BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030408
         (178 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q1XDU9|CHLN_PORYE Light-independent protochlorophyllide reductase subunit N
           OS=Porphyra yezoensis GN=chlN PE=3 SV=1
          Length = 441

 Score = 33.9 bits (76), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 29/139 (20%)

Query: 25  LFLYSSLLSPPTAKTLSFHSTPCNLFLGKWVLQHPSTHKPLYNE------TCPF-QRNAW 77
           L L+ SL   P    L+       +F+  W+     T  P+  E        PF  R A 
Sbjct: 179 LVLFGSL-PDPVVTQLTMELKKQGIFVSGWLPSKRYTELPVIKEGYYVAGVNPFLSRTAT 237

Query: 78  NCLRNQRPNMVLI-------NSYKWVPEACDLPQIDPV--------------KFLSLMRN 116
             +R ++  ++          +  W+ + C +  + P+               ++SL+R 
Sbjct: 238 TLMRRRKTKLIGAPFPIGPDGTRAWIEKICSVMNVKPIGLEDREKAIWASLEDYISLIRG 297

Query: 117 KNIGFVGDSLNENFIVSFL 135
           K++ F+GD+L E  +  FL
Sbjct: 298 KSVFFMGDNLLEVSLARFL 316


>sp|C5BQ30|CARA_TERTT Carbamoyl-phosphate synthase small chain OS=Teredinibacter turnerae
           (strain ATCC 39867 / T7901) GN=carA PE=3 SV=1
          Length = 386

 Score = 32.7 bits (73), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 41/100 (41%), Gaps = 19/100 (19%)

Query: 71  PFQRNAWNCLRNQRPNMVLINSYKWVPEACDLPQIDPVKFLSLMRNKNIGFVGDSLNENF 130
           P Q  A + L    P+ V +++    PE CD   ID +K L              LNEN 
Sbjct: 224 PAQTPAADVLA-MNPDGVFLSNGPGDPEPCDYA-IDAIKVL--------------LNENM 267

Query: 131 IVSFLCV---LRAADSGAKKWKRKGAWRGGYFPKYNVTVA 167
            +  +C+   L A  SGAK  K K    GG  P  NV   
Sbjct: 268 PIFGICLGHQLLALASGAKTIKMKFGHHGGNHPVQNVKTG 307


>sp|Q9ZJL3|LON_HELPJ Lon protease OS=Helicobacter pylori (strain J99) GN=lon PE=3 SV=1
          Length = 831

 Score = 30.4 bits (67), Expect = 7.2,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 89  LINSYKWVPEACDLPQIDPVKFLSLMRNKNIGFVGDSLNENFIVSFLCV 137
           ++N   W P   D+ +I+ VK       K  G +GD + E+ I++F  V
Sbjct: 637 IVNGLAWTPVGGDVLKIEAVKIRGKGELKLTGSLGDVMKESAIIAFSVV 685


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.138    0.454 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,894,432
Number of Sequences: 539616
Number of extensions: 2681074
Number of successful extensions: 6758
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6756
Number of HSP's gapped (non-prelim): 5
length of query: 178
length of database: 191,569,459
effective HSP length: 110
effective length of query: 68
effective length of database: 132,211,699
effective search space: 8990395532
effective search space used: 8990395532
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)