144 ~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~~ 190 (194)
T 2atx_A 144 LNDMKEKPICVEQGQKLAKEIG-ACCYVECSALTQKGLKTVFDEAIIA 190 (194)
T ss_dssp HTTTTCCCCCHHHHHHHHHHHT-CSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred cccccCcccCHHHHHHHHHHcC-CcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 11233444444442 2389999999999999999988654
No 93
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.53 E-value=1.1e-07 Score=71.72 Aligned_cols=101 Identities=15% Similarity=0.080 Sum_probs=64.8
Q ss_pred CCCEEEEeCCcchh-----hhcccccccceEEEEEeCCCCCCCCc--C-------CCCCCCceeEEEEecCCCCCchhHh
Q 030407 73 KADLLLCESGGDNL-----AANFSRELADYIIYIIDVSGGDKIPR--K-------GGPGITQADLLVINKTDLASAIGAD 138 (178)
Q Consensus 73 ~~d~iiiEttG~~~-----~~~~~~~~ad~~I~VvD~~~~~~~~~--~-------~~~qi~~adiiviNK~Dl~~~~~~~ 138 (178)
.+.+.+++|.|..- ...+. ..+|.+++|+|+++...... . ....-..+-++|+||+|+.+.....
T Consensus 71 ~~~l~i~Dt~g~~~~~~~~~~~~~-~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~ 149 (195)
T 3cbq_A 71 EVTLVVYDIWEQGDAGGWLRDHCL-QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS 149 (195)
T ss_dssp EEEEEEECCCCCSGGGHHHHHHHH-HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSC
T ss_pred EEEEEEEecCCCccchhhhHHHhh-ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcC
Confidence 46678889999421 11111 24799999999986432110 0 0111234679999999997541123
Q ss_pred HHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 139 LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 139 ~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+...+..+.. ..+++++||++|+|++++|+.+.+.
T Consensus 150 ~~~~~~~a~~~--~~~~~e~Sa~~~~~v~~lf~~l~~~ 185 (195)
T 3cbq_A 150 LEEGRHLAGTL--SCKHIETSAALHHNTRELFEGAVRQ 185 (195)
T ss_dssp HHHHHHHHHHT--TCEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCEEEEEcCCCCCCHHHHHHHHHHH
Confidence 34445555444 3589999999999999999987654
No 94
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.53 E-value=1.2e-07 Score=69.80 Aligned_cols=101 Identities=14% Similarity=0.079 Sum_probs=63.9
Q ss_pred CCCEEEEeCCcchhhhcccccccceEEEEEeCCCCCCCCc--C-------CCC--CCCceeEEEEecCCCCC--chhHhH
Q 030407 73 KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPR--K-------GGP--GITQADLLVINKTDLAS--AIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~~~~~~~ad~~I~VvD~~~~~~~~~--~-------~~~--qi~~adiiviNK~Dl~~--~~~~~~ 139 (178)
.+.+.+++|.|.. ...+. ..+|++++|+|+++...... . ... .-..+-++|+||+|+.+ ......
T Consensus 53 ~~~l~i~Dt~G~~-~~~~~-~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~ 130 (178)
T 2iwr_A 53 THLVLIREEAGAP-DAKFS-GWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGD 130 (178)
T ss_dssp EEEEEEEECSSSC-CHHHH-HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCH
T ss_pred EEEEEEEECCCCc-hhHHH-HhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCH
Confidence 3567889999932 12222 24799999999987532110 0 000 12346799999999942 110223
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+...+..+.. ...+++++||++|+|++++|+.+.+.
T Consensus 131 ~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~lf~~l~~~ 166 (178)
T 2iwr_A 131 ARARALXADM-KRCSYYETXATYGLNVDRVFQEVAQK 166 (178)
T ss_dssp HHHHHHHHHH-SSEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHHHhh-cCCeEEEEeccccCCHHHHHHHHHHH
Confidence 4444444443 24689999999999999999987653
No 95
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.53 E-value=8e-08 Score=71.95 Aligned_cols=102 Identities=17% Similarity=0.052 Sum_probs=65.0
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc---CCCCC-----CCceeEEEEecCCCCCc--hhHh
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASA--IGAD 138 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~q-----i~~adiiviNK~Dl~~~--~~~~ 138 (178)
.+.+.+++|.|..- ...+. ..+|.+++|+|+++...... .+... -..+-++|+||+|+.++ ....
T Consensus 70 ~~~~~i~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 148 (194)
T 3reg_A 70 EFILHLWDTAGQEEYDRLRPLSY-ADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVT 148 (194)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGC-TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCC
T ss_pred EEEEEEEECCCcHHHHHHhHhhc-cCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCccc
Confidence 45678999999321 11122 24799999999987532211 11110 13467999999999752 1123
Q ss_pred HHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 139 LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 139 ~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+...+..+..+ ..+++++||++|+|++++|+.+.+.
T Consensus 149 ~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~ 185 (194)
T 3reg_A 149 KQEGDDLCQKLG-CVAYIEASSVAKIGLNEVFEKSVDC 185 (194)
T ss_dssp HHHHHHHHHHHT-CSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCEEEEeecCCCCCHHHHHHHHHHH
Confidence 344555555543 2349999999999999999987653
No 96
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.52 E-value=7.3e-08 Score=72.45 Aligned_cols=101 Identities=20% Similarity=0.172 Sum_probs=57.5
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc--C-------CCC--CCCceeEEEEecCCCCC-chh
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR--K-------GGP--GITQADLLVINKTDLAS-AIG 136 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~--~-------~~~--qi~~adiiviNK~Dl~~-~~~ 136 (178)
.+.+.|++|.|..- ...+. ..+|++++|+|+++...... . +.. .-..+-++|+||+|+.+ ...
T Consensus 72 ~~~~~l~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~ 150 (208)
T 2yc2_C 72 SVELFLLDTAGSDLYKEQISQYW-NGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ 150 (208)
T ss_dssp EEEEEEEETTTTHHHHHHHSTTC-CCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------C
T ss_pred EEEEEEEECCCcHHHHHHHHHHH-hhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhcc
Confidence 45789999999421 11222 35799999999987542111 0 000 12446799999999986 311
Q ss_pred HhHHHHHHHHHhcCCCCCEEEEeccc-CCCHHHHHHHHhhh
Q 030407 137 ADLAVMERDALRMRDGGPFIFAQVGW-VIGIIFTLSITHYI 176 (178)
Q Consensus 137 ~~~~~~~~~l~~~np~a~i~~~SA~~-g~gi~el~~~l~~~ 176 (178)
...+...+..+..+ .+++++||++ |+|+++++++|.+.
T Consensus 151 v~~~~~~~~~~~~~--~~~~~~Sa~~~~~gi~~l~~~i~~~ 189 (208)
T 2yc2_C 151 VRLDMAQDWATTNT--LDFFDVSANPPGKDADAPFLSIATT 189 (208)
T ss_dssp CCHHHHHHHHHHTT--CEEEECCC-------CHHHHHHHHH
T ss_pred CCHHHHHHHHHHcC--CEEEEeccCCCCcCHHHHHHHHHHH
Confidence 22355566666553 6899999999 99999999987653
No 97
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.52 E-value=8.1e-08 Score=69.59 Aligned_cols=101 Identities=14% Similarity=-0.016 Sum_probs=63.9
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc--CCC------CCCCceeEEEEecCCCCCc---hhH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASA---IGA 137 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~------~qi~~adiiviNK~Dl~~~---~~~ 137 (178)
.+.+.+++|.|..- ...+. ..+|.+++|+|+++...... .+. ..-..+-++|+||+|+.++ ...
T Consensus 51 ~~~~~~~D~~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v 129 (170)
T 1ek0_A 51 TVKFEIWDTAGQERFASLAPXYY-RNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKV 129 (170)
T ss_dssp EEEEEEEEECCSGGGGGGHHHHH-TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCS
T ss_pred EEEEEEEECCCChhhhhhhhhhh-ccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCC
Confidence 46788999999321 11111 24699999999987532111 000 0123456899999999753 101
Q ss_pred hHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 138 DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 138 ~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
..+...+..+.. ..+++++||++|+|+++++++|.+.
T Consensus 130 ~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 166 (170)
T 1ek0_A 130 AREEGEKLAEEK--GLLFFETSAKTGENVNDVFLGIGEK 166 (170)
T ss_dssp CHHHHHHHHHHH--TCEEEECCTTTCTTHHHHHHHHHTT
T ss_pred CHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 223333344433 3589999999999999999998764
No 98
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.51 E-value=1.4e-07 Score=70.35 Aligned_cols=101 Identities=14% Similarity=0.108 Sum_probs=63.9
Q ss_pred CCCEEEEeCCcchh-----hhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHh
Q 030407 73 KADLLLCESGGDNL-----AANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGAD 138 (178)
Q Consensus 73 ~~d~iiiEttG~~~-----~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~ 138 (178)
.+.+.|++|.|..- ...+. ..+|.+++|+|+++...... .....-..+-++|+||+|+.+.....
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~-~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~ 146 (189)
T 1z06_A 68 RIKIQLWDTAGQERFRKSMVQHYY-RNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVP 146 (189)
T ss_dssp EEEEEEEECCCSHHHHTTTHHHHH-TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSC
T ss_pred EEEEEEEECCCchhhhhhhhHHHh-cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeC
Confidence 46789999999421 11111 24799999999986432111 01111234579999999997541122
Q ss_pred HHHHHHHHHhcCCCCCEEEEecccC---CCHHHHHHHHhhh
Q 030407 139 LAVMERDALRMRDGGPFIFAQVGWV---IGIIFTLSITHYI 176 (178)
Q Consensus 139 ~~~~~~~l~~~np~a~i~~~SA~~g---~gi~el~~~l~~~ 176 (178)
.+...+..+.. ..+++++||++| +|++++|++|.+.
T Consensus 147 ~~~~~~~~~~~--~~~~~~~Sa~~~~~~~~i~~l~~~l~~~ 185 (189)
T 1z06_A 147 TDLAQKFADTH--SMPLFETSAKNPNDNDHVEAIFMTLAHK 185 (189)
T ss_dssp HHHHHHHHHHT--TCCEEECCSSSGGGGSCHHHHHHHHC--
T ss_pred HHHHHHHHHHc--CCEEEEEeCCcCCcccCHHHHHHHHHHH
Confidence 33444444433 358999999999 9999999988653
No 99
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.50 E-value=6e-08 Score=74.56 Aligned_cols=101 Identities=13% Similarity=-0.019 Sum_probs=62.6
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCCC------CCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGGP------GITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~~------qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
.+.+.|++|.|.. +...+. ..+|.+++|+|+++...... .+.. .-..+-++|+||+|+.+......+
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~~~~~-~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~ 139 (223)
T 3cpj_B 61 RIKAQIWDTAGQERYRAITSAYY-RGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTE 139 (223)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGT-TTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHH
T ss_pred EEEEEEEECCCccchhhhHHHHh-ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHH
Confidence 3678899999931 111222 24799999999987532211 0000 113456899999999753112234
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...++.+.. ..+++++||++|+|++++|++|.+.
T Consensus 140 ~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 173 (223)
T 3cpj_B 140 ESKTFAQEN--QLLFTETSALNSENVDKAFEELINT 173 (223)
T ss_dssp HHHHHHHHT--TCEEEECCCC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 445555543 3689999999999999999987654
No 100
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.50 E-value=7.7e-08 Score=70.94 Aligned_cols=103 Identities=14% Similarity=0.016 Sum_probs=63.9
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc---CCCCC-----CCceeEEEEecCCCCCchh----
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIG---- 136 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~q-----i~~adiiviNK~Dl~~~~~---- 136 (178)
.+.+.+++|.|..- ...+. ..+|.+++|+|+++...... .+... -..+-++|+||+|+.+...
T Consensus 52 ~~~~~i~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 130 (186)
T 1mh1_A 52 PVNLGLWDTAGQEDYDRLRPLSY-PQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEK 130 (186)
T ss_dssp EEEEEEECCCCSGGGTTTGGGGC-TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHH
T ss_pred EEEEEEEECCCCHhHHHHHHHhc-cCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhh
Confidence 46677999999421 11122 24799999999987532211 11000 1446799999999976410
Q ss_pred --------HhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 137 --------ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 137 --------~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
...+...+..+.. ...+++++||++|+|++++++.+.+.+
T Consensus 131 ~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 131 LKEKKLTPITYPQGLAMAKEI-GAVKYLECSALTQRGLKTVFDEAIRAV 178 (186)
T ss_dssp HHHTTCCCCCHHHHHHHHHHT-TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hcccccccCCHHHHHHHHHhc-CCcEEEEecCCCccCHHHHHHHHHHHH
Confidence 0112233333333 224899999999999999999887643
No 101
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.50 E-value=8.5e-08 Score=73.35 Aligned_cols=100 Identities=15% Similarity=0.135 Sum_probs=60.0
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---CCCCC-----CCceeEEEEecCCCCCchhHhH-
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIGADL- 139 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~q-----i~~adiiviNK~Dl~~~~~~~~- 139 (178)
.+.+.+++|.|.. +...+. ..+|.+++|+|+++...... .+... -..+-++|+||+|+.+. ...
T Consensus 81 ~~~l~l~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~ 157 (214)
T 2j1l_A 81 PVHLHIWDTAGQDDYDRLRPLFY-PDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKD--KSLV 157 (214)
T ss_dssp EEEEEEEEC----------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSC--HHHH
T ss_pred EEEEEEEECCCchhhhHHHHHHh-ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhcc--chhh
Confidence 4568899999931 111122 24699999999986532211 11000 13457999999999875 221
Q ss_pred -------------HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 -------------AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 -------------~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
++..+..+.. ...+++++||++|+|++++|+.+.+.
T Consensus 158 ~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~el~~~l~~~ 206 (214)
T 2j1l_A 158 NKLRRNGLEPVTYHRGQEMARSV-GAVAYLECSARLHDNVHAVFQEAAEV 206 (214)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHT-TCSEEEECBTTTTBSHHHHHHHHHHH
T ss_pred hhhcccccCcccHHHHHHHHHhc-CCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 2233344433 23489999999999999999988654
No 102
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.49 E-value=1.5e-07 Score=70.25 Aligned_cols=100 Identities=12% Similarity=0.028 Sum_probs=64.6
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CC-------CC-CCCceeEEEEecCCCCCchhHh
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KG-------GP-GITQADLLVINKTDLASAIGAD 138 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~-------~~-qi~~adiiviNK~Dl~~~~~~~ 138 (178)
.+.+.|++|.|.. +...+. ..+|++++|+|+++...... .+ .. .-..+-++|+||+|+.+.. ..
T Consensus 55 ~~~~~l~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-~~ 132 (199)
T 2gf0_A 55 VCTLQITDTTGSHQFPAMQRLSI-SKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-VD 132 (199)
T ss_dssp EEEEEEEECCGGGSCHHHHHHHH-HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-SC
T ss_pred EEEEEEEeCCChHHhHHHHHHhh-ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccc-cC
Confidence 4578899999932 111121 24699999999976432110 00 00 0133569999999997641 22
Q ss_pred HHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 139 LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 139 ~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+......+.. ..+++++||++|+|+++++++|.+.
T Consensus 133 ~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 168 (199)
T 2gf0_A 133 TREAQAVAQEW--KCAFMETSAKMNYNVKELFQELLTL 168 (199)
T ss_dssp HHHHHHHHHHH--TCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCeEEEEecCCCCCHHHHHHHHHHH
Confidence 33444444444 3589999999999999999998764
No 103
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.48 E-value=5.7e-08 Score=71.51 Aligned_cols=102 Identities=16% Similarity=0.024 Sum_probs=62.5
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---CCCCC-----CCceeEEEEecCCCCCchhH---
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIGA--- 137 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~q-----i~~adiiviNK~Dl~~~~~~--- 137 (178)
.+.+.+++|.|.. +...+. ..+|.+++|+|+++...... .+... -..+-++|+||+|+.+....
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 133 (182)
T 3bwd_D 55 TVNLGLWDTAGQEDYNRLRPLSY-RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFID 133 (182)
T ss_dssp ---CEEECCCC-CTTTTTGGGGG-TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHH
T ss_pred EEEEEEEECCCChhhhhhHHhhc-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccc
Confidence 4567799999931 111122 24799999999976532111 11000 13467999999999765211
Q ss_pred -------hHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 138 -------DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 138 -------~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
..+...+..+..+ ..+++++||++|+|++++++.+.+.
T Consensus 134 ~~~~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~ 178 (182)
T 3bwd_D 134 HPGAVPITTVQGEELKKLIG-APAYIECSSKSQENVKGVFDAAIRV 178 (182)
T ss_dssp C--CCCCCHHHHHHHHHHHT-CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHcC-CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 1233444444432 2489999999999999999988664
No 104
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.48 E-value=2.5e-07 Score=71.30 Aligned_cols=102 Identities=12% Similarity=0.072 Sum_probs=61.8
Q ss_pred CCCEEEEeCCcchh-h---hcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDNL-A---ANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~~-~---~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
.+.++++.|.|..- . .......+++.++|+|.++...... .....-..+-++|.||+||.+......
T Consensus 86 ~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~ 165 (211)
T 2g3y_A 86 SATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSV 165 (211)
T ss_dssp EEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCH
T ss_pred eeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeH
Confidence 35567888888321 0 1112235799999999976432110 000011346799999999974311122
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+....+.+.. ..+++++||++|+||+++|+.+.+.
T Consensus 166 ~e~~~~a~~~--~~~~~e~SAk~g~~v~elf~~l~~~ 200 (211)
T 2g3y_A 166 SEGRACAVVF--DCKFIETSAAVQHNVKELFEGIVRQ 200 (211)
T ss_dssp HHHHHHHHHH--TCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 2333333333 3589999999999999999987653
No 105
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.47 E-value=1e-07 Score=71.97 Aligned_cols=100 Identities=18% Similarity=0.161 Sum_probs=63.6
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---CCCCC-----CCceeEEEEecCCCCCchhHhH-
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIGADL- 139 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~q-----i~~adiiviNK~Dl~~~~~~~~- 139 (178)
.+.+.+++|.|.. +...+ ...+|.+++|+|++....... .+... -..+-++|+||+|+.+. ...
T Consensus 72 ~~~l~i~Dt~G~~~~~~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~ 148 (201)
T 2gco_A 72 QVELALWDTAGQEDYDRLRPLS-YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQD--EHTR 148 (201)
T ss_dssp EEEEEEECCCCSGGGTTTGGGG-CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTC--HHHH
T ss_pred EEEEEEEECCCchhHHHHHHHh-cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcC--ccch
Confidence 4678899999932 11112 234799999999986432110 11000 13467999999999865 221
Q ss_pred -------------HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 -------------AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 -------------~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+...+..+.. ...+++++||++|+|+++++++|.+.
T Consensus 149 ~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~~l~~~i~~~ 197 (201)
T 2gco_A 149 RELAKMKQEPVRSEEGRDMANRI-SAFGYLECSAKTKEGVREVFEMATRA 197 (201)
T ss_dssp HHHHTTTCCCCCHHHHHHHHHHT-TCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred hhhcccccCcCCHHHHHHHHHhC-CCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 2223333332 22389999999999999999988764
No 106
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.47 E-value=1.4e-07 Score=71.34 Aligned_cols=101 Identities=21% Similarity=0.103 Sum_probs=63.9
Q ss_pred CCCEEEEeCCcchhhhc---ccccccceEEEEEeCCCCCCCCc--CCCC------CCCceeEEEEecCCCCCchhHhHHH
Q 030407 73 KADLLLCESGGDNLAAN---FSRELADYIIYIIDVSGGDKIPR--KGGP------GITQADLLVINKTDLASAIGADLAV 141 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~~---~~~~~ad~~I~VvD~~~~~~~~~--~~~~------qi~~adiiviNK~Dl~~~~~~~~~~ 141 (178)
.+.+.|++|.|..--.. .....+|.+++|+|+++...... .+.. .-..+-++|+||+|+.... ...+.
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~~~~~ 146 (213)
T 3cph_A 68 KVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV-VTADQ 146 (213)
T ss_dssp EEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCC-SCHHH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc-cCHHH
Confidence 36789999999321111 11124799999999986532110 0000 0134679999999995331 22334
Q ss_pred HHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 142 MERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 142 ~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
..+..+.. ..+++++||++|+|+++++++|.+.
T Consensus 147 ~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 179 (213)
T 3cph_A 147 GEALAKEL--GIPFIESSAKNDDNVNEIFFTLAKL 179 (213)
T ss_dssp HHHHHHHH--TCCEEECBTTTTBSSHHHHHHHHHH
T ss_pred HHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 44444444 3589999999999999999988654
No 107
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.47 E-value=9.6e-08 Score=72.50 Aligned_cols=100 Identities=20% Similarity=0.192 Sum_probs=62.7
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCC---cCCCCC-----CCceeEEEEecCCCCCchhHhH-
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIP---RKGGPG-----ITQADLLVINKTDLASAIGADL- 139 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~---~~~~~q-----i~~adiiviNK~Dl~~~~~~~~- 139 (178)
.+.+.+++|.|.. +...+. ..+|.+++|+|++...... ..+... -..+-++|+||+|+.+. ...
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~ 148 (207)
T 2fv8_A 72 QVELALWDTAGQEDYDRLRPLSY-PDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSD--EHVR 148 (207)
T ss_dssp EEEEEEEECTTCTTCTTTGGGGC-TTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGC--HHHH
T ss_pred EEEEEEEECCCcHHHHHHHHhhc-CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhcc--ccch
Confidence 4678899999942 111222 3479999999997643211 111000 13457999999999765 221
Q ss_pred -------------HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 -------------AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 -------------~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+...+..+.. ...+++++||++|+|+++++++|.+.
T Consensus 149 ~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~el~~~l~~~ 197 (207)
T 2fv8_A 149 TELARMKQEPVRTDDGRAMAVRI-QAYDYLECSAKTKEGVREVFETATRA 197 (207)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHT-TCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred hhhhhcccCCCCHHHHHHHHHhc-CCCEEEEeeCCCCCCHHHHHHHHHHH
Confidence 1222222222 22389999999999999999988654
No 108
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.47 E-value=6.5e-08 Score=83.17 Aligned_cols=100 Identities=16% Similarity=0.069 Sum_probs=61.5
Q ss_pred CCCCEEEEeCCcchh----hhc------c-cccccceEEEEEeCCCCCCCCcC-CCCC-CCceeEEEEecCCCCCchhHh
Q 030407 72 FKADLLLCESGGDNL----AAN------F-SRELADYIIYIIDVSGGDKIPRK-GGPG-ITQADLLVINKTDLASAIGAD 138 (178)
Q Consensus 72 ~~~d~iiiEttG~~~----~~~------~-~~~~ad~~I~VvD~~~~~~~~~~-~~~q-i~~adiiviNK~Dl~~~~~~~ 138 (178)
.+..+.|++|.|..- ... . ....+|.+++|+|++++...... +... -..+.++|+||+|+.+. ..
T Consensus 270 ~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~~--~~ 347 (462)
T 3geh_A 270 GGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEK--QL 347 (462)
T ss_dssp TTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSCG--GG
T ss_pred CCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCCcc--hh
Confidence 457789999999410 011 1 12246999999999875432110 0000 12468999999999876 33
Q ss_pred HHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 139 LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 139 ~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
.. .++++....+++++||++|+|++++++.|.+.+
T Consensus 348 ~~----~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 348 IT----SLEYPENITQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp ST----TCCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred hH----HHHHhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 22 222233456899999999999999999987653
No 109
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.46 E-value=7.4e-08 Score=72.44 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=63.6
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---CCCCC-----CCceeEEEEecCCCCCchh----
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIG---- 136 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~q-----i~~adiiviNK~Dl~~~~~---- 136 (178)
.+.+.+++|.|.. +...+. ..+|.+++|+|+++...... .+... -..+-++|+||+|+.+...
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 145 (201)
T 2q3h_A 67 PVRLQLCDTAGQDEFDKLRPLCY-TNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIE 145 (201)
T ss_dssp EEEEEEEECCCSTTCSSSGGGGG-TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHH
T ss_pred EEEEEEEECCCCHHHHHHhHhhc-CCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhh
Confidence 3567799999942 112222 24799999999987532211 11000 1346799999999975310
Q ss_pred --------HhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 137 --------ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 137 --------~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+......+.. ...+++++||++|+|++++|+++.+.
T Consensus 146 ~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~Sa~~g~gi~~l~~~l~~~ 192 (201)
T 2q3h_A 146 LDKCKEKPVPEEAAKLLAEEI-KAASYIECSALTQKNLKEVFDAAIVA 192 (201)
T ss_dssp HHTTTCCCCCHHHHHHHHHHH-TCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred hcccccccCCHHHHHHHHHhc-CCcEEEEEecCCCCCHHHHHHHHHHH
Confidence 1123334444433 23489999999999999999987654
No 110
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.46 E-value=9.6e-08 Score=71.73 Aligned_cols=101 Identities=12% Similarity=0.033 Sum_probs=65.0
Q ss_pred CCCEEEEeCCcchh---hhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~~---~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~~ 140 (178)
.+.+.+++|.|..- ...+. ..+|.+++|+|+++...... .....-..+-++|+||+|+.+......+
T Consensus 75 ~~~~~l~Dt~G~~~~~~~~~~~-~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~ 153 (196)
T 2atv_A 75 VVSMEILDTAGQEDTIQREGHM-RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTE 153 (196)
T ss_dssp EEEEEEEECCCCCCCHHHHHHH-HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHH
T ss_pred EEEEEEEECCCCCcccchhhhh-ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHH
Confidence 46788999999321 11222 24699999999987432110 0001123457999999999753112234
Q ss_pred HHHHHHHhcCCCCCEEEEecccCC-CHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVI-GIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~-gi~el~~~l~~~ 176 (178)
...+..+.. ..+++++||++|+ |++++|++|.+.
T Consensus 154 ~~~~~~~~~--~~~~~~~Sa~~g~~gi~~l~~~l~~~ 188 (196)
T 2atv_A 154 EGEKLATEL--ACAFYECSACTGEGNITEIFYELCRE 188 (196)
T ss_dssp HHHHHHHHH--TSEEEECCTTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCeEEEECCCcCCcCHHHHHHHHHHH
Confidence 444555544 3589999999999 999999987654
No 111
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.45 E-value=1.9e-07 Score=75.74 Aligned_cols=103 Identities=11% Similarity=-0.045 Sum_probs=66.2
Q ss_pred CCCCEEEEeCCcch-hhh-----cc------cccccceEEEEEeCCCCCCCCcC-CC---CCCCceeEEEEecCCCCCch
Q 030407 72 FKADLLLCESGGDN-LAA-----NF------SRELADYIIYIIDVSGGDKIPRK-GG---PGITQADLLVINKTDLASAI 135 (178)
Q Consensus 72 ~~~d~iiiEttG~~-~~~-----~~------~~~~ad~~I~VvD~~~~~~~~~~-~~---~qi~~adiiviNK~Dl~~~~ 135 (178)
.+..+.|++|.|.. -.. .+ ....+|.+++|+|++. ...... .. .....+.++++||+|+.+..
T Consensus 54 ~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~ 132 (301)
T 1ega_A 54 GAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEK 132 (301)
T ss_dssp TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCH
T ss_pred CCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccH
Confidence 35678999999943 100 01 1123689999999976 221111 10 11246789999999998721
Q ss_pred hHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 136 GADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 136 ~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.......+.+.+..+..+++++||++|.|++++++.+.+.
T Consensus 133 -~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~ 172 (301)
T 1ega_A 133 -ADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKH 172 (301)
T ss_dssp -HHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHh
Confidence 3443334444444444579999999999999999988754
No 112
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.44 E-value=7.1e-08 Score=73.24 Aligned_cols=102 Identities=16% Similarity=0.077 Sum_probs=65.1
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---CCCCC-----CCceeEEEEecCCCCCchhH---
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIGA--- 137 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~q-----i~~adiiviNK~Dl~~~~~~--- 137 (178)
.+.+.+++|.|.. +...+. ..+|.+++|+|+++...... .+... -..+-++|+||+|+.+....
T Consensus 56 ~~~~~i~Dt~G~~~~~~~~~~~~-~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 134 (212)
T 2j0v_A 56 IVNLGLWDTAGQEDYSRLRPLSY-RGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLAD 134 (212)
T ss_dssp EEEEEEECCCCCCCCCC--CGGG-TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHT
T ss_pred EEEEEEEECCCcHHHHHHHHhhc-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcccccc
Confidence 4678899999931 111222 24799999999987532211 11000 13467999999999765110
Q ss_pred -----hHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 138 -----DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 138 -----~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
..+...+..+..+ ..+++++||++|+|++++|+++.+.
T Consensus 135 ~~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~~ 177 (212)
T 2j0v_A 135 HTNVITSTQGEELRKQIG-AAAYIECSSKTQQNVKAVFDTAIKV 177 (212)
T ss_dssp CSSCCCHHHHHHHHHHHT-CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHcC-CceEEEccCCCCCCHHHHHHHHHHH
Confidence 2344444444443 3489999999999999999987654
No 113
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.82 E-value=2.3e-08 Score=75.60 Aligned_cols=102 Identities=14% Similarity=0.059 Sum_probs=61.9
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---CCCCCC-----CceeEEEEecCCCCCchh----
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---KGGPGI-----TQADLLVINKTDLASAIG---- 136 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~qi-----~~adiiviNK~Dl~~~~~---- 136 (178)
.+.+.+++|.|.. +...+. ..+|.+++|+|+++...... .+...+ ..+-++|+||+|+.+...
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~-~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~ 155 (204)
T 3th5_A 77 PVNLGLWDTAGQEDYDRLRPLSY-PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEK 155 (204)
Confidence 4566689999932 111111 24699999999977543221 111111 345699999999976410
Q ss_pred --------HhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 137 --------ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 137 --------~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+...+..+.. ...+++++||++|+|++++++.|.+.
T Consensus 156 ~~~~~~~~v~~~~~~~~~~~~-~~~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 156 LKEKKLTPITYPQGLAMAKEI-GAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 1111222222222 12388999999999999999988654
No 114
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.44 E-value=3.7e-07 Score=75.63 Aligned_cols=100 Identities=21% Similarity=0.071 Sum_probs=67.0
Q ss_pred CCCEEEEeCCcchhhhc------------ccccccceEEEEEeCCCCCCC--Cc--CC----CCCC-CceeEEEEecCCC
Q 030407 73 KADLLLCESGGDNLAAN------------FSRELADYIIYIIDVSGGDKI--PR--KG----GPGI-TQADLLVINKTDL 131 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~~------------~~~~~ad~~I~VvD~~~~~~~--~~--~~----~~qi-~~adiiviNK~Dl 131 (178)
+.++.+++|.|..-... .....+|.+++|+|++..... .. .+ .... ..+-++|+||+|+
T Consensus 213 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl 292 (357)
T 2e87_A 213 YFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV 292 (357)
T ss_dssp TEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT
T ss_pred CceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc
Confidence 46789999999410000 011246899999998765421 10 00 0001 4567999999999
Q ss_pred CCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 132 ASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+. ...+...+.++.. ..+++++||++|+|++++++++.+.
T Consensus 293 ~~~--~~~~~~~~~~~~~--~~~~~~iSA~~g~gi~~l~~~i~~~ 333 (357)
T 2e87_A 293 ADE--ENIKRLEKFVKEK--GLNPIKISALKGTGIDLVKEEIIKT 333 (357)
T ss_dssp CCH--HHHHHHHHHHHHT--TCCCEECBTTTTBTHHHHHHHHHHH
T ss_pred CCh--HHHHHHHHHHHhc--CCCeEEEeCCCCcCHHHHHHHHHHH
Confidence 877 5555566665543 4589999999999999999988654
No 115
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.43 E-value=1.4e-07 Score=71.08 Aligned_cols=101 Identities=19% Similarity=0.128 Sum_probs=62.8
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCC------CCCCceeEEEEecCCCCCch-----
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAI----- 135 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~------~qi~~adiiviNK~Dl~~~~----- 135 (178)
.+.+.|++|.|.. +...+. ..+|.+++|+|+++...... .+. ..-..+-++|+||+|+.+..
