Query 030408
Match_columns 178
No_of_seqs 140 out of 678
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 13:17:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030408.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030408hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02629 powdery mildew resist 100.0 2.6E-54 5.6E-59 388.2 13.9 133 41-177 47-182 (387)
2 PF14416 PMR5N: PMR5 N termina 99.9 1.5E-26 3.2E-31 157.7 4.6 54 44-101 1-55 (55)
3 PF13839 PC-Esterase: GDSL/SGN 99.7 1.1E-17 2.3E-22 137.7 7.4 75 102-176 1-81 (263)
4 cd01842 SGNH_hydrolase_like_5 88.7 0.34 7.4E-06 40.6 2.5 23 119-141 2-24 (183)
5 COG2845 Uncharacterized protei 85.7 0.88 1.9E-05 41.5 3.5 30 111-140 111-140 (354)
6 cd01829 SGNH_hydrolase_peri2 S 84.8 0.83 1.8E-05 36.0 2.7 22 118-139 1-22 (200)
7 cd01834 SGNH_hydrolase_like_2 84.4 0.51 1.1E-05 36.3 1.3 15 116-130 1-15 (191)
8 cd01841 NnaC_like NnaC (CMP-Ne 82.7 0.63 1.4E-05 35.9 1.2 17 117-133 1-17 (174)
9 cd01825 SGNH_hydrolase_peri1 S 72.7 1.6 3.5E-05 33.7 0.8 18 118-135 1-19 (189)
10 cd01844 SGNH_hydrolase_like_6 70.9 2 4.3E-05 33.6 1.0 13 118-130 1-13 (177)
11 cd01838 Isoamyl_acetate_hydrol 70.9 1.9 4.1E-05 33.4 0.8 13 118-130 1-13 (199)
12 cd01835 SGNH_hydrolase_like_3 69.5 2.1 4.5E-05 33.6 0.8 13 117-129 2-14 (193)
13 cd01832 SGNH_hydrolase_like_1 67.7 2.3 5E-05 32.9 0.7 11 118-128 1-11 (185)
14 PF00185 OTCace: Aspartate/orn 67.1 4.4 9.6E-05 32.2 2.2 25 115-140 1-25 (158)
15 cd01820 PAF_acetylesterase_lik 67.0 4.4 9.6E-05 32.7 2.3 15 116-130 32-46 (214)
16 PRK10528 multifunctional acyl- 63.0 4 8.8E-05 32.7 1.3 15 116-130 10-24 (191)
17 cd01827 sialate_O-acetylestera 62.5 3.9 8.4E-05 31.8 1.1 13 118-130 2-14 (188)
18 cd01822 Lysophospholipase_L1_l 61.8 4 8.6E-05 31.2 1.0 12 118-129 2-13 (177)
19 cd01833 XynB_like SGNH_hydrola 61.0 3.2 7E-05 31.4 0.4 12 118-129 2-13 (157)
20 cd01831 Endoglucanase_E_like E 60.8 4.4 9.6E-05 31.4 1.1 15 118-132 1-15 (169)
21 PF09949 DUF2183: Uncharacteri 60.6 7.6 0.00016 29.2 2.3 24 106-129 54-77 (100)
22 cd00229 SGNH_hydrolase SGNH_hy 58.1 3.7 8.1E-05 29.7 0.3 18 119-136 1-18 (187)
23 PF12026 DUF3513: Domain of un 57.2 0.65 1.4E-05 39.6 -4.4 17 114-130 132-148 (210)
24 cd04501 SGNH_hydrolase_like_4 55.5 5.7 0.00012 30.8 0.9 12 117-128 1-12 (183)
25 cd01836 FeeA_FeeB_like SGNH_hy 53.8 6.8 0.00015 30.6 1.1 14 117-130 3-16 (191)
26 cd01828 sialate_O-acetylestera 53.5 6.1 0.00013 30.3 0.8 15 119-133 2-16 (169)
27 cd01830 XynE_like SGNH_hydrola 52.6 7.3 0.00016 31.2 1.2 12 118-129 1-12 (204)
28 cd01839 SGNH_arylesterase_like 52.5 7.4 0.00016 31.0 1.2 13 118-130 1-13 (208)
29 PRK14805 ornithine carbamoyltr 52.3 10 0.00022 33.5 2.2 27 112-140 143-169 (302)
30 cd01821 Rhamnogalacturan_acety 51.0 7.3 0.00016 30.8 0.9 15 118-132 2-16 (198)
31 PRK04284 ornithine carbamoyltr 48.9 14 0.0003 33.2 2.4 27 113-140 152-178 (332)
32 cd04502 SGNH_hydrolase_like_7 47.4 9.3 0.0002 29.4 1.0 14 119-132 2-15 (171)
33 PRK00856 pyrB aspartate carbam 43.8 18 0.0004 32.0 2.4 28 113-140 153-180 (305)
34 PF00702 Hydrolase: haloacid d 43.2 20 0.00044 27.9 2.4 20 108-127 185-206 (215)
35 PRK02102 ornithine carbamoyltr 42.1 21 0.00046 32.2 2.5 27 113-140 152-178 (331)
36 TIGR01489 DKMTPPase-SF 2,3-dik 42.0 28 0.00062 26.6 3.0 13 116-128 162-174 (188)
37 PLN02527 aspartate carbamoyltr 41.8 21 0.00046 31.6 2.5 27 113-139 148-174 (306)
38 cd04506 SGNH_hydrolase_YpmR_li 41.0 14 0.0003 29.2 1.0 12 118-129 1-12 (204)
39 PRK01713 ornithine carbamoyltr 39.4 24 0.00052 31.7 2.5 26 114-140 154-179 (334)
40 COG0078 ArgF Ornithine carbamo 38.9 23 0.0005 32.0 2.2 21 114-136 151-171 (310)
41 cd01840 SGNH_hydrolase_yrhL_li 38.6 24 0.00051 27.0 2.0 20 119-138 2-21 (150)
42 COG0034 PurF Glutamine phospho 38.3 19 0.0004 34.3 1.6 32 110-141 342-374 (470)
43 PF01861 DUF43: Protein of unk 37.9 15 0.00033 32.0 0.9 12 114-125 43-54 (243)
44 PLN02342 ornithine carbamoyltr 36.4 29 0.00063 31.6 2.5 26 113-140 191-216 (348)
45 PRK08192 aspartate carbamoyltr 35.7 28 0.00062 31.3 2.3 26 114-139 157-182 (338)
46 COG0540 PyrB Aspartate carbamo 34.1 13 0.00028 33.7 -0.1 45 96-140 138-182 (316)
47 TIGR00670 asp_carb_tr aspartat 33.6 26 0.00056 31.0 1.7 29 112-140 146-174 (301)
48 PRK12562 ornithine carbamoyltr 33.6 34 0.00074 30.9 2.5 26 114-140 154-179 (334)
49 PRK11891 aspartate carbamoyltr 31.7 38 0.00082 31.8 2.5 26 114-139 239-264 (429)
50 PF13086 AAA_11: AAA domain; P 30.4 46 0.001 25.9 2.5 16 110-125 210-226 (236)
51 PF04954 SIP: Siderophore-inte 29.9 1.1E+02 0.0023 22.9 4.4 23 117-139 2-24 (119)
52 PRK03515 ornithine carbamoyltr 29.7 43 0.00094 30.2 2.5 26 114-140 154-179 (336)
53 PF00657 Lipase_GDSL: GDSL-lik 29.5 28 0.0006 27.1 1.1 11 119-129 1-11 (234)
54 PF13242 Hydrolase_like: HAD-h 29.2 56 0.0012 22.1 2.5 21 115-135 20-40 (75)
55 PRK00779 ornithine carbamoyltr 28.5 41 0.0009 29.7 2.1 43 96-140 132-174 (304)
56 PRK14804 ornithine carbamoyltr 28.3 46 0.00099 29.6 2.4 26 113-140 150-175 (311)
57 cd01823 SEST_like SEST_like. A 26.9 32 0.0007 28.2 1.1 13 117-129 1-13 (259)
58 TIGR00658 orni_carb_tr ornithi 26.4 53 0.0011 29.0 2.4 25 114-140 146-170 (304)