T Consensus 76 ~~~l~i~Dt~G~~~~~~~~~~~~-~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~ 154 (199)
T 2p5s_A 76 RTVLQLWDTAGQERFRSIAKSYF-RKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQ 154 (199)
T ss_dssp EEEEEEEECTTCTTCHHHHHHHH-HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTC
T ss_pred EEEEEEEECCCCcchhhhHHHHH-hhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccc
Confidence 3568899999932 111111 24699999999986532211 000 00134679999999996320
Q ss_pred -hHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 136 -GADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 136 -~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
....+...+..+.. ..+++++||++|+|+++++++|.+.
T Consensus 155 ~~v~~~~~~~~~~~~--~~~~~~~SA~~g~gv~el~~~l~~~ 194 (199)
T 2p5s_A 155 KCVPGHFGEKLAMTY--GALFCETSAKDGSNIVEAVLHLARE 194 (199)
T ss_dssp CCCCHHHHHHHHHHH--TCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHc--CCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 01123334444444 3589999999999999999988764
No 116
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.43 E-value=1.4e-07 Score=76.72 Aligned_cols=78 Identities=14% Similarity=-0.041 Sum_probs=54.5
Q ss_pred ccceEEEEEeCCCCCCCCc---CCC---CCCCceeEEEEecCCCCCchhHh---HHHHHHHHHhcCCCCCEEEEecccCC
Q 030407 94 LADYIIYIIDVSGGDKIPR---KGG---PGITQADLLVINKTDLASAIGAD---LAVMERDALRMRDGGPFIFAQVGWVI 164 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~---~~~---~qi~~adiiviNK~Dl~~~~~~~---~~~~~~~l~~~np~a~i~~~SA~~g~ 164 (178)
.+|.++.|+|++++..... .+. .....+-++|+||+||.++ .+ .+...+..++. +.+++++||++|+
T Consensus 79 naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~--~~v~~~~~~~~~~~~~--g~~~~~~SA~~g~ 154 (302)
T 2yv5_A 79 NVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNE--EEKKELERWISIYRDA--GYDVLKVSAKTGE 154 (302)
T ss_dssp SCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH--HHHHHHHHHHHHHHHT--TCEEEECCTTTCT
T ss_pred hcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCc--cccHHHHHHHHHHHHC--CCeEEEEECCCCC
Confidence 4699999999987642211 111 0123456999999999876 42 44455555544 3589999999999
Q ss_pred CHHHHHHHHhh
Q 030407 165 GIIFTLSITHY 175 (178)
Q Consensus 165 gi~el~~~l~~ 175 (178)
|+++|++.+..
T Consensus 155 gi~~L~~~l~G 165 (302)
T 2yv5_A 155 GIDELVDYLEG 165 (302)
T ss_dssp THHHHHHHTTT
T ss_pred CHHHHHhhccC
Confidence 99999998753
No 117
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.42 E-value=2.9e-07 Score=77.60 Aligned_cols=103 Identities=17% Similarity=0.111 Sum_probs=60.3
Q ss_pred CCEEEEeCCcch-hhhccc--ccccceEEEEEeCCCCC-CCCc-CC---CCCCCc-eeEEEEecCCCCCchh--HhHHHH
Q 030407 74 ADLLLCESGGDN-LAANFS--RELADYIIYIIDVSGGD-KIPR-KG---GPGITQ-ADLLVINKTDLASAIG--ADLAVM 142 (178)
Q Consensus 74 ~d~iiiEttG~~-~~~~~~--~~~ad~~I~VvD~~~~~-~~~~-~~---~~qi~~-adiiviNK~Dl~~~~~--~~~~~~ 142 (178)
..+.|++|.|-. ...... ...+|.+++|+|++++. ..+. .+ ...+.. .-++++||+|+.+... ...+++
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i 160 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQI 160 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHH
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHH
Confidence 568999999921 111111 12469999999998764 1111 00 011222 3589999999987511 123455
Q ss_pred HHHHHhcC-CCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 143 ERDALRMR-DGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 143 ~~~l~~~n-p~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+.+++.. ...+++++||++|+|+++|+++|.+.
T Consensus 161 ~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~ 195 (408)
T 1s0u_A 161 KEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDF 195 (408)
T ss_dssp HHHHTTSTTTTCCEEEC------CHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence 55555432 35799999999999999999998763
No 118
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.41 E-value=2e-08 Score=75.83 Aligned_cols=102 Identities=19% Similarity=0.139 Sum_probs=57.2
Q ss_pred CCEEEEeCCcchhhh---cccccccceEEEEEeCCCCCCCCc--CC------CCCCCceeEEEEecCCCCCchhHhHHHH
Q 030407 74 ADLLLCESGGDNLAA---NFSRELADYIIYIIDVSGGDKIPR--KG------GPGITQADLLVINKTDLASAIGADLAVM 142 (178)
Q Consensus 74 ~d~iiiEttG~~~~~---~~~~~~ad~~I~VvD~~~~~~~~~--~~------~~qi~~adiiviNK~Dl~~~~~~~~~~~ 142 (178)
+.+.|++|.|..--. ......+|.+++|+|+++...... .+ ...-..+-++|+||+|+.+......+..
T Consensus 82 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~ 161 (199)
T 3l0i_B 82 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTA 161 (199)
T ss_dssp EEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-
T ss_pred EEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHH
Confidence 578899999932111 111124799999999987542111 00 0011346799999999975411111223
Q ss_pred HHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 143 ERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 143 ~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
.+..+.. ..+++++||++|+|++++|++|.+.+
T Consensus 162 ~~~~~~~--~~~~~~vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 162 KEFADSL--GIPFLETSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp CHHHHTT--TCCBCCCCC---HHHHHHHHHHTTTT
T ss_pred HHHHHHc--CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3334433 46899999999999999999987653
No 119
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.41 E-value=1.5e-07 Score=80.10 Aligned_cols=83 Identities=16% Similarity=0.079 Sum_probs=56.6
Q ss_pred ccceEEEEEeCCCCCCCCcC-CC---CCCCceeEEEEecCCCCCchhHhHHHHHHHHHhcC---CCCCEEEEecccCCCH
Q 030407 94 LADYIIYIIDVSGGDKIPRK-GG---PGITQADLLVINKTDLASAIGADLAVMERDALRMR---DGGPFIFAQVGWVIGI 166 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~~-~~---~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~n---p~a~i~~~SA~~g~gi 166 (178)
.+|.+++|+|++++...+.. +. .....+-++|+||+|+.+......+++.+.+++.. ..++++++||++|+|+
T Consensus 257 ~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v 336 (436)
T 2hjg_A 257 RSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRI 336 (436)
T ss_dssp HCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTG
T ss_pred hCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCH
Confidence 36899999999886543221 00 01245779999999998752122344444444332 4689999999999999
Q ss_pred HHHHHHHhhh
Q 030407 167 IFTLSITHYI 176 (178)
Q Consensus 167 ~el~~~l~~~ 176 (178)
+++++.+.+.
T Consensus 337 ~~l~~~i~~~ 346 (436)
T 2hjg_A 337 HTLMPAIIKA 346 (436)
T ss_dssp GGHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 120
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.41 E-value=2.6e-07 Score=77.87 Aligned_cols=101 Identities=14% Similarity=0.081 Sum_probs=64.4
Q ss_pred CCEEEEeCCcch-hhhccc--ccccceEEEEEeCCCCC-CCCc-CC---CCCCCc-eeEEEEecCCCCCchhHhH----H
Q 030407 74 ADLLLCESGGDN-LAANFS--RELADYIIYIIDVSGGD-KIPR-KG---GPGITQ-ADLLVINKTDLASAIGADL----A 140 (178)
Q Consensus 74 ~d~iiiEttG~~-~~~~~~--~~~ad~~I~VvD~~~~~-~~~~-~~---~~qi~~-adiiviNK~Dl~~~~~~~~----~ 140 (178)
..+.|++|.|-. ...... ...+|.+++|+|++++. ..+. .+ ...+.. .-++++||+|+.++ .+. +
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~--~~~~~~~~ 160 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDK--EKALENYR 160 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH--HHHHHHHH
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCH--HHHHHHHH
Confidence 468999999931 111111 12469999999998764 2111 00 011121 34788999999876 332 3
Q ss_pred HHHHHHHhc-CCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRM-RDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~-np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
++.+.++.. ....+++++||++|+|+++|+++|.+.
T Consensus 161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~ 197 (410)
T 1kk1_A 161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDF 197 (410)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence 344444432 235799999999999999999998763
No 121
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.41 E-value=1.6e-07 Score=72.00 Aligned_cols=102 Identities=15% Similarity=0.103 Sum_probs=65.5
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---CCCCC-----CCceeEEEEecCCCCCch-----
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAI----- 135 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~q-----i~~adiiviNK~Dl~~~~----- 135 (178)
.+.+.|++|.|.. +...+. ..+|++++|+|+++...... .+... -..+-++|+||+|+.++.
T Consensus 74 ~~~l~i~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~ 152 (214)
T 3q3j_B 74 RVELSLWDTSGSPYYDNVRPLCY-SDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLME 152 (214)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGC-TTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHH
T ss_pred EEEEEEEECCCCHhHHHHHHHHc-CCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhh
Confidence 4678899999932 112222 24799999999987543211 11000 134679999999996520
Q ss_pred -------hHhHHHHHHHHHhcCCCCCEEEEecccCCC-HHHHHHHHhhh
Q 030407 136 -------GADLAVMERDALRMRDGGPFIFAQVGWVIG-IIFTLSITHYI 176 (178)
Q Consensus 136 -------~~~~~~~~~~l~~~np~a~i~~~SA~~g~g-i~el~~~l~~~ 176 (178)
....+...++.+..+ ..+++++||++|+| ++++|+.+.+.
T Consensus 153 ~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~SA~~g~g~v~~lf~~l~~~ 200 (214)
T 3q3j_B 153 LSHQKQAPISYEQGCAIAKQLG-AEIYLEGSAFTSEKSIHSIFRTASML 200 (214)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHT-CSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred hcccccCccCHHHHHHHHHHcC-CCEEEEeccCCCcccHHHHHHHHHHH
Confidence 022334445555442 23899999999999 99999988654
No 122
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.40 E-value=1.8e-08 Score=80.14 Aligned_cols=99 Identities=20% Similarity=0.099 Sum_probs=63.3
Q ss_pred CCCEEEEeCCcch-hh-------------hccc-ccccceEEEEEeCCCCCCCCc--CCCCCCCceeEEEEecCCCCCch
Q 030407 73 KADLLLCESGGDN-LA-------------ANFS-RELADYIIYIIDVSGGDKIPR--KGGPGITQADLLVINKTDLASAI 135 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~-------------~~~~-~~~ad~~I~VvD~~~~~~~~~--~~~~qi~~adiiviNK~Dl~~~~ 135 (178)
+..+.|++|.|.. .. ..+. ...+|.+++|+|+++...... .....+..+.++|+||+|+.+..
T Consensus 47 ~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~ 126 (256)
T 3iby_A 47 EHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAEHR 126 (256)
T ss_dssp TEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHHHT
T ss_pred CeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCCcC
Confidence 4578999999941 11 1111 124699999999987321110 01112456789999999986541
Q ss_pred h--HhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 136 G--ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 136 ~--~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
. ...+.+.+. + +.+++++||++|+|++++++.+.+.
T Consensus 127 ~~~~~~~~l~~~---l--g~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 127 GISIDTEKLESL---L--GCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp TCEECHHHHHHH---H--CSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred CcHHHHHHHHHH---c--CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 0 122333322 2 3699999999999999999998653
No 123
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.40 E-value=2.7e-08 Score=76.21 Aligned_cols=99 Identities=10% Similarity=-0.054 Sum_probs=63.6
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc--CCCCC-----CCceeEEEEecCCCCCchhHhHHH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR--KGGPG-----ITQADLLVINKTDLASAIGADLAV 141 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~~q-----i~~adiiviNK~Dl~~~~~~~~~~ 141 (178)
++.+.|++|.|..- ...+. ..+|.+++|+|+++...... .+... -..+-++|+||+|+.+. .....
T Consensus 63 ~~~~~i~Dt~G~~~~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~ 139 (221)
T 3gj0_A 63 PIKFNVWDTAGQEKFGGLRDGYY-IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR--KVKAK 139 (221)
T ss_dssp EEEEEEEEECSGGGTSCCCHHHH-TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSC--SSCGG
T ss_pred EEEEEEEeCCChHHHhHHHHHHH-hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccc--cccHH
Confidence 46788999999321 11111 24799999999987532211 00000 13457999999999765 22222
Q ss_pred HHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 142 MERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 142 ~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
..+..+.. ..+++++||++|.|++++|++|.+.
T Consensus 140 ~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~ 172 (221)
T 3gj0_A 140 SIVFHRKK--NLQYYDISAKSNYNFEKPFLWLARK 172 (221)
T ss_dssp GCCHHHHH--TCEEEECBGGGTBTTTHHHHHHHHH
T ss_pred HHHHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 33333333 3589999999999999999987653
No 124
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.34 E-value=1.2e-07 Score=68.23 Aligned_cols=98 Identities=15% Similarity=0.051 Sum_probs=62.1
Q ss_pred CCCEEEEeCCcchh--------hhc--ccccccceEEEEEeCCCCCCCCcC-CC---CCCCceeEEEEecCCCCCchhHh
Q 030407 73 KADLLLCESGGDNL--------AAN--FSRELADYIIYIIDVSGGDKIPRK-GG---PGITQADLLVINKTDLASAIGAD 138 (178)
Q Consensus 73 ~~d~iiiEttG~~~--------~~~--~~~~~ad~~I~VvD~~~~~~~~~~-~~---~qi~~adiiviNK~Dl~~~~~~~ 138 (178)
+..+.+++|.|..- ... .....+|.+++|+|+++....... .. .....+-++|+||+|+.+. .+
T Consensus 48 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~ 125 (161)
T 2dyk_A 48 RGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKH--EL 125 (161)
T ss_dssp TEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGG--GG
T ss_pred CceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccc--hH
Confidence 34788999999421 000 011246999999999875332110 00 0123467999999999765 21
Q ss_pred HHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 139 LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 139 ~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+.. +. ...+++++||++|+|++++++++.+.
T Consensus 126 --~~~~~~-~~-~~~~~~~~Sa~~~~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 126 --YLGPLY-GL-GFGDPIPTSSEHARGLEELLEAIWER 159 (161)
T ss_dssp --GCGGGG-GG-SSCSCEECBTTTTBSHHHHHHHHHHH
T ss_pred --hHHHHH-hC-CCCCeEEEecccCCChHHHHHHHHHh
Confidence 122222 22 23379999999999999999988764
No 125
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.34 E-value=3.9e-07 Score=71.98 Aligned_cols=80 Identities=18% Similarity=0.098 Sum_probs=54.5
Q ss_pred ccceEEEEEeCCCC--CCCCc--CCCC-------CCCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEeccc
Q 030407 94 LADYIIYIIDVSGG--DKIPR--KGGP-------GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGW 162 (178)
Q Consensus 94 ~ad~~I~VvD~~~~--~~~~~--~~~~-------qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~ 162 (178)
.+|++++|+|+++. ..... .+.. .-..+-++|+||+|+.+. ...+...+..+.. ...+++++||++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~--~~v~~~~~~~~~~-~~~~~~e~SAk~ 238 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE--RYIRDAHTFALSK-KNLQVVETSARS 238 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH--HHHHHHHHHHHTS-SSCCEEECBTTT
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc--HHHHHHHHHHHhc-CCCeEEEEECCC
Confidence 36999999999875 32211 0000 013457999999999765 4445555555432 356899999999
Q ss_pred CCCHHHHHHHHhhh
Q 030407 163 VIGIIFTLSITHYI 176 (178)
Q Consensus 163 g~gi~el~~~l~~~ 176 (178)
|+|++++|+.|.+.
T Consensus 239 g~gv~elf~~l~~~ 252 (255)
T 3c5h_A 239 NVNVDLAFSTLVQL 252 (255)
T ss_dssp TBSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999988654
No 126
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.32 E-value=2.4e-07 Score=68.84 Aligned_cols=102 Identities=15% Similarity=0.108 Sum_probs=64.6
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---CCCCC-----CCceeEEEEecCCCCCch-----
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAI----- 135 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~q-----i~~adiiviNK~Dl~~~~----- 135 (178)
.+.+.+++|.|.. +...+ ...+|.+++|+|+++...... .+... -..+-++|+||+|+.++.
T Consensus 54 ~~~~~i~Dt~G~~~~~~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~ 132 (184)
T 1m7b_A 54 RIELSLWDTSGSPYYDNVRPLS-YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVE 132 (184)
T ss_dssp EEEEEEEEECCSGGGTTTGGGG-CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHH
T ss_pred EEEEEEEECCCChhhhhhHHhh-cCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhh
Confidence 4678899999942 11112 235799999999986432211 11000 134679999999997430
Q ss_pred -------hHhHHHHHHHHHhcCCCCCEEEEecc-cCCCHHHHHHHHhhh
Q 030407 136 -------GADLAVMERDALRMRDGGPFIFAQVG-WVIGIIFTLSITHYI 176 (178)
Q Consensus 136 -------~~~~~~~~~~l~~~np~a~i~~~SA~-~g~gi~el~~~l~~~ 176 (178)
....+...+..++.+ ..+++++||+ +|+|++++|+.+.+.
T Consensus 133 ~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~~~~~gi~~l~~~i~~~ 180 (184)
T 1m7b_A 133 LSNHRQTPVSYDQGANMAKQIG-AATYIECSALQSENSVRDIFHVATLA 180 (184)
T ss_dssp HHTTTCCCCCHHHHHHHHHHHT-CSEEEECBTTTBHHHHHHHHHHHHHH
T ss_pred hhhcccCCCCHHHHHHHHHHcC-CcEEEEeeecCCCcCHHHHHHHHHHH
Confidence 012233444454443 3589999999 699999999988764
No 127
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.31 E-value=9.6e-07 Score=75.27 Aligned_cols=98 Identities=11% Similarity=0.029 Sum_probs=58.4
Q ss_pred CCCEEEEeCCcch-hh-hc-ccccccceEEEEEeCCCCCCC-------Cc-CC---CCCCCce-eEEEEecCCCCCch--
Q 030407 73 KADLLLCESGGDN-LA-AN-FSRELADYIIYIIDVSGGDKI-------PR-KG---GPGITQA-DLLVINKTDLASAI-- 135 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~-~~-~~~~~ad~~I~VvD~~~~~~~-------~~-~~---~~qi~~a-diiviNK~Dl~~~~-- 135 (178)
+..+.|+.|.|-. .. .+ .....+|.+++|+|++.+... +. .+ ...+... -++++||+|+.+..
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~ 173 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 173 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchH
Confidence 4578999999931 00 01 111247999999999887421 10 00 0113334 58999999996421
Q ss_pred hHhHHH----HHHHHHhcC--C--CCCEEEEecccCCCHHHHH
Q 030407 136 GADLAV----MERDALRMR--D--GGPFIFAQVGWVIGIIFTL 170 (178)
Q Consensus 136 ~~~~~~----~~~~l~~~n--p--~a~i~~~SA~~g~gi~el~ 170 (178)
.+..+. +.+.+++.. + ..+++++||++|+|++++.
T Consensus 174 ~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~ 216 (439)
T 3j2k_7 174 NERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQS 216 (439)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCccccccc
Confidence 022222 333333332 1 4689999999999999843
No 128
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.29 E-value=2.5e-06 Score=67.95 Aligned_cols=77 Identities=9% Similarity=0.015 Sum_probs=56.5
Q ss_pred ccceEEEEEeCCCCCCCCc-CCCCCCCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHH
Q 030407 94 LADYIIYIIDVSGGDKIPR-KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI 172 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~-~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~ 172 (178)
.+|.++.|+|+..+..... ... .+..+-++|+||+||+++ +..+...++.++. +.++ .+||++|.|+++|++.
T Consensus 21 ~~D~vl~VvDar~P~~~~~~~l~-ll~k~~iivlNK~DL~~~--~~~~~~~~~~~~~--g~~v-~iSa~~~~gi~~L~~~ 94 (262)
T 3cnl_A 21 LVNTVVEVRDARAPFATSAYGVD-FSRKETIILLNKVDIADE--KTTKKWVEFFKKQ--GKRV-ITTHKGEPRKVLLKKL 94 (262)
T ss_dssp TCSEEEEEEETTSTTTTSCTTSC-CTTSEEEEEEECGGGSCH--HHHHHHHHHHHHT--TCCE-EECCTTSCHHHHHHHH
T ss_pred hCCEEEEEeeCCCCCcCcChHHH-hcCCCcEEEEECccCCCH--HHHHHHHHHHHHc--CCeE-EEECCCCcCHHHHHHH
Confidence 4699999999987654321 111 226678999999999987 5555555556543 3467 9999999999999998
Q ss_pred Hhhh
Q 030407 173 THYI 176 (178)
Q Consensus 173 l~~~ 176 (178)
+...
T Consensus 95 l~~~ 98 (262)
T 3cnl_A 95 SFDR 98 (262)
T ss_dssp CCCT
T ss_pred HHHh
Confidence 7653
No 129
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.28 E-value=1.3e-06 Score=77.30 Aligned_cols=100 Identities=14% Similarity=0.101 Sum_probs=64.0
Q ss_pred CCEEEEeCCcch-hhhcc--cccccceEEEEEeCCCCCCCCcC--C--CCCCCceeEEEEecCCCCCchhHhHHHHHHHH
Q 030407 74 ADLLLCESGGDN-LAANF--SRELADYIIYIIDVSGGDKIPRK--G--GPGITQADLLVINKTDLASAIGADLAVMERDA 146 (178)
Q Consensus 74 ~d~iiiEttG~~-~~~~~--~~~~ad~~I~VvD~~~~~~~~~~--~--~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l 146 (178)
+.+-||+|.|-. ..... ....+|++++|+|++++...+.. + ......+-++++||+|+.+. . .+...+.+
T Consensus 71 ~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a--~-~~~v~~ei 147 (599)
T 3cb4_D 71 YQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAA--D-PERVAEEI 147 (599)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTC--C-HHHHHHHH
T ss_pred EEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccc--c-HHHHHHHH
Confidence 567799999931 00000 11236999999999887543221 0 00123467999999999875 2 22333333
Q ss_pred HhcC--CCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 147 LRMR--DGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 147 ~~~n--p~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
++.. +..+++++||++|.|++++++.+.+.
T Consensus 148 ~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~ 179 (599)
T 3cb4_D 148 EDIVGIDATDAVRCSAKTGVGVQDVLERLVRD 179 (599)
T ss_dssp HHHTCCCCTTCEEECTTTCTTHHHHHHHHHHH
T ss_pred HHHhCCCcceEEEeecccCCCchhHHHHHhhc
Confidence 3332 22479999999999999999987654
No 130
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.27 E-value=7.9e-07 Score=75.63 Aligned_cols=82 Identities=18% Similarity=0.139 Sum_probs=55.2
Q ss_pred cceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCchhHhHHHHHHHHHhc---CCCCCEEEEecccCCCHH
Q 030407 95 ADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVGWVIGII 167 (178)
Q Consensus 95 ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~---np~a~i~~~SA~~g~gi~ 167 (178)
+|.+++++|++.+...... .......+-++|+||+|+.+......+++.+.+++. .+.++++++||++|.|++
T Consensus 264 ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 343 (439)
T 1mky_A 264 ADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNID 343 (439)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHH
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHH
Confidence 5889999999875432211 011134578999999999865211244444444322 246799999999999999
Q ss_pred HHHHHHhhh
Q 030407 168 FTLSITHYI 176 (178)
Q Consensus 168 el~~~l~~~ 176 (178)
++++.+.+.
T Consensus 344 ~l~~~i~~~ 352 (439)
T 1mky_A 344 RMIDAMNLA 352 (439)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988654
No 131
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.27 E-value=9.9e-07 Score=78.06 Aligned_cols=100 Identities=21% Similarity=0.149 Sum_probs=64.7
Q ss_pred CCEEEEeCCcch-hhhcc--cccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCchhHhHHHHHHHH
Q 030407 74 ADLLLCESGGDN-LAANF--SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERDA 146 (178)
Q Consensus 74 ~d~iiiEttG~~-~~~~~--~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l 146 (178)
+.+-||+|.|-. ..... ....+|++++|+|++++...+.. .......+-++++||+|+.+. . .+...+.+
T Consensus 73 ~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a--~-~~~v~~el 149 (600)
T 2ywe_A 73 YKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSA--D-VDRVKKQI 149 (600)
T ss_dssp EEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTC--C-HHHHHHHH
T ss_pred EEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCcccc--C-HHHHHHHH
Confidence 567799999931 00000 11246999999999887543211 001134467999999999865 2 33344445
Q ss_pred HhcCC--CCCEEEEecccCCCHHHHHHHHhhh
Q 030407 147 LRMRD--GGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 147 ~~~np--~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
++... ..+++++||++|.|++++++.+.+.
T Consensus 150 ~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~ 181 (600)
T 2ywe_A 150 EEVLGLDPEEAILASAKEGIGIEEILEAIVNR 181 (600)
T ss_dssp HHTSCCCGGGCEECBTTTTBSHHHHHHHHHHH
T ss_pred HHhhCCCcccEEEEEeecCCCchHHHHHHHHh
Confidence 44322 2369999999999999999987653
No 132
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.26 E-value=1.3e-06 Score=76.17 Aligned_cols=62 Identities=16% Similarity=0.096 Sum_probs=39.4
Q ss_pred CCCEEEEeCCcch-hh-hc-ccccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCc
Q 030407 73 KADLLLCESGGDN-LA-AN-FSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 134 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~-~~-~~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~ 134 (178)
+..+.||.|.|.. .. .. .....+|++++|+|++.+...... .......+-++|+||+|+...
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 81 DYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred CEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 5678999999931 00 11 111247999999999886543211 011134567999999999765
No 133
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.25 E-value=1e-07 Score=75.72 Aligned_cols=99 Identities=17% Similarity=0.107 Sum_probs=63.7
Q ss_pred CCCEEEEeCCcch-h---------hhcccc-cccceEEEEEeCCCCCCCCcCC--CCCCCceeEEEEecCCCCCchh--H
Q 030407 73 KADLLLCESGGDN-L---------AANFSR-ELADYIIYIIDVSGGDKIPRKG--GPGITQADLLVINKTDLASAIG--A 137 (178)
Q Consensus 73 ~~d~iiiEttG~~-~---------~~~~~~-~~ad~~I~VvD~~~~~~~~~~~--~~qi~~adiiviNK~Dl~~~~~--~ 137 (178)
+..+.|++|.|.. . ...+.. ..+|.+++|+|+++........ ......+-++|+||+|+.+... .
T Consensus 51 ~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~ 130 (258)
T 3a1s_A 51 GYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKI 130 (258)
T ss_dssp TEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCB
T ss_pred CeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCccchHH
Confidence 5789999999941 1 112221 2469999999998753221100 0113457799999999864310 1
Q ss_pred hHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 138 DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 138 ~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+.+.+. +.+ +.+++++||++|+|++++++.+.+.
T Consensus 131 ~~~~l~---~~l--g~~vi~~SA~~g~gi~el~~~i~~~ 164 (258)
T 3a1s_A 131 DRYELQ---KHL--GIPVVFTSSVTGEGLEELKEKIVEY 164 (258)
T ss_dssp CHHHHH---HHH--CSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHH---HHc--CCCEEEEEeeCCcCHHHHHHHHHHH
Confidence 122332 333 3689999999999999999988664
No 134
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.25 E-value=6.4e-07 Score=77.16 Aligned_cols=96 Identities=14% Similarity=0.084 Sum_probs=56.5
Q ss_pred CCCEEEEeCCcch-hhh--cccccccceEEEEEeCCCCCCCCcC-CCC----------CCCc-eeEEEEecCCCCCchhH
Q 030407 73 KADLLLCESGGDN-LAA--NFSRELADYIIYIIDVSGGDKIPRK-GGP----------GITQ-ADLLVINKTDLASAIGA 137 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~~--~~~~~~ad~~I~VvD~~~~~~~~~~-~~~----------qi~~-adiiviNK~Dl~~~~~~ 137 (178)
+..+.|++|.|.. ... ......+|.+++|+|++.+...... ... .+.. .-++|+||+|+.+....
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~ 189 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 189 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHH
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHH
Confidence 5689999999931 010 0111347999999999886321100 000 1222 36889999999873213
Q ss_pred hHHHHHHHHHh----cC---CCCCEEEEecccCCCHHH
Q 030407 138 DLAVMERDALR----MR---DGGPFIFAQVGWVIGIIF 168 (178)
Q Consensus 138 ~~~~~~~~l~~----~n---p~a~i~~~SA~~g~gi~e 168 (178)
..+.+.+.+++ .. +..+++++||++|+|+++
T Consensus 190 ~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 190 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 33434433332 22 146899999999999975
No 135
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.25 E-value=3.5e-08 Score=78.64 Aligned_cols=99 Identities=23% Similarity=0.225 Sum_probs=62.6
Q ss_pred CCCEEEEeCCcch----------hhhccc-ccccceEEEEEeCCCCCCCCcCCC--CCCC-ceeEEEEecCCCCCchh--
Q 030407 73 KADLLLCESGGDN----------LAANFS-RELADYIIYIIDVSGGDKIPRKGG--PGIT-QADLLVINKTDLASAIG-- 136 (178)
Q Consensus 73 ~~d~iiiEttG~~----------~~~~~~-~~~ad~~I~VvD~~~~~~~~~~~~--~qi~-~adiiviNK~Dl~~~~~-- 136 (178)
+..+.+++|.|.. +...+. ...+|.+++|+|++++........ .... .+.++|+||+|+.+...
T Consensus 49 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~ 128 (271)
T 3k53_A 49 EKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAK 128 (271)
T ss_dssp TEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCC
T ss_pred CceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhcCcccccH
Confidence 4568999999941 111111 124799999999987532111000 0122 56799999999864310
Q ss_pred HhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 137 ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 137 ~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+.+.+ .+ +.+++++||++|+|++++++.+...
T Consensus 129 ~~~~~l~~---~l--g~~~~~~Sa~~g~gi~~l~~~i~~~ 163 (271)
T 3k53_A 129 IDIKKMRK---EL--GVPVIPTNAKKGEGVEELKRMIALM 163 (271)
T ss_dssp CCHHHHHH---HH--SSCEEECBGGGTBTHHHHHHHHHHH
T ss_pred HHHHHHHH---Hc--CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 12233333 22 3689999999999999999988764
No 136
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.24 E-value=2.3e-08 Score=80.04 Aligned_cols=100 Identities=16% Similarity=0.138 Sum_probs=63.1
Q ss_pred CCCEEEEeCCcchh-h-------------hccc-ccccceEEEEEeCCCCCCCCc--CCCCCCCceeEEEEecCCCCCch
Q 030407 73 KADLLLCESGGDNL-A-------------ANFS-RELADYIIYIIDVSGGDKIPR--KGGPGITQADLLVINKTDLASAI 135 (178)
Q Consensus 73 ~~d~iiiEttG~~~-~-------------~~~~-~~~ad~~I~VvD~~~~~~~~~--~~~~qi~~adiiviNK~Dl~~~~ 135 (178)
+..+.++.|.|..- . ..+. ...+|.+++|+|+++...... ........+.++|+||+|+.+..
T Consensus 49 ~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~ 128 (274)
T 3i8s_A 49 DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQ 128 (274)
T ss_dssp SCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHHHT
T ss_pred CCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchhhh
Confidence 56788999999411 0 0111 124699999999986322110 00011345789999999986541
Q ss_pred h--HhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 136 G--ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 136 ~--~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
. ...+.+.+ .+ +.+++++||++|+|++++++.+.+.+
T Consensus 129 ~~~~~~~~l~~---~l--g~~~i~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 129 NIRIEIDALSA---RL--GCPVIPLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp TEEECHHHHHH---HH--TSCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHH---hc--CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 0 12233332 22 35899999999999999999987643
No 137
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.24 E-value=3.9e-07 Score=69.43 Aligned_cols=103 Identities=15% Similarity=0.106 Sum_probs=64.7
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc---CCCCC-----CCceeEEEEecCCCCCch-----
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAI----- 135 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~q-----i~~adiiviNK~Dl~~~~----- 135 (178)
.+.+.|++|.|.. +...+. ..+|.+++|+|+++...... .+... -..+-++|+||+|+.+..
T Consensus 75 ~~~l~i~Dt~G~~~~~~~~~~~~-~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~ 153 (205)
T 1gwn_A 75 RIELSLWDTSGSPYYDNVRPLSY-PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVE 153 (205)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGC-TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHH
T ss_pred EEEEEEEeCCCcHhhhHHHHhhc-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhh
Confidence 4678899999932 111222 35799999999986432111 11000 134679999999997430
Q ss_pred -------hHhHHHHHHHHHhcCCCCCEEEEecc-cCCCHHHHHHHHhhhh
Q 030407 136 -------GADLAVMERDALRMRDGGPFIFAQVG-WVIGIIFTLSITHYIV 177 (178)
Q Consensus 136 -------~~~~~~~~~~l~~~np~a~i~~~SA~-~g~gi~el~~~l~~~~ 177 (178)
....+...+..+..+ ..+++++||+ +|+|++++|+.+.+.+
T Consensus 154 ~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 154 LSNHRQTPVSYDQGANMAKQIG-AATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HHTTTCCCCCHHHHHHHHHHHT-CSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred hcccccCCCCHHHHHHHHHHcC-CCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 011233444444443 3589999999 6899999999887643
No 138
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.23 E-value=1.2e-06 Score=77.57 Aligned_cols=103 Identities=17% Similarity=0.069 Sum_probs=62.2
Q ss_pred CCEEEEeCCcch-hhhcc--cccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCchh----------
Q 030407 74 ADLLLCESGGDN-LAANF--SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIG---------- 136 (178)
Q Consensus 74 ~d~iiiEttG~~-~~~~~--~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~~---------- 136 (178)
+.+.|+.|.|-. ..... ....+|.+|+|+|++++...+.. +......+-++++||+|+.+...
T Consensus 70 ~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~ 149 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMET 149 (594)
T ss_dssp CEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHH
Confidence 468999999921 11111 11246999999999986432210 01112346799999999974200
Q ss_pred -----Hh--------HHHHHHHHHhc-------------CCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 137 -----AD--------LAVMERDALRM-------------RDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 137 -----~~--------~~~~~~~l~~~-------------np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.. +..+...+.+. ....+++++||++|+|+++|++++...
T Consensus 150 sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~ 215 (594)
T 1g7s_A 150 FSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGL 215 (594)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhh
Confidence 00 11122222221 123489999999999999999988653
No 139
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.23 E-value=1.2e-06 Score=70.65 Aligned_cols=79 Identities=15% Similarity=0.023 Sum_probs=56.1
Q ss_pred ccceEEEEEeCCCCCCCCc-CCCCC-CCceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHH
Q 030407 94 LADYIIYIIDVSGGDKIPR-KGGPG-ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS 171 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~-~~~~q-i~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~ 171 (178)
.+|.++.|+|+..+..... ..... -..+-++|+||+||++. +..+...++.++. +.+++.+||++|.|++++++
T Consensus 23 ~aDvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~--~~~~~~~~~~~~~--g~~~i~iSA~~~~gi~~L~~ 98 (282)
T 1puj_A 23 LIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADA--AVTQQWKEHFENQ--GIRSLSINSVNGQGLNQIVP 98 (282)
T ss_dssp GCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCH--HHHHHHHHHHHTT--TCCEEECCTTTCTTGGGHHH
T ss_pred hCCEEEEEEeCCCCCccCCHHHHHHHCCCCEEEEEECcccCCH--HHHHHHHHHHHhc--CCcEEEEECCCcccHHHHHH
Confidence 4699999999987654321 00011 13467999999999986 5555555555432 34899999999999999998
Q ss_pred HHhhh
Q 030407 172 ITHYI 176 (178)
Q Consensus 172 ~l~~~ 176 (178)
.+.+.
T Consensus 99 ~i~~~ 103 (282)
T 1puj_A 99 ASKEI 103 (282)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 140
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.22 E-value=7.7e-07 Score=74.88 Aligned_cols=103 Identities=13% Similarity=0.053 Sum_probs=65.2
Q ss_pred CCCEEEEeCCcch-hhh-cc-cccccceEEEEEeCCCCCCCCcC----CCCCCCce-eEEEEecCCCCCchhHhHH----
Q 030407 73 KADLLLCESGGDN-LAA-NF-SRELADYIIYIIDVSGGDKIPRK----GGPGITQA-DLLVINKTDLASAIGADLA---- 140 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~~-~~-~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~a-diiviNK~Dl~~~~~~~~~---- 140 (178)
+..+.|++|.|.. ... +. ....+|.+++|+|++++...+.. .......+ -++++||+|+.+.. +..+
T Consensus 74 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~-~~~~~~~~ 152 (405)
T 2c78_A 74 KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDP-ELLDLVEM 152 (405)
T ss_dssp SCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCH-HHHHHHHH
T ss_pred CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcH-HHHHHHHH
Confidence 5789999999931 111 10 11246999999999886532211 01113345 36899999998531 2222
Q ss_pred HHHHHHHhcCC---CCCEEEEecccCCC------------------HHHHHHHHhhh
Q 030407 141 VMERDALRMRD---GGPFIFAQVGWVIG------------------IIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np---~a~i~~~SA~~g~g------------------i~el~~~l~~~ 176 (178)
++.+.++..+. ..+++++||++|.| +++|++.|...
T Consensus 153 ~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 209 (405)
T 2c78_A 153 EVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEY 209 (405)
T ss_dssp HHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhh
Confidence 34455554432 47999999999987 88888887653
No 141
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.22 E-value=7.3e-07 Score=71.88 Aligned_cols=102 Identities=13% Similarity=-0.002 Sum_probs=63.2
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCc---CCCCC-----CCceeEEEEecCCCCCchh----
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIG---- 136 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~---~~~~q-----i~~adiiviNK~Dl~~~~~---- 136 (178)
.+.+.+++|.|..- ...+ ...+|.+++|+|+++...... .+... -..+-++|+||+|+.+...
T Consensus 202 ~~~~~l~Dt~G~~~~~~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 280 (332)
T 2wkq_A 202 PVNLGLWDTAGLEDYDRLRPLS-YPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEK 280 (332)
T ss_dssp EEEEEEEEECCCGGGTTTGGGG-CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHH
T ss_pred EEEEEEEeCCCchhhhHHHHHh-ccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhh
Confidence 34566999999421 1112 224799999999987532211 00000 1456799999999965410
Q ss_pred --------HhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 137 --------ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 137 --------~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
...+...++.+.. ...+++++||++|+|++++++.+.+.
T Consensus 281 ~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~ 327 (332)
T 2wkq_A 281 LKEKKLTPITYPQGLAMAKEI-GAVKYLECSALTQRGLKTVFDEAIRA 327 (332)
T ss_dssp HHHTTCCCCCHHHHHHHHHHT-TCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHc-CCcEEEEecCCCCcCHHHHHHHHHHH
Confidence 1122333344433 22489999999999999999988654
No 142
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.21 E-value=1.5e-06 Score=72.67 Aligned_cols=100 Identities=5% Similarity=-0.009 Sum_probs=62.8
Q ss_pred CCCEEEEeCCcch-h-hhcc-cccccceEEEEEeCCCCCCCCc-C---CCCCCCcee-EEEEe-cCCCCCchhHhHHH--
Q 030407 73 KADLLLCESGGDN-L-AANF-SRELADYIIYIIDVSGGDKIPR-K---GGPGITQAD-LLVIN-KTDLASAIGADLAV-- 141 (178)
Q Consensus 73 ~~d~iiiEttG~~-~-~~~~-~~~~ad~~I~VvD~~~~~~~~~-~---~~~qi~~ad-iiviN-K~Dl~~~~~~~~~~-- 141 (178)
+..+.|+.|.|-. . .... ....+|.+++|+| ..+...+. . .......+. ++++| |+|+ ++ ...+.
T Consensus 59 ~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~--~~~~~~~ 134 (370)
T 2elf_A 59 GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HM--HAIDELK 134 (370)
T ss_dssp SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CH--HHHHHHH
T ss_pred CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CH--HHHHHHH
Confidence 4569999999931 0 0000 1124799999999 65532211 0 011233455 89999 9999 65 44333
Q ss_pred --HHHHHHhcC-CCCCEEE--Eeccc---CCCHHHHHHHHhhh
Q 030407 142 --MERDALRMR-DGGPFIF--AQVGW---VIGIIFTLSITHYI 176 (178)
Q Consensus 142 --~~~~l~~~n-p~a~i~~--~SA~~---g~gi~el~~~l~~~ 176 (178)
+.+.++... ...++++ +||++ |+|+++|++.|.+.
T Consensus 135 ~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~ 177 (370)
T 2elf_A 135 AKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEV 177 (370)
T ss_dssp HHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhh
Confidence 333333322 2469999 99999 99999999987654
No 143
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.20 E-value=5.2e-07 Score=76.68 Aligned_cols=96 Identities=16% Similarity=0.101 Sum_probs=59.1
Q ss_pred CCCEEEEeCCcchh-hhc--ccccccceEEEEEeCCCCCCCCcC----CCCCCCc-eeEEEEecCCCCCchhHhH----H
Q 030407 73 KADLLLCESGGDNL-AAN--FSRELADYIIYIIDVSGGDKIPRK----GGPGITQ-ADLLVINKTDLASAIGADL----A 140 (178)
Q Consensus 73 ~~d~iiiEttG~~~-~~~--~~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~-adiiviNK~Dl~~~~~~~~----~ 140 (178)
+..+.|++|.|..- ... .....+|.+++|+|++++...+.. ....+.. .-++|+||+|+.+...+.. +
T Consensus 103 ~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~ 182 (434)
T 1zun_B 103 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKA 182 (434)
T ss_dssp SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHH
T ss_pred CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHH
Confidence 35689999999310 100 011347999999999886432210 0111223 3588899999986311222 3
Q ss_pred HHHHHHHhcC---CCCCEEEEecccCCCHHH
Q 030407 141 VMERDALRMR---DGGPFIFAQVGWVIGIIF 168 (178)
Q Consensus 141 ~~~~~l~~~n---p~a~i~~~SA~~g~gi~e 168 (178)
++.+.++..+ +..+++++||++|+|+++
T Consensus 183 ~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 183 DYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp HHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred HHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence 3444445444 236899999999999987
No 144
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.19 E-value=1.9e-06 Score=72.39 Aligned_cols=103 Identities=11% Similarity=0.067 Sum_probs=65.4
Q ss_pred CCCCEEEEeCCcch-hhh-c-ccccccceEEEEEeCCCCCCCCcC-C---CCCCCcee-EEEEecCCCCCchhHhH----
Q 030407 72 FKADLLLCESGGDN-LAA-N-FSRELADYIIYIIDVSGGDKIPRK-G---GPGITQAD-LLVINKTDLASAIGADL---- 139 (178)
Q Consensus 72 ~~~d~iiiEttG~~-~~~-~-~~~~~ad~~I~VvD~~~~~~~~~~-~---~~qi~~ad-iiviNK~Dl~~~~~~~~---- 139 (178)
.+..+.|++|.|.. ... + .....+|.+++|+|++++...+.. + ......+. ++++||+|+.+.. +..
T Consensus 64 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~-~~~~~~~ 142 (397)
T 1d2e_A 64 AARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDS-EMVELVE 142 (397)
T ss_dssp SSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCH-HHHHHHH
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCH-HHHHHHH
Confidence 35789999999931 011 1 112247999999999886532210 0 01123443 6899999998531 222
Q ss_pred HHHHHHHHhcCC---CCCEEEEecccCCC----------HHHHHHHHhh
Q 030407 140 AVMERDALRMRD---GGPFIFAQVGWVIG----------IIFTLSITHY 175 (178)
Q Consensus 140 ~~~~~~l~~~np---~a~i~~~SA~~g~g----------i~el~~~l~~ 175 (178)
+++.+.+++..- ..+++++||++|.| +++|++.|.+
T Consensus 143 ~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~ 191 (397)
T 1d2e_A 143 LEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT 191 (397)
T ss_dssp HHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHH
Confidence 344455554431 46999999999774 9999998865
No 145
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.18 E-value=1.5e-06 Score=71.87 Aligned_cols=100 Identities=22% Similarity=0.198 Sum_probs=64.6
Q ss_pred CCEEEEeCCcch--------hhhcccc--cccceEEEEEeCCCC---CCCC---------cCCCC-CCCceeEEEEecCC
Q 030407 74 ADLLLCESGGDN--------LAANFSR--ELADYIIYIIDVSGG---DKIP---------RKGGP-GITQADLLVINKTD 130 (178)
Q Consensus 74 ~d~iiiEttG~~--------~~~~~~~--~~ad~~I~VvD~~~~---~~~~---------~~~~~-qi~~adiiviNK~D 130 (178)
..+.|++|.|.. +...|.. ..++.+++|+|++.. .... ..+.+ ....+-++|+||+|
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~D 285 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMD 285 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTT
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECcc
Confidence 568999999931 1112221 126899999999763 1110 01211 23456799999999
Q ss_pred CCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 131 LASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 131 l~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
+.+. . +.+.+..+.+....+++++||++|+|+++|+++|.+.+
T Consensus 286 l~~~--~--e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l 328 (342)
T 1lnz_A 286 MPEA--A--ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQL 328 (342)
T ss_dssp STTH--H--HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred CCCC--H--HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHH
Confidence 9865 3 22333334444336899999999999999999987654
No 146
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.15 E-value=3e-07 Score=80.07 Aligned_cols=101 Identities=11% Similarity=0.043 Sum_probs=62.2
Q ss_pred CCCEEEEeCCcchh----hhcccccccceEEEEEeCCCCCCCCcCCCCC-----CCceeEEEEecCCCCCchhHhHHHHH
Q 030407 73 KADLLLCESGGDNL----AANFSRELADYIIYIIDVSGGDKIPRKGGPG-----ITQADLLVINKTDLASAIGADLAVME 143 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~~~ad~~I~VvD~~~~~~~~~~~~~q-----i~~adiiviNK~Dl~~~~~~~~~~~~ 143 (178)
+..+.++++.|..- ...+. ..+|.+++|+|++....... +..+ -..+-++|+||+|+.+......+.+.
T Consensus 97 ~~~~~i~Dt~G~e~~~~~~~~~l-~~~d~ii~V~D~s~~~~~~~-~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~ 174 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIMHASHQFFM-TRSSVYMLLLDSRTDSNKHY-WLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKIN 174 (535)
T ss_dssp TCEEEEECCCSCCTTTTTCHHHH-HSSEEEEEEECGGGGGGHHH-HHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHH
T ss_pred eEEEEEEECCcHHHHHHHHHHHc-cCCcEEEEEEeCCCchhHHH-HHHHHHHhCCCCCEEEEEECCCcccccccCHHHHH
Confidence 57899999999311 11122 24699999999976532211 0000 12467999999999865212344555
Q ss_pred HHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 144 RDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 144 ~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
+..... ..+++++||++|+|++++++.+.+.+
T Consensus 175 ~~~~~~--~~~~~~vSA~~g~gi~eL~~~l~~~~ 206 (535)
T 3dpu_A 175 ERFPAI--ENRFHRISCKNGDGVESIAKSLKSAV 206 (535)
T ss_dssp HHCGGG--TTCEEECCC-----CTTHHHHHHHHH
T ss_pred HHHHhc--CCceEEEecCcccCHHHHHHHHHHHH
Confidence 555544 35899999999999999999887643
No 147
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.14 E-value=1.5e-06 Score=65.21 Aligned_cols=102 Identities=13% Similarity=-0.061 Sum_probs=62.2
Q ss_pred CCCCEEEEeCCcchh-hh-----cccccccceEEEEEeCCCCCCCC-cCCC--------CCCCceeEEEEecCCCCCchh
Q 030407 72 FKADLLLCESGGDNL-AA-----NFSRELADYIIYIIDVSGGDKIP-RKGG--------PGITQADLLVINKTDLASAIG 136 (178)
Q Consensus 72 ~~~d~iiiEttG~~~-~~-----~~~~~~ad~~I~VvD~~~~~~~~-~~~~--------~qi~~adiiviNK~Dl~~~~~ 136 (178)
....+.+++|.|..- .. ......+|++++|+|+++..... ..+. ..-..+-++|+||+|+.++
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~-- 144 (196)
T 3llu_A 67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD-- 144 (196)
T ss_dssp TSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH--
T ss_pred CeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch--
Confidence 357899999999311 11 11122479999999998751000 0000 0113467999999999874
Q ss_pred HhH----HH-----HHHHHHhc--CCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 137 ADL----AV-----MERDALRM--RDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 137 ~~~----~~-----~~~~l~~~--np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
... .. ..+..+.. ....+++++||++ +|++++|+.+.+.
T Consensus 145 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 145 DHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHH
T ss_pred hhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHH
Confidence 211 11 11222211 2346899999999 9999999987653
No 148
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.14 E-value=3.6e-07 Score=73.25 Aligned_cols=98 Identities=13% Similarity=0.131 Sum_probs=62.9
Q ss_pred CCCEEEEeCCcch----------hhhcccc-cccceEEEEEeCCCCCCCCcCCCCC---CCceeEEEEecCCCCCch--h
Q 030407 73 KADLLLCESGGDN----------LAANFSR-ELADYIIYIIDVSGGDKIPRKGGPG---ITQADLLVINKTDLASAI--G 136 (178)
Q Consensus 73 ~~d~iiiEttG~~----------~~~~~~~-~~ad~~I~VvD~~~~~~~~~~~~~q---i~~adiiviNK~Dl~~~~--~ 136 (178)
+..+.++.|.|.. +...+.. ..+|.++.|+|+++..... .+..+ ...+.++++||+|+.+.. .
T Consensus 48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~~-~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~ 126 (272)
T 3b1v_A 48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERNL-YLTTQLIETGIPVTIALNMIDVLDGQGKK 126 (272)
T ss_dssp CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHH-HHHHHHHHTCSCEEEEEECHHHHHHTTCC
T ss_pred CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhHH-HHHHHHHhcCCCEEEEEEChhhCCcCCcH
Confidence 5689999999941 1112221 2479999999997643211 01111 345679999999986431 0
Q ss_pred HhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 137 ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 137 ~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+.+.+. +.+ +.+++++||++|+|++++++.+.+.
T Consensus 127 ~~~~~l~---~~l--g~~vi~~SA~~g~gi~el~~~i~~~ 161 (272)
T 3b1v_A 127 INVDKLS---YHL--GVPVVATSALKQTGVDQVVKKAAHT 161 (272)
T ss_dssp CCHHHHH---HHH--TSCEEECBTTTTBSHHHHHHHHHHS
T ss_pred HHHHHHH---HHc--CCCEEEEEccCCCCHHHHHHHHHHH
Confidence 1223333 223 3589999999999999999988764
No 149
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.13 E-value=2.1e-06 Score=64.46 Aligned_cols=100 Identities=12% Similarity=0.080 Sum_probs=59.6
Q ss_pred CCEEEEeCCcchh-----hhcccccccceEEEEEeCCCCCCCCc---------CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 74 ADLLLCESGGDNL-----AANFSRELADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 74 ~d~iiiEttG~~~-----~~~~~~~~ad~~I~VvD~~~~~~~~~---------~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
+.++++.|.|..- ...+ ...+|+.++|+|.++...... .....-..+-++|.||+|+.+......
T Consensus 56 ~~l~~~Dt~~~~~~~~~~~~~~-~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~ 134 (192)
T 2cjw_A 56 ATIILLDMWENKGENEWLHDHC-MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSV 134 (192)
T ss_dssp EEEEEECCCCC----CTTGGGH-HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCH
T ss_pred EEEEEEEeccCcchhhhHHHhh-cccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccH
Confidence 4567788888321 1111 124699999999976432110 000111345699999999964311122
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+......... ..+++++||++|+||+++|+.+.+.
T Consensus 135 ~~~~~~a~~~--~~~~~e~SA~~g~~v~~lf~~l~~~ 169 (192)
T 2cjw_A 135 SEGRAXAVVF--DXKFIETSAAVQHNVKELFEGIVRQ 169 (192)
T ss_dssp HHHHHHHHHT--TCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCceEEeccccCCCHHHHHHHHHHH
Confidence 2222222332 3589999999999999999987653
No 150
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.13 E-value=3.9e-07 Score=72.83 Aligned_cols=102 Identities=16% Similarity=0.022 Sum_probs=59.2
Q ss_pred CCCEEEEeCCcchhh-----------------hcccccccceEE-EEEeCCCCCCCCcC--CCC---CCCceeEEEEecC
Q 030407 73 KADLLLCESGGDNLA-----------------ANFSRELADYII-YIIDVSGGDKIPRK--GGP---GITQADLLVINKT 129 (178)
Q Consensus 73 ~~d~iiiEttG~~~~-----------------~~~~~~~ad~~I-~VvD~~~~~~~~~~--~~~---qi~~adiiviNK~ 129 (178)
.+++.|++|.|..-. ..+. ..++.++ +|+|++........ ... ....+-++|+||+
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~ 202 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFV-TKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKL 202 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHH-TSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHH-cCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEcc
Confidence 379999999994210 0111 1245454 79999765432211 111 1234679999999
Q ss_pred CCCCchhHhHHHHHHHHHhcC-CCCCEEEEecccCCCHHHHHHHHhh
Q 030407 130 DLASAIGADLAVMERDALRMR-DGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 130 Dl~~~~~~~~~~~~~~l~~~n-p~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
|+.++.....+.+...+..+. +..+++++||++|+|++++++.+.+
T Consensus 203 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 203 DLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp GGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred ccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 998651111222221111111 2357899999999999999988653
No 151
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.11 E-value=1.1e-07 Score=69.66 Aligned_cols=101 Identities=17% Similarity=0.169 Sum_probs=61.0
Q ss_pred CCCEEEEeCCcch----------hhhcccc-cccceEEEEEeCCCCCCCCcCCC--CCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDN----------LAANFSR-ELADYIIYIIDVSGGDKIPRKGG--PGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~----------~~~~~~~-~~ad~~I~VvD~~~~~~~~~~~~--~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
+..+-+++|.|.. +...+.. ..++.++.|+|+++......... .....+-++|.||+|+.......
T Consensus 49 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~- 127 (165)
T 2wji_A 49 GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIE- 127 (165)
T ss_dssp TEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCC-
T ss_pred CcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhccccChh-
Confidence 3567889999931 1111211 24689999999976432110000 01235679999999986431000
Q ss_pred HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 140 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 140 ~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
....+..+.. +.+++++||++|+|++++|+++.+.
T Consensus 128 ~~~~~~~~~~--~~~~~~~SA~~~~~v~~l~~~l~~~ 162 (165)
T 2wji_A 128 IDVDKLEKIL--GVKVVPLSAAKKMGIEELKKAISIA 162 (165)
T ss_dssp CCHHHHHHHH--TSCEEECBGGGTBSHHHHHHHHHHH
T ss_pred hHHHHHHHHh--CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 0122222333 2589999999999999999998764
No 152
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.08 E-value=2.9e-07 Score=79.83 Aligned_cols=101 Identities=11% Similarity=0.107 Sum_probs=61.8
Q ss_pred CCCEEEEeCCcch-hhhccc--ccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCchhHhHHHHHHH
Q 030407 73 KADLLLCESGGDN-LAANFS--RELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERD 145 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~~~~~--~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~ 145 (178)
+..+.|++|.|-. ...... ...+|.+++|+|+.++...+.. +......+-++++||+|+.+.... ++.+.
T Consensus 50 ~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~---~v~~~ 126 (501)
T 1zo1_I 50 NGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPD---RVKNE 126 (501)
T ss_dssp SSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCC---CTTCC
T ss_pred CEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHH---HHHHH
Confidence 3467899999921 111111 1246999999999876433211 001123457999999999753111 11111
Q ss_pred HH-------hcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 146 AL-------RMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 146 l~-------~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+. .+....+++++||++|+|+++|++++...
T Consensus 127 l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 127 LSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp CCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred HHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence 11 11123689999999999999999988643
No 153
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.08 E-value=2e-07 Score=81.51 Aligned_cols=105 Identities=12% Similarity=0.065 Sum_probs=63.3
Q ss_pred CCCEEEEeCCcch-hhhcc--cccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCchhHhH-HHHHH
Q 030407 73 KADLLLCESGGDN-LAANF--SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADL-AVMER 144 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~~~~--~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~~~~~-~~~~~ 144 (178)
+..+.|+.|.|-. ..... ....+|.+++|+|+.++...+.. +......+-++++||+|+.+...... +.+.+
T Consensus 51 g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~ 130 (537)
T 3izy_P 51 GEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLA 130 (537)
T ss_dssp SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHH
T ss_pred CCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHh
Confidence 3467899999921 11111 11247999999999886543211 11112345799999999975411111 11111
Q ss_pred H---HHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 145 D---ALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 145 ~---l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
. ...+....+++++||++|+|+++|++.+..++
T Consensus 131 ~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 131 YDVVCEDYGGDVQAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp TTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred hhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence 1 11112235899999999999999999887653
No 154
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.05 E-value=5.3e-06 Score=69.15 Aligned_cols=103 Identities=15% Similarity=0.072 Sum_probs=63.2
Q ss_pred CCEEEEeCCcc-h-----hhhcc-----cccccceEEEEEeCCCCC--CCC-----cC---CCCCCCceeEEEEecCCCC
Q 030407 74 ADLLLCESGGD-N-----LAANF-----SRELADYIIYIIDVSGGD--KIP-----RK---GGPGITQADLLVINKTDLA 132 (178)
Q Consensus 74 ~d~iiiEttG~-~-----~~~~~-----~~~~ad~~I~VvD~~~~~--~~~-----~~---~~~qi~~adiiviNK~Dl~ 132 (178)
..+.++.|.|. . +...| ....+|.+++|+|+++.. ... .. ....-..+-++|.||+|+.
T Consensus 226 ~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~ 305 (364)
T 2qtf_A 226 RKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKI 305 (364)
T ss_dssp EEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGC
T ss_pred EEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCC
Confidence 46788999993 1 01111 112469999999997754 110 00 0011234679999999998
Q ss_pred CchhHh-HHHHHHHHHhc-CCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 133 SAIGAD-LAVMERDALRM-RDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 133 ~~~~~~-~~~~~~~l~~~-np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+....+ .+.+.+..+.+ .+..+++++||++|+|++++++.|.+.
T Consensus 306 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 306 NGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp CSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHH
Confidence 751011 11222233444 344578999999999999999998765
No 155
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.05 E-value=6.1e-06 Score=60.85 Aligned_cols=55 Identities=15% Similarity=0.022 Sum_probs=39.3
Q ss_pred CceeEEEEecCCCCCchhHhHHHHHHHHHhcC-CC----CCEEEEecccCCCHHHHHHHHhhh
Q 030407 119 TQADLLVINKTDLASAIGADLAVMERDALRMR-DG----GPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 119 ~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~n-p~----a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
..+.++|+||+|+.+. . .+...+..+..+ |. .+++++||++|+|++++++++.+.
T Consensus 122 ~~piilv~nK~Dl~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 181 (190)
T 2cxx_A 122 DIPTIVAVNKLDKIKN--V-QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEV 181 (190)
T ss_dssp TCCEEEEEECGGGCSC--H-HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCceEEEeehHhccCc--H-HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHh
Confidence 4567999999999876 3 223333333333 21 358999999999999999988754
No 156
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.04 E-value=1e-06 Score=65.08 Aligned_cols=94 Identities=16% Similarity=0.121 Sum_probs=59.7
Q ss_pred CCEEEEeCCcchh-----h-----hcc-cccccceEEEEEeCCCCCCCCcC-CCC------CCCceeEEEEecCCCCCch
Q 030407 74 ADLLLCESGGDNL-----A-----ANF-SRELADYIIYIIDVSGGDKIPRK-GGP------GITQADLLVINKTDLASAI 135 (178)
Q Consensus 74 ~d~iiiEttG~~~-----~-----~~~-~~~~ad~~I~VvD~~~~~~~~~~-~~~------qi~~adiiviNK~Dl~~~~ 135 (178)
..+.++.|.|..- . ... ....+|.+++|+|+++....... +.. ....+-++|+||+|+.++
T Consensus 52 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~- 130 (172)
T 2gj8_A 52 MPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGE- 130 (172)
T ss_dssp EEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCC-
T ss_pred eEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcc-
Confidence 3477899999410 0 011 12347999999999876543210 000 012457999999999543
Q ss_pred hHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 136 GADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 136 ~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.. + . .+ ....+++++||++|+|++++++.|.+.
T Consensus 131 -~~-~----~-~~-~~~~~~~~~SA~~g~gv~~l~~~l~~~ 163 (172)
T 2gj8_A 131 -TL-G----M-SE-VNGHALIRLSARTGEGVDVLRNHLKQS 163 (172)
T ss_dssp -CC-E----E-EE-ETTEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred -hh-h----h-hh-ccCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 11 0 0 01 124589999999999999999988764
No 157
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.03 E-value=3.9e-06 Score=71.32 Aligned_cols=95 Identities=13% Similarity=0.063 Sum_probs=57.6
Q ss_pred CCCEEEEeCCcch-h---hhcccccccceEEEEEeCCCC-------CCCCc-CC---CCCCCc-eeEEEEecCCCCCch-
Q 030407 73 KADLLLCESGGDN-L---AANFSRELADYIIYIIDVSGG-------DKIPR-KG---GPGITQ-ADLLVINKTDLASAI- 135 (178)
Q Consensus 73 ~~d~iiiEttG~~-~---~~~~~~~~ad~~I~VvD~~~~-------~~~~~-~~---~~qi~~-adiiviNK~Dl~~~~- 135 (178)
+..+.|++|.|.. . ...+ ...+|.+++|+|++++ ...+. .+ ..++.. .-++++||+|+.++.
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~-~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~ 161 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITG-ASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY 161 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHT-SSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred CeEEEEEECCCcHHHHHHHHhh-hhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence 5789999999931 0 1111 2357999999999875 11110 00 011222 247899999998720
Q ss_pred -hHh----HHHHHHHHHhcC--C-CCCEEEEecccCCCHHH
Q 030407 136 -GAD----LAVMERDALRMR--D-GGPFIFAQVGWVIGIIF 168 (178)
Q Consensus 136 -~~~----~~~~~~~l~~~n--p-~a~i~~~SA~~g~gi~e 168 (178)
.+. .+++.+.++... + ..+++++||++|+|+.+
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e 202 (435)
T 1jny_A 162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 202 (435)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccc
Confidence 022 234445554433 2 36899999999999973
No 158
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.03 E-value=2.7e-06 Score=75.40 Aligned_cols=97 Identities=12% Similarity=0.084 Sum_probs=57.4
Q ss_pred CCCEEEEeCCcch--hhhc-ccccccceEEEEEeCCCCCC-------CCc-CC---CCCCCc-eeEEEEecCCCCCchhH
Q 030407 73 KADLLLCESGGDN--LAAN-FSRELADYIIYIIDVSGGDK-------IPR-KG---GPGITQ-ADLLVINKTDLASAIGA 137 (178)
Q Consensus 73 ~~d~iiiEttG~~--~~~~-~~~~~ad~~I~VvD~~~~~~-------~~~-~~---~~qi~~-adiiviNK~Dl~~~~~~ 137 (178)
+..+.|+.|.|.. ...+ .....+|.+++|+|++.+.. .+. .+ ...+.. .-++|+||+|+.+....