59 TIGR03333 salvage_mtnX 2-hydro 25.3 55 0.0012 26.5 2.2 14 115-128 155-168 (214)
60 KOG0572 Glutamine phosphoribos 25.1 36 0.00078 32.2 1.1 30 112-141 352-382 (474)
61 PF12710 HAD: haloacid dehalog 24.9 50 0.0011 25.3 1.8 13 115-127 174-186 (192)
62 PF14647 FAM91_N: FAM91 N-term 24.8 81 0.0018 28.6 3.3 31 101-141 108-138 (308)
63 PF03193 DUF258: Protein of un 24.6 64 0.0014 26.2 2.4 35 105-141 24-58 (161)
64 PF13289 SIR2_2: SIR2-like dom 23.8 1.6E+02 0.0034 21.6 4.3 33 108-140 78-110 (143)
65 PLN02954 phosphoserine phospha 23.8 67 0.0015 25.7 2.4 14 116-129 169-182 (224)
66 CHL00073 chlN photochlorophyll 23.4 99 0.0022 29.2 3.7 27 110-139 308-334 (457)
67 PRK02255 putrescine carbamoylt 23.4 69 0.0015 28.9 2.6 24 114-139 152-175 (338)
68 PF13419 HAD_2: Haloacid dehal 23.1 81 0.0017 23.1 2.6 16 115-131 149-164 (176)
69 PRK10113 cell division modulat 22.3 44 0.00095 24.2 0.9 17 113-129 38-56 (80)
70 PRK13814 pyrB aspartate carbam 21.9 53 0.0011 29.3 1.6 27 113-139 154-180 (310)
71 PF09084 NMT1: NMT1/THI5 like; 21.6 69 0.0015 25.2 2.1 26 111-136 88-113 (216)
72 PHA02597 30.2 hypothetical pro 20.5 73 0.0016 25.0 2.0 23 106-128 132-157 (197)
73 COG5275 BRCT domain type II [G 20.1 73 0.0016 28.0 2.0 30 111-140 154-185 (276)
74 PRK13376 pyrB bifunctional asp 20.1 79 0.0017 30.5 2.4 26 114-139 172-197 (525)
No 1
>PLN02629 powdery mildew resistance 5
Probab=100.00 E-value=2.6e-54 Score=388.22 Aligned_cols=133 Identities=30% Similarity=0.671 Sum_probs=121.8
Q ss_pred CCCCCCCccccCceeecCCCCCCCCCC-CCCc-CcccccccccCCCCCcccceeeeeeCCCCCCCCCChHHHHHHhcCCc
Q 030408 41 SFHSTPCNLFLGKWVLQHPSTHKPLYN-ETCP-FQRNAWNCLRNQRPNMVLINSYKWVPEACDLPQIDPVKFLSLMRNKN 118 (178)
Q Consensus 41 ~~~~~~Cd~~~G~WV~d~~~~~~P~Y~-~tCp-~i~~~~~C~~nGRpD~~~~~~wrWqP~gC~lp~fd~~~fl~~lrgk~ 118 (178)
..+.++||+|+|+||+| .++|+|+ .+|| ||+++|||++|||||++|+ +|||||+||+|||||+.+||+.|||||
T Consensus 47 ~~~~~~CD~f~G~WV~D---~s~PlY~~~~Cp~fi~~~~nC~knGRPD~~Yl-~WRWqP~gC~LPRFda~~fLe~~RgKr 122 (387)
T PLN02629 47 QANQSTCALFVGTWVRD---DSYPLYQSSDCPGVIDPEFNCQMYGRPDSDYL-KYRWQPLNCELPRFNGLEFLLKMKGKT 122 (387)
T ss_pred CCCccccCCCCCeEecC---CCCCCCCCCCCccccccccchhhcCCCCcchh-hccccCCCCCCCCcCHHHHHHHhcCCe
Confidence 35678899999999999 4789998 5999 9999999999999999999 699999999999999999999999999
Q ss_pred EEEEecchhhHHHHHHHHhhhhcccCCc-eeeecCceeeEEEeeccEEEEEEecccceec
Q 030408 119 IGFVGDSLNENFIVSFLCVLRAADSGAK-KWKRKGAWRGGYFPKYNVTVAYHRAVLLANY 177 (178)
Q Consensus 119 i~FVGDSl~Rn~~~SL~clL~~~~~~~~-~~~~~~~~~~~~f~~yn~tv~f~WsPfLv~~ 177 (178)
||||||||+||||+||+|||++++|... .+.+++..+.|+|++||+||+||||||||+.
T Consensus 123 l~FVGDSL~RNQ~eSLvClL~~~~p~~~~~~~~~~~~~~~~F~~yN~TV~~ywspfLV~~ 182 (387)
T PLN02629 123 VMFVGDSLGRNQWESLICLISSSVPSTRTQMSRGDPLSTFKFLDYGVSISFYKAPYLVDI 182 (387)
T ss_pred EEEeccccchhHHHHHHHHhhccCCCCceeeecCCceEEEEeccCCEEEEEEecceEEee
Confidence 9999999999999999999999887543 3445566788999999999999999999985
No 2
>PF14416 PMR5N: PMR5 N terminal Domain
Probab=99.93 E-value=1.5e-26 Score=157.73 Aligned_cols=54 Identities=39% Similarity=1.032 Sum_probs=49.7
Q ss_pred CCCCccccCceeecCCCCCCCCCC-CCCcCcccccccccCCCCCcccceeeeeeCCCCC
Q 030408 44 STPCNLFLGKWVLQHPSTHKPLYN-ETCPFQRNAWNCLRNQRPNMVLINSYKWVPEACD 101 (178)
Q Consensus 44 ~~~Cd~~~G~WV~d~~~~~~P~Y~-~tCp~i~~~~~C~~nGRpD~~~~~~wrWqP~gC~ 101 (178)
+++||+|+|+||+| .++|+|+ ++||||+++|||++|||||++|+ +|||||++|+
T Consensus 1 e~~Cd~~~G~WV~D---~~~PlY~~~~Cp~i~~~~nC~~nGRpD~~y~-~wRWqP~~Cd 55 (55)
T PF14416_consen 1 EKRCDYFDGRWVPD---PSYPLYTNSTCPFIDEGFNCQKNGRPDSDYL-KWRWQPRGCD 55 (55)
T ss_pred CCccCcccCEEEeC---CCCCccCCCCCCcCCCccchhhcCCCCCccc-eeeecCCCCC
Confidence 36799999999999 4679996 69999999999999999999998 5999999996
No 3
>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Probab=99.72 E-value=1.1e-17 Score=137.67 Aligned_cols=75 Identities=29% Similarity=0.403 Sum_probs=61.8
Q ss_pred CCCCChHHHHHHhcCCcEEEEecchhhHHHHHHHHhhhhccc-----CCce-eeecCceeeEEEeeccEEEEEEecccce
Q 030408 102 LPQIDPVKFLSLMRNKNIGFVGDSLNENFIVSFLCVLRAADS-----GAKK-WKRKGAWRGGYFPKYNVTVAYHRAVLLA 175 (178)
Q Consensus 102 lp~fd~~~fl~~lrgk~i~FVGDSl~Rn~~~SL~clL~~~~~-----~~~~-~~~~~~~~~~~f~~yn~tv~f~WsPfLv 175 (178)
+++||+.++|++||||+|+|||||++||+|+||+|+|.+..+ .... ....+....+.+.++|+||+|+|+|||+
T Consensus 1 ~~~~d~~~cL~~lr~k~i~fiGDS~~Rq~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~p~l~ 80 (263)
T PF13839_consen 1 LPRFDARECLQRLRNKRIVFIGDSTTRQQYESLVCLLGPEVPSWQESPHSGIEFPNHRNFRYNFPDYNVTLSFYWDPFLV 80 (263)
T ss_pred CChhhHHHHHHHccCCEEEEEechhhHHHHHHHHHHHhccccccccccccccccccCCceEEeecCCCeEEEEecccccc
Confidence 578999999999999999999999999999999999998665 2111 1112334567889999999999999998
Q ss_pred e
Q 030408 176 N 176 (178)
Q Consensus 176 ~ 176 (178)
+
T Consensus 81 ~ 81 (263)
T PF13839_consen 81 D 81 (263)
T ss_pred c
Confidence 4
No 4
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=88.71 E-value=0.34 Score=40.56 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=21.4
Q ss_pred EEEEecchhhHHHHHHHHhhhhc
Q 030408 119 IGFVGDSLNENFIVSFLCVLRAA 141 (178)
Q Consensus 119 i~FVGDSl~Rn~~~SL~clL~~~ 141 (178)
++|+|||+.|.+|--|+|+|...