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~ 323 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 323 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHH
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHH
Confidence 4578999999931 1111 11235799999999987420 000 00 011222 25888999999873112
Q ss_pred hHHH----HHHHHHhcC---CCCCEEEEecccCCCHHHH
Q 030407 138 DLAV----MERDALRMR---DGGPFIFAQVGWVIGIIFT 169 (178)
Q Consensus 138 ~~~~----~~~~l~~~n---p~a~i~~~SA~~g~gi~el 169 (178)
..+. +...++... +..+++++||++|+|++++
T Consensus 324 ~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 324 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 3333 333333332 1468999999999999854
No 159
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.02 E-value=3.9e-06 Score=69.97 Aligned_cols=77 Identities=19% Similarity=0.166 Sum_probs=50.7
Q ss_pred cceEEEEEeCCCCCCCCcCCCCCC-----CceeEEEEecCCCCCchhHhHHHHHHH----HHhcC-CCCCEEEEecccCC
Q 030407 95 ADYIIYIIDVSGGDKIPRKGGPGI-----TQADLLVINKTDLASAIGADLAVMERD----ALRMR-DGGPFIFAQVGWVI 164 (178)
Q Consensus 95 ad~~I~VvD~~~~~~~~~~~~~qi-----~~adiiviNK~Dl~~~~~~~~~~~~~~----l~~~n-p~a~i~~~SA~~g~ 164 (178)
++.++.|+|+++.... +...+ ..+-++|+||+||.+.. ...+.+.++ .++.+ +..+++.+||++|.
T Consensus 70 ~~~il~VvD~~d~~~~---~~~~l~~~~~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~ 145 (368)
T 3h2y_A 70 DALVVKIVDIFDFNGS---WLPGLHRFVGNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQ 145 (368)
T ss_dssp CCEEEEEEETTSHHHH---CCTTHHHHSSSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCT
T ss_pred CcEEEEEEECCCCccc---HHHHHHHHhCCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCc
Confidence 4789999999864311 11111 34568999999998651 122333333 33322 12379999999999
Q ss_pred CHHHHHHHHhh
Q 030407 165 GIIFTLSITHY 175 (178)
Q Consensus 165 gi~el~~~l~~ 175 (178)
|++++++.+.+
T Consensus 146 gi~~L~~~l~~ 156 (368)
T 3h2y_A 146 GIAELADAIEY 156 (368)
T ss_dssp THHHHHHHHHH
T ss_pred CHHHHHhhhhh
Confidence 99999999865
No 160
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.01 E-value=1e-05 Score=76.22 Aligned_cols=102 Identities=12% Similarity=0.095 Sum_probs=65.0
Q ss_pred CCCEEEEeCCcch-hhh-c-ccccccceEEEEEeCCCCCCCCcC-C---CCCCCce-eEEEEecCCCCCchhHhH----H
Q 030407 73 KADLLLCESGGDN-LAA-N-FSRELADYIIYIIDVSGGDKIPRK-G---GPGITQA-DLLVINKTDLASAIGADL----A 140 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~~-~-~~~~~ad~~I~VvD~~~~~~~~~~-~---~~qi~~a-diiviNK~Dl~~~~~~~~----~ 140 (178)
+..+.|++|.|-. ... + .....+|.+|+|+|++++...+.. + ......+ -++++||+|+.+.. +.. +
T Consensus 358 ~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~-e~le~i~e 436 (1289)
T 3avx_A 358 TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDE-ELLELVEM 436 (1289)
T ss_dssp SCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCH-HHHHHHHH
T ss_pred CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccch-hhHHHHHH
Confidence 4678999999931 010 1 112247999999999887533221 0 0112334 37899999998641 222 3
Q ss_pred HHHHHHHhcC---CCCCEEEEecccC--------CCHHHHHHHHhh
Q 030407 141 VMERDALRMR---DGGPFIFAQVGWV--------IGIIFTLSITHY 175 (178)
Q Consensus 141 ~~~~~l~~~n---p~a~i~~~SA~~g--------~gi~el~~~l~~ 175 (178)
++.+.+++.. ...+++++||++| +|+++|++.|..
T Consensus 437 Ei~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~ 482 (1289)
T 3avx_A 437 EVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDS 482 (1289)
T ss_dssp HHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence 4445555443 2479999999999 579999998875
No 161
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.01 E-value=9.2e-06 Score=67.72 Aligned_cols=81 Identities=16% Similarity=0.013 Sum_probs=52.3
Q ss_pred ccceEEEEEeCCCCCCCCcC-CCCCC-CceeEEEEecCCCCCchhHhHHHHHHH----HHhcC-CCCCEEEEecccCCCH
Q 030407 94 LADYIIYIIDVSGGDKIPRK-GGPGI-TQADLLVINKTDLASAIGADLAVMERD----ALRMR-DGGPFIFAQVGWVIGI 166 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~~-~~~qi-~~adiiviNK~Dl~~~~~~~~~~~~~~----l~~~n-p~a~i~~~SA~~g~gi 166 (178)
.++.++.|+|+++....... ....+ ..+-++|+||+||.+.. ...+.+.++ .++.. +..+++.+||++|.|+
T Consensus 71 ~~~lil~VvD~~d~~~s~~~~l~~~l~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi 149 (369)
T 3ec1_A 71 SKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNKADLLPRS-VKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGM 149 (369)
T ss_dssp HCCEEEEEEETTCSGGGCCSSHHHHCTTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTH
T ss_pred cCcEEEEEEECCCCCCchhhHHHHHhCCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCH
Confidence 35789999999876532110 00011 34568999999998651 112333444 33322 1137999999999999
Q ss_pred HHHHHHHhh
Q 030407 167 IFTLSITHY 175 (178)
Q Consensus 167 ~el~~~l~~ 175 (178)
++|++.+.+
T Consensus 150 ~~L~~~I~~ 158 (369)
T 3ec1_A 150 AKVMEAINR 158 (369)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999865
No 162
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.99 E-value=1.1e-05 Score=72.55 Aligned_cols=103 Identities=10% Similarity=-0.009 Sum_probs=63.4
Q ss_pred CCEEEEeCCcchhhhc------ccccccceEEEEEeCCCCCCCCcC-----CCCCCCceeEEEEecCCCCCch---hH--
Q 030407 74 ADLLLCESGGDNLAAN------FSRELADYIIYIIDVSGGDKIPRK-----GGPGITQADLLVINKTDLASAI---GA-- 137 (178)
Q Consensus 74 ~d~iiiEttG~~~~~~------~~~~~ad~~I~VvD~~~~~~~~~~-----~~~qi~~adiiviNK~Dl~~~~---~~-- 137 (178)
.++.||+|.|..-... .....+|.+++|+|++++...... .......+.++|+||+|+.+.. .+
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~ 253 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDV 253 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCH
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccccccChhhH
Confidence 5899999999432110 011247999999999876432110 1111234579999999997541 01
Q ss_pred -hHHH----HH----HHHHhcC-------CCCCEEEEecc--------------cCCCHHHHHHHHhhh
Q 030407 138 -DLAV----ME----RDALRMR-------DGGPFIFAQVG--------------WVIGIIFTLSITHYI 176 (178)
Q Consensus 138 -~~~~----~~----~~l~~~n-------p~a~i~~~SA~--------------~g~gi~el~~~l~~~ 176 (178)
+++. +. ..+.... ...+++++||+ +|.|++++++.+.++
T Consensus 254 e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~ 322 (695)
T 2j69_A 254 EELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTF 322 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHH
Confidence 1221 22 1222221 23489999999 999999999988764
No 163
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.98 E-value=4.1e-07 Score=80.37 Aligned_cols=104 Identities=14% Similarity=0.097 Sum_probs=55.7
Q ss_pred CCCEEEEeCCcch-hh-hc-ccccccceEEEEEeCCCCC-------CCCc-CC---CCCCCce-eEEEEecCCCCCchhH
Q 030407 73 KADLLLCESGGDN-LA-AN-FSRELADYIIYIIDVSGGD-------KIPR-KG---GPGITQA-DLLVINKTDLASAIGA 137 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~-~~-~~~~~ad~~I~VvD~~~~~-------~~~~-~~---~~qi~~a-diiviNK~Dl~~~~~~ 137 (178)
+..+.||.|.|.. .. .+ .....+|.+|+|+|++.+. ..+. .+ ...+..+ -++|+||+|+.+...+
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~ 333 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSED 333 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHH
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHH
Confidence 4678899999921 00 00 1112469999999998753 1110 00 0112333 5779999999863114
Q ss_pred hHHHHHHHHHhcC--------CCCCEEEEecccCCCHH--------------HHHHHHhhh
Q 030407 138 DLAVMERDALRMR--------DGGPFIFAQVGWVIGII--------------FTLSITHYI 176 (178)
Q Consensus 138 ~~~~~~~~l~~~n--------p~a~i~~~SA~~g~gi~--------------el~~~l~~~ 176 (178)
..+.+.+.++... ...+++++||++|.|+. .|++.|..+
T Consensus 334 ~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~ 394 (592)
T 3mca_A 334 RFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQL 394 (592)
T ss_dssp HHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhh
Confidence 4444444444322 13479999999999998 788887654
No 164
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.96 E-value=4.3e-06 Score=71.03 Aligned_cols=98 Identities=15% Similarity=0.037 Sum_probs=60.5
Q ss_pred CCCEEEEeCCcchh----------hh--cccccccceEEEEEeCCCCCCCCcC-CCCC---CCceeEEEEecCCCCCchh
Q 030407 73 KADLLLCESGGDNL----------AA--NFSRELADYIIYIIDVSGGDKIPRK-GGPG---ITQADLLVINKTDLASAIG 136 (178)
Q Consensus 73 ~~d~iiiEttG~~~----------~~--~~~~~~ad~~I~VvD~~~~~~~~~~-~~~q---i~~adiiviNK~Dl~~~~~ 136 (178)
+..+.++.|.|..- .. ......+|.+++|+|++.+...... .... ...+-++|+||+|+.+.
T Consensus 48 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~-- 125 (439)
T 1mky_A 48 GKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE-- 125 (439)
T ss_dssp TEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH--
T ss_pred CeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc--
Confidence 34578999999421 00 0112357999999999876432210 1111 23457999999998532
Q ss_pred HhHHHH-HHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 137 ADLAVM-ERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 137 ~~~~~~-~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
.. ... .+. .++ ...+++++||++|.|++++++.+.+
T Consensus 126 ~~-~~~~~~~-~~l-g~~~~~~iSA~~g~gv~~L~~~i~~ 162 (439)
T 1mky_A 126 FE-REVKPEL-YSL-GFGEPIPVSAEHNINLDTMLETIIK 162 (439)
T ss_dssp HH-HHTHHHH-GGG-SSCSCEECBTTTTBSHHHHHHHHHH
T ss_pred cH-HHHHHHH-Hhc-CCCCEEEEeccCCCCHHHHHHHHHH
Confidence 11 222 222 222 2337899999999999999998754
No 165
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.95 E-value=6e-07 Score=76.35 Aligned_cols=98 Identities=12% Similarity=-0.042 Sum_probs=61.6
Q ss_pred CEEEEeCCcchhhhc----------ccccccceEEEEEeCCCCCCCCcCC---CCCCCceeEEEEecCCCCCchhHhHHH
Q 030407 75 DLLLCESGGDNLAAN----------FSRELADYIIYIIDVSGGDKIPRKG---GPGITQADLLVINKTDLASAIGADLAV 141 (178)
Q Consensus 75 d~iiiEttG~~~~~~----------~~~~~ad~~I~VvD~~~~~~~~~~~---~~qi~~adiiviNK~Dl~~~~~~~~~~ 141 (178)
.+.|+.|.|..--.. .....+|.+++|+|+.. ......+ ......+-++|+||+|+.++ ...+.
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~-~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~--~~~~~ 160 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAP-TPYEDDVVNLFKEMEIPFVVVVNKIDVLGE--KAEEL 160 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSC-CHHHHHHHHHHHHTTCCEEEECCCCTTTTC--CCTHH
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCC-hHHHHHHHHHHHhcCCCEEEEEeCcCCCCc--cHHHH
Confidence 688999999310000 01124799999999822 1111111 01124567999999999877 33322
Q ss_pred HHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 142 MERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 142 ~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
. +.+.+. -+.+++++||++|+|++++++.|.+.+
T Consensus 161 ~-~~l~~~-~g~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 161 K-GLYESR-YEAKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp H-HHSSCC-TTCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred H-HHHHHH-cCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 2 222222 246899999999999999999987654
No 166
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.95 E-value=6.8e-07 Score=70.31 Aligned_cols=103 Identities=6% Similarity=0.006 Sum_probs=60.9
Q ss_pred CCCEEEEeCCcchh------------hhcc--cccccceEEEEEeCCCCCCCCcC--------CCCCCCceeEEEEe-cC
Q 030407 73 KADLLLCESGGDNL------------AANF--SRELADYIIYIIDVSGGDKIPRK--------GGPGITQADLLVIN-KT 129 (178)
Q Consensus 73 ~~d~iiiEttG~~~------------~~~~--~~~~ad~~I~VvD~~~~~~~~~~--------~~~qi~~adiiviN-K~ 129 (178)
+..+.|++|.|..- ...+ ....+|++++|+|+++....... +......+.++++| |+
T Consensus 70 ~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~ 149 (260)
T 2xtp_A 70 NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKE 149 (260)
T ss_dssp TEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGG
T ss_pred CCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEccc
Confidence 56799999999421 0000 11347999999999852211110 01112346788888 99
Q ss_pred CCCCchhHh-H-----HHHHHHHHhcCC----CCCEEEEecccCCCHHHHHHHHhhh
Q 030407 130 DLASAIGAD-L-----AVMERDALRMRD----GGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 130 Dl~~~~~~~-~-----~~~~~~l~~~np----~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
|+.+..... + +.+.+.++.... ..+ +++||++|.|++++++.+.+.
T Consensus 150 Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~ 205 (260)
T 2xtp_A 150 DLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNN-RAEGSNQDDQVKELMDCIEDL 205 (260)
T ss_dssp GGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCccHHHHHHhcchHHHHHHHHHhCCeEEEecC-cccccccHHHHHHHHHHHHHH
Confidence 998541010 0 112334444332 223 889999999999999988764
No 167
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.92 E-value=4.4e-06 Score=72.48 Aligned_cols=160 Identities=14% Similarity=0.121 Sum_probs=88.6
Q ss_pred HHHHHHhhc-CCcEEEEEecCC-C-chhHHH--HHHcCCCCccceeecccCCCcccccccccccCH-hHHHhhHhhCCCC
Q 030407 2 LALCKFLRD-KYSLAAVTNDIF-T-KEDGEF--LMRNGALPEERIRAVETGGCPHAAIREDISINL-GPLEELSNLFKAD 75 (178)
Q Consensus 2 ~~~~~~~~~-~~~vaVI~nd~g-~-~iD~~l--i~~~~~~~~~~~~~l~~GcCc~l~i~~dl~~~l-~~l~~l~~~~~~d 75 (178)
.+++.++.+ ++|++++-.|.. . .+|..- -...++ ++....++. |....+ .++..+ ...++|
T Consensus 119 ~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i----~v~~~~~~~--------dp~~i~~~al~~~-~~~~~D 185 (504)
T 2j37_W 119 SKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARI----PFYGSYTEM--------DPVIIASEGVEKF-KNENFE 185 (504)
T ss_dssp HHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTC----CEEECCCCS--------CHHHHHHHHHHHH-HHTTCC
T ss_pred HHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCc----eEEccCCCC--------CHHHHHHHHHHHH-HHCCCc
Confidence 356666655 599999999987 4 233211 122233 333322211 111111 334433 236899
Q ss_pred EEEEeCCcchhh-hcc--------cccccceEEEEEeCCCCCCCCcCCCCCCC--ce-eEEEEecCCCCCchhHhHHHHH
Q 030407 76 LLLCESGGDNLA-ANF--------SRELADYIIYIIDVSGGDKIPRKGGPGIT--QA-DLLVINKTDLASAIGADLAVME 143 (178)
Q Consensus 76 ~iiiEttG~~~~-~~~--------~~~~ad~~I~VvD~~~~~~~~~~~~~qi~--~a-diiviNK~Dl~~~~~~~~~~~~ 143 (178)
++||+|.|.... ..+ ....+|.+++|+|+..+.+... ....+. .+ +.+|+||+|........+. +.
T Consensus 186 vvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~-~a~~~~~~~~i~gvVlNK~D~~~~~g~~l~-~~ 263 (504)
T 2j37_W 186 IIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA-QAKAFKDKVDVASVIVTKLDGHAKGGGALS-AV 263 (504)
T ss_dssp EEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH-HHHHHHHHHCCCCEEEECTTSCCCCTHHHH-HH
T ss_pred EEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH-HHHHHHhhcCceEEEEeCCccccchHHHHH-HH
Confidence 999999994211 010 0113588999999987643211 111121 23 5899999999765212222 22
Q ss_pred HHH-------------HhcCCCCCEEEEecccCCC-HHHHHHHHhhh
Q 030407 144 RDA-------------LRMRDGGPFIFAQVGWVIG-IIFTLSITHYI 176 (178)
Q Consensus 144 ~~l-------------~~~np~a~i~~~SA~~g~g-i~el~~~l~~~ 176 (178)
+.. ..+.|..+.+++|+++|.| +++|++++.+.
T Consensus 264 ~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 264 AATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp HHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred HHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 111 1223445667789999999 99999988754
No 168
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.91 E-value=3e-06 Score=71.96 Aligned_cols=98 Identities=16% Similarity=0.099 Sum_probs=56.7
Q ss_pred CCCEEEEeCCcch---------hhhc--ccccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCchhH
Q 030407 73 KADLLLCESGGDN---------LAAN--FSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGA 137 (178)
Q Consensus 73 ~~d~iiiEttG~~---------~~~~--~~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~~~ 137 (178)
+..+.+++|.|.. +... .....+|.+++|+|++.+...... .......+-++|+||+|+.+. .
T Consensus 50 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~--~ 127 (436)
T 2hjg_A 50 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEM--R 127 (436)
T ss_dssp SSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC------
T ss_pred CceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccc--h
Confidence 4678999999942 1110 111247999999999876543211 111234567999999999754 2
Q ss_pred hHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 138 DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 138 ~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
. ...+.. ++ ...+++++||++|.|+++|++.+.+.
T Consensus 128 ~--~~~~~~-~l-g~~~~~~iSA~~g~gv~~L~~~i~~~ 162 (436)
T 2hjg_A 128 A--NIYDFY-SL-GFGEPYPISGTHGLGLGDLLDAVAEH 162 (436)
T ss_dssp ---CCCSSG-GG-SSCCCEECBTTTTBTHHHHHHHHHHT
T ss_pred h--hHHHHH-Hc-CCCCeEEEeCcCCCChHHHHHHHHHh
Confidence 1 111111 22 22378999999999999999987653
No 169
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.89 E-value=3.6e-06 Score=72.26 Aligned_cols=98 Identities=14% Similarity=0.078 Sum_probs=56.7
Q ss_pred CCCEEEEeCCcch-hhhcc--cccccceEEEEEeCCCCCC-------CCc-CC---CCCCCce-eEEEEecCCCCCch--
Q 030407 73 KADLLLCESGGDN-LAANF--SRELADYIIYIIDVSGGDK-------IPR-KG---GPGITQA-DLLVINKTDLASAI-- 135 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~~~~--~~~~ad~~I~VvD~~~~~~-------~~~-~~---~~qi~~a-diiviNK~Dl~~~~-- 135 (178)
+..+.|++|.|-. ..... ....+|.+|+|+|++++.. .+. .+ ......+ -++++||+|+.+..
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence 4568899999921 00111 1124699999999988631 010 00 0112334 58899999996420
Q ss_pred hHhH----HHHHHHHHhc-C-C---CCCEEEEecccCCCHHHHH
Q 030407 136 GADL----AVMERDALRM-R-D---GGPFIFAQVGWVIGIIFTL 170 (178)
Q Consensus 136 ~~~~----~~~~~~l~~~-n-p---~a~i~~~SA~~g~gi~el~ 170 (178)
.+.. +++.+.++.. . + ..+++++||++|+|+.+++
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 0222 2344555443 1 1 4689999999999998643
No 170
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.89 E-value=5.6e-06 Score=61.43 Aligned_cols=101 Identities=13% Similarity=0.091 Sum_probs=58.9
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCC-CCc--CC-C---CC-CCceeEEEEecCCCCCchhHhHH
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDK-IPR--KG-G---PG-ITQADLLVINKTDLASAIGADLA 140 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~-~~~--~~-~---~q-i~~adiiviNK~Dl~~~~~~~~~ 140 (178)
...+-+++|.|.. +...+. ..++.+++|+|.+++.. ... .+ . .. -..+-++|.||+|+.+. ....
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~-~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~ 131 (184)
T 2zej_A 55 DLVLNVWDFAGREEFYSTHPHFM-TQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDE--KQRK 131 (184)
T ss_dssp -CEEEEEEECSHHHHHTTSHHHH-HHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCH--HHHH
T ss_pred ceEEEEEecCCCHHHHHhhHHHc-cCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccc--hhhH
Confidence 5678899999932 111111 23688889999877531 110 00 0 00 13456888899999765 3322
Q ss_pred H-HHHHHHhcC--CCCC----EEEEecccCC-CHHHHHHHHhhh
Q 030407 141 V-MERDALRMR--DGGP----FIFAQVGWVI-GIIFTLSITHYI 176 (178)
Q Consensus 141 ~-~~~~l~~~n--p~a~----i~~~SA~~g~-gi~el~~~l~~~ 176 (178)
. .....+.+. -..+ ++++||++|. |+++|++.+.+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~ 175 (184)
T 2zej_A 132 ACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINE 175 (184)
T ss_dssp HHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHH
Confidence 1 111112221 1234 8999999996 999999987653
No 171
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.84 E-value=4.5e-05 Score=59.20 Aligned_cols=82 Identities=7% Similarity=-0.029 Sum_probs=53.1
Q ss_pred ccceEEEEEeCCCCCCCCcC---------C-CCC-C-CceeEEEEecC-CCCCchhHhHHHHHHHHH--hcCCCCCEEEE
Q 030407 94 LADYIIYIIDVSGGDKIPRK---------G-GPG-I-TQADLLVINKT-DLASAIGADLAVMERDAL--RMRDGGPFIFA 158 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~~---------~-~~q-i-~~adiiviNK~-Dl~~~~~~~~~~~~~~l~--~~np~a~i~~~ 158 (178)
..|++|+|||+++......+ . .+. + ..+-+|+.||. |+..+ -...++.+.+. .+.....|..+
T Consensus 125 ~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~e~L~L~~l~R~W~Iq~c 202 (227)
T 3l82_B 125 VVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAHELHLNLLNHPWLVQDT 202 (227)
T ss_dssp HCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHHHHTTGGGGCSCEEEEEE
T ss_pred CCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHHHHcCCcCCCCCEEEEEe
Confidence 47999999999865322110 0 111 2 23567777996 78655 33344444432 23334589999
Q ss_pred ecccCCCHHHHHHHHhhhh
Q 030407 159 QVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 159 SA~~g~gi~el~~~l~~~~ 177 (178)
||++|+|+.|-++||.+.+
T Consensus 203 sA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 203 EAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp ETTTCTTHHHHHHHHTTTT
T ss_pred ECCCCcCHHHHHHHHHHHH
Confidence 9999999999999997654
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.83 E-value=2.2e-06 Score=73.38 Aligned_cols=96 Identities=15% Similarity=0.035 Sum_probs=56.9
Q ss_pred CCCEEEEeCCcch-hhh-c-ccccccceEEEEEeCCCCCCC-------Cc-CC---CCCCCce-eEEEEecCCCCCchhH
Q 030407 73 KADLLLCESGGDN-LAA-N-FSRELADYIIYIIDVSGGDKI-------PR-KG---GPGITQA-DLLVINKTDLASAIGA 137 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~~-~-~~~~~ad~~I~VvD~~~~~~~-------~~-~~---~~qi~~a-diiviNK~Dl~~~~~~ 137 (178)
+..+.|++|.|-. ... . .....+|.+++|+|++++... +. .+ ......+ -++++||+|+.+...+
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~ 163 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDES 163 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHH
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHH
Confidence 4679999999931 000 0 112347999999999865210 10 00 0112333 5788999999842113
Q ss_pred hHH----HHHHHHHhcCC---CCCEEEEecccCCCHHH
Q 030407 138 DLA----VMERDALRMRD---GGPFIFAQVGWVIGIIF 168 (178)
Q Consensus 138 ~~~----~~~~~l~~~np---~a~i~~~SA~~g~gi~e 168 (178)
..+ ++.+.++...- ..+++++||++|+|+.+
T Consensus 164 ~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 164 RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred HHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 333 33444444331 37999999999999863
No 173
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.83 E-value=6.6e-07 Score=66.26 Aligned_cols=101 Identities=16% Similarity=0.124 Sum_probs=61.7
Q ss_pred CCCEEEEeCCcch----------hhhcccc-cccceEEEEEeCCCCCCCCcCC--CCCCCceeEEEEecCCCCCchhHhH
Q 030407 73 KADLLLCESGGDN----------LAANFSR-ELADYIIYIIDVSGGDKIPRKG--GPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 73 ~~d~iiiEttG~~----------~~~~~~~-~~ad~~I~VvD~~~~~~~~~~~--~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
+..+.+++|.|.. +...+.. ..++.++.|+|++......... ......+.++|+||+|+.+. ...
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~ 130 (188)
T 2wjg_A 53 GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKS--LGI 130 (188)
T ss_dssp TEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHHHH--TTC
T ss_pred CcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhcccc--ccc
Confidence 4678899999941 1111211 1368999999987532111000 00123467999999998643 111
Q ss_pred -HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhhh
Q 030407 140 -AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 140 -~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~~ 177 (178)
+...+..+..+ .+++++||++|+|++++++++.+.+
T Consensus 131 ~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~i~~~~ 167 (188)
T 2wjg_A 131 EIDVDKLEKILG--VKVVPLSAAKKMGIEELKKAISIAV 167 (188)
T ss_dssp CCCHHHHHHHHT--SCEEECBGGGTBSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhC--CCeEEEEecCCCCHHHHHHHHHHHH
Confidence 12222333332 5899999999999999999887653
No 174
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.82 E-value=1.1e-05 Score=70.56 Aligned_cols=112 Identities=15% Similarity=0.179 Sum_probs=61.1
Q ss_pred EEEEEecCC-CchhHHHHHHcCCCCccceeec-------ccCC-CcccccccccccCHhHHHhhHhhCCCCEEEEeCCcc
Q 030407 14 LAAVTNDIF-TKEDGEFLMRNGALPEERIRAV-------ETGG-CPHAAIREDISINLGPLEELSNLFKADLLLCESGGD 84 (178)
Q Consensus 14 vaVI~nd~g-~~iD~~li~~~~~~~~~~~~~l-------~~Gc-Cc~l~i~~dl~~~l~~l~~l~~~~~~d~iiiEttG~ 84 (178)
.+++.|+++ +..|..++..... .+.++ .+|| ||++ ++++ . ..++||+|.|.
T Consensus 105 ~~i~~~~~~~i~~g~~l~~~~~~----~~~~L~~~g~~~~~~~~~~~~--~~~l----------l----~~l~lIDTPG~ 164 (550)
T 2qpt_A 105 VAVMHGETEGTVPGNALVVDPEK----PFRKLNPFGNTFLNRFMCAQL--PNQV----------L----ESISIIDTPGI 164 (550)
T ss_dssp EEEECCSSSEEECCC----------------------CCCTTEEEEEC--CCHH----------H----HHCEEEECCCB
T ss_pred EEEEECCcccccCCceeeecCcc----cHHHHhhhcccccccceEEec--cccc----------c----CCEEEEECcCC
Confidence 577778877 6666655432211 23333 3789 8875 2211 1 14689999995
Q ss_pred hhh------hc--c------cccccceEEEEEeCCCCCCCC--c---CCCCCCCceeEEEEecCCCCCchhHhHHHHHHH
Q 030407 85 NLA------AN--F------SRELADYIIYIIDVSGGDKIP--R---KGGPGITQADLLVINKTDLASAIGADLAVMERD 145 (178)
Q Consensus 85 ~~~------~~--~------~~~~ad~~I~VvD~~~~~~~~--~---~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~ 145 (178)
.-. .. + ....+|.+++|+|+++..... . ....+...+.++|+||+|+.++ .++..+.+.
T Consensus 165 ~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~--~el~~~~~~ 242 (550)
T 2qpt_A 165 LSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVET--QQLMRVYGA 242 (550)
T ss_dssp CC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCH--HHHHHHHHH
T ss_pred CCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCH--HHHHHHHHH
Confidence 210 00 1 012369999999997632111 0 1112344578999999999987 666666655
Q ss_pred HH
Q 030407 146 AL 147 (178)
Q Consensus 146 l~ 147 (178)
++
T Consensus 243 l~ 244 (550)
T 2qpt_A 243 LM 244 (550)
T ss_dssp HH
T ss_pred hh
Confidence 53
No 175
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.81 E-value=1.5e-05 Score=63.28 Aligned_cols=78 Identities=12% Similarity=-0.023 Sum_probs=41.4
Q ss_pred cceEEEEEeCCC-CCCCCc-----CCCCCCCceeEEEEecCCCCCchhHhHHHHHHHHHhc--CCCCCEEEEecccCCCH
Q 030407 95 ADYIIYIIDVSG-GDKIPR-----KGGPGITQADLLVINKTDLASAIGADLAVMERDALRM--RDGGPFIFAQVGWVIGI 166 (178)
Q Consensus 95 ad~~I~VvD~~~-~~~~~~-----~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~~--np~a~i~~~SA~~g~gi 166 (178)
+|.++++++++. +..... .... ..+-++|+||+|+.++ .+.+...+.+++. ....+++.+||++|+|+
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~--~~pvi~V~nK~D~~~~--~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~ 191 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLHE--KVNIIPLIAKADTLTP--EECQQFKKQIMKEIQEHKIKIYEFPETDDEEE 191 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHTT--TSCEEEEESSGGGSCH--HHHHHHHHHHHHHHHHTTCCCCCC--------
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHhc--cCCEEEEEeccCCCCH--HHHHHHHHHHHHHHHHcCCeEEcCCCCCChhH
Confidence 468888887654 221111 0111 4567999999999877 5665544433322 23468999999999999
Q ss_pred HHHHHHHhhh
Q 030407 167 IFTLSITHYI 176 (178)
Q Consensus 167 ~el~~~l~~~ 176 (178)
+++++.|...
T Consensus 192 ~~l~~~l~~~ 201 (274)
T 3t5d_A 192 NKLVKKIKDR 201 (274)
T ss_dssp ---CHHHHHT
T ss_pred HHHHHHHhcC
Confidence 9999988653
No 176
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.81 E-value=1.1e-05 Score=60.05 Aligned_cols=101 Identities=13% Similarity=-0.018 Sum_probs=64.0
Q ss_pred CCCEEEEeCCcchhh---hcccccccceEEEEEeCCCCCCCCc--CCCC----C-----CCceeEEEEecCCCCCchhHh
Q 030407 73 KADLLLCESGGDNLA---ANFSRELADYIIYIIDVSGGDKIPR--KGGP----G-----ITQADLLVINKTDLASAIGAD 138 (178)
Q Consensus 73 ~~d~iiiEttG~~~~---~~~~~~~ad~~I~VvD~~~~~~~~~--~~~~----q-----i~~adiiviNK~Dl~~~~~~~ 138 (178)
.+.+.|++|.|..-- ..+. ..+|.+++|+|+++...... .+.. . -..+-++|+||+|+.+.....