T Consensus 2 v~~lgds~~ravykdlv~l~q~~ 24 (183)
T cd01842 2 VVILGDSIQRAVYKDLVLLLQKD 24 (183)
T ss_pred EEEEccHHHHHHHHHHHHHhcCC
Confidence 78999999999999999999854
No 5
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.72 E-value=0.88 Score=41.46 Aligned_cols=30 Identities=20% Similarity=0.162 Sum_probs=24.8
Q ss_pred HHHhcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 111 LSLMRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 111 l~~lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
.+.=.+++|.|||||+++.+-..|...|..
T Consensus 111 ~k~~~a~kvLvvGDslm~gla~gl~~al~t 140 (354)
T COG2845 111 AKSRDADKVLVVGDSLMQGLAEGLDKALAT 140 (354)
T ss_pred hhCCCCCEEEEechHHhhhhHHHHHHHhcc
Confidence 344458999999999999999998887764
No 6
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=84.77 E-value=0.83 Score=35.95 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=18.2
Q ss_pred cEEEEecchhhHHHHHHHHhhh
Q 030408 118 NIGFVGDSLNENFIVSFLCVLR 139 (178)
Q Consensus 118 ~i~FVGDSl~Rn~~~SL~clL~ 139 (178)
||+|+|||++.+...++...+.
T Consensus 1 ril~iGDS~~~g~~~~l~~~~~ 22 (200)
T cd01829 1 RVLVIGDSLAQGLAPGLLRALA 22 (200)
T ss_pred CEEEEechHHHHHHHHHHHHhc
Confidence 6899999999998877775554
No 7
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=84.39 E-value=0.51 Score=36.31 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=13.9
Q ss_pred CCcEEEEecchhhHH
Q 030408 116 NKNIGFVGDSLNENF 130 (178)
Q Consensus 116 gk~i~FVGDSl~Rn~ 130 (178)
|++|+++|||++.+.
T Consensus 1 ~~~v~~~GDSit~g~ 15 (191)
T cd01834 1 GDRIVFIGNSITDRG 15 (191)
T ss_pred CCEEEEeCCChhhcc
Confidence 799999999999976
No 8
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=82.73 E-value=0.63 Score=35.93 Aligned_cols=17 Identities=53% Similarity=0.728 Sum_probs=13.5
Q ss_pred CcEEEEecchhhHHHHH
Q 030408 117 KNIGFVGDSLNENFIVS 133 (178)
Q Consensus 117 k~i~FVGDSl~Rn~~~S 133 (178)
|+|+|+|||++.+.-..
T Consensus 1 ~~iv~~GdS~t~~~~~~ 17 (174)
T cd01841 1 KNIVFIGDSLFEGWPLY 17 (174)
T ss_pred CCEEEEcchhhhcCchh
Confidence 68999999999865433
No 9
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=72.71 E-value=1.6 Score=33.71 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=13.1
Q ss_pred cEEEEecchhhH-HHHHHH
Q 030408 118 NIGFVGDSLNEN-FIVSFL 135 (178)
Q Consensus 118 ~i~FVGDSl~Rn-~~~SL~ 135 (178)
||+|+|||++-. .|-+.+
T Consensus 1 ~iv~~GDS~t~g~~~~~~l 19 (189)
T cd01825 1 RIAQLGDSHIAGDFFTDVL 19 (189)
T ss_pred CeeEecCccccccchhhHH
Confidence 799999999963 344443
No 10
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=70.93 E-value=2 Score=33.58 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=11.4
Q ss_pred cEEEEecchhhHH
Q 030408 118 NIGFVGDSLNENF 130 (178)
Q Consensus 118 ~i~FVGDSl~Rn~ 130 (178)
||+|+|||++.+.
T Consensus 1 ~iv~~GDSit~G~ 13 (177)
T cd01844 1 PWVFYGTSISQGA 13 (177)
T ss_pred CEEEEeCchhcCc
Confidence 6999999998865
No 11
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=70.92 E-value=1.9 Score=33.36 Aligned_cols=13 Identities=31% Similarity=0.417 Sum_probs=11.4
Q ss_pred cEEEEecchhhHH
Q 030408 118 NIGFVGDSLNENF 130 (178)
Q Consensus 118 ~i~FVGDSl~Rn~ 130 (178)
||+|+|||++.+.
T Consensus 1 ~i~~~GDSit~g~ 13 (199)
T cd01838 1 KIVLFGDSITQFS 13 (199)
T ss_pred CEEEecCcccccc
Confidence 6999999999864
No 12
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=69.47 E-value=2.1 Score=33.64 Aligned_cols=13 Identities=46% Similarity=0.470 Sum_probs=11.7
Q ss_pred CcEEEEecchhhH
Q 030408 117 KNIGFVGDSLNEN 129 (178)
Q Consensus 117 k~i~FVGDSl~Rn 129 (178)
++|+|+|||++..
T Consensus 2 ~~i~~lGDSit~G 14 (193)
T cd01835 2 KRLIVVGDSLVYG 14 (193)
T ss_pred cEEEEEcCccccC
Confidence 6899999999975
No 13
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=67.72 E-value=2.3 Score=32.92 Aligned_cols=11 Identities=36% Similarity=0.492 Sum_probs=10.0
Q ss_pred cEEEEecchhh
Q 030408 118 NIGFVGDSLNE 128 (178)
Q Consensus 118 ~i~FVGDSl~R 128 (178)
||+|+|||++.
T Consensus 1 ~i~~~GDSit~ 11 (185)
T cd01832 1 RYVALGDSITE 11 (185)
T ss_pred CeeEecchhhc
Confidence 69999999996
No 14
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=67.07 E-value=4.4 Score=32.21 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=21.1
Q ss_pred cCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 115 RNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 115 rgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
.|++|+|||| ..-|...|++.++..
T Consensus 1 ~gl~i~~vGD-~~~rv~~Sl~~~~~~ 25 (158)
T PF00185_consen 1 KGLKIAYVGD-GHNRVAHSLIELLAK 25 (158)
T ss_dssp TTEEEEEESS-TTSHHHHHHHHHHHH
T ss_pred CCCEEEEECC-CCChHHHHHHHHHHH
Confidence 4899999999 667888999988774
No 15
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=67.04 E-value=4.4 Score=32.74 Aligned_cols=15 Identities=33% Similarity=0.851 Sum_probs=12.9
Q ss_pred CCcEEEEecchhhHH
Q 030408 116 NKNIGFVGDSLNENF 130 (178)
Q Consensus 116 gk~i~FVGDSl~Rn~ 130 (178)
..+|+|+|||++...