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~~~~-~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~ 146 (187)
T 3c5c_A 68 PVHLRVMDTADLDTPRNCERYL-NWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVT 146 (187)
T ss_dssp EEEEEEEECCC---CCCTHHHH-TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSC
T ss_pred EEEEEEEECCCCCcchhHHHHH-hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccC
Confidence 466788999993210 1111 24799999999986432211 0000 0 134569999999996531122
Q ss_pred HHHHHHHHHhcCCCCCEEEEec-ccCCCHHHHHHHHhhh
Q 030407 139 LAVMERDALRMRDGGPFIFAQV-GWVIGIIFTLSITHYI 176 (178)
Q Consensus 139 ~~~~~~~l~~~np~a~i~~~SA-~~g~gi~el~~~l~~~ 176 (178)
.+...+..++.+ .+++++|| ++|+|++++|+.+.+.
T Consensus 147 ~~~~~~~~~~~~--~~~~e~Sa~~~g~gv~~lf~~l~~~ 183 (187)
T 3c5c_A 147 KAEGVALAGRFG--CLFFEVSACLDFEHVQHVFHEAVRE 183 (187)
T ss_dssp HHHHHHHHHHHT--CEEEECCSSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CcEEEEeecCccccHHHHHHHHHHH
Confidence 344555555553 58999999 8999999999988654
No 177
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.76 E-value=8.8e-06 Score=65.46 Aligned_cols=104 Identities=13% Similarity=-0.011 Sum_probs=58.0
Q ss_pred CCCEEEEeCCcchhhh----------cc------cccccceEEEEEeCCC-CCCCCc--C---CCCCCCceeEEEEecCC
Q 030407 73 KADLLLCESGGDNLAA----------NF------SRELADYIIYIIDVSG-GDKIPR--K---GGPGITQADLLVINKTD 130 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~----------~~------~~~~ad~~I~VvD~~~-~~~~~~--~---~~~qi~~adiiviNK~D 130 (178)
.++++|++|.|..-.+ .+ ....+|.+++|+|+.. +..... . .......+.++|+||+|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~D 209 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLD 209 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTT
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcc
Confidence 4789999999942100 01 1124689999999743 221111 0 11123456799999999
Q ss_pred CCCchhHhHHHHHHHHHhc-CCCCCEEEEeccc---CCCHHHHHHHHhhh
Q 030407 131 LASAIGADLAVMERDALRM-RDGGPFIFAQVGW---VIGIIFTLSITHYI 176 (178)
Q Consensus 131 l~~~~~~~~~~~~~~l~~~-np~a~i~~~SA~~---g~gi~el~~~l~~~ 176 (178)
+.++.....+.+...+... .+..++..+||++ |.|++++++.+.++
T Consensus 210 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~ 259 (315)
T 1jwy_B 210 LMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILY 259 (315)
T ss_dssp SSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHH
T ss_pred cCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHH
Confidence 9876211122222111111 1223555567777 89999999887654
No 178
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.73 E-value=2.9e-06 Score=70.09 Aligned_cols=99 Identities=12% Similarity=-0.069 Sum_probs=58.0
Q ss_pred CCCEEEEeCCcchh-----------------hhcccccccceEEEEEeCCCCCCCCcC--CCC---CCCceeEEEEecCC
Q 030407 73 KADLLLCESGGDNL-----------------AANFSRELADYIIYIIDVSGGDKIPRK--GGP---GITQADLLVINKTD 130 (178)
Q Consensus 73 ~~d~iiiEttG~~~-----------------~~~~~~~~ad~~I~VvD~~~~~~~~~~--~~~---qi~~adiiviNK~D 130 (178)
.+++.||+|.|..- ...|.....+.+++|+|+......... ... ....+-++|+||+|
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~D 208 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLD 208 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGG
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEecccc
Confidence 47899999999521 011122223566777887653222110 100 11335699999999
Q ss_pred CCCchhHhHHHHHHHHHh-cCC----CCCEEEEecccCCCHHHHHHHHhh
Q 030407 131 LASAIGADLAVMERDALR-MRD----GGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 131 l~~~~~~~~~~~~~~l~~-~np----~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
+.++ ... ....++. ..+ ..+++.+||++|+|++++++.+.+
T Consensus 209 l~~~--~~~--~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 209 LMDE--GTD--ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp GSCT--TCC--CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred ccCc--chh--HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 9865 220 1112221 112 347889999999999999988754
No 179
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.72 E-value=5.7e-06 Score=67.53 Aligned_cols=75 Identities=11% Similarity=0.036 Sum_probs=51.8
Q ss_pred cceEEEEEeCCCCCCCCcCCCC------CCCceeEEEEecCCCCCchhHh----HHHHHHHHHhcCCCCCEEEEecccCC
Q 030407 95 ADYIIYIIDVSGGDKIPRKGGP------GITQADLLVINKTDLASAIGAD----LAVMERDALRMRDGGPFIFAQVGWVI 164 (178)
Q Consensus 95 ad~~I~VvD~~~~~~~~~~~~~------qi~~adiiviNK~Dl~~~~~~~----~~~~~~~l~~~np~a~i~~~SA~~g~ 164 (178)
+|.++.|+|+..+......... .-...-+||+||+||.++ .+ ++.+.+..+.. +.+++.+||++|.
T Consensus 87 vD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~--~~~~~~~~~~~~~y~~~--g~~v~~~sa~~~~ 162 (307)
T 1t9h_A 87 VDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIED--QDTEDTIQAYAEDYRNI--GYDVYLTSSKDQD 162 (307)
T ss_dssp CCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCC--HHHHHHHHHHHHHHHHH--TCCEEECCHHHHT
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCch--hhhHHHHHHHHHHHHhC--CCeEEEEecCCCC
Confidence 5999999999866533221111 123356999999999987 44 34455555443 4589999999999
Q ss_pred CHHHHHHHH
Q 030407 165 GIIFTLSIT 173 (178)
Q Consensus 165 gi~el~~~l 173 (178)
|+++|++..
T Consensus 163 g~~~L~~~~ 171 (307)
T 1t9h_A 163 SLADIIPHF 171 (307)
T ss_dssp TCTTTGGGG
T ss_pred CHHHHHhhc
Confidence 999887654
No 180
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.72 E-value=2.9e-05 Score=58.38 Aligned_cols=82 Identities=10% Similarity=-0.043 Sum_probs=54.9
Q ss_pred ccceEEEEEeCCCCCCCCc-C---CCCCCCceeEEEEecCCCCCchhHhH----HHHHHHHHhcCCCCCEEEEecccCCC
Q 030407 94 LADYIIYIIDVSGGDKIPR-K---GGPGITQADLLVINKTDLASAIGADL----AVMERDALRMRDGGPFIFAQVGWVIG 165 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~-~---~~~qi~~adiiviNK~Dl~~~~~~~~----~~~~~~l~~~np~a~i~~~SA~~g~g 165 (178)
..+.+++++|+..+..... . +......+.+++.||+|+.+. .+. +.+.+.+++......++++||+++.|
T Consensus 108 ~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~ 185 (210)
T 1pui_A 108 SLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLAS--GARKAQLNMVREAVLAFNGDVQVETFSSLKKQG 185 (210)
T ss_dssp TEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCH--HHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBS
T ss_pred cccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCc--hhHHHHHHHHHHHHHhcCCCCceEEEeecCCCC
Confidence 4578899999977543211 0 111123456888999999876 432 33444454433346789999999999
Q ss_pred HHHHHHHHhhhh
Q 030407 166 IIFTLSITHYIV 177 (178)
Q Consensus 166 i~el~~~l~~~~ 177 (178)
++++++.|.+..
T Consensus 186 ~~~l~~~l~~~~ 197 (210)
T 1pui_A 186 VDKLRQKLDTWF 197 (210)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 181
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.70 E-value=3.6e-05 Score=69.12 Aligned_cols=62 Identities=18% Similarity=0.199 Sum_probs=39.9
Q ss_pred CCCEEEEeCCcch-hhhcc--cccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCc
Q 030407 73 KADLLLCESGGDN-LAANF--SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 134 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~~~~--~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~ 134 (178)
++.+.||+|.|.. ..... ....+|.+++|+|++.+...... .......+.++++||+|+...
T Consensus 76 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC
Confidence 5789999999931 11110 11246999999999887543211 111234567999999999765
No 182
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.67 E-value=2.9e-05 Score=62.90 Aligned_cols=99 Identities=12% Similarity=0.099 Sum_probs=62.1
Q ss_pred CCCEEEEeCCcch-hhhcc-------cccccceEEEEEeCCCCCCCCc--CCC---CC-----CCceeEEEEecCCCCCc
Q 030407 73 KADLLLCESGGDN-LAANF-------SRELADYIIYIIDVSGGDKIPR--KGG---PG-----ITQADLLVINKTDLASA 134 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~~~~-------~~~~ad~~I~VvD~~~~~~~~~--~~~---~q-----i~~adiiviNK~Dl~~~ 134 (178)
+..+.+++|.|.. ....+ ....+|++++|+|+++...... .+. .. -..+-++|+||+|+.++
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~ 130 (307)
T 3r7w_A 51 NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL 130 (307)
T ss_dssp TEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred ceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch
Confidence 5778999999942 10100 1124799999999987642211 000 00 13567999999999874
Q ss_pred hhHhH--------HHHHHHHHhcC-CCCCEEEEecccCCCHHHHHHHHh
Q 030407 135 IGADL--------AVMERDALRMR-DGGPFIFAQVGWVIGIIFTLSITH 174 (178)
Q Consensus 135 ~~~~~--------~~~~~~l~~~n-p~a~i~~~SA~~g~gi~el~~~l~ 174 (178)
... +.+.+..+..+ |..+++++||++ .|+.+.|..+.
T Consensus 131 --~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv 176 (307)
T 3r7w_A 131 --DKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIV 176 (307)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHH
T ss_pred --hhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHH
Confidence 222 33444444432 247999999999 78888876543
No 183
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.66 E-value=7.3e-06 Score=74.31 Aligned_cols=99 Identities=13% Similarity=-0.031 Sum_probs=63.2
Q ss_pred CCCEEEEeCCcchhhh-----------------cccccccceEEEEEeCCCCCCCCcC--CC---CCCCceeEEEEecCC
Q 030407 73 KADLLLCESGGDNLAA-----------------NFSRELADYIIYIIDVSGGDKIPRK--GG---PGITQADLLVINKTD 130 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~-----------------~~~~~~ad~~I~VvD~~~~~~~~~~--~~---~qi~~adiiviNK~D 130 (178)
.++++||.|.|..-.. .|....+|.+++|+|++.+....+. .. .....+-++|+||+|
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiD 228 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 228 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTT
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcc
Confidence 4679999999942110 1111246899999999875433221 11 112356799999999
Q ss_pred CCCchhHhH-HHHHHHHHhc----CCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 131 LASAIGADL-AVMERDALRM----RDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 131 l~~~~~~~~-~~~~~~l~~~----np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
++++ ... ..+.+ .+. .++.+++++||++|.|+++|++.+.+
T Consensus 229 lv~~--~~~~~~il~--~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 229 LMDE--GTDARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp SSCT--TCCSHHHHT--TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred cCCc--chhhHHHHH--HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 9876 221 11111 111 13467899999999999999988764
No 184
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.65 E-value=4.8e-05 Score=64.96 Aligned_cols=146 Identities=12% Similarity=0.128 Sum_probs=79.3
Q ss_pred HHHHHHhhcC-CcEEEEEecCC-CchhHHHHH---HcCCCCccceeecccCCCcccccccccccCH-hHHHhhHhhCCCC
Q 030407 2 LALCKFLRDK-YSLAAVTNDIF-TKEDGEFLM---RNGALPEERIRAVETGGCPHAAIREDISINL-GPLEELSNLFKAD 75 (178)
Q Consensus 2 ~~~~~~~~~~-~~vaVI~nd~g-~~iD~~li~---~~~~~~~~~~~~l~~GcCc~l~i~~dl~~~l-~~l~~l~~~~~~d 75 (178)
.+++.++.++ +|++++..|.. .+--.++-. ..|+ ++.....+. |....+ .++..+ ...++|
T Consensus 118 ~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gv----pv~~~~~~~--------dp~~i~~~al~~a-~~~~~D 184 (443)
T 3dm5_A 118 AKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHI----EVFGNPQEK--------DAIKLAKEGVDYF-KSKGVD 184 (443)
T ss_dssp HHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTC----EEECCTTCC--------CHHHHHHHHHHHH-HHTTCS
T ss_pred HHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCC----cEEecCCCC--------CHHHHHHHHHHHH-HhCCCC
Confidence 3566777664 99999999988 533222211 1232 233222221 111112 333333 356799
Q ss_pred EEEEeCCcchhh---------hcccccccceEEEEEeCCCCCCCCcC---CCCCCCceeEEEEecCCCCCchhHhHHHHH
Q 030407 76 LLLCESGGDNLA---------ANFSRELADYIIYIIDVSGGDKIPRK---GGPGITQADLLVINKTDLASAIGADLAVME 143 (178)
Q Consensus 76 ~iiiEttG~~~~---------~~~~~~~ad~~I~VvD~~~~~~~~~~---~~~qi~~adiiviNK~Dl~~~~~~~~~~~~ 143 (178)
+|||+|.|.... ........|.+++|+|+..+.+.... +.+.+ ..+.+|+||+|.... . ..+.
T Consensus 185 vVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~~-~i~gVIlTKlD~~~~--g--G~~l 259 (443)
T 3dm5_A 185 IIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEAT-PIGSIIVTKLDGSAK--G--GGAL 259 (443)
T ss_dssp EEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHSC-TTEEEEEECCSSCSS--H--HHHH
T ss_pred EEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhhC-CCeEEEEECCCCccc--c--cHHH
Confidence 999999994110 00111124889999999875432110 11111 235799999999765 2 1223
Q ss_pred HHHHhcCCCCCEEEEecccCCCHHHH
Q 030407 144 RDALRMRDGGPFIFAQVGWVIGIIFT 169 (178)
Q Consensus 144 ~~l~~~np~a~i~~~SA~~g~gi~el 169 (178)
..... .+.|+.+++. |+++++|
T Consensus 260 s~~~~--~g~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 260 SAVAA--TGAPIKFIGT--GEKIDDI 281 (443)
T ss_dssp HHHHT--TCCCEEEEEC--SSSTTCE
T ss_pred HHHHH--HCCCEEEEEc--CCChHHh
Confidence 33332 3568888884 8888654
No 185
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.64 E-value=0.00014 Score=63.33 Aligned_cols=61 Identities=16% Similarity=0.108 Sum_probs=39.6
Q ss_pred CCCEEEEeCCcch-h---hhcccccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCc
Q 030407 73 KADLLLCESGGDN-L---AANFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 134 (178)
Q Consensus 73 ~~d~iiiEttG~~-~---~~~~~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~ 134 (178)
+..+.|++|.|.. . ...+ ...+|++|+|+|++.+...+.. .......+-++++||+|+.+.
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~-l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDFSEDTYRT-LTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp TEEEEEECCCCSTTCCHHHHHG-GGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCS
T ss_pred CeEEEEEECCCChhHHHHHHHH-HHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccc
Confidence 5789999999931 0 1111 1247999999999887532211 111234457999999999865
No 186
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.62 E-value=0.00011 Score=66.19 Aligned_cols=62 Identities=15% Similarity=0.184 Sum_probs=39.3
Q ss_pred CCCEEEEeCCcch-hhhcc--cccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCc
Q 030407 73 KADLLLCESGGDN-LAANF--SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 134 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~~~~--~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~ 134 (178)
.+++.||+|.|-. ..... ....+|++|+|+|++.+...+.. .......+-++++||+|+...
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 81 PHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred ceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence 4889999999931 11110 11246999999999887543211 111124467999999999764
No 187
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.62 E-value=2.6e-05 Score=64.77 Aligned_cols=103 Identities=14% Similarity=0.077 Sum_probs=62.5
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCC----------Cc---------CCCCCCCceeEEEEecC
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKI----------PR---------KGGPGITQADLLVINKT 129 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~----------~~---------~~~~qi~~adiiviNK~ 129 (178)
+..+-++.+.|.. +...+. ..++++|+|+|.++.+.. .. .....-..+-++++||+
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf-~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCF-EGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGC-TTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CeeEEEEeCCCchhhhHHHHHHH-hcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECc
Confidence 3456678888831 112222 357999999999874321 00 00001235679999999
Q ss_pred CCCCch---------------hHhHHHHHHHHH----hcC-----CCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 130 DLASAI---------------GADLAVMERDAL----RMR-----DGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 130 Dl~~~~---------------~~~~~~~~~~l~----~~n-----p~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
||..+. ....+...++++ +++ ...++++|||++|+||+++|+++...
T Consensus 271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~ 341 (353)
T 1cip_A 271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDV 341 (353)
T ss_dssp HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHH
Confidence 985220 012334444444 332 24578899999999999999987653
No 188
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.61 E-value=3.2e-05 Score=65.95 Aligned_cols=98 Identities=18% Similarity=0.116 Sum_probs=56.6
Q ss_pred CCCEEEEeCCcchh-----hh------cccccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCchhH
Q 030407 73 KADLLLCESGGDNL-----AA------NFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGA 137 (178)
Q Consensus 73 ~~d~iiiEttG~~~-----~~------~~~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~~~~ 137 (178)
+..+.++.|.|... .. ......+|.+++|+|+..+...... +......+-++|+||+|+.+. .
T Consensus 70 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~--~ 147 (456)
T 4dcu_A 70 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEM--R 147 (456)
T ss_dssp SSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC--------
T ss_pred CceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhh--h
Confidence 56788999999321 00 0111247999999998775432211 111234567999999998754 2
Q ss_pred hHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 138 DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 138 ~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+...+.. ++ ...+.+++||++|.|+.++++.+.+.
T Consensus 148 --~~~~e~~-~l-g~~~~~~iSA~~g~gv~~L~~~i~~~ 182 (456)
T 4dcu_A 148 --ANIYDFY-SL-GFGEPYPISGTHGLGLGDLLDAVAEH 182 (456)
T ss_dssp -----CCSG-GG-SSSSEEECCTTTCTTHHHHHHHHHTT
T ss_pred --hhHHHHH-Hc-CCCceEEeecccccchHHHHHHHHhh
Confidence 1111111 12 23467899999999999999987653
No 189
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.54 E-value=0.00014 Score=54.18 Aligned_cols=76 Identities=17% Similarity=0.085 Sum_probs=38.3
Q ss_pred HHHHHHhhcC-CcEEEEEecCC-Cch------hHHHHHHcCCCCccceeecccCCCcccccc-cccccCHhHHHhhHhhC
Q 030407 2 LALCKFLRDK-YSLAAVTNDIF-TKE------DGEFLMRNGALPEERIRAVETGGCPHAAIR-EDISINLGPLEELSNLF 72 (178)
Q Consensus 2 ~~~~~~~~~~-~~vaVI~nd~g-~~i------D~~li~~~~~~~~~~~~~l~~GcCc~l~i~-~dl~~~l~~l~~l~~~~ 72 (178)
.++++.+.++ .|+++|.+|++ ..+ |..++...|. +.+...++||||.. .+ .++. ...+.++....
T Consensus 22 ~~L~~~l~~~g~~v~~ik~~~~~~diD~~~g~D~~r~~~aGa---~~v~~~s~~~~~~~-~~~~~~~--~~~~~~ll~~~ 95 (169)
T 1xjc_A 22 EKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGA---VATAVEGDGLLQLH-LRRPLWR--LDDVLALYAPL 95 (169)
T ss_dssp HHHHHHHHHTTCCEEEEECCC--------------------C---SEEEEEETTEEEEE-ECCSCCC--HHHHHHHHGGG
T ss_pred HHHHHhhHhcCCeeeEEEeCCCCcccccCCChhHHHHHhcCC---CeEEeccCCEEEEE-ecccccc--hHHHHHHHHhc
Confidence 4677777654 99999999988 544 4666665564 24555666663322 11 0111 12233333223
Q ss_pred CCCEEEEeCCc
Q 030407 73 KADLLLCESGG 83 (178)
Q Consensus 73 ~~d~iiiEttG 83 (178)
++|+||||++|
T Consensus 96 ~~D~vlVEg~~ 106 (169)
T 1xjc_A 96 RLDLVLVEGYK 106 (169)
T ss_dssp CCSEEEEECCT
T ss_pred CCCEEEEeCCC
Confidence 89999999999
No 190
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.52 E-value=9.3e-05 Score=61.41 Aligned_cols=103 Identities=13% Similarity=-0.005 Sum_probs=58.9
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCcC-------------C----C-CC-CCceeEEEEecC
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPRK-------------G----G-PG-ITQADLLVINKT 129 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~~-------------~----~-~q-i~~adiiviNK~ 129 (178)
++.+-++.|.|.. +...+. ..++++|+|+|.+..+..... + . .. -..+-++|+||+
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~y~-~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIHLF-EGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGC-TTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred ceeeEEEECCCchhhhHHHHHHh-CCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 3556778888831 112222 357999999999743221100 0 0 00 134679999999
Q ss_pred CCCCch---------------------hHhHHHHHHHHHh----c---C--C-----CCCEEEEecccCCCHHHHHHHHh
Q 030407 130 DLASAI---------------------GADLAVMERDALR----M---R--D-----GGPFIFAQVGWVIGIIFTLSITH 174 (178)
Q Consensus 130 Dl~~~~---------------------~~~~~~~~~~l~~----~---n--p-----~a~i~~~SA~~g~gi~el~~~l~ 174 (178)
||.++. +...++..+++++ + | | ...+++|||++|+||+++|+.+.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 984210 0113344444332 1 2 2 12468999999999999999876
Q ss_pred hh
Q 030407 175 YI 176 (178)
Q Consensus 175 ~~ 176 (178)
+.
T Consensus 341 ~~ 342 (354)
T 2xtz_A 341 ET 342 (354)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 191
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.47 E-value=8.4e-05 Score=66.75 Aligned_cols=62 Identities=15% Similarity=0.214 Sum_probs=39.4
Q ss_pred CCCEEEEeCCcch-hhhcc--cccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCc
Q 030407 73 KADLLLCESGGDN-LAANF--SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 134 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~~~~--~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~ 134 (178)
+..+.||+|.|.. ..... ....+|.+++|+|++++...... .......+.++|+||+|+...
T Consensus 74 ~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 5779999999931 00000 11236999999999876543211 111134567999999999865
No 192
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.46 E-value=5.2e-05 Score=63.10 Aligned_cols=103 Identities=15% Similarity=0.082 Sum_probs=61.2
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCC------cC-------C----C-CC-CCceeEEEEecC
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIP------RK-------G----G-PG-ITQADLLVINKT 129 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~------~~-------~----~-~q-i~~adiiviNK~ 129 (178)
+..+-++.|.|.. ....+. ..++++|+|+|.++.+... .. + . +. -..+-++++||+
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f-~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~ 278 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECF-DSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKT 278 (362)
T ss_dssp TEEEEEEEECC-------CTTSC-TTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CeEEEEEeccchhhhhhhHHHHh-CCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEECh
Confidence 3567788888831 111222 3579999999998843210 00 0 0 01 234679999999
Q ss_pred CCCCch----------------hHhHHHHHHHHH----hcC-----CCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 130 DLASAI----------------GADLAVMERDAL----RMR-----DGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 130 Dl~~~~----------------~~~~~~~~~~l~----~~n-----p~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
||..+. ....+...++++ .++ ....+++|||++|+||+++|+.+...
T Consensus 279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~ 350 (362)
T 1zcb_A 279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDT 350 (362)
T ss_dssp HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHH
Confidence 985210 012344444442 222 23578899999999999999987653
No 193
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.43 E-value=0.00012 Score=63.97 Aligned_cols=60 Identities=15% Similarity=0.140 Sum_probs=39.1
Q ss_pred CCCEEEEeCCcchhhhc----cc-ccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCc
Q 030407 73 KADLLLCESGGDNLAAN----FS-RELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 134 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~~----~~-~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~ 134 (178)
+..+=||.|.| .+.. .. ...+|+.|+|||+..|...+.. .......+-++++||+|....
T Consensus 99 ~~~iNlIDTPG--HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 99 DRVVNLLDTPG--HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREAL 167 (548)
T ss_dssp TEEEEEECCCC--GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCC
T ss_pred CEEEEEEeCCC--cHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhc
Confidence 45677899999 2211 10 1236999999999998754321 111234466999999999765
No 194
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.40 E-value=0.00026 Score=59.97 Aligned_cols=97 Identities=19% Similarity=0.246 Sum_probs=64.1
Q ss_pred CCEEEEeCCcch--------hhhcccc--cccceEEEEEeCCCCCCCCcC----------CCC-CCCceeEEEEecCCCC
Q 030407 74 ADLLLCESGGDN--------LAANFSR--ELADYIIYIIDVSGGDKIPRK----------GGP-GITQADLLVINKTDLA 132 (178)
Q Consensus 74 ~d~iiiEttG~~--------~~~~~~~--~~ad~~I~VvD~~~~~~~~~~----------~~~-qi~~adiiviNK~Dl~ 132 (178)
..+.+.++.|.. +...+.. ..++.++.++|.+ ...... +.. ....+.++++||+|+.
T Consensus 205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls--~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~ 282 (416)
T 1udx_A 205 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA--DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL 282 (416)
T ss_dssp CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT--SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred ceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc--cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence 457788999841 1111111 2368899999997 111100 110 1245789999999998
Q ss_pred CchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 133 SAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 133 ~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
+. ...+.+.+.+++. ..+++.+||++++|+++|++.+.+.
T Consensus 283 ~~--~~~~~l~~~l~~~--g~~vi~iSA~~g~gi~eL~~~i~~~ 322 (416)
T 1udx_A 283 EE--EAVKALADALARE--GLAVLPVSALTGAGLPALKEALHAL 322 (416)
T ss_dssp CH--HHHHHHHHHHHTT--TSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred hH--HHHHHHHHHHHhc--CCeEEEEECCCccCHHHHHHHHHHH
Confidence 66 5556666655533 4589999999999999999988764
No 195
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.35 E-value=0.00019 Score=58.15 Aligned_cols=82 Identities=10% Similarity=0.054 Sum_probs=53.3
Q ss_pred ccceEEEEEeCCCCCCCCcCC---------CC--CC-CceeEEEEec-CCCCCchhHhHHHHHHHHH--hcCCCCCEEEE
Q 030407 94 LADYIIYIIDVSGGDKIPRKG---------GP--GI-TQADLLVINK-TDLASAIGADLAVMERDAL--RMRDGGPFIFA 158 (178)
Q Consensus 94 ~ad~~I~VvD~~~~~~~~~~~---------~~--qi-~~adiiviNK-~Dl~~~~~~~~~~~~~~l~--~~np~a~i~~~ 158 (178)
..|++|+|||+++.+....+. .+ .+ ..+-+|+.|| -|+..+ ....++.+.+. .+...-.|..+
T Consensus 210 ~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--ms~~EI~e~L~L~~l~r~W~Iq~c 287 (312)
T 3l2o_B 210 VVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAHELHLNLLNHPWLVQDT 287 (312)
T ss_dssp HCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB--CCHHHHHHHTTGGGGCSCEEEEEE
T ss_pred CCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC--CCHHHHHHHcCCccCCCcEEEEec
Confidence 479999999998765322110 00 12 2345677797 588765 33344444432 23334579999
Q ss_pred ecccCCCHHHHHHHHhhhh
Q 030407 159 QVGWVIGIIFTLSITHYIV 177 (178)
Q Consensus 159 SA~~g~gi~el~~~l~~~~ 177 (178)
||+||+|+.|-+++|.+.+
T Consensus 288 sA~tGeGL~EGldWL~~~l 306 (312)
T 3l2o_B 288 EAETLTGFLNGIEWILEEV 306 (312)
T ss_dssp ETTTCTTHHHHHHHHHHHS
T ss_pred ccCCCcCHHHHHHHHHHHH
Confidence 9999999999999987654
No 196
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.33 E-value=0.00017 Score=64.40 Aligned_cols=60 Identities=15% Similarity=0.222 Sum_probs=36.9
Q ss_pred CCCEEEEeCCcch-hhhc--ccccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCC
Q 030407 73 KADLLLCESGGDN-LAAN--FSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLA 132 (178)
Q Consensus 73 ~~d~iiiEttG~~-~~~~--~~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~ 132 (178)
....-|+.|.|.. .... .....+|..++|+|++.+...+.. .......+-++++||+|+.
T Consensus 73 ~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 73 GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp TEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred CEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 4667888999931 1110 011246999999999877543211 0011244679999999997
No 197
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.21 E-value=0.0004 Score=51.84 Aligned_cols=100 Identities=12% Similarity=-0.019 Sum_probs=61.9
Q ss_pred CCEEEEeCCcchhh----hcccccccceEEEEEeCCCCCCCCc--CCC------CCCCceeEEEEecCCCCCchhHhHHH
Q 030407 74 ADLLLCESGGDNLA----ANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLAV 141 (178)
Q Consensus 74 ~d~iiiEttG~~~~----~~~~~~~ad~~I~VvD~~~~~~~~~--~~~------~qi~~adiiviNK~Dl~~~~~~~~~~ 141 (178)
+.+.++++.|.... ..+. ..++.+++|+|.+....... .+. ..-..+-++++||+|+.+......+.
T Consensus 54 ~~~~i~Dt~g~~~~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~ 132 (199)
T 2f9l_A 54 IKAQIWDTAGQERYRRITSAYY-RGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDE 132 (199)
T ss_dssp EEEEEEECSSGGGTTCCCHHHH-TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHH
T ss_pred EEEEEEECCCchhhhhhhHHHH-hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHH
Confidence 45667888883211 1111 24688999999876432111 000 01234568999999996531112233
Q ss_pred HHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 142 MERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 142 ~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
..+..+ .|...++.+||+++.|++++++.+.+.
T Consensus 133 a~~l~~--~~~~~~~d~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 133 ARAFAE--KNNLSFIETSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHH--HTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHH--HcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 444444 356789999999999999999988654
No 198
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.20 E-value=0.0005 Score=57.12 Aligned_cols=52 Identities=15% Similarity=0.088 Sum_probs=37.4
Q ss_pred ceeEEEEecCCCCCchhHhHHHHHHHHHhc-CCCCCEEEEecccCCCHHHHHHHH
Q 030407 120 QADLLVINKTDLASAIGADLAVMERDALRM-RDGGPFIFAQVGWVIGIIFTLSIT 173 (178)
Q Consensus 120 ~adiiviNK~Dl~~~~~~~~~~~~~~l~~~-np~a~i~~~SA~~g~gi~el~~~l 173 (178)
..-+||+||+||+++ +..+.+.+++... ..+.+++.+||++|.|++++...+
T Consensus 161 ~~~iivlNK~DL~~~--~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 161 VEPLIVLNKIDLLDD--EGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp CEEEEEEECGGGCCH--HHHHHHHHHHHHHHTTTCCEEECBTTTTBTHHHHHHHH
T ss_pred CCEEEEEECccCCCc--hhHHHHHHHHHHHHhCCCcEEEEecCCCcCHHHHHHhc
Confidence 345999999999987 4433333333322 235689999999999999998764
No 199
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.19 E-value=0.00021 Score=60.32 Aligned_cols=24 Identities=13% Similarity=-0.244 Sum_probs=20.1
Q ss_pred CCEEEEecccCCCHHHHHHHHhhh
Q 030407 153 GPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 153 a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
..++.|||++++||+++|+.+...