T Consensus 32 ~~~iv~lGDSit~g~ 46 (214)
T cd01820 32 EPDVVFIGDSITQNW 46 (214)
T ss_pred CCCEEEECchHhhhh
Confidence 458999999999974
No 16
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=63.04 E-value=4 Score=32.66 Aligned_cols=15 Identities=27% Similarity=0.574 Sum_probs=12.9
Q ss_pred CCcEEEEecchhhHH
Q 030408 116 NKNIGFVGDSLNENF 130 (178)
Q Consensus 116 gk~i~FVGDSl~Rn~ 130 (178)
+.+|+|+|||++.+.
T Consensus 10 ~~~iv~~GDSit~G~ 24 (191)
T PRK10528 10 ADTLLILGDSLSAGY 24 (191)
T ss_pred CCEEEEEeCchhhcC
Confidence 679999999999763
No 17
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=62.52 E-value=3.9 Score=31.78 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=10.7
Q ss_pred cEEEEecchhhHH
Q 030408 118 NIGFVGDSLNENF 130 (178)
Q Consensus 118 ~i~FVGDSl~Rn~ 130 (178)
||+|+|||++...
T Consensus 2 ~i~~~GDSit~G~ 14 (188)
T cd01827 2 KVACVGNSITEGA 14 (188)
T ss_pred eEEEEeccccccc
Confidence 7999999996653
No 18
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=61.76 E-value=4 Score=31.16 Aligned_cols=12 Identities=42% Similarity=0.501 Sum_probs=10.4
Q ss_pred cEEEEecchhhH
Q 030408 118 NIGFVGDSLNEN 129 (178)
Q Consensus 118 ~i~FVGDSl~Rn 129 (178)
||+|+|||++-.
T Consensus 2 ~i~~~GDSit~G 13 (177)
T cd01822 2 TILALGDSLTAG 13 (177)
T ss_pred eEEEEccccccC
Confidence 799999999755
No 19
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=61.00 E-value=3.2 Score=31.36 Aligned_cols=12 Identities=33% Similarity=0.327 Sum_probs=10.1
Q ss_pred cEEEEecchhhH
Q 030408 118 NIGFVGDSLNEN 129 (178)
Q Consensus 118 ~i~FVGDSl~Rn 129 (178)
+|++||||++-.
T Consensus 2 ~~~~~Gds~~~g 13 (157)
T cd01833 2 RIMPLGDSITWG 13 (157)
T ss_pred ceeecCCceeec
Confidence 689999998765
No 20
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=60.79 E-value=4.4 Score=31.37 Aligned_cols=15 Identities=40% Similarity=0.718 Sum_probs=11.9
Q ss_pred cEEEEecchhhHHHH
Q 030408 118 NIGFVGDSLNENFIV 132 (178)
Q Consensus 118 ~i~FVGDSl~Rn~~~ 132 (178)
+|+|+|||++-..-.
T Consensus 1 ~i~~iGDSit~G~~~ 15 (169)
T cd01831 1 KIEFIGDSITCGYGV 15 (169)
T ss_pred CEEEEeccccccCcc
Confidence 589999999986443
No 21
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=60.64 E-value=7.6 Score=29.18 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=18.7
Q ss_pred ChHHHHHHhcCCcEEEEecchhhH
Q 030408 106 DPVKFLSLMRNKNIGFVGDSLNEN 129 (178)
Q Consensus 106 d~~~fl~~lrgk~i~FVGDSl~Rn 129 (178)
.-.++++.+-++++++||||--.-
T Consensus 54 ~i~~i~~~fP~~kfiLIGDsgq~D 77 (100)
T PF09949_consen 54 NIERILRDFPERKFILIGDSGQHD 77 (100)
T ss_pred HHHHHHHHCCCCcEEEEeeCCCcC
Confidence 345677778899999999996553
No 22
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=58.09 E-value=3.7 Score=29.72 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=13.4
Q ss_pred EEEEecchhhHHHHHHHH
Q 030408 119 IGFVGDSLNENFIVSFLC 136 (178)
Q Consensus 119 i~FVGDSl~Rn~~~SL~c 136 (178)
|+|+|||++.+.......
T Consensus 1 i~~~GDS~~~g~~~~~~~ 18 (187)
T cd00229 1 ILVIGDSITAGYGASSGS 18 (187)
T ss_pred CeeeccccccccCCCCCC
Confidence 689999999876554443
No 23
>PF12026 DUF3513: Domain of unknown function (DUF3513); InterPro: IPR021901 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 192 to 218 amino acids in length. This domain is found associated with PF00018 from PFAM, PF08824 from PFAM. This domain has a conserved QPP sequence motif. ; PDB: 3T6G_D 1X27_N.
Probab=57.18 E-value=0.65 Score=39.57 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=14.0
Q ss_pred hcCCcEEEEecchhhHH
Q 030408 114 MRNKNIGFVGDSLNENF 130 (178)
Q Consensus 114 lrgk~i~FVGDSl~Rn~ 130 (178)
|.|-++|||||++.|+.
T Consensus 132 l~ahkLVfiGDTl~r~~ 148 (210)
T PF12026_consen 132 LSAHKLVFIGDTLCREA 148 (210)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred EEeeeeeeeccHHHHHh
Confidence 55889999999999864
No 24
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=55.51 E-value=5.7 Score=30.78 Aligned_cols=12 Identities=25% Similarity=0.385 Sum_probs=10.4
Q ss_pred CcEEEEecchhh
Q 030408 117 KNIGFVGDSLNE 128 (178)
Q Consensus 117 k~i~FVGDSl~R 128 (178)
.||+|+|||++.
T Consensus 1 ~~i~~~GDSi~~ 12 (183)
T cd04501 1 MRVVCLGDSITY 12 (183)
T ss_pred CeEEEEcccccc
Confidence 379999999995
No 25
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=53.79 E-value=6.8 Score=30.56 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=11.9
Q ss_pred CcEEEEecchhhHH
Q 030408 117 KNIGFVGDSLNENF 130 (178)
Q Consensus 117 k~i~FVGDSl~Rn~ 130 (178)
.||+|+|||++-..
T Consensus 3 ~~i~~~GDSit~G~ 16 (191)
T cd01836 3 LRLLVLGDSTAAGV 16 (191)
T ss_pred eEEEEEeccccccc
Confidence 37999999999774
No 26
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=53.45 E-value=6.1 Score=30.29 Aligned_cols=15 Identities=40% Similarity=0.468 Sum_probs=11.8
Q ss_pred EEEEecchhhHHHHH
Q 030408 119 IGFVGDSLNENFIVS 133 (178)
Q Consensus 119 i~FVGDSl~Rn~~~S 133 (178)
|+|+|||+++..-+.
T Consensus 2 v~~~GdSi~~~~~~~ 16 (169)
T cd01828 2 LVFLGDSLTEGGPWA 16 (169)
T ss_pred EEEecchhhccCcHH
Confidence 789999999765433
No 27
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=52.61 E-value=7.3 Score=31.16 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=10.3
Q ss_pred cEEEEecchhhH
Q 030408 118 NIGFVGDSLNEN 129 (178)
Q Consensus 118 ~i~FVGDSl~Rn 129 (178)
+|+|+|||++.+
T Consensus 1 ~iv~~GDSiT~G 12 (204)
T cd01830 1 SVVALGDSITDG 12 (204)
T ss_pred CEEEEecccccC
Confidence 589999999964
No 28
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=52.51 E-value=7.4 Score=31.02 Aligned_cols=13 Identities=31% Similarity=0.194 Sum_probs=11.1
Q ss_pred cEEEEecchhhHH
Q 030408 118 NIGFVGDSLNENF 130 (178)
Q Consensus 118 ~i~FVGDSl~Rn~ 130 (178)
+|+|+|||++..-
T Consensus 1 ~I~~~GDSiT~G~ 13 (208)
T cd01839 1 TILCFGDSNTWGI 13 (208)
T ss_pred CEEEEecCcccCC
Confidence 5899999999863
No 29
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=52.26 E-value=10 Score=33.54 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=21.6
Q ss_pred HHhcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 112 SLMRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 112 ~~lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
..++|++|+||||. +|...|++.++..
T Consensus 143 g~l~g~kva~vGD~--~~v~~S~~~~~~~ 169 (302)
T PRK14805 143 GDVSKVKLAYVGDG--NNVTHSLMYGAAI 169 (302)
T ss_pred CCcCCcEEEEEcCC--CccHHHHHHHHHH
Confidence 34789999999994 5688998888764
No 30
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=51.03 E-value=7.3 Score=30.79 Aligned_cols=15 Identities=27% Similarity=0.293 Sum_probs=12.4
Q ss_pred cEEEEecchhhHHHH
Q 030408 118 NIGFVGDSLNENFIV 132 (178)
Q Consensus 118 ~i~FVGDSl~Rn~~~ 132 (178)
+|+|+|||++.+...
T Consensus 2 ~i~~~GDS~t~G~~~ 16 (198)
T cd01821 2 TIFLAGDSTVADYDP 16 (198)
T ss_pred EEEEEecCCcccCCC
Confidence 689999999987643
No 31
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=48.94 E-value=14 Score=33.24 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=21.6
Q ss_pred HhcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 113 LMRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 113 ~lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
.+.|++|+||||..+ |...|++.++..
T Consensus 152 ~l~g~kia~vGD~~~-~v~~Sl~~~~~~ 178 (332)
T PRK04284 152 PYKDIKFTYVGDGRN-NVANALMQGAAI 178 (332)
T ss_pred CcCCcEEEEecCCCc-chHHHHHHHHHH
Confidence 367999999999766 488888887763
No 32
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=47.40 E-value=9.3 Score=29.36 Aligned_cols=14 Identities=29% Similarity=0.171 Sum_probs=11.2
Q ss_pred EEEEecchhhHHHH
Q 030408 119 IGFVGDSLNENFIV 132 (178)
Q Consensus 119 i~FVGDSl~Rn~~~ 132 (178)
|+|||||+.+.--.
T Consensus 2 i~~~g~s~~~~w~~ 15 (171)
T cd04502 2 ILFYGSSSIRLWDT 15 (171)
T ss_pred EEEEcCchhcchhh
Confidence 79999999886543
No 33
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=43.76 E-value=18 Score=32.03 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=22.2
Q ss_pred HhcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 113 LMRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 113 ~lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
.++|++|+||||-..-|...|++.++..
T Consensus 153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~~~ 180 (305)
T PRK00856 153 RLEGLKVAIVGDIKHSRVARSNIQALTR 180 (305)
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHH
Confidence 4789999999997655778888777663
No 34
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=43.25 E-value=20 Score=27.85 Aligned_cols=20 Identities=20% Similarity=0.579 Sum_probs=15.4
Q ss_pred HHHHHHhc--CCcEEEEecchh
Q 030408 108 VKFLSLMR--NKNIGFVGDSLN 127 (178)
Q Consensus 108 ~~fl~~lr--gk~i~FVGDSl~ 127 (178)
..+.+.|+ +.++++|||+++
T Consensus 185 ~~~i~~l~~~~~~v~~vGDg~n 206 (215)
T PF00702_consen 185 LRIIKELQVKPGEVAMVGDGVN 206 (215)
T ss_dssp HHHHHHHTCTGGGEEEEESSGG
T ss_pred HHHHHHHhcCCCEEEEEccCHH
Confidence 45667765 569999999984
No 35
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=42.12 E-value=21 Score=32.15 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=21.6
Q ss_pred HhcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 113 LMRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 113 ~lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
.++|++|++|||..+ |...|++.++..
T Consensus 152 ~l~g~~va~vGd~~~-~v~~Sl~~~~~~ 178 (331)
T PRK02102 152 PLKGLKLAYVGDGRN-NMANSLMVGGAK 178 (331)
T ss_pred CCCCCEEEEECCCcc-cHHHHHHHHHHH
Confidence 367999999999865 488888887763
No 36
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=42.01 E-value=28 Score=26.64 Aligned_cols=13 Identities=23% Similarity=0.659 Sum_probs=10.8
Q ss_pred CCcEEEEecchhh
Q 030408 116 NKNIGFVGDSLNE 128 (178)
Q Consensus 116 gk~i~FVGDSl~R 128 (178)
.++++|||||.+=
T Consensus 162 ~~~~i~iGD~~~D 174 (188)
T TIGR01489 162 YQHIIYIGDGVTD 174 (188)
T ss_pred CceEEEECCCcch
Confidence 5689999999764
No 37
>PLN02527 aspartate carbamoyltransferase
Probab=41.75 E-value=21 Score=31.60 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=20.9
Q ss_pred HhcCCcEEEEecchhhHHHHHHHHhhh
Q 030408 113 LMRNKNIGFVGDSLNENFIVSFLCVLR 139 (178)
Q Consensus 113 ~lrgk~i~FVGDSl~Rn~~~SL~clL~ 139 (178)
.++|.+|+||||-.+-+...|++-.+.
T Consensus 148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~ 174 (306)
T PLN02527 148 RLDGIKVGLVGDLANGRTVRSLAYLLA 174 (306)
T ss_pred CcCCCEEEEECCCCCChhHHHHHHHHH
Confidence 367999999999865467778777654
No 38
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=40.97 E-value=14 Score=29.21 Aligned_cols=12 Identities=50% Similarity=0.639 Sum_probs=10.7
Q ss_pred cEEEEecchhhH
Q 030408 118 NIGFVGDSLNEN 129 (178)
Q Consensus 118 ~i~FVGDSl~Rn 129 (178)
+|+|+|||++..
T Consensus 1 ~i~~~GDSit~G 12 (204)
T cd04506 1 KIVALGDSLTEG 12 (204)
T ss_pred CEeEEeccccCc
Confidence 589999999996
No 39
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=39.36 E-value=24 Score=31.69 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=20.5
Q ss_pred hcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 114 MRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 114 lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
+.|++|+||||-.+ |...|++.++..