T Consensus 359 ~~~~~TSA~d~~nV~~vF~~v~~~ 382 (402)
T 1azs_C 359 CYPHFTCAVDTENIRRVFNDCRDI 382 (402)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cEEEEEEeecCcCHHHHHHHHHHH
Confidence 356789999999999999987653
No 200
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.18 E-value=0.00026 Score=54.65 Aligned_cols=100 Identities=8% Similarity=0.067 Sum_probs=57.7
Q ss_pred CCCEEEEeCCcch------------hhhcc--cccccceEEEEEeCCCCCCCCcCCC--------CCCCceeEEEEecCC
Q 030407 73 KADLLLCESGGDN------------LAANF--SRELADYIIYIIDVSGGDKIPRKGG--------PGITQADLLVINKTD 130 (178)
Q Consensus 73 ~~d~iiiEttG~~------------~~~~~--~~~~ad~~I~VvD~~~~~~~~~~~~--------~qi~~adiiviNK~D 130 (178)
+..+.|++|.|.. +...+ ....+|.+++|+|+++......... .....+-++|+||+|
T Consensus 77 ~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D 156 (239)
T 3lxx_A 77 ETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKD 156 (239)
T ss_dssp TEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGG
T ss_pred CceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCc
Confidence 4578999999941 11111 1124699999999875433111100 011235799999999
Q ss_pred CCCchhHhHH--------HHHHHHHhcCCCCCEEEEecc-----cCCCHHHHHHHHhhh
Q 030407 131 LASAIGADLA--------VMERDALRMRDGGPFIFAQVG-----WVIGIIFTLSITHYI 176 (178)
Q Consensus 131 l~~~~~~~~~--------~~~~~l~~~np~a~i~~~SA~-----~g~gi~el~~~l~~~ 176 (178)
+.+. ..++ .+.+.+++... +++..++. ++.|+.+|++.+.+.
T Consensus 157 ~~~~--~~~~~~i~~~~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~v~~ll~~i~~~ 211 (239)
T 3lxx_A 157 DLGD--TNLHDYLREAPEDIQDLMDIFGD--RYCALNNKATGAEQEAQRAQLLGLIQRV 211 (239)
T ss_dssp GC--------------CHHHHHHHHHHSS--SEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCc--ccHHHHHHhchHHHHHHHHHcCC--EEEEEECCCCccccHHHHHHHHHHHHHH
Confidence 9865 3333 34555555533 56666655 347999999887654
No 201
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.12 E-value=0.00011 Score=65.35 Aligned_cols=61 Identities=15% Similarity=0.250 Sum_probs=38.0
Q ss_pred CCCEEEEeCCcchh--h-hccc-ccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCc
Q 030407 73 KADLLLCESGGDNL--A-ANFS-RELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 134 (178)
Q Consensus 73 ~~d~iiiEttG~~~--~-~~~~-~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~ 134 (178)
++.+=||.|.| .. . .... ...+|+.|+|||+..|...+.. .......+-++++||+|....
T Consensus 66 ~~~iNlIDTPG-H~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 66 NTKVNIIDTPG-HMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGI 134 (638)
T ss_dssp SCBCCCEECCC-SSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSC
T ss_pred CEEEEEEECCC-cHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccC
Confidence 45567899999 21 1 1110 1246999999999988755421 111123355999999998654
No 202
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.02 E-value=0.00055 Score=56.17 Aligned_cols=101 Identities=17% Similarity=0.106 Sum_probs=58.3
Q ss_pred CEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCcC-------------C-----CCC-CCceeEEEEecCCC
Q 030407 75 DLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPRK-------------G-----GPG-ITQADLLVINKTDL 131 (178)
Q Consensus 75 d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~~-------------~-----~~q-i~~adiiviNK~Dl 131 (178)
.+-++++.|-- +...+. ..++++|+|+|.++.+..... + .+. -..+-++++||+|+
T Consensus 168 ~l~iwDtgGQe~~R~~w~~yf-~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL 246 (327)
T 3ohm_A 168 IFRMVDVGGQRSERRKWIHCF-ENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246 (327)
T ss_dssp EEEEEEECCSHHHHTTGGGGC-SSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHH
T ss_pred eeEEEEcCCchhHHHHHHHHh-CCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchh
Confidence 34566777721 112232 357999999987643221100 0 001 13467999999998
Q ss_pred CCch----------------hHhHHHHHHHHH----hcCC----CCCEEEEecccCCCHHHHHHHHhhh
Q 030407 132 ASAI----------------GADLAVMERDAL----RMRD----GGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 132 ~~~~----------------~~~~~~~~~~l~----~~np----~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
..+. ....+...++++ ++++ ....+.|||+++++|+++|+.+...
T Consensus 247 ~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~ 315 (327)
T 3ohm_A 247 LEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT 315 (327)
T ss_dssp HHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHH
Confidence 5421 012334444433 3332 2357889999999999999987653
No 203
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.02 E-value=0.0006 Score=50.72 Aligned_cols=100 Identities=13% Similarity=0.024 Sum_probs=60.3
Q ss_pred CCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCc--CCC------CCCCceeEEEEecCCCCCchhHhHHH
Q 030407 74 ADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLAV 141 (178)
Q Consensus 74 ~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~--~~~------~qi~~adiiviNK~Dl~~~~~~~~~~ 141 (178)
+...++++.|.. +...+. ..++..++|+|......... .+. .....+-++++||+|+.+......+.
T Consensus 78 ~~~~i~Dt~g~~~~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~ 156 (191)
T 1oix_A 78 IKAQIWDTAGLERYRAITSAYY-RGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDE 156 (191)
T ss_dssp EEEEEEEECSCCSSSCCCHHHH-TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHH
T ss_pred EEEEEEECCCCcchhhhhHHHh-hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHH
Confidence 344567777731 111111 23578899999875422110 000 11234568999999996531112333
Q ss_pred HHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 142 MERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 142 ~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.++..+ .|...++.+||+++.|++++++.|.+.
T Consensus 157 a~~l~~--~~~~~~ld~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 157 ARAFAE--KNGLSFIETSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp HHHHHH--HTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHH--HcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 444444 356789999999999999999998764
No 204
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=96.92 E-value=0.0009 Score=55.02 Aligned_cols=98 Identities=14% Similarity=0.009 Sum_probs=59.6
Q ss_pred CCCEEEEeCCcch-h------hhcccccccceEEEEEeCCCCCCC-CcCCCC--------CCCceeEEEEecCCCCCchh
Q 030407 73 KADLLLCESGGDN-L------AANFSRELADYIIYIIDVSGGDKI-PRKGGP--------GITQADLLVINKTDLASAIG 136 (178)
Q Consensus 73 ~~d~iiiEttG~~-~------~~~~~~~~ad~~I~VvD~~~~~~~-~~~~~~--------qi~~adiiviNK~Dl~~~~~ 136 (178)
...+-++.|.|.- . ...+. ..++++|+|+|+++.... ...+.. .-..+-++++||+||.++
T Consensus 45 ~v~LqIWDTAGQErf~~~~l~~~~yy-r~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~-- 121 (331)
T 3r7w_B 45 LIDLAVMELPGQLNYFEPSYDSERLF-KSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE-- 121 (331)
T ss_dssp SSCEEEEECCSCSSSCCCSHHHHHHH-TTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS--
T ss_pred EEEEEEEECCCchhccchhhhhhhhc-cCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch--
Confidence 4788999999931 1 11222 368999999999875100 001100 013456899999999876
Q ss_pred HhH----HHHHHH-HHhcC------CCCCEEEEecccCCCHHHHHHHHh
Q 030407 137 ADL----AVMERD-ALRMR------DGGPFIFAQVGWVIGIIFTLSITH 174 (178)
Q Consensus 137 ~~~----~~~~~~-l~~~n------p~a~i~~~SA~~g~gi~el~~~l~ 174 (178)
.+. ..+.+. .+++. -+.++++|||++ .+|.+.|..+.
T Consensus 122 ~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv 169 (331)
T 3r7w_B 122 DFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIV 169 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHH
T ss_pred hhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHH
Confidence 332 122222 22222 246899999998 58999987654
No 205
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=96.87 E-value=0.0011 Score=54.74 Aligned_cols=102 Identities=14% Similarity=0.051 Sum_probs=60.1
Q ss_pred CCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCcC-------------C-----CCC-CCceeEEEEecCC
Q 030407 74 ADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPRK-------------G-----GPG-ITQADLLVINKTD 130 (178)
Q Consensus 74 ~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~~-------------~-----~~q-i~~adiiviNK~D 130 (178)
..+-++.+.|-- +...+. ..++++|+|+|.++.+..... + .+. -..+-++++||+|
T Consensus 161 v~l~iwDtaGQe~~R~~w~~yy-~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 161 IPFHLIDVGGQRSERKXWVSFF-SDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp CEEEEEECCSCHHHHHHHHTTS-CSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeccccCCCcccccccHHHHh-ccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 456677787731 112233 367999999999843321100 0 001 1346799999999
Q ss_pred CCCch---------------hHhHHHHHHHHHhcC-------------------------CCCCEEEEecccCCCHHHHH
Q 030407 131 LASAI---------------GADLAVMERDALRMR-------------------------DGGPFIFAQVGWVIGIIFTL 170 (178)
Q Consensus 131 l~~~~---------------~~~~~~~~~~l~~~n-------------------------p~a~i~~~SA~~g~gi~el~ 170 (178)
|..+. +...+...++++..+ ....++.|||+++.+|+.+|
T Consensus 240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF 319 (340)
T 4fid_A 240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF 319 (340)
T ss_dssp HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence 85320 011233434443322 12467899999999999999
Q ss_pred HHHhhh
Q 030407 171 SITHYI 176 (178)
Q Consensus 171 ~~l~~~ 176 (178)
+.+...
T Consensus 320 ~~v~~~ 325 (340)
T 4fid_A 320 MLAVDV 325 (340)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877653
No 206
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.66 E-value=7.2e-05 Score=56.57 Aligned_cols=62 Identities=16% Similarity=0.246 Sum_probs=37.4
Q ss_pred CCCEEEEeCCcchh----hhcccc---cccceEEEEEeCC-CCCCCCc--C-CCC---------CCCceeEEEEecCCCC
Q 030407 73 KADLLLCESGGDNL----AANFSR---ELADYIIYIIDVS-GGDKIPR--K-GGP---------GITQADLLVINKTDLA 132 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~---~~ad~~I~VvD~~-~~~~~~~--~-~~~---------qi~~adiiviNK~Dl~ 132 (178)
...+.+++|.|..- ...+.. ..+|.+++|+|++ ....... . ... .-..+-++|+||+|+.
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 133 (218)
T 1nrj_B 54 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 133 (218)
T ss_dssp GSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred CceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhc
Confidence 56889999999421 112221 1268999999998 3322211 0 000 0134579999999998
Q ss_pred Cc
Q 030407 133 SA 134 (178)
Q Consensus 133 ~~ 134 (178)
++
T Consensus 134 ~~ 135 (218)
T 1nrj_B 134 TA 135 (218)
T ss_dssp TC
T ss_pred cc
Confidence 76
No 207
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.57 E-value=0.00036 Score=54.59 Aligned_cols=103 Identities=10% Similarity=0.004 Sum_probs=60.1
Q ss_pred CCCEEEEeCCcch-----h-h-------hcc--cccccceEEEEEeCCCCCCCCcC--------CC-CCCCceeEEEEec
Q 030407 73 KADLLLCESGGDN-----L-A-------ANF--SRELADYIIYIIDVSGGDKIPRK--------GG-PGITQADLLVINK 128 (178)
Q Consensus 73 ~~d~iiiEttG~~-----~-~-------~~~--~~~~ad~~I~VvD~~~~~~~~~~--------~~-~qi~~adiiviNK 128 (178)
+..+.|+.|.|.. . . ..+ ....+|.+++|+|+++....... +. .....+-+++.||
T Consensus 69 ~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK 148 (247)
T 3lxw_A 69 KCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRK 148 (247)
T ss_dssp TEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECG
T ss_pred CcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEch
Confidence 5678999999941 0 0 011 11357999999999753211100 01 1125577999999
Q ss_pred CCCCCchhH-hH-----HHHHHHHHhcCCCCCEEEEecc-----cCCCHHHHHHHHhhhh
Q 030407 129 TDLASAIGA-DL-----AVMERDALRMRDGGPFIFAQVG-----WVIGIIFTLSITHYIV 177 (178)
Q Consensus 129 ~Dl~~~~~~-~~-----~~~~~~l~~~np~a~i~~~SA~-----~g~gi~el~~~l~~~~ 177 (178)
.|+.+...+ .+ +.+...++... .+++..++. +++|+++|++.+.+.+
T Consensus 149 ~Dl~~~~~~~~l~~~~~~~l~~l~~~~g--~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~ 206 (247)
T 3lxw_A 149 EDLAGGSLHDYVSNTENRALRELVAECG--GRVCAFDNRATGREQEAQVEQLLGMVEGLV 206 (247)
T ss_dssp GGGTTCCHHHHHHHCCCHHHHHHHHHTT--TCEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHhhcccHHHHHHHHHcC--CeEEEEeCCCCccccHHHHHHHHHHHHHHH
Confidence 999764111 11 22444444442 355555543 3789999999887654
No 208
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.38 E-value=0.00074 Score=55.56 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=55.6
Q ss_pred CCCEEEEeCCcchhh-----------------hcccccccceEEEEEeCCCCCCCCc------CCCCCCCceeEEEEecC
Q 030407 73 KADLLLCESGGDNLA-----------------ANFSRELADYIIYIIDVSGGDKIPR------KGGPGITQADLLVINKT 129 (178)
Q Consensus 73 ~~d~iiiEttG~~~~-----------------~~~~~~~ad~~I~VvD~~~~~~~~~------~~~~qi~~adiiviNK~ 129 (178)
.+++.||.|.|..-. ..+ ...+|.+++++|+...+.... .........-++|+||+
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~-i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~ 213 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSY-IEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKI 213 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHH-HHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHH-hhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCC
Confidence 468999999994210 011 123688999998754321110 00111233579999999
Q ss_pred CCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHH
Q 030407 130 DLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI 172 (178)
Q Consensus 130 Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~ 172 (178)
|++++.....+.+... ...-..+++.+|++++.|+++.+..
T Consensus 214 Dl~~~~~~~~~~~~~~--~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 214 DLMDKGTDAVEILEGR--SFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp GGCCTTCCSHHHHTTS--SSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred ccCCCcccHHHHHcCc--cccccCCeEEEEECChHHhccCCCH
Confidence 9986521112222211 1123468899999999988876543
No 209
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.35 E-value=0.0012 Score=53.16 Aligned_cols=50 Identities=8% Similarity=-0.147 Sum_probs=29.1
Q ss_pred eeEEEEecCCCCCchhHhH----HHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 121 ADLLVINKTDLASAIGADL----AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 121 adiiviNK~Dl~~~~~~~~----~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
.-++|+||.|+.+. .++ +++.+.++.. +.+++++||++| |++++|+.+.+
T Consensus 157 ~iilV~~K~Dl~~~--~e~~~~~~~~~~~~~~~--~~~~~e~Sa~~~-~v~e~f~~l~~ 210 (301)
T 2qnr_A 157 NIVPVIAKADTLTL--KERERLKKRILDEIEEH--NIKIYHLPDAES-DEDEDFKEQTR 210 (301)
T ss_dssp CEEEEECCGGGSCH--HHHHHHHHHHHHHHHHT--TCCCCCCC----------CHHHHH
T ss_pred CEEEEEEeCCCCCH--HHHHHHHHHHHHHHHHc--CCeEEecCCccc-cccHHHHHHHH
Confidence 56999999999876 443 3445555544 468999999999 99999877654
No 210
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.27 E-value=0.0039 Score=56.01 Aligned_cols=58 Identities=12% Similarity=0.112 Sum_probs=36.3
Q ss_pred CEEEEeCCcchhhhc---cc--ccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCCCc
Q 030407 75 DLLLCESGGDNLAAN---FS--RELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASA 134 (178)
Q Consensus 75 d~iiiEttG~~~~~~---~~--~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~~~ 134 (178)
-+=||.|.| .+.. .. ....|++|+|||+..|...+.. .......+-++++||+|....
T Consensus 86 ~iNlIDTPG--HvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 86 RVNVIDTPG--HVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp EEEEECCCS--CTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTC
T ss_pred EEEEEeCCC--CcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCc
Confidence 344899999 2210 01 1136999999999998754321 111123456999999998643
No 211
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.13 E-value=0.0023 Score=52.94 Aligned_cols=50 Identities=10% Similarity=-0.102 Sum_probs=26.7
Q ss_pred ceeEEEEecCCCCCchhHhHHHHHHHHHhcC--CCCCEEEEecccCCCHHHHHHH
Q 030407 120 QADLLVINKTDLASAIGADLAVMERDALRMR--DGGPFIFAQVGWVIGIIFTLSI 172 (178)
Q Consensus 120 ~adiiviNK~Dl~~~~~~~~~~~~~~l~~~n--p~a~i~~~SA~~g~gi~el~~~ 172 (178)
.+-++|+||+|+.+. .++..+.+.+++.. .+.+++++||++|.| ++.+..
T Consensus 175 ~piIlV~NK~Dl~~~--~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~ 226 (361)
T 2qag_A 175 VNIVPVIAKADTLTL--KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKE 226 (361)
T ss_dssp SCEEEEEECCSSSCH--HHHHHHHHHHHHHTTCC-CCSCCCC----------CHH
T ss_pred CCEEEEEECCCCCCH--HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHH
Confidence 457999999999877 55544433343321 246899999999998 555443
No 212
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.09 E-value=0.00023 Score=60.56 Aligned_cols=103 Identities=18% Similarity=0.169 Sum_probs=56.0
Q ss_pred CCCCEEEEeCCcchh-----hh---cc-cccccceEEEEEeCCCCCCCCc---CCCCCCCceeEEEEecCCCCCchhHhH
Q 030407 72 FKADLLLCESGGDNL-----AA---NF-SRELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASAIGADL 139 (178)
Q Consensus 72 ~~~d~iiiEttG~~~-----~~---~~-~~~~ad~~I~VvD~~~~~~~~~---~~~~qi~~adiiviNK~Dl~~~~~~~~ 139 (178)
.++|+|||+|.|..- .. .. ....+|.+++|+|+..+.+... .+...+.....+|+||+|........+
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~~~~i~gvVlnK~D~~~~~g~~l 258 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDGSAKGGGAL 258 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHHHHHHHHHTTSCSCEEEEEECSSSCSTTHHHH
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHHHHHHHHHhhcccCCeEEEEeCCCCccchHHHH
Confidence 579999999999421 00 01 1112588999999976642211 011111012789999999865411111
Q ss_pred HHHHHHH-------------HhcCCCCCEEEEecccCCC-HHHHHHHHhh
Q 030407 140 AVMERDA-------------LRMRDGGPFIFAQVGWVIG-IIFTLSITHY 175 (178)
Q Consensus 140 ~~~~~~l-------------~~~np~a~i~~~SA~~g~g-i~el~~~l~~ 175 (178)
. +.... ..+.|..+..++|+..|.| +..|++.+.+
T Consensus 259 ~-~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~ 307 (432)
T 2v3c_C 259 S-AVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAED 307 (432)
T ss_dssp H-HHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTS
T ss_pred H-HHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHH
Confidence 1 21111 1112344455668888888 7777665543
No 213
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.88 E-value=0.0071 Score=51.41 Aligned_cols=143 Identities=17% Similarity=0.173 Sum_probs=75.0
Q ss_pred HHHHHhhc-CCcEEEEEecCC-C-chhHHHH--HHcCCCCccceeecccCCCcccccccccccCH-hHHHhhHhhCCCCE
Q 030407 3 ALCKFLRD-KYSLAAVTNDIF-T-KEDGEFL--MRNGALPEERIRAVETGGCPHAAIREDISINL-GPLEELSNLFKADL 76 (178)
Q Consensus 3 ~~~~~~~~-~~~vaVI~nd~g-~-~iD~~li--~~~~~~~~~~~~~l~~GcCc~l~i~~dl~~~l-~~l~~l~~~~~~d~ 76 (178)
+++.++.+ ++||.++.-|.. . .++.... +..|+ ++....++... .... .++..+. ..++|+
T Consensus 116 kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv----~~~~~~~~~dp--------~~i~~~al~~a~-~~~~Dv 182 (433)
T 3kl4_A 116 KLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGV----QVYGEPNNQNP--------IEIAKKGVDIFV-KNKMDI 182 (433)
T ss_dssp HHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTC----CEECCTTCSCH--------HHHHHHHHHHTT-TTTCSE
T ss_pred HHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCC----ceeeccccCCH--------HHHHHHHHHHHH-hcCCCE
Confidence 45666655 499999999977 3 3332221 11232 22222211111 1111 3333332 457999
Q ss_pred EEEeCCcchh---hhccc--------ccccceEEEEEeCCCCCCCCc---CCCCCCCceeEEEEecCCCCCchhHhHHHH
Q 030407 77 LLCESGGDNL---AANFS--------RELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASAIGADLAVM 142 (178)
Q Consensus 77 iiiEttG~~~---~~~~~--------~~~ad~~I~VvD~~~~~~~~~---~~~~qi~~adiiviNK~Dl~~~~~~~~~~~ 142 (178)
|||+|.|... ...+. ....+.+++|+|+..+.+... .+.+.+ ....+|+||.|..... ..+
T Consensus 183 vIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~~-~~~gVIlTKlD~~a~~----G~a 257 (433)
T 3kl4_A 183 IIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQAS-PIGSVIITKMDGTAKG----GGA 257 (433)
T ss_dssp EEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHHC-SSEEEEEECGGGCSCH----HHH
T ss_pred EEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhccc-CCcEEEEecccccccc----hHH
Confidence 9999999311 11010 011378999999987643211 011111 2478999999987552 222
Q ss_pred HHHHHhcCCCCCEEEEecccCCCHH
Q 030407 143 ERDALRMRDGGPFIFAQVGWVIGII 167 (178)
Q Consensus 143 ~~~l~~~np~a~i~~~SA~~g~gi~ 167 (178)
.+..... +.|+.+++. |++++
T Consensus 258 ls~~~~~--g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 258 LSAVVAT--GATIKFIGT--GEKID 278 (433)
T ss_dssp HHHHHHH--TCEEEEEEC--CSSSS
T ss_pred HHHHHHH--CCCEEEEEC--CCChH
Confidence 2233322 468888875 88774
No 214
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=94.98 E-value=0.0043 Score=52.02 Aligned_cols=47 Identities=17% Similarity=0.146 Sum_probs=35.9
Q ss_pred ceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHH
Q 030407 120 QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTL 170 (178)
Q Consensus 120 ~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~ 170 (178)
.+.++|+||+|+... ..++.+.+..... .++++++||+.+.|+.+++
T Consensus 215 kP~i~v~NK~D~~~~--~~l~~l~~~~~~~--~~~vv~iSA~~e~~l~~L~ 261 (397)
T 1wxq_A 215 KPMVIAANKADAASD--EQIKRLVREEEKR--GYIVIPTSAAAELTLRKAA 261 (397)
T ss_dssp SCEEEEEECGGGSCH--HHHHHHHHHHHHT--TCEEEEECHHHHHHHHSCS
T ss_pred CCEEEEEeCccccch--HHHHHHHHHHhhc--CCcEEEEeccchhhHHHHH
Confidence 678999999999844 5566666555432 4689999999999998764
No 215
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.92 E-value=0.0038 Score=45.82 Aligned_cols=72 Identities=14% Similarity=0.181 Sum_probs=40.9
Q ss_pred CCCEEEEeCCcchh----hhcccc---cccceEEEEEeCC-CCCCCCc---CCCC---------CCCceeEEEEecCCCC
Q 030407 73 KADLLLCESGGDNL----AANFSR---ELADYIIYIIDVS-GGDKIPR---KGGP---------GITQADLLVINKTDLA 132 (178)
Q Consensus 73 ~~d~iiiEttG~~~----~~~~~~---~~ad~~I~VvD~~-~~~~~~~---~~~~---------qi~~adiiviNK~Dl~ 132 (178)
...+.+++|.|..- ...+.. ..+|++++|+|++ ....... .+.. .-..+-++|+||+|+.
T Consensus 90 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 169 (193)
T 2ged_A 90 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 169 (193)
T ss_dssp CTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred CCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhc
Confidence 56788999999411 111111 1268999999998 3211100 0000 0134679999999998
Q ss_pred CchhHhHHHHHHHH
Q 030407 133 SAIGADLAVMERDA 146 (178)
Q Consensus 133 ~~~~~~~~~~~~~l 146 (178)
++ ...+.+.+.+
T Consensus 170 ~~--~~~~~~~~~l 181 (193)
T 2ged_A 170 TA--RPPSKIKDAL 181 (193)
T ss_dssp TC--CCHHHHHHHH
T ss_pred CC--CCHHHHHHHH
Confidence 76 4444444443
No 216
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.74 E-value=0.011 Score=50.02 Aligned_cols=53 Identities=6% Similarity=-0.183 Sum_probs=26.1
Q ss_pred CceeEEEEecCCCCCchhHhHHH----HHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 119 TQADLLVINKTDLASAIGADLAV----MERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 119 ~~adiiviNK~Dl~~~~~~~~~~----~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
..+-++|+||+|+.++ .++.. +.+.+... +.+++.+||++++++++++..+..
T Consensus 167 ~v~iIlVinK~Dll~~--~ev~~~k~~i~~~~~~~--~i~~~~~sa~~~~~v~~~~~~l~~ 223 (418)
T 2qag_C 167 KVNIIPLIAKADTLTP--EECQQFKKQIMKEIQEH--KIKIYEFPETDDEEENKLVKKIKD 223 (418)
T ss_dssp TSEEEEEEESTTSSCH--HHHHHHHHHHHHHHHHH--TCCCCCCC----------------
T ss_pred cCcEEEEEEcccCccH--HHHHHHHHHHHHHHHHc--CCeEEeCCCCCCcCHHHHHHHHHh
Confidence 3567999999999876 55543 44444443 568999999999999988776543
No 217
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.02 E-value=0.13 Score=41.31 Aligned_cols=145 Identities=15% Similarity=0.140 Sum_probs=75.1
Q ss_pred HHHHHhhc-CCcEEEEEecCC-CchhHH---HHHHcCCCCccceeecccCCCcccccccccccCH-hHHHhhHhhCCCCE
Q 030407 3 ALCKFLRD-KYSLAAVTNDIF-TKEDGE---FLMRNGALPEERIRAVETGGCPHAAIREDISINL-GPLEELSNLFKADL 76 (178)
Q Consensus 3 ~~~~~~~~-~~~vaVI~nd~g-~~iD~~---li~~~~~~~~~~~~~l~~GcCc~l~i~~dl~~~l-~~l~~l~~~~~~d~ 76 (178)
++...+.. +.|+.++--|+. ..--.+ +.+..|+ ++..-..+. |....+ ..+..+ +..++|+
T Consensus 117 ~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v----~v~~~~~~~--------~p~~~~~~~l~~~-~~~~~D~ 183 (297)
T 1j8m_F 117 KLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGV----PVYGEPGEK--------DVVGIAKRGVEKF-LSEKMEI 183 (297)
T ss_dssp HHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTC----CEECCTTCC--------CHHHHHHHHHHHH-HHTTCSE
T ss_pred HHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCe----EEEecCCCC--------CHHHHHHHHHHHH-HhCCCCE
Confidence 44455544 489999998877 432211 1223344 333321111 111112 233333 2368999
Q ss_pred EEEeCCcchh--h-hccc--------ccccceEEEEEeCCCCCCCCcCCCCCC--Cce-eEEEEecCCCCCchhHhHHHH
Q 030407 77 LLCESGGDNL--A-ANFS--------RELADYIIYIIDVSGGDKIPRKGGPGI--TQA-DLLVINKTDLASAIGADLAVM 142 (178)
Q Consensus 77 iiiEttG~~~--~-~~~~--------~~~ad~~I~VvD~~~~~~~~~~~~~qi--~~a-diiviNK~Dl~~~~~~~~~~~ 142 (178)
|||.|.|... . .... ...+|.+++|+|+..+.+..... ..+ ... ..+|+||+|.... . ..+
T Consensus 184 ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~~-~~~~~~~~i~gvVlnk~D~~~~--~--g~~ 258 (297)
T 1j8m_F 184 IIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLA-SKFNQASKIGTIIITKMDGTAK--G--GGA 258 (297)
T ss_dssp EEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH-HHHHHTCTTEEEEEECGGGCTT--H--HHH
T ss_pred EEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHHH-HHHHhhCCCCEEEEeCCCCCcc--h--HHH
Confidence 9999999422 1 0111 11358899999987542211100 011 122 5789999998644 2 223
Q ss_pred HHHHHhcCCCCCEEEEecccCCCHHHH
Q 030407 143 ERDALRMRDGGPFIFAQVGWVIGIIFT 169 (178)
Q Consensus 143 ~~~l~~~np~a~i~~~SA~~g~gi~el 169 (178)
.+..... +.|+.+++ +|++++++
T Consensus 259 ~~~~~~~--~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 259 LSAVAAT--GATIKFIG--TGEKIDEL 281 (297)
T ss_dssp HHHHHTT--TCCEEEEE--CSSSTTCE
T ss_pred HHHHHHH--CcCEEEEe--CCCChhhc
Confidence 3333332 46888876 68887654
No 218
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=94.00 E-value=0.011 Score=54.07 Aligned_cols=59 Identities=22% Similarity=0.206 Sum_probs=38.0
Q ss_pred CCCEEEEeCCcch----hhhcccccccceEEEEEeCCCCCCCCcC----CCCCCCceeEEEEecCCCC
Q 030407 73 KADLLLCESGGDN----LAANFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLA 132 (178)
Q Consensus 73 ~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~~~~~~~~~----~~~qi~~adiiviNK~Dl~ 132 (178)
++.+-||+|.|.. ....+. ..+|++|+|+|++++...+.. .......+-++++||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l-~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAAL-RVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHH-HTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHH-HhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 5678899999931 111111 247999999999987543221 0011234679999999986
No 219
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.85 E-value=0.25 Score=36.43 Aligned_cols=25 Identities=12% Similarity=-0.013 Sum_probs=16.3
Q ss_pred HHHHHHhhc-CCcEEEEEecCC-Cchh
Q 030407 2 LALCKFLRD-KYSLAAVTNDIF-TKED 26 (178)
Q Consensus 2 ~~~~~~~~~-~~~vaVI~nd~g-~~iD 26 (178)
.++++.+.+ ++++++|.++++ ..+|
T Consensus 24 ~~l~~~l~~~g~~v~~i~~~~~~~~id 50 (174)
T 1np6_A 24 KKLIPALCARGIRPGLIKHTHHDMDVD 50 (174)
T ss_dssp HHHHHHHHHTTCCEEEEEECCC-----
T ss_pred HHHHHhccccCCceeEEeeCCCccccC
Confidence 456666655 489999999987 6676
No 220
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=90.50 E-value=0.46 Score=36.95 Aligned_cols=63 Identities=13% Similarity=0.138 Sum_probs=36.4
Q ss_pred CCCCEEEEeCCcchhh----h----c---c-cccccceEEEEEeCCCCCCC-Cc-CC--------CCCCCceeEEEEecC
Q 030407 72 FKADLLLCESGGDNLA----A----N---F-SRELADYIIYIIDVSGGDKI-PR-KG--------GPGITQADLLVINKT 129 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~----~----~---~-~~~~ad~~I~VvD~~~~~~~-~~-~~--------~~qi~~adiiviNK~ 129 (178)
.+..+.|+.|.|..-. . . + ....+|.+++|+|+...... .. .+ ...+..+-++|+||+
T Consensus 85 ~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~ 164 (270)
T 1h65_A 85 AGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHA 164 (270)
T ss_dssp TTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECC
T ss_pred CCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECc
Confidence 3568999999994100 0 0 1 11246999999887542111 00 00 111113679999999
Q ss_pred CCCCc
Q 030407 130 DLASA 134 (178)
Q Consensus 130 Dl~~~ 134 (178)
|+.++
T Consensus 165 Dl~~~ 169 (270)
T 1h65_A 165 QFSPP 169 (270)
T ss_dssp SCCCG
T ss_pred ccCCc
Confidence 99865
No 221
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=87.40 E-value=0.3 Score=39.50 Aligned_cols=89 Identities=13% Similarity=0.062 Sum_probs=48.6
Q ss_pred hCCCCEEEEeCCcchhhh---------------cccccccceEEEEEeCCCCCCCCc---CCCCCCCceeEEEEecCCCC
Q 030407 71 LFKADLLLCESGGDNLAA---------------NFSRELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLA 132 (178)
Q Consensus 71 ~~~~d~iiiEttG~~~~~---------------~~~~~~ad~~I~VvD~~~~~~~~~---~~~~qi~~adiiviNK~Dl~ 132 (178)
..++|+|||.|.|..... ...+...|.+++|+|+..+.+... .+.+.+. -.-+|+||.|-.
T Consensus 189 ~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~~~~l~~~~~~~~~~~-i~GvVltk~d~~ 267 (320)
T 1zu4_A 189 EQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKVAD-VSGIILTKMDST 267 (320)
T ss_dssp HTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGTHHHHHHHHHHTTTSC-CCEEEEECGGGC
T ss_pred hcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCcHHHHHHHHHHhhcCC-CcEEEEeCCCCC
Confidence 468999999999942110 011222478899999875421111 1111111 235899999975
Q ss_pred CchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHH
Q 030407 133 SAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIF 168 (178)
Q Consensus 133 ~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~e 168 (178)
.. . ..+.+..... +.|+.+++ +|+++++
T Consensus 268 ~~--~--g~~~~~~~~~--~~Pi~~i~--~Ge~~~d 295 (320)
T 1zu4_A 268 SK--G--GIGLAIKELL--NIPIKMIG--VGEKVDD 295 (320)
T ss_dssp SC--T--THHHHHHHHH--CCCEEEEE--CSSSTTC
T ss_pred Cc--h--hHHHHHHHHH--CcCEEEEe--CCCCccc
Confidence 44 1 2333344433 34676664 4666644
No 222
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=87.23 E-value=1.3 Score=35.93 Aligned_cols=145 Identities=17% Similarity=0.249 Sum_probs=74.5
Q ss_pred HHHHhhc-CCcEEEEEecCC-Cc-hhHHH--HHHcCCCCccceeecccCCCcccccccccccCHhHHHhhHhhCCCCEEE
Q 030407 4 LCKFLRD-KYSLAAVTNDIF-TK-EDGEF--LMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLL 78 (178)
Q Consensus 4 ~~~~~~~-~~~vaVI~nd~g-~~-iD~~l--i~~~~~~~~~~~~~l~~GcCc~l~i~~dl~~~l~~l~~l~~~~~~d~ii 78 (178)
+...+++ +.+|.+.-.|.. .+ .+... -++.|+ .+..-..+......+ .+.+. +....++|+++
T Consensus 149 Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv----~~v~q~~~~~p~~~v-------~e~l~-~~~~~~~d~vl 216 (328)
T 3e70_C 149 LANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGV----KVIKHSYGADPAAVA-------YDAIQ-HAKARGIDVVL 216 (328)
T ss_dssp HHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTC----EEECCCTTCCHHHHH-------HHHHH-HHHHHTCSEEE
T ss_pred HHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCc----eEEeccccCCHHHHH-------HHHHH-HHHhccchhhH
Confidence 4444544 378888888876 32 33211 123343 233332232332211 12222 22234789999
Q ss_pred EeCCcchh-hhc----c----cccccceEEEEEeCCCCCCCCcCCCCCC---CceeEEEEecCCCCCchhHhHHHHHHHH
Q 030407 79 CESGGDNL-AAN----F----SRELADYIIYIIDVSGGDKIPRKGGPGI---TQADLLVINKTDLASAIGADLAVMERDA 146 (178)
Q Consensus 79 iEttG~~~-~~~----~----~~~~ad~~I~VvD~~~~~~~~~~~~~qi---~~adiiviNK~Dl~~~~~~~~~~~~~~l 146 (178)
++|.|..- ... . .....|-.+.++|+..+.+..... ..+ .....+++||.|-.... ..+...+
T Consensus 217 iDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~-~~~~~~~~it~iilTKlD~~a~~----G~~l~~~ 291 (328)
T 3e70_C 217 IDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQA-RQFNEAVKIDGIILTKLDADARG----GAALSIS 291 (328)
T ss_dssp EEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHH-HHHHHHSCCCEEEEECGGGCSCC----HHHHHHH
T ss_pred HhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHH-HHHHHhcCCCEEEEeCcCCccch----hHHHHHH
Confidence 99999421 100 0 001137788999987664221100 001 12468999999975432 2233344
Q ss_pred HhcCCCCCEEEEecccCCCHHHH
Q 030407 147 LRMRDGGPFIFAQVGWVIGIIFT 169 (178)
Q Consensus 147 ~~~np~a~i~~~SA~~g~gi~el 169 (178)
... +.|+.+++ +|++++++
T Consensus 292 ~~~--~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 292 YVI--DAPILFVG--VGQGYDDL 310 (328)
T ss_dssp HHH--TCCEEEEE--CSSSTTCE
T ss_pred HHH--CCCEEEEe--CCCCcccc
Confidence 433 35888888 78887654
No 223
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=86.72 E-value=1.9 Score=36.32 Aligned_cols=118 Identities=19% Similarity=0.211 Sum_probs=60.0
Q ss_pred HHHHHhhc--CCcEEEEEecCC-C-chhHHH--HHHcCCCCccceeecccCCCcccccccccccCH-hHHHhhHhhCCCC
Q 030407 3 ALCKFLRD--KYSLAAVTNDIF-T-KEDGEF--LMRNGALPEERIRAVETGGCPHAAIREDISINL-GPLEELSNLFKAD 75 (178)
Q Consensus 3 ~~~~~~~~--~~~vaVI~nd~g-~-~iD~~l--i~~~~~~~~~~~~~l~~GcCc~l~i~~dl~~~l-~~l~~l~~~~~~d 75 (178)
+++.++.+ ++||.++--|+. . .+|... -...++ ++.....+. |....+ ..+..+ +..++|
T Consensus 119 ~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l----~v~~~~~~~--------dp~~i~~~~l~~~-~~~~~D 185 (433)
T 2xxa_A 119 KLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGV----DFFPSDVGQ--------KPVDIVNAALKEA-KLKFYD 185 (433)
T ss_dssp HHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTC----EECCCCSSS--------CHHHHHHHHHHHH-HHTTCS
T ss_pred HHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCe----eEEeCCCCC--------CHHHHHHHHHHHH-HhCCCC
Confidence 45556643 689999999987 4 344211 112233 332221111 111111 233333 235899
Q ss_pred EEEEeCCcchh-----hhc---cc-ccccceEEEEEeCCCCCCCCcC---CCCCCCceeEEEEecCCCCCc
Q 030407 76 LLLCESGGDNL-----AAN---FS-RELADYIIYIIDVSGGDKIPRK---GGPGITQADLLVINKTDLASA 134 (178)
Q Consensus 76 ~iiiEttG~~~-----~~~---~~-~~~ad~~I~VvD~~~~~~~~~~---~~~qi~~adiiviNK~Dl~~~ 134 (178)
+|||+|.|..- ... .. ....+.+++|+|+..+.+.... +.+.+.. .-+|+||.|....
T Consensus 186 ~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~~l~i-~gvVlnK~D~~~~ 255 (433)
T 2xxa_A 186 VLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPL-TGVVLTKVDGDAR 255 (433)
T ss_dssp EEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHHHSCC-CCEEEECTTSSSC
T ss_pred EEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhccCCC-eEEEEecCCCCcc
Confidence 99999999311 000 00 1124788999999765322110 1001111 3579999998654
No 224
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=85.38 E-value=0.3 Score=40.40 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=33.3
Q ss_pred ceeEEEEecCC--CCCc-hhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHH
Q 030407 120 QADLLVINKTD--LASA-IGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTL 170 (178)
Q Consensus 120 ~adiiviNK~D--l~~~-~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~ 170 (178)
.+-+++.||.| +.+. .....+.++++.+.. +++++++||++++++.+|.
T Consensus 202 KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~--g~~vv~iSAk~E~el~eL~ 253 (368)
T 2dby_A 202 KPVIYVANVAEEDLPDGRGNPQVEAVRRKALEE--GAEVVVVSARLEAELAELS 253 (368)
T ss_dssp SCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHH--TCEEEEECHHHHHHHHTSC
T ss_pred CCeEEeccccHHhhcccchhhHHHHHHHHHHHc--CCeEEEeechhHHHHHHhc
Confidence 57899999997 3331 014566777766654 3699999999866655543
No 225
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=81.94 E-value=2.4 Score=32.61 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=34.7
Q ss_pred CCCEEEEeCCcch----h--------hhcccccccceEEEEEeCCCCCCC--CcCC--------CCCCCceeEEEEecCC
Q 030407 73 KADLLLCESGGDN----L--------AANFSRELADYIIYIIDVSGGDKI--PRKG--------GPGITQADLLVINKTD 130 (178)
Q Consensus 73 ~~d~iiiEttG~~----~--------~~~~~~~~ad~~I~VvD~~~~~~~--~~~~--------~~qi~~adiiviNK~D 130 (178)
+..+.|+.|.|.. . ...+....+|.+++|+|....... .... ......+-++|+||+|
T Consensus 83 ~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~D 162 (262)
T 3def_A 83 GFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQ 162 (262)
T ss_dssp TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTT
T ss_pred CeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcc
Confidence 4578999999941 0 011111245889999877543211 0000 1111225689999999
Q ss_pred CCCc
Q 030407 131 LASA 134 (178)
Q Consensus 131 l~~~ 134 (178)
+.++
T Consensus 163 l~~~ 166 (262)
T 3def_A 163 FSPP 166 (262)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 9643
No 226
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=81.83 E-value=1.3 Score=37.24 Aligned_cols=56 Identities=11% Similarity=-0.065 Sum_probs=36.6
Q ss_pred CceeEEEEecCCCC---------CchhHhHHHHHHHHHhc---------CCCCCEEEEec--ccCCCHHHHHHHHhhh
Q 030407 119 TQADLLVINKTDLA---------SAIGADLAVMERDALRM---------RDGGPFIFAQV--GWVIGIIFTLSITHYI 176 (178)
Q Consensus 119 ~~adiiviNK~Dl~---------~~~~~~~~~~~~~l~~~---------np~a~i~~~SA--~~g~gi~el~~~l~~~ 176 (178)
..+-++|+||.|+. ++ ...+++.+.++++ .+..+++.+|+ +++.|++++.+.+.+.
T Consensus 175 ~~p~~lV~tkpdlllLDEPtsgLD~--~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~ 250 (413)
T 1tq4_A 175 KKEFYFVRTKVDSDITNEADGEPQT--FDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISD 250 (413)
T ss_dssp TCEEEEEECCHHHHHHHHHTTCCTT--CCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHH
T ss_pred CCCeEEEEecCcccccCcccccCCH--HHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHh
Confidence 44679999999975 11 1223333333332 24568999999 6677899999988653
No 227
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=79.90 E-value=4.6 Score=29.17 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=35.0
Q ss_pred CCCCEEEEeCCcchhhhc-c-cccccceEEEEEeCCCCCCCCc--------CCCC-CCCceeEEEEecCCCCCc
Q 030407 72 FKADLLLCESGGDNLAAN-F-SRELADYIIYIIDVSGGDKIPR--------KGGP-GITQADLLVINKTDLASA 134 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~~~-~-~~~~ad~~I~VvD~~~~~~~~~--------~~~~-qi~~adiiviNK~Dl~~~ 134 (178)
..+|+|||++.|. .... . ....+|.+++++.+.... ... .... .-...-.+|+||+|..+.
T Consensus 74 ~~yD~viiD~~~~-~~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~ 145 (206)
T 4dzz_A 74 ADYDFAIVDGAGS-LSVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT 145 (206)
T ss_dssp TTSSEEEEECCSS-SSHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE
T ss_pred CCCCEEEEECCCC-CCHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch
Confidence 4699999999983 2211 1 112368899999886543 211 0110 001122899999996443
No 228
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=77.45 E-value=3.4 Score=34.33 Aligned_cols=53 Identities=9% Similarity=0.058 Sum_probs=41.1
Q ss_pred CceeEEEEecCCC--C-C-chhHhHHHHHHHHHhcCCCCCEEEEeccc---------------------CCCHHHHHHHH
Q 030407 119 TQADLLVINKTDL--A-S-AIGADLAVMERDALRMRDGGPFIFAQVGW---------------------VIGIIFTLSIT 173 (178)
Q Consensus 119 ~~adiiviNK~Dl--~-~-~~~~~~~~~~~~l~~~np~a~i~~~SA~~---------------------g~gi~el~~~l 173 (178)
..+-++++||.|. . + . ..++++.+++++.+|+++++++||+. +.|++.++...
T Consensus 224 ~kp~~y~~Nv~e~~~~~~~~--~~~~~~~~~~~~~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i~~~ 301 (392)
T 1ni3_A 224 AKPVIYLVNMSERDFLRQKN--KYLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTG 301 (392)
T ss_dssp GSCEEEEEECCHHHHTTTCC--SSHHHHHHHHHTTSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred cCceEEEEEecchhhcccch--HHHHHHHHHHHhcCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHHHHH
Confidence 4577999999993 2 1 2 45778888888777889999999986 67888887754
No 229
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=76.03 E-value=3.9 Score=33.78 Aligned_cols=46 Identities=17% Similarity=0.085 Sum_probs=34.4
Q ss_pred eeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 121 ADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 121 adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
+.+++.||+|..+. ++++.+. .....+++|+.++.|+++|.+...+
T Consensus 251 p~i~v~nKid~~~~--eele~l~-------~~~~~~~is~~~e~gLd~Li~~~y~ 296 (376)
T 4a9a_A 251 PAIYVLNKIDSLSI--EELELLY-------RIPNAVPISSGQDWNLDELLQVMWD 296 (376)
T ss_dssp CEEEEEECGGGSCH--HHHHHHT-------TSTTEEECCTTTCTTHHHHHHHHHH
T ss_pred ceEEEEecccccCH--HHHHHHh-------cccchhhhhhhhcccchhHHHHHHH
Confidence 56899999998776 5544332 2346899999999999999886543
No 230
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=75.71 E-value=3.9 Score=34.39 Aligned_cols=144 Identities=17% Similarity=0.098 Sum_probs=70.8
Q ss_pred HHHHHhhc-CCcEEEEEecCC-Cc-hhH--HHHHHcCCCCccceeecccCCCcccccccccccCH-hHHHhhHhhCCCCE
Q 030407 3 ALCKFLRD-KYSLAAVTNDIF-TK-EDG--EFLMRNGALPEERIRAVETGGCPHAAIREDISINL-GPLEELSNLFKADL 76 (178)
Q Consensus 3 ~~~~~~~~-~~~vaVI~nd~g-~~-iD~--~li~~~~~~~~~~~~~l~~GcCc~l~i~~dl~~~l-~~l~~l~~~~~~d~ 76 (178)
++..++.+ +.++.++--|+. .. .+. .+-+..|+ ++.....+.-+ ...+ ..+..+ +..++|+
T Consensus 117 ~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv----~v~~~~~~~~p--------~~i~~~~l~~~-~~~~~Dv 183 (425)
T 2ffh_A 117 KLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGV----PVLEVMDGESP--------ESIRRRVEEKA-RLEARDL 183 (425)
T ss_dssp HHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTC----CEEECCTTCCH--------HHHHHHHHHHH-HHTTCSE
T ss_pred HHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCc----cEEecCCCCCH--------HHHHHHHHHHH-HHCCCCE
Confidence 45556655 489999998887 32 221 11122344 34433221111 1111 233332 2368999
Q ss_pred EEEeCCcchh-----hhc----ccccccceEEEEEeCCCCCCCCc---CCCCCCCceeEEEEecCCCCCchhHhHHHHHH
Q 030407 77 LLCESGGDNL-----AAN----FSRELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLASAIGADLAVMER 144 (178)
Q Consensus 77 iiiEttG~~~-----~~~----~~~~~ad~~I~VvD~~~~~~~~~---~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~ 144 (178)
|||+|.|... ... ......+.+++|+|+..+.+... .+.+.+. -.-+|+||.|..... ..+.+
T Consensus 184 VIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a~~f~~~l~-i~GVIlTKlD~~~~~----g~als 258 (425)
T 2ffh_A 184 ILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG-VTGLVLTKLDGDARG----GAALS 258 (425)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHTC-CCEEEEESGGGCSSC----HHHHH
T ss_pred EEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHHHHHHhcCC-ceEEEEeCcCCcccH----HHHHH
Confidence 9999999411 000 00012477899999875522111 0111111 257899999975441 12222
Q ss_pred HHHhcCCCCCEEEEecccCCCHHH
Q 030407 145 DALRMRDGGPFIFAQVGWVIGIIF 168 (178)
Q Consensus 145 ~l~~~np~a~i~~~SA~~g~gi~e 168 (178)
..... +.|+.++. +|+.+++
T Consensus 259 i~~~~--g~PI~flg--~Ge~~~d 278 (425)
T 2ffh_A 259 ARHVT--GKPIYFAG--VSEKPEG 278 (425)
T ss_dssp HHHHH--CCCEEEEE--CSSSGGG
T ss_pred HHHHH--CCCEEEEe--CCCChhh
Confidence 23322 34676665 3555543
No 231
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=69.23 E-value=3.4 Score=32.26 Aligned_cols=49 Identities=12% Similarity=0.073 Sum_probs=31.5
Q ss_pred cceEEEEEeCC-CCCCCCc-----CCCCCCCceeEEEEecCCCCCchhHhHHHHHHHHH
Q 030407 95 ADYIIYIIDVS-GGDKIPR-----KGGPGITQADLLVINKTDLASAIGADLAVMERDAL 147 (178)
Q Consensus 95 ad~~I~VvD~~-~~~~~~~-----~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~ 147 (178)
++..++++|.+ ++.+..+ ..... ..-++|+||+|..++ .++..+.+.++
T Consensus 112 al~~lllldep~~gL~~lD~~~l~~L~~~--~~vI~Vi~K~D~lt~--~e~~~~k~~i~ 166 (270)
T 3sop_A 112 VHCCLYFISPTGHSLRPLDLEFMKHLSKV--VNIIPVIAKADTMTL--EEKSEFKQRVR 166 (270)
T ss_dssp CCEEEEEECCCSSSCCHHHHHHHHHHHTT--SEEEEEETTGGGSCH--HHHHHHHHHHH
T ss_pred eeeeeEEEecCCCcCCHHHHHHHHHHHhc--CcEEEEEeccccCCH--HHHHHHHHHHH
Confidence 46778889865 4433221 01111 578999999999988 67666655554
No 232
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=68.58 E-value=2.4 Score=35.72 Aligned_cols=60 Identities=15% Similarity=0.100 Sum_probs=36.8
Q ss_pred EEEEEeCCCCCCCCc----CCCCCCCceeEEEEecCCCCCchhHhHHHHHHHHHh-c-CCCCCEEEEec
Q 030407 98 IIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGADLAVMERDALR-M-RDGGPFIFAQV 160 (178)
Q Consensus 98 ~I~VvD~~~~~~~~~----~~~~qi~~adiiviNK~Dl~~~~~~~~~~~~~~l~~-~-np~a~i~~~SA 160 (178)
+.+++|+.++....+ +... -....++|+||+|..++ .++..+.+.+++ + ..+.+|+.+|.
T Consensus 152 v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~--~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 152 LYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAISK--SELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp EEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSCH--HHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred EEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccch--HHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 455667665543221 0111 24467999999999988 788888777775 3 34567888775
No 233
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=66.74 E-value=0.78 Score=37.71 Aligned_cols=89 Identities=6% Similarity=-0.128 Sum_probs=48.9
Q ss_pred CEEEEeCCcchhhh-------------cccccccceEEEEEeCCCCC---CC-CcCCCCCCCceeEEEEecCCCCCchhH
Q 030407 75 DLLLCESGGDNLAA-------------NFSRELADYIIYIIDVSGGD---KI-PRKGGPGITQADLLVINKTDLASAIGA 137 (178)
Q Consensus 75 d~iiiEttG~~~~~-------------~~~~~~ad~~I~VvD~~~~~---~~-~~~~~~qi~~adiiviNK~Dl~~~~~~ 137 (178)
.+.++.|.|..-.. .+.....+..++++|+.... .. ...+......+-++++||.|.+.. .
T Consensus 212 ~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~--~ 289 (368)
T 3h2y_A 212 ESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHR--T 289 (368)
T ss_dssp SCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEE--E
T ss_pred CeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCcccccc--c
Confidence 47899999952111 00011236788888874221 00 000111234466999999999987 6
Q ss_pred hHHHHHHHHHhcCCCCCEEEEecccCCCH
Q 030407 138 DLAVMERDALRMRDGGPFIFAQVGWVIGI 166 (178)
Q Consensus 138 ~~~~~~~~l~~~np~a~i~~~SA~~g~gi 166 (178)
+++...+.+++... ..+.+.++.+++++
T Consensus 290 ~~~~~~~~~~~~~g-~~l~p~~~~~~~~~ 317 (368)
T 3h2y_A 290 KLEKADELYKNHAG-DLLSPPTPEELENM 317 (368)
T ss_dssp EHHHHHHHHHHHBT-TTBCSSCHHHHHTS
T ss_pred cHHHHHHHHHHHhC-CccCCCchhhHhhc
Confidence 66776666665432 24555555544444
No 234
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=66.55 E-value=1 Score=37.03 Aligned_cols=91 Identities=5% Similarity=-0.092 Sum_probs=50.6
Q ss_pred CEEEEeCCcchhhh---c---------cc-ccccceEEEEEeCCCCC---CCC-cCCCCCCCceeEEEEecCCCCCchhH
Q 030407 75 DLLLCESGGDNLAA---N---------FS-RELADYIIYIIDVSGGD---KIP-RKGGPGITQADLLVINKTDLASAIGA 137 (178)
Q Consensus 75 d~iiiEttG~~~~~---~---------~~-~~~ad~~I~VvD~~~~~---~~~-~~~~~qi~~adiiviNK~Dl~~~~~~ 137 (178)
.+.++.|.|..-.. . +. ....+.+++++++.+.. ... ..+......+-++++||.|.+.. .
T Consensus 213 ~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~--~ 290 (369)
T 3ec1_A 213 GATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHR--T 290 (369)
T ss_dssp TCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEE--E
T ss_pred CeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCccccc--c
Confidence 57899999942111 0 00 11247789999984321 000 00111124456999999999876 5
Q ss_pred hHHHHHHHHHhcCCCCCEEEEecccCCCHHH
Q 030407 138 DLAVMERDALRMRDGGPFIFAQVGWVIGIIF 168 (178)
Q Consensus 138 ~~~~~~~~l~~~np~a~i~~~SA~~g~gi~e 168 (178)
+++...+.+++... ..+.+.++.+.+++.+
T Consensus 291 ~~~~~~~~~~~~~g-~~l~p~~~~~~~~~~~ 320 (369)
T 3ec1_A 291 KLEKADSLYANQLG-ELLSPPSKRYAAEFPP 320 (369)
T ss_dssp EGGGHHHHHHHHBT-TTBCSSCGGGTTTCCC
T ss_pred cHHHHHHHHHHhcC-CccCCCCchhhhhccC
Confidence 55555655554432 3566666666655543
No 235
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=65.58 E-value=2.2 Score=34.19 Aligned_cols=90 Identities=12% Similarity=0.043 Sum_probs=48.9
Q ss_pred hCCCCEEEEeCCcchhh------------hcc---cccccceEEEEEeCCCCCCCCc---CCCCCCCceeEEEEecCCCC
Q 030407 71 LFKADLLLCESGGDNLA------------ANF---SRELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLA 132 (178)
Q Consensus 71 ~~~~d~iiiEttG~~~~------------~~~---~~~~ad~~I~VvD~~~~~~~~~---~~~~qi~~adiiviNK~Dl~ 132 (178)
..+||+|++.|.|.... ... .+...+.+++|+|+..+.+... .+.+. ..-+-+|+||.|-.
T Consensus 184 ~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~a~~~~~~-~~i~gvVlTk~D~~ 262 (306)
T 1vma_A 184 ARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEA-VNVTGIILTKLDGT 262 (306)
T ss_dssp HTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHH-SCCCEEEEECGGGC
T ss_pred hcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHHHHHHHhc-CCCCEEEEeCCCCc
Confidence 45899999999994110 001 1112477889999864321110 01000 11257899999976
Q ss_pred CchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHH
Q 030407 133 SAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFT 169 (178)
Q Consensus 133 ~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el 169 (178)
... ..+.+..... +.|+.+++ +|++++++
T Consensus 263 ~~g----G~~l~~~~~~--~~Pi~~i~--~Ge~~~dl 291 (306)
T 1vma_A 263 AKG----GITLAIAREL--GIPIKFIG--VGEKAEDL 291 (306)
T ss_dssp SCT----THHHHHHHHH--CCCEEEEE--CSSSGGGE
T ss_pred cch----HHHHHHHHHH--CCCEEEEe--CCCChhhc
Confidence 442 2234444443 35777775 36655543
No 236
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=63.57 E-value=1.7 Score=37.55 Aligned_cols=90 Identities=18% Similarity=0.127 Sum_probs=49.7
Q ss_pred hCCCCEEEEeCCcch-----hh-------h---cccccccceEEEEEeCCCCCCCCc---CCCCCCCceeEEEEecCCCC
Q 030407 71 LFKADLLLCESGGDN-----LA-------A---NFSRELADYIIYIIDVSGGDKIPR---KGGPGITQADLLVINKTDLA 132 (178)
Q Consensus 71 ~~~~d~iiiEttG~~-----~~-------~---~~~~~~ad~~I~VvD~~~~~~~~~---~~~~qi~~adiiviNK~Dl~ 132 (178)
..++|+|+|+|.|.. +. . .+.+...+-+++++|++.+.+... .+...+ .-+.+|+||.|-.
T Consensus 373 ~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~~~~-~itgvIlTKLD~t 451 (503)
T 2yhs_A 373 ARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV-GLTGITLTKLDGT 451 (503)
T ss_dssp HTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHHHHT-CCSEEEEECGGGC
T ss_pred hcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHHhhc-CCCEEEEEcCCCc
Confidence 468999999999941 00 0 011111356888999877632211 010001 1257999999964
Q ss_pred CchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHH
Q 030407 133 SAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFT 169 (178)
Q Consensus 133 ~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el 169 (178)
.. ...+...+... +.||.++. +|+++++|
T Consensus 452 ak----gG~~lsi~~~~--~~PI~fig--~Ge~vdDL 480 (503)
T 2yhs_A 452 AK----GGVIFSVADQF--GIPIRYIG--VGERIEDL 480 (503)
T ss_dssp SC----CTHHHHHHHHH--CCCEEEEE--CSSSGGGE
T ss_pred cc----ccHHHHHHHHH--CCCEEEEe--cCCChhhc
Confidence 33 22334444433 24777754 57777654
No 237
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=63.54 E-value=5.1 Score=31.73 Aligned_cols=85 Identities=8% Similarity=0.055 Sum_probs=46.4
Q ss_pred CCCCEEEEeCCcchhh---------hcccccccceEEEEEeCCCCCCCC----cCCCCCCCceeEEEEecCCCCCchhHh
Q 030407 72 FKADLLLCESGGDNLA---------ANFSRELADYIIYIIDVSGGDKIP----RKGGPGITQADLLVINKTDLASAIGAD 138 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~---------~~~~~~~ad~~I~VvD~~~~~~~~----~~~~~qi~~adiiviNK~Dl~~~~~~~ 138 (178)
.++|+||+.|.|.... ........+.+++|+|++++.... ..+. .+. -.-+|+||.|.....
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~-~l~-~~giVltk~D~~~~~--- 255 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFS-SVP-VNQYIFTKIDETTSL--- 255 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTS-SSC-CCEEEEECTTTCSCC---
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHh-cCC-CCEEEEeCCCcccch---
Confidence 4799999999994211 011111136678999987652211 1111 222 256788999986542
Q ss_pred HHHHHHHHHhcCCCCCEEEEecccCCCH
Q 030407 139 LAVMERDALRMRDGGPFIFAQVGWVIGI 166 (178)
Q Consensus 139 ~~~~~~~l~~~np~a~i~~~SA~~g~gi 166 (178)
..+.+.+... +.|+.+++ +|+++
T Consensus 256 -g~~~~~~~~~--~~pi~~i~--~ge~v 278 (296)
T 2px0_A 256 -GSVFNILAES--KIGVGFMT--NGQNV 278 (296)
T ss_dssp -HHHHHHHHTC--SCCCSEEC--CSSCT
T ss_pred -hHHHHHHHHH--CcCEEEEE--CCCCC
Confidence 2344444433 34555544 46665
No 238
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=57.91 E-value=15 Score=28.30 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=22.0
Q ss_pred CCCCEEEEeCCcchhhhc--ccccccceEEEEEeCC
Q 030407 72 FKADLLLCESGGDNLAAN--FSRELADYIIYIIDVS 105 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~~~--~~~~~ad~~I~VvD~~ 105 (178)
..||+|||++.+. +... .....+|.+|+++.+.
T Consensus 102 ~~yD~viiD~p~~-~~~~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 102 AECDFILIDTPGG-DSAITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp HHCSEEEEECCSS-CCHHHHHHHHTCSEEEEEEESS
T ss_pred hcCCEEEEcCCCC-ccHHHHHHHHHCCEEEEEEcCC
Confidence 3699999999983 2211 1112468899999875
No 239
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=53.61 E-value=26 Score=28.65 Aligned_cols=41 Identities=10% Similarity=0.038 Sum_probs=28.2
Q ss_pred ceeEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEeccc
Q 030407 120 QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGW 162 (178)
Q Consensus 120 ~adiiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~ 162 (178)
.+-+++.||.|..-......+.++++..+. +++++++||+.
T Consensus 200 KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~--~~~~i~~sA~~ 240 (363)
T 1jal_A 200 KPTMYIANVNEDGFENNPYLDRVREIAAKE--GAVVVPVCAAI 240 (363)
T ss_dssp SCEEEEEECCTTCSSSCHHHHHHHHHHHHT--TCEEEEECHHH
T ss_pred CcEEEEEecccccccccHHHHHHHHHHHHc--CCCEEEechHH
Confidence 678999999996421114556666666543 46899999875
No 240
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=48.03 E-value=12 Score=30.11 Aligned_cols=46 Identities=7% Similarity=0.022 Sum_probs=35.6
Q ss_pred eEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhh
Q 030407 122 DLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY 175 (178)
Q Consensus 122 diiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~ 175 (178)
-.||++|.|.+++ +-++. .++. +.|++.++..+.+++..+..+|..