T Consensus 154 l~gl~ia~vGD~~~-~v~~Sl~~~~~~ 179 (334)
T PRK01713 154 LSEISYVYIGDARN-NMGNSLLLIGAK 179 (334)
T ss_pred cCCcEEEEECCCcc-CHHHHHHHHHHH
Confidence 67899999999654 488888877763
No 40
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=38.93 E-value=23 Score=32.02 Aligned_cols=21 Identities=29% Similarity=0.581 Sum_probs=18.5
Q ss_pred hcCCcEEEEecchhhHHHHHHHH
Q 030408 114 MRNKNIGFVGDSLNENFIVSFLC 136 (178)
Q Consensus 114 lrgk~i~FVGDSl~Rn~~~SL~c 136 (178)
++|++++||||- -|+-.||+-
T Consensus 151 l~g~k~a~vGDg--NNv~nSl~~ 171 (310)
T COG0078 151 LKGLKLAYVGDG--NNVANSLLL 171 (310)
T ss_pred ccCcEEEEEcCc--chHHHHHHH
Confidence 689999999998 888888865
No 41
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=38.63 E-value=24 Score=26.99 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=14.1
Q ss_pred EEEEecchhhHHHHHHHHhh
Q 030408 119 IGFVGDSLNENFIVSFLCVL 138 (178)
Q Consensus 119 i~FVGDSl~Rn~~~SL~clL 138 (178)
|.|+|||++-..-..+...+
T Consensus 2 v~~~GDSv~~~~~~~~~~~~ 21 (150)
T cd01840 2 ITAIGDSVMLDSSPALQEIF 21 (150)
T ss_pred eeEEeehHHHchHHHHHHHC
Confidence 78999999987655544433
No 42
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=38.30 E-value=19 Score=34.33 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=24.5
Q ss_pred HHHHhcCCcEEEEecchhhHH-HHHHHHhhhhc
Q 030408 110 FLSLMRNKNIGFVGDSLNENF-IVSFLCVLRAA 141 (178)
Q Consensus 110 fl~~lrgk~i~FVGDSl~Rn~-~~SL~clL~~~ 141 (178)
+.+.++||||+.|=||+.|.- ...++.||+.+
T Consensus 342 vr~~v~GKrVvlVDDSIVRGTTsr~IV~mlReA 374 (470)
T COG0034 342 VREVVKGKRVVLVDDSIVRGTTSRRIVQMLREA 374 (470)
T ss_pred hHHHhCCCeEEEEccccccCccHHHHHHHHHHh
Confidence 455688999999999999863 45567777743
No 43
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=37.89 E-value=15 Score=32.03 Aligned_cols=12 Identities=42% Similarity=0.758 Sum_probs=8.8
Q ss_pred hcCCcEEEEecc
Q 030408 114 MRNKNIGFVGDS 125 (178)
Q Consensus 114 lrgk~i~FVGDS 125 (178)
|.||+|+||||=
T Consensus 43 L~gk~il~lGDD 54 (243)
T PF01861_consen 43 LEGKRILFLGDD 54 (243)
T ss_dssp STT-EEEEES-T
T ss_pred ccCCEEEEEcCC
Confidence 679999999993
No 44
>PLN02342 ornithine carbamoyltransferase
Probab=36.39 E-value=29 Score=31.55 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=21.3
Q ss_pred HhcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 113 LMRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 113 ~lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
.+.|++|++|||- .|...|++.++..
T Consensus 191 ~l~glkva~vGD~--~nva~Sli~~~~~ 216 (348)
T PLN02342 191 RLEGTKVVYVGDG--NNIVHSWLLLAAV 216 (348)
T ss_pred CcCCCEEEEECCC--chhHHHHHHHHHH
Confidence 4779999999995 3699999888763
No 45
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=35.75 E-value=28 Score=31.35 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=20.3
Q ss_pred hcCCcEEEEecchhhHHHHHHHHhhh
Q 030408 114 MRNKNIGFVGDSLNENFIVSFLCVLR 139 (178)
Q Consensus 114 lrgk~i~FVGDSl~Rn~~~SL~clL~ 139 (178)
+.|++|+||||-..-|...|++.+|.
T Consensus 157 l~g~kia~vGD~~~~rv~~Sl~~~l~ 182 (338)
T PRK08192 157 IDGMHIAMVGDLKFGRTVHSLSRLLC 182 (338)
T ss_pred cCCCEEEEECcCCCCchHHHHHHHHH
Confidence 67899999999765577788776654
No 46
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=34.11 E-value=13 Score=33.67 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=37.1
Q ss_pred eCCCCCCCCCChHHHHHHhcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 96 VPEACDLPQIDPVKFLSLMRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 96 qP~gC~lp~fd~~~fl~~lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
.|.++.|--|+-.+-...+.|++|++|||-.--.-.-|++.+|..
T Consensus 138 HPTQ~LLDl~TI~~~~G~~~gl~iaivGDlkhsRva~S~~~~L~~ 182 (316)
T COG0540 138 HPTQALLDLYTIREEFGRLDGLKIAIVGDLKHSRVAHSNIQALKR 182 (316)
T ss_pred CccHHHHHHHHHHHHhCCcCCcEEEEEccccchHHHHHHHHHHHH
Confidence 477777777777777777899999999999888888888888874
No 47
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=33.59 E-value=26 Score=31.04 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=22.2
Q ss_pred HHhcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 112 SLMRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 112 ~~lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
..++|++|+||||...-|...|++-++..
T Consensus 146 g~l~g~~va~vGD~~~~~v~~Sl~~~~a~ 174 (301)
T TIGR00670 146 GRLDGLKIALVGDLKYGRTVHSLAEALTR 174 (301)
T ss_pred CCCCCCEEEEEccCCCCcHHHHHHHHHHH
Confidence 34789999999997655777787776653
No 48
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=33.57 E-value=34 Score=30.87 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=20.6
Q ss_pred hcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 114 MRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 114 lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
++|.+|++|||..+ |...|++.++..
T Consensus 154 l~gl~va~vGD~~~-~v~~S~~~~~~~ 179 (334)
T PRK12562 154 FNEMTLVYAGDARN-NMGNSMLEAAAL 179 (334)
T ss_pred cCCcEEEEECCCCC-CHHHHHHHHHHH
Confidence 57899999999865 488888877653
No 49
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=31.66 E-value=38 Score=31.77 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=20.3
Q ss_pred hcCCcEEEEecchhhHHHHHHHHhhh
Q 030408 114 MRNKNIGFVGDSLNENFIVSFLCVLR 139 (178)
Q Consensus 114 lrgk~i~FVGDSl~Rn~~~SL~clL~ 139 (178)
++|++|+||||-..-|...|++.++.
T Consensus 239 l~G~kIa~vGD~~~~rv~~Sl~~~la 264 (429)
T PRK11891 239 VDGAHIALVGDLKYGRTVHSLVKLLA 264 (429)
T ss_pred cCCCEEEEECcCCCChHHHHHHHHHH
Confidence 56899999999865577788777654
No 50
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=30.40 E-value=46 Score=25.93 Aligned_cols=16 Identities=44% Similarity=0.698 Sum_probs=11.8
Q ss_pred HHHHhcC-CcEEEEecc
Q 030408 110 FLSLMRN-KNIGFVGDS 125 (178)
Q Consensus 110 fl~~lrg-k~i~FVGDS 125 (178)
+.-+.++ |++++|||.
T Consensus 210 l~~l~~~~~~~vlvGD~ 226 (236)
T PF13086_consen 210 LIPLSRAPKRIVLVGDP 226 (236)
T ss_dssp HHHHTTTBSEEEEEE-T
T ss_pred HHHHHHhCCEEEEECCh
Confidence 4456778 999999995
No 51
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=29.90 E-value=1.1e+02 Score=22.91 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=19.7
Q ss_pred CcEEEEecchhhHHHHHHHHhhh
Q 030408 117 KNIGFVGDSLNENFIVSFLCVLR 139 (178)
Q Consensus 117 k~i~FVGDSl~Rn~~~SL~clL~ 139 (178)
++++||||.++---..+++.-|.
T Consensus 2 ~~~ll~gDeTalPAi~~iLe~lp 24 (119)
T PF04954_consen 2 DRYLLVGDETALPAIARILEALP 24 (119)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHS-
T ss_pred ceEEEEeccccHHHHHHHHHhCC
Confidence 57899999999999999888774
No 52
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=29.66 E-value=43 Score=30.18 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=20.4
Q ss_pred hcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 114 MRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 114 lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
+.|.+|+||||-.+ |...|++-++..