T Consensus 82 P~IIltrg~~~pe--elie~----A~~~--~IPVL~T~~~ts~~~~~l~~~l~~ 127 (314)
T 1ko7_A 82 PAIIVTRDLEPPE--ELIEA----AKEH--ETPLITSKIATTQLMSRLTTFLEH 127 (314)
T ss_dssp CCEEECTTCCCCH--HHHHH----HHHT--TCCEEECCSCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCH--HHHHH----HHHC--CCeEEEECCchhHHHHHHHHHHHH
Confidence 3899999999866 43333 3332 679999999999999999888875
No 241
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=46.62 E-value=29 Score=26.06 Aligned_cols=35 Identities=23% Similarity=0.412 Sum_probs=22.0
Q ss_pred CCCCEEEEeCCcchhhhcccc-----cc----cceEEEEEeCCCC
Q 030407 72 FKADLLLCESGGDNLAANFSR-----EL----ADYIIYIIDVSGG 107 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~~~~~~-----~~----ad~~I~VvD~~~~ 107 (178)
.++|+++||++| .+..+... +. ..-+|.|+++..+
T Consensus 109 ~~~D~vlIEgag-gl~~p~~~~~~~adla~~l~~pviLV~~~~~~ 152 (228)
T 3of5_A 109 QDLDILFIEGAG-GLLTPYSDHTTQLDLIKALQIPVLLVSAIKVG 152 (228)
T ss_dssp SSCSEEEEEEEE-ETTCBSSSSCBHHHHHHHHTCCEEEEEECSTT
T ss_pred ccCCEEEEECCC-ccccccccchhHHHHHHHcCCCEEEEEcCCcc
Confidence 579999999998 33322111 11 1348889998654
No 242
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=42.66 E-value=45 Score=25.44 Aligned_cols=92 Identities=15% Similarity=0.120 Sum_probs=48.5
Q ss_pred CCCCEEEEeCCcchhhhcccc-----cc----cceEEEEEeCCCCCCCC-----c-CCCCCCCceeEEEEecCCCCCchh
Q 030407 72 FKADLLLCESGGDNLAANFSR-----EL----ADYIIYIIDVSGGDKIP-----R-KGGPGITQADLLVINKTDLASAIG 136 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~~~~~~-----~~----ad~~I~VvD~~~~~~~~-----~-~~~~qi~~adiiviNK~Dl~~~~~ 136 (178)
.++|+++||.+| ++..+... +. ..-+|.|+++..+--.. . .....+. -=+|+||++-...
T Consensus 130 ~~~D~vlIEGag-Gl~~pl~~~~~~adlA~~l~~pVILV~~~~lg~i~~~~lt~~~l~~~g~~--~GvIlN~v~~~~~-- 204 (242)
T 3qxc_A 130 KTYDLVIVEGAG-GLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLD--YKIAINLKGNNTA-- 204 (242)
T ss_dssp GTCSEEEEECCS-CTTCBSSSSCBHHHHHHHHTCEEEEEECCSTTHHHHHHHHHHHHHTSSSC--EEEEECCCTTCCH--
T ss_pred hcCCEEEEECCC-CccccccccchHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCC--EEEEEeCCCCccc--
Confidence 479999999999 44433221 11 13488899886541000 0 0112344 5788999985432
Q ss_pred HhHHHHHHHHHhc--CCCCCEEEEecccCCCHHHHHHHH
Q 030407 137 ADLAVMERDALRM--RDGGPFIFAQVGWVIGIIFTLSIT 173 (178)
Q Consensus 137 ~~~~~~~~~l~~~--np~a~i~~~SA~~g~gi~el~~~l 173 (178)
..+...-++++. ++..+++..- ..++.|.+.+
T Consensus 205 -~~~~~~p~le~~~~~~~~~~~~~~----~~~~~l~~~~ 238 (242)
T 3qxc_A 205 -FHSISLPYIELFNTRSNNPIVIFQ----QSLKVLMSFA 238 (242)
T ss_dssp -HHHHTHHHHHHHHHHCSSCCEEGG----GCHHHHHHHH
T ss_pred -hhhhhHHHHHHhcCcccCCceecc----ccHHHHHHHH
Confidence 223333333333 2445666542 4556666544
No 243
>2g04_A Probable fatty-acid-COA racemase FAR; isomerase; 2.70A {Mycobacterium tuberculosis}
Probab=41.34 E-value=42 Score=27.30 Aligned_cols=80 Identities=16% Similarity=0.059 Sum_probs=43.8
Q ss_pred HhhCCCCEEEEeCCcchhh--hcccccccceEEEEEeCCCCCCCCcCCCCCCCceeEEEEecCCCCCchhHhHHHH---H
Q 030407 69 SNLFKADLLLCESGGDNLA--ANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVM---E 143 (178)
Q Consensus 69 ~~~~~~d~iiiEttG~~~~--~~~~~~~ad~~I~VvD~~~~~~~~~~~~~qi~~adiiviNK~Dl~~~~~~~~~~~---~ 143 (178)
+...+-|+|=||..|-... ..|......-.-+.+|..... +...+.++.||++|=|=- + ..++++ .
T Consensus 28 LAdlGAeVIKVE~pgd~~~~~~~f~~~NR~Krsi~LDLk~~~---~~l~~Lv~~ADVvienfr----P--G~~~rlGl~y 98 (359)
T 2g04_A 28 LADLGADVVRVRRPGGLTMPSEDRDLLHRGKRIVDLDVKTQP---QAMLELAAKADVLLDCFR----P--GTCERLGIGP 98 (359)
T ss_dssp HHHTTCEEEEEECTTCCCSSCGGGCGGGTTCEEEECCC---C---CTTHHHHTTCSEEEECSC----T--THHHHSSCSH
T ss_pred HHHcCCcEEEEcCCCCCcccchhHHHcCCCCeEEEeeCCCHH---HHHHHHHHhCCEEEeCCC----c--cHHHHhCCCH
Confidence 3466899999999862111 112211234456667765544 233345788999998832 1 222222 2
Q ss_pred HHHHhcCCCCCEEEEe
Q 030407 144 RDALRMRDGGPFIFAQ 159 (178)
Q Consensus 144 ~~l~~~np~a~i~~~S 159 (178)
+.++++||. ++.+|
T Consensus 99 e~L~~~nP~--LIy~s 112 (359)
T 2g04_A 99 DDCASVNPR--LIFAR 112 (359)
T ss_dssp HHHHHHCTT--CEEEE
T ss_pred HHHHHhCCC--eEEEE
Confidence 456778995 45554
No 244
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=37.79 E-value=27 Score=28.99 Aligned_cols=44 Identities=9% Similarity=-0.010 Sum_probs=28.6
Q ss_pred ceeEEEEecCC--CCCchhHhHHHHHHHHHhcCCCCCEEEEecccC
Q 030407 120 QADLLVINKTD--LASAIGADLAVMERDALRMRDGGPFIFAQVGWV 163 (178)
Q Consensus 120 ~adiiviNK~D--l~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g 163 (178)
.+-++++||.+ ..+.....++.+.+++...+|+++++++||+..
T Consensus 223 KPviy~~Nv~e~~~~~~~n~~~~~v~~~~~~~~~~~~~v~~sa~~E 268 (396)
T 2ohf_A 223 KPMVYLVNLSEKDYIRKKNKWLIKIKEWVDKYDPGALVIPFSGALE 268 (396)
T ss_dssp SCEEEEEECCHHHHHHTCCHHHHHHHHHHHHHSTTCEEEEECHHHH
T ss_pred CceEEEEEecHHHhcccccHHHHHHHHHHHhhCCCCeEEEEEcHHH
Confidence 45688999973 321101345566766665557889999999853
No 245
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=37.00 E-value=59 Score=24.92 Aligned_cols=104 Identities=17% Similarity=0.155 Sum_probs=49.2
Q ss_pred HHHHHhhcC-CcEEEEE---ecCC-CchhHHHHHHc-CCCCccceeecccCCCcccccc-ccc-ccCHhHHHhhHh--hC
Q 030407 3 ALCKFLRDK-YSLAAVT---NDIF-TKEDGEFLMRN-GALPEERIRAVETGGCPHAAIR-EDI-SINLGPLEELSN--LF 72 (178)
Q Consensus 3 ~~~~~~~~~-~~vaVI~---nd~g-~~iD~~li~~~-~~~~~~~~~~l~~GcCc~l~i~-~dl-~~~l~~l~~l~~--~~ 72 (178)
.+++.++++ +|+++.. .-.+ ...|..+++.. |.....+...+..-...++.-+ +.- ...++.+.+..+ ..
T Consensus 46 gL~~~l~~~G~~V~~fKPv~~g~~~~~~D~~~~~~~~g~~~~~~~~~~~~p~sP~~aa~~~~~~~~~~~~i~~~~~~l~~ 125 (251)
T 3fgn_A 46 ALASAARQAGIDVAVCKPVQTGTARGDDDLAEVGRLAGVTQLAGLARYPQPMAPAAAAEHAGMALPARDQIVRLIADLDR 125 (251)
T ss_dssp HHHHHHHHTTCCEEEEEEEECCGGGTCCHHHHHHHHHCCCEEEEEEECSSSSCHHHHHHHTTCCCCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHCCCeEEEEeeeecCCCCCCHHHHHHHHHcCCCCCCCCeeECCCCChHHHHHHcCCCCCCHHHHHHHHHHHHh
Confidence 466777654 9999986 2222 34788887653 3310001111110001111000 000 012233433332 24
Q ss_pred CCCEEEEeCCcchhhhcccc------c----ccceEEEEEeCCCC
Q 030407 73 KADLLLCESGGDNLAANFSR------E----LADYIIYIIDVSGG 107 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~~~~~------~----~ad~~I~VvD~~~~ 107 (178)
++|+++||.+| .+..+... + ...-+|+|+|+..+
T Consensus 126 ~~D~vlIEGag-Gl~~pl~~~~~~~adla~~l~~pVILV~~~~~g 169 (251)
T 3fgn_A 126 PGRLTLVEGAG-GLLVELAEPGVTLRDVAVDVAAAALVVVTADLG 169 (251)
T ss_dssp TTCEEEEECSS-STTCEEETTTEEHHHHHHHTTCEEEEEECSSTT
T ss_pred cCCEEEEECCC-CCcCCcCcccchHHHHHHHcCCCEEEEEcCCCc
Confidence 79999999998 44322111 1 12458899998653
No 246
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=36.84 E-value=73 Score=25.91 Aligned_cols=94 Identities=13% Similarity=0.029 Sum_probs=51.2
Q ss_pred CCCCEEEEeCCcchhhhcccc---c-----ccceEEEEEeCCCCCC--CCc-CCC-------------------CCCCce
Q 030407 72 FKADLLLCESGGDNLAANFSR---E-----LADYIIYIIDVSGGDK--IPR-KGG-------------------PGITQA 121 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~~~~~~---~-----~ad~~I~VvD~~~~~~--~~~-~~~-------------------~qi~~a 121 (178)
.++|+++||-.| ++..|... . ..+.+|++.++..+.- .+. ..+ ..++ -
T Consensus 224 ~~~d~vlVEGqG-gl~~P~~~~t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l~~~~~~~~~~~-V 301 (349)
T 2obn_A 224 KNYDILHIEGQG-SLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGTVP-V 301 (349)
T ss_dssp TTCSEEEECCCC-CTTSTTCCTHHHHHHHHCCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHHHHTTTTSCCCC-E
T ss_pred cCCCEEEEeCCC-cccCcChHhHHHHHHHcCCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHHHHhhccCCCCc-E
Confidence 379999999999 45433311 1 1377899999866432 111 001 0111 1
Q ss_pred eEEEEecCCCCCchhHhHHHHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHh
Q 030407 122 DLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH 174 (178)
Q Consensus 122 diiviNK~Dl~~~~~~~~~~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~ 174 (178)
-=+++|..++.+. +.+...+.+++..+ .|++ ..-..|.+.|++.|.
T Consensus 302 ~Gi~lN~~~~~~~---~~~~~~~~ie~~~g-lPv~---d~~r~g~~~l~~~~~ 347 (349)
T 2obn_A 302 VGIALNTAHLDEY---AAKEAIAHTIAETG-LPCT---DVVRFGADVLLDAVM 347 (349)
T ss_dssp EEEEEECTTSCHH---HHHHHHHHHHHHHC-SCEE---CHHHHCSHHHHHHHH
T ss_pred EEEEEECCCCCHH---HHHHHHHHHHHHHC-CCEE---EEecCCHHHHHHHHh
Confidence 2466898887544 33444455554432 3333 233458888887664
No 247
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=35.58 E-value=39 Score=25.05 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=22.1
Q ss_pred CCCEEEEeCCcchhhhcc--cccccceEEEEEeCCC
Q 030407 73 KADLLLCESGGDNLAANF--SRELADYIIYIIDVSG 106 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~~~--~~~~ad~~I~VvD~~~ 106 (178)
.||+|||++.+ .+.... ....+|.+++++.+..
T Consensus 113 ~yD~viiD~p~-~~~~~~~~~l~~ad~vi~v~~~~~ 147 (260)
T 3q9l_A 113 DFEFIVCDSPA-GIETGALMALYFADEAIITTNPEV 147 (260)
T ss_dssp TCSEEEEECCS-SSSHHHHHHHHTCSEEEEEECSSH
T ss_pred CCCEEEEcCCC-CCCHHHHHHHHhCCEEEEEecCCh
Confidence 79999999988 332111 1124688999998753
No 248
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=33.71 E-value=33 Score=26.73 Aligned_cols=63 Identities=8% Similarity=-0.043 Sum_probs=34.7
Q ss_pred CCCCEEEEeCCcchhh--hcccccccceEEEEEeCCCCCCCCc-CCCCCC---C-ceeEEEEecCCCCCc
Q 030407 72 FKADLLLCESGGDNLA--ANFSRELADYIIYIIDVSGGDKIPR-KGGPGI---T-QADLLVINKTDLASA 134 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~--~~~~~~~ad~~I~VvD~~~~~~~~~-~~~~qi---~-~adiiviNK~Dl~~~ 134 (178)
..||+|||+|.+.... .......+|.+++|+.+........ .....+ . .-.-+|+||+|.-..
T Consensus 200 ~~yD~VIIDtpp~~~~~da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~~ 269 (286)
T 3la6_A 200 KNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRAS 269 (286)
T ss_dssp HHCSEEEEECCCTTTCTHHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCCC
T ss_pred hCCCEEEEcCCCCcchHHHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCcccccc
Confidence 3699999999983211 1111234799999998764321100 000001 1 113688999986543
No 249
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=33.38 E-value=53 Score=23.95 Aligned_cols=71 Identities=15% Similarity=0.177 Sum_probs=37.3
Q ss_pred hCCCCEEEEeCCcchhhhcc--cccccceEEEEEeCCCCCCCC-c---CCCCCCC-ceeEEEEecCCCCCchhHhHHHHH
Q 030407 71 LFKADLLLCESGGDNLAANF--SRELADYIIYIIDVSGGDKIP-R---KGGPGIT-QADLLVINKTDLASAIGADLAVME 143 (178)
Q Consensus 71 ~~~~d~iiiEttG~~~~~~~--~~~~ad~~I~VvD~~~~~~~~-~---~~~~qi~-~adiiviNK~Dl~~~~~~~~~~~~ 143 (178)
..+||+|||++.+ .+.... ....+|.+++++.+....-.. . ...+... ..-.+|+||.+ +. ...+.+.
T Consensus 129 ~~~yD~viiD~pp-~~~~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~--~~--~~~~~~~ 203 (254)
T 3kjh_A 129 LDKKEAVVMDMGA-GIEHLTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVR--NI--KEEKLIK 203 (254)
T ss_dssp HTCCSEEEEEECT-TCTTCCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEEC--CH--HHHHHHH
T ss_pred cCCCCEEEEeCCC-cccHHHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCC--Ch--hHHHHHH
Confidence 4589999999988 222111 112468899999874321000 0 0000111 12468999999 23 3344444
Q ss_pred HHH
Q 030407 144 RDA 146 (178)
Q Consensus 144 ~~l 146 (178)
+.+
T Consensus 204 ~~~ 206 (254)
T 3kjh_A 204 KHL 206 (254)
T ss_dssp HHS
T ss_pred HHh
Confidence 444
No 250
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=32.71 E-value=29 Score=26.14 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=22.7
Q ss_pred CCCCEEEEeCCcchhhhc--ccccccceEEEEEeCCC
Q 030407 72 FKADLLLCESGGDNLAAN--FSRELADYIIYIIDVSG 106 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~~~--~~~~~ad~~I~VvD~~~ 106 (178)
..||+|||++.+. +... .....+|.+++++.+..
T Consensus 110 ~~yD~iiiD~pp~-~~~~~~~~l~~aD~viiv~~~~~ 145 (257)
T 1wcv_1 110 EGYDLVLLDAPPS-LSPLTLNALAAAEGVVVPVQAEY 145 (257)
T ss_dssp TTCSEEEEECCSS-CCHHHHHHHHHCSEEEEEEESST
T ss_pred cCCCEEEEeCCCC-CCHHHHHHHHHCCeEEEEecCch
Confidence 5799999999983 2111 01123689999998754
No 251
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=31.28 E-value=38 Score=26.46 Aligned_cols=36 Identities=8% Similarity=-0.012 Sum_probs=23.5
Q ss_pred CCCCEEEEeCCcchh-h-hcccccccceEEEEEeCCCC
Q 030407 72 FKADLLLCESGGDNL-A-ANFSRELADYIIYIIDVSGG 107 (178)
Q Consensus 72 ~~~d~iiiEttG~~~-~-~~~~~~~ad~~I~VvD~~~~ 107 (178)
..||+|||+|.+... . .......+|.+++|+.+...
T Consensus 212 ~~yD~VIIDtpp~~~~~d~~~l~~~ad~vilV~~~~~~ 249 (299)
T 3cio_A 212 DHYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLN 249 (299)
T ss_dssp HHCSEEEEECCCTTTCTHHHHHGGGCSEEEEEEETTTS
T ss_pred hCCCEEEEcCCCCchhHHHHHHHHHCCEEEEEEcCCCC
Confidence 369999999999421 1 11112346889999987543
No 252
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=30.57 E-value=34 Score=25.71 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=21.9
Q ss_pred CCCCEEEEeCCcch----hhhcccccccceEEEEEeCC
Q 030407 72 FKADLLLCESGGDN----LAANFSRELADYIIYIIDVS 105 (178)
Q Consensus 72 ~~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~ 105 (178)
..||+|||++.|.. +..+.....+|.+++++.+.
T Consensus 114 ~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~ 151 (269)
T 1cp2_A 114 DDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE 151 (269)
T ss_dssp TTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS
T ss_pred cCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCc
Confidence 36999999998831 11111112468899998874
No 253
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=29.78 E-value=42 Score=24.50 Aligned_cols=62 Identities=10% Similarity=-0.029 Sum_probs=33.3
Q ss_pred CCCCEEEEeCCcchhhhcc--cccccceEEEEEeCCCCCCCC--c--CCCCCCC-ceeEEEEecCCCCCc
Q 030407 72 FKADLLLCESGGDNLAANF--SRELADYIIYIIDVSGGDKIP--R--KGGPGIT-QADLLVINKTDLASA 134 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~~~~--~~~~ad~~I~VvD~~~~~~~~--~--~~~~qi~-~adiiviNK~Dl~~~ 134 (178)
..+|+|||++.+. +.... ....+|.+++++.+....-.. . ....+.. .---+|+||.+-...
T Consensus 110 ~~yD~viiD~~~~-~~~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~ 178 (237)
T 1g3q_A 110 DKFDFILIDCPAG-LQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDR 178 (237)
T ss_dssp GGCSEEEEECCSS-SSHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCTT
T ss_pred hcCCEEEEECCCC-cCHHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcccc
Confidence 4699999999882 22111 112468889998875321000 0 0000011 123689999996543
No 254
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=27.68 E-value=63 Score=24.27 Aligned_cols=59 Identities=12% Similarity=0.030 Sum_probs=31.9
Q ss_pred CCCCEEEEeCCcchhhh-cc---cccccceEEEEEeCCCCCCCC--c--CCCCCCCceeE-EEEecCCC
Q 030407 72 FKADLLLCESGGDNLAA-NF---SRELADYIIYIIDVSGGDKIP--R--KGGPGITQADL-LVINKTDL 131 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~~-~~---~~~~ad~~I~VvD~~~~~~~~--~--~~~~qi~~adi-iviNK~Dl 131 (178)
..||+|||++.+. +.. .. ....+|.+++++.+....... . ..........+ +|+||.|.
T Consensus 127 ~~yD~ViID~pp~-~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPG-TGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSS-SSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCC-CchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 5799999999982 221 11 111358888888765432100 0 00011122234 89999874
No 255
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=25.59 E-value=46 Score=25.39 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=21.8
Q ss_pred CCCCEEEEeCCcch----hhhcccccccceEEEEEeCC
Q 030407 72 FKADLLLCESGGDN----LAANFSRELADYIIYIIDVS 105 (178)
Q Consensus 72 ~~~d~iiiEttG~~----~~~~~~~~~ad~~I~VvD~~ 105 (178)
..||+|||+|.|.. +..+.....+|.+++++.+.
T Consensus 117 ~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~ 154 (289)
T 2afh_E 117 DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE 154 (289)
T ss_dssp TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS
T ss_pred cCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCC
Confidence 37999999998831 11111112468899888764
No 256
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=25.54 E-value=36 Score=26.18 Aligned_cols=61 Identities=11% Similarity=0.201 Sum_probs=32.9
Q ss_pred CCCCEEEEeCCcchhh-hc-ccccccceEEEEEeCCCCCCCCc-CC---CCCCCcee-EEEEecCCCC
Q 030407 72 FKADLLLCESGGDNLA-AN-FSRELADYIIYIIDVSGGDKIPR-KG---GPGITQAD-LLVINKTDLA 132 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~-~~-~~~~~ad~~I~VvD~~~~~~~~~-~~---~~qi~~ad-iiviNK~Dl~ 132 (178)
..||+|||+|.+.... .. .....+|.+++|+.+........ .. ..+..... -+|+||+|..
T Consensus 190 ~~yD~VIIDtpp~~~~~d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 190 MNYNFVIIDTPPVNTVTDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HHCSEEEEECCCTTTCSHHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred hCCCEEEEeCCCCchHHHHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 3699999999983211 11 11123689999998754321100 00 01112222 3889999864
No 257
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=25.05 E-value=83 Score=25.14 Aligned_cols=34 Identities=9% Similarity=-0.006 Sum_probs=21.6
Q ss_pred CCCCEEEEeCCcc-hhhhcccccccceEEEEEeCC
Q 030407 72 FKADLLLCESGGD-NLAANFSRELADYIIYIIDVS 105 (178)
Q Consensus 72 ~~~d~iiiEttG~-~~~~~~~~~~ad~~I~VvD~~ 105 (178)
..||+|||.|... +.........+|.+|+++.+.
T Consensus 152 ~~yD~VIID~pP~l~~~~~~aL~~aD~viip~~~~ 186 (361)
T 3pg5_A 152 DRYDVIFFDVGPSLGPFNRTVLLGCDAFVTPTATD 186 (361)
T ss_dssp TCCSEEEEECCSCCSHHHHHHHTTCSEEEEEECCS
T ss_pred cCCCEEEEECCCCcCHHHHHHHHHCCEEEEEecCC
Confidence 3899999999962 111111112369999999874
No 258
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=24.64 E-value=59 Score=20.28 Aligned_cols=36 Identities=11% Similarity=-0.080 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCCCCEEEEecccCCCHHHHHHHHhhh
Q 030407 141 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI 176 (178)
Q Consensus 141 ~~~~~l~~~np~a~i~~~SA~~g~gi~el~~~l~~~ 176 (178)
.+++.+.+....--.+.+||.+.+.-.+|++.+.++
T Consensus 37 elekalaragarnvqitisaendeqakelleliarl 72 (96)
T 2jvf_A 37 ELEKALARAGARNVQITISAENDEQAKELLELIARL 72 (96)
T ss_dssp HHHHHHHHHTCSEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccceEEEEEecChHHHHHHHHHHHHH
Confidence 344444333333346788999999999998887664
No 259
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=24.43 E-value=54 Score=23.70 Aligned_cols=12 Identities=42% Similarity=0.617 Sum_probs=10.9
Q ss_pred CCCCEEEEeCCc
Q 030407 72 FKADLLLCESGG 83 (178)
Q Consensus 72 ~~~d~iiiEttG 83 (178)
.++|+||||+.|
T Consensus 107 ~~yD~viID~p~ 118 (224)
T 1byi_A 107 QQADWVLVEGAG 118 (224)
T ss_dssp TTCSEEEEECSS
T ss_pred HhCCEEEEEcCC
Confidence 479999999998
No 260
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=23.40 E-value=53 Score=24.46 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=33.1
Q ss_pred CCCCEEEEeCCcchhhhcc--cccccceEEEEEeCCCCCCCC-cCCCCCC---C-ceeEEEEecCCCCCc
Q 030407 72 FKADLLLCESGGDNLAANF--SRELADYIIYIIDVSGGDKIP-RKGGPGI---T-QADLLVINKTDLASA 134 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~~~~--~~~~ad~~I~VvD~~~~~~~~-~~~~~qi---~-~adiiviNK~Dl~~~ 134 (178)
..+|+|||++.+. +.... ....+|.+++++.+....-.. ......+ . ..--+|+||.|-...
T Consensus 109 ~~yD~viiD~~~~-~~~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~ 177 (263)
T 1hyq_A 109 ESTDILLLDAPAG-LERSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLGI 177 (263)
T ss_dssp HTCSEEEEECCSS-SSHHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTTH
T ss_pred hhCCEEEEeCCCC-CChHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcccc
Confidence 4799999999972 22111 112368888888764321000 0000001 1 123589999996544
No 261
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=22.96 E-value=88 Score=23.32 Aligned_cols=34 Identities=18% Similarity=0.322 Sum_probs=22.4
Q ss_pred CCCCEEEEeCCcchhhhc--ccccccceEEEEEeCCC
Q 030407 72 FKADLLLCESGGDNLAAN--FSRELADYIIYIIDVSG 106 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~~~--~~~~~ad~~I~VvD~~~ 106 (178)
..||+|||++.+. +... .....+|.+++++.+..
T Consensus 143 ~~yD~viiD~pp~-~~~~~~~~l~~aD~vivv~~~~~ 178 (267)
T 3k9g_A 143 YKYDYIVIDTNPS-LDVTLKNALLCSDYVIIPMTAEK 178 (267)
T ss_dssp TTCSEEEEEECSS-CSHHHHHHHTTCSEEEEEEESCT
T ss_pred cCCCEEEEECcCC-ccHHHHHHHHHCCeEEEEeCCCh
Confidence 4799999999882 2111 11123689999998754
No 262
>1g1p_A Conotoxin EVIA; three disulfide linkages, CIS/trans isomerism of Leu12- Pro13 peptide bond, hydroxyproline; HET: HYP; NMR {Synthetic} SCOP: g.3.6.1 PDB: 1g1z_A*
Probab=22.04 E-value=29 Score=17.53 Aligned_cols=9 Identities=22% Similarity=0.486 Sum_probs=6.2
Q ss_pred ecccCCCcc
Q 030407 43 AVETGGCPH 51 (178)
Q Consensus 43 ~l~~GcCc~ 51 (178)
-|.||-||+
T Consensus 14 ilknglccs 22 (33)
T 1g1p_A 14 ILKNGLCCS 22 (33)
T ss_dssp SSSCCCBTT
T ss_pred hhcCCcccC
Confidence 366777885
No 263
>2yim_A Probable alpha-methylacyl-COA racemase MCR (2-methylacyl-COA racemase) (2-arylpropionyl-COA...; isomerase, methyl-COA racemase; HET: MC4; 1.41A {Mycobacterium tuberculosis} PDB: 2gce_A* 1x74_A* 2gd0_A* 2gd2_A* 2gd6_A* 2gci_A*
Probab=21.76 E-value=59 Score=26.46 Aligned_cols=81 Identities=15% Similarity=0.157 Sum_probs=41.2
Q ss_pred hhCCCCEEEEeCCcchhhhcccccccceEEEEEeCCCCCCCCcCCCCCCCceeEEEEecCCCCCchhHhHHHH---HHHH
Q 030407 70 NLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVM---ERDA 146 (178)
Q Consensus 70 ~~~~~d~iiiEttG~~~~~~~~~~~ad~~I~VvD~~~~~~~~~~~~~qi~~adiiviNK~Dl~~~~~~~~~~~---~~~l 146 (178)
...+-|+|=||..|-.....|......---+.+|....... ....+.++.||++|=|= .+ ..++++ .+.+
T Consensus 27 AdlGAeVIKVE~p~g~~~r~f~~~NR~Krsi~lDLk~~~gr-~~l~~Lv~~ADV~venf----rP--G~~~rlGl~ye~L 99 (360)
T 2yim_A 27 GDLGADVVRIDRPSSVDGISRDAMLRNRRIVTADLKSDQGL-ELALKLIAKADVLIEGY----RP--GVTERLGLGPEEC 99 (360)
T ss_dssp HHTTCEEEEEECCC----CCCCGGGCSCEEEECCTTSHHHH-HHHHHHHTTCSEEEECS----CT--THHHHHTCSHHHH
T ss_pred HHcCCcEEEEeCCCCCcchhhHHhCCCCeEEEEeCCCHHHH-HHHHHHHhhCCEEEEcC----Cc--chHhhcCCCHHHH
Confidence 46689999999886111111211112334444554332111 01223467899999883 22 233332 3567
Q ss_pred HhcCCCCCEEEEe
Q 030407 147 LRMRDGGPFIFAQ 159 (178)
Q Consensus 147 ~~~np~a~i~~~S 159 (178)
+++||. ++.+|
T Consensus 100 ~~~nP~--LIy~s 110 (360)
T 2yim_A 100 AKVNDR--LIYAR 110 (360)
T ss_dssp HHHCTT--CEEEE
T ss_pred HHhCCC--eEEEE
Confidence 788994 45554
No 264
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=21.01 E-value=50 Score=24.19 Aligned_cols=69 Identities=13% Similarity=0.077 Sum_probs=36.8
Q ss_pred CCCEEEEeCCcchhhhc--ccccccceEEEEEeCCCCCCC--------CcCCCCCCCceeEEEEecCCCCCchhHhHHHH
Q 030407 73 KADLLLCESGGDNLAAN--FSRELADYIIYIIDVSGGDKI--------PRKGGPGITQADLLVINKTDLASAIGADLAVM 142 (178)
Q Consensus 73 ~~d~iiiEttG~~~~~~--~~~~~ad~~I~VvD~~~~~~~--------~~~~~~qi~~adiiviNK~Dl~~~~~~~~~~~ 142 (178)
.||+|||++.+. +... .....+|.+++++.+....-. ....... ..--.+|+||.+.... ...+.+
T Consensus 118 ~yD~viiD~p~~-~~~~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~N~~~~~~~--~~~~~~ 193 (245)
T 3ea0_A 118 FYDYIIVDFGAS-IDHVGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKP-ISRIEIILNRADTNSR--ITSDEI 193 (245)
T ss_dssp HCSEEEEEEESS-CCTTHHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSC-CSCEEEEEESTTSCTT--SCHHHH
T ss_pred hCCEEEEeCCCC-CchHHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCC-ccceEEEEecCCCCCC--CCHHHH
Confidence 799999999882 2111 111246889999887532100 0001100 1124689999996544 333444
Q ss_pred HHH
Q 030407 143 ERD 145 (178)
Q Consensus 143 ~~~ 145 (178)
.+.
T Consensus 194 ~~~ 196 (245)
T 3ea0_A 194 EKV 196 (245)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 265
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=20.57 E-value=1.1e+02 Score=23.30 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=21.8
Q ss_pred CCCCEEEEeCCcchhh-hc--ccccccceEEEEEeCC
Q 030407 72 FKADLLLCESGGDNLA-AN--FSRELADYIIYIIDVS 105 (178)
Q Consensus 72 ~~~d~iiiEttG~~~~-~~--~~~~~ad~~I~VvD~~ 105 (178)
..||+|||+|.+. +. .. .....+|.+++++.+.
T Consensus 155 ~~yD~ViiD~p~~-~~~~~~~~~l~~aD~viiv~~~~ 190 (307)
T 3end_A 155 DDTDVVIFDVLGD-VVCGGFAAPLQHADQAVVVTAND 190 (307)
T ss_dssp SSCSEEEEEECCS-SCCGGGGGGGGTCSEEEEEECSS
T ss_pred ccCCEEEEeCCCc-cchHHHHHHHHHCCEEEEEecCc
Confidence 4799999999772 21 11 1112468899999864
Done!