T Consensus 154 l~g~~ia~vGD~~~-~v~~Sl~~~~~~ 179 (336)
T PRK03515 154 FNEMTLAYAGDARN-NMGNSLLEAAAL 179 (336)
T ss_pred cCCCEEEEeCCCcC-cHHHHHHHHHHH
Confidence 56899999999544 588888887763
No 53
>PF00657 Lipase_GDSL: GDSL-like Lipase/Acylhydrolase; InterPro: IPR001087 A variety of lipolytic enzymes with serine as part of the active site have been identified []. Members of this entry include; Aeromonas hydrophila lipase, Vibrio mimicus arylesterase, Vibrio parahaemolyticus thermolabile haemolysin, rabbit phospholipase (AdRab-B), and Brassica napus anter-specific proline-rich protein.; GO: 0016788 hydrolase activity, acting on ester bonds, 0006629 lipid metabolic process; PDB: 2WAO_A 2WAB_A 1V2G_A 1U8U_A 1JRL_A 1IVN_A 1J00_A 1DEO_A 1K7C_A 1PP4_A ....
Probab=29.49 E-value=28 Score=27.07 Aligned_cols=11 Identities=45% Similarity=0.667 Sum_probs=10.1
Q ss_pred EEEEecchhhH
Q 030408 119 IGFVGDSLNEN 129 (178)
Q Consensus 119 i~FVGDSl~Rn 129 (178)
|+++|||++-.
T Consensus 1 i~~fGDS~td~ 11 (234)
T PF00657_consen 1 IVVFGDSLTDG 11 (234)
T ss_dssp EEEEESHHHHT
T ss_pred CEEEeehhccc
Confidence 68999999998
No 54
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=29.22 E-value=56 Score=22.09 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=15.5
Q ss_pred cCCcEEEEecchhhHHHHHHH
Q 030408 115 RNKNIGFVGDSLNENFIVSFL 135 (178)
Q Consensus 115 rgk~i~FVGDSl~Rn~~~SL~ 135 (178)
.-.++++||||+..-+--+-.
T Consensus 20 ~~~~~~~VGD~~~~Di~~a~~ 40 (75)
T PF13242_consen 20 DPSRCVMVGDSLETDIEAAKA 40 (75)
T ss_dssp GGGGEEEEESSTTTHHHHHHH
T ss_pred CHHHEEEEcCCcHhHHHHHHH
Confidence 357899999997777665543
No 55
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=28.46 E-value=41 Score=29.71 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=27.3
Q ss_pred eCCCCCCCCCChHHHHHHhcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 96 VPEACDLPQIDPVKFLSLMRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 96 qP~gC~lp~fd~~~fl~~lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
.|.+..+--|+-.+-...++|.+|++||| .+ +...|++.++..
T Consensus 132 HPtQaL~Dl~Ti~e~~g~l~gl~i~~vGd-~~-~v~~Sl~~~l~~ 174 (304)
T PRK00779 132 HPCQILADLLTIYEHRGSLKGLKVAWVGD-GN-NVANSLLLAAAL 174 (304)
T ss_pred ChHHHHHHHHHHHHHhCCcCCcEEEEEeC-CC-ccHHHHHHHHHH
Confidence 34443333333333344578999999999 34 478888887763
No 56
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=28.30 E-value=46 Score=29.58 Aligned_cols=26 Identities=19% Similarity=0.443 Sum_probs=20.0
Q ss_pred HhcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 113 LMRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 113 ~lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
.++|++|++||| .-|...|++-++..
T Consensus 150 ~l~g~~va~vGd--~~rv~~Sl~~~~~~ 175 (311)
T PRK14804 150 PLNQKQLTYIGV--HNNVVNSLIGITAA 175 (311)
T ss_pred CCCCCEEEEECC--CCcHHHHHHHHHHH
Confidence 478999999999 35677787776653
No 57
>cd01823 SEST_like SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.
Probab=26.93 E-value=32 Score=28.21 Aligned_cols=13 Identities=23% Similarity=0.199 Sum_probs=10.2
Q ss_pred CcEEEEecchhhH
Q 030408 117 KNIGFVGDSLNEN 129 (178)
Q Consensus 117 k~i~FVGDSl~Rn 129 (178)
.+++++|||++-+
T Consensus 1 ~~~v~iGDS~~~G 13 (259)
T cd01823 1 VRYVALGDSYAAG 13 (259)
T ss_pred CCEEEecchhhcC
Confidence 3789999998754
No 58
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=26.35 E-value=53 Score=28.99 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=20.6
Q ss_pred hcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 114 MRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 114 lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
+.|.+|++|||. + +...|++.++..
T Consensus 146 l~g~~v~~vGd~-~-~v~~Sl~~~l~~ 170 (304)
T TIGR00658 146 LKGVKVVYVGDG-N-NVCNSLMLAGAK 170 (304)
T ss_pred CCCcEEEEEeCC-C-chHHHHHHHHHH
Confidence 678999999996 3 588898888764
No 59
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=25.29 E-value=55 Score=26.46 Aligned_cols=14 Identities=29% Similarity=0.406 Sum_probs=11.7
Q ss_pred cCCcEEEEecchhh
Q 030408 115 RNKNIGFVGDSLNE 128 (178)
Q Consensus 115 rgk~i~FVGDSl~R 128 (178)
++.++++||||.+=
T Consensus 155 ~~~~~i~iGDg~~D 168 (214)
T TIGR03333 155 PNDYHIVIGDSVTD 168 (214)
T ss_pred cCCcEEEEeCCHHH
Confidence 56789999999876
No 60
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=25.09 E-value=36 Score=32.16 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=23.8
Q ss_pred HHhcCCcEEEEecchhhHH-HHHHHHhhhhc
Q 030408 112 SLMRNKNIGFVGDSLNENF-IVSFLCVLRAA 141 (178)
Q Consensus 112 ~~lrgk~i~FVGDSl~Rn~-~~SL~clL~~~ 141 (178)
+-+.||||+.|-||+.|.- .--++.||+.+
T Consensus 352 ~~~~GKrvvlVDDSIVRGtTs~~IVkmlrea 382 (474)
T KOG0572|consen 352 QNFEGKRVVLVDDSIVRGTTSSPIVKMLREA 382 (474)
T ss_pred hhcCCceEEEEecceeccCchHHHHHHHHHc
Confidence 4466999999999999964 55678888754
No 61
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=24.94 E-value=50 Score=25.33 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=11.4
Q ss_pred cCCcEEEEecchh
Q 030408 115 RNKNIGFVGDSLN 127 (178)
Q Consensus 115 rgk~i~FVGDSl~ 127 (178)
..+++++||||.+
T Consensus 174 ~~~~~~~iGDs~~ 186 (192)
T PF12710_consen 174 DPDRVIAIGDSIN 186 (192)
T ss_dssp TCCEEEEEESSGG
T ss_pred CCCeEEEEECCHH
Confidence 4789999999986
No 62
>PF14647 FAM91_N: FAM91 N-terminus
Probab=24.77 E-value=81 Score=28.58 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=25.6
Q ss_pred CCCCCChHHHHHHhcCCcEEEEecchhhHHHHHHHHhhhhc
Q 030408 101 DLPQIDPVKFLSLMRNKNIGFVGDSLNENFIVSFLCVLRAA 141 (178)
Q Consensus 101 ~lp~fd~~~fl~~lrgk~i~FVGDSl~Rn~~~SL~clL~~~ 141 (178)
.||.|+++|.++++- ++||||-.++.-.++.
T Consensus 108 sLPNFTAaD~LRllG----------IGRNqYIdlmn~~RS~ 138 (308)
T PF14647_consen 108 SLPNFTAADCLRLLG----------IGRNQYIDLMNKCRSK 138 (308)
T ss_pred cCCCCcHHHHHHHhc----------chHHHHHHHHHHhchh
Confidence 389999999997763 6799999999876654
No 63
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=24.62 E-value=64 Score=26.18 Aligned_cols=35 Identities=17% Similarity=0.154 Sum_probs=25.3
Q ss_pred CChHHHHHHhcCCcEEEEecchhhHHHHHHHHhhhhc
Q 030408 105 IDPVKFLSLMRNKNIGFVGDSLNENFIVSFLCVLRAA 141 (178)
Q Consensus 105 fd~~~fl~~lrgk~i~FVGDSl~Rn~~~SL~clL~~~ 141 (178)
-.-.++.+.++||.++|+|-|=.-- -||+..|...
T Consensus 24 ~g~~~l~~~l~~k~~vl~G~SGvGK--SSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKGKTSVLLGQSGVGK--SSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTTSEEEEECSTTSSH--HHHHHHHHTS
T ss_pred cCHHHHHHHhcCCEEEEECCCCCCH--HHHHHHHHhh
Confidence 3457888999999999999885543 2556655543
No 64
>PF13289 SIR2_2: SIR2-like domain
Probab=23.83 E-value=1.6e+02 Score=21.58 Aligned_cols=33 Identities=30% Similarity=0.322 Sum_probs=23.9
Q ss_pred HHHHHHhcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 108 VKFLSLMRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 108 ~~fl~~lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
..+.+.++.+.++|||=|+.-..+..++.-+..
T Consensus 78 ~~l~~~l~~~~~lfiGys~~D~~i~~~l~~~~~ 110 (143)
T PF13289_consen 78 NFLRSLLRSKTLLFIGYSFNDPDIRQLLRSALE 110 (143)
T ss_pred HHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHH
Confidence 345577889999999988876666666654443
No 65
>PLN02954 phosphoserine phosphatase
Probab=23.82 E-value=67 Score=25.68 Aligned_cols=14 Identities=21% Similarity=0.404 Sum_probs=11.1
Q ss_pred CCcEEEEecchhhH
Q 030408 116 NKNIGFVGDSLNEN 129 (178)
Q Consensus 116 gk~i~FVGDSl~Rn 129 (178)
-+++++||||.+=-
T Consensus 169 ~~~~i~iGDs~~Di 182 (224)
T PLN02954 169 YKTMVMIGDGATDL 182 (224)
T ss_pred CCceEEEeCCHHHH
Confidence 36899999998743
No 66
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=23.43 E-value=99 Score=29.23 Aligned_cols=27 Identities=37% Similarity=0.642 Sum_probs=17.7
Q ss_pred HHHHhcCCcEEEEecchhhHHHHHHHHhhh
Q 030408 110 FLSLMRNKNIGFVGDSLNENFIVSFLCVLR 139 (178)
Q Consensus 110 fl~~lrgk~i~FVGDSl~Rn~~~SL~clL~ 139 (178)
..+.++|||++++||+- +-.+|+..|.
T Consensus 308 ~~~~L~GKrvai~Gdp~---~~i~LarfL~ 334 (457)
T CHL00073 308 YLDLVRGKSVFFMGDNL---LEISLARFLI 334 (457)
T ss_pred HHHHHCCCEEEEECCCc---HHHHHHHHHH
Confidence 44558899999999953 3344444444
No 67
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=23.39 E-value=69 Score=28.88 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=19.9
Q ss_pred hcCCcEEEEecchhhHHHHHHHHhhh
Q 030408 114 MRNKNIGFVGDSLNENFIVSFLCVLR 139 (178)
Q Consensus 114 lrgk~i~FVGDSl~Rn~~~SL~clL~ 139 (178)
+.|++|++|||- + |...|++.++.
T Consensus 152 l~glkv~~vGD~-~-~v~~Sl~~~~~ 175 (338)
T PRK02255 152 LEDCKVVFVGDA-T-QVCVSLMFIAT 175 (338)
T ss_pred CCCCEEEEECCC-c-hHHHHHHHHHH
Confidence 678999999995 3 68889888776
No 68
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=23.13 E-value=81 Score=23.14 Aligned_cols=16 Identities=38% Similarity=0.445 Sum_probs=12.5
Q ss_pred cCCcEEEEecchhhHHH
Q 030408 115 RNKNIGFVGDSLNENFI 131 (178)
Q Consensus 115 rgk~i~FVGDSl~Rn~~ 131 (178)
..+.++||||+. .+.-
T Consensus 149 ~p~~~~~vgD~~-~d~~ 164 (176)
T PF13419_consen 149 PPEEILFVGDSP-SDVE 164 (176)
T ss_dssp SGGGEEEEESSH-HHHH
T ss_pred CcceEEEEeCCH-HHHH
Confidence 467899999998 5543
No 69
>PRK10113 cell division modulator; Provisional
Probab=22.35 E-value=44 Score=24.18 Aligned_cols=17 Identities=35% Similarity=0.751 Sum_probs=12.6
Q ss_pred HhcCCcEEEE--ecchhhH
Q 030408 113 LMRNKNIGFV--GDSLNEN 129 (178)
Q Consensus 113 ~lrgk~i~FV--GDSl~Rn 129 (178)
.||||-++|| |||.-|.
T Consensus 38 ~LrGKYVAFvl~ge~FrRS 56 (80)
T PRK10113 38 MLRGKYVAFVLMGESFLRS 56 (80)
T ss_pred eeccceEEEEEechhhccC
Confidence 5899999987 6665543
No 70
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=21.95 E-value=53 Score=29.27 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=20.3
Q ss_pred HhcCCcEEEEecchhhHHHHHHHHhhh
Q 030408 113 LMRNKNIGFVGDSLNENFIVSFLCVLR 139 (178)
Q Consensus 113 ~lrgk~i~FVGDSl~Rn~~~SL~clL~ 139 (178)
.+.|.+|++|||-..-|...|++-++.
T Consensus 154 ~l~g~~va~vGD~~~~rv~~Sl~~~~a 180 (310)
T PRK13814 154 HWNKLCVTIIGDIRHSRVANSLMDGLV 180 (310)
T ss_pred CcCCcEEEEECCCCCCcHHHHHHHHHH
Confidence 467999999999764466777766655
No 71
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine [, , ]. They are regulated by thiamine []. ; PDB: 2X26_A 3E4R_A 3KSJ_A 3KSX_A 3UIF_A 4DDD_A 1US4_A 1US5_A 3IX1_B 2X7P_A ....
Probab=21.61 E-value=69 Score=25.17 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=20.3
Q ss_pred HHHhcCCcEEEEecchhhHHHHHHHH
Q 030408 111 LSLMRNKNIGFVGDSLNENFIVSFLC 136 (178)
Q Consensus 111 l~~lrgk~i~FVGDSl~Rn~~~SL~c 136 (178)
.+-|+||+|++.+.|.+...+..++.
T Consensus 88 ~~DLkGK~i~v~~~s~~~~~~~~~l~ 113 (216)
T PF09084_consen 88 PADLKGKKIGVSRGSSSEYFLRALLK 113 (216)
T ss_dssp GGGGTTSEEEESTTSHHHHHHHHHHH
T ss_pred HHHhCCCEEEEecCcchhHHHHHHHH
Confidence 34579999999998887777776654
No 72
>PHA02597 30.2 hypothetical protein; Provisional
Probab=20.54 E-value=73 Score=25.04 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=15.7
Q ss_pred ChHHHHHHhcC---CcEEEEecchhh
Q 030408 106 DPVKFLSLMRN---KNIGFVGDSLNE 128 (178)
Q Consensus 106 d~~~fl~~lrg---k~i~FVGDSl~R 128 (178)
+|.-++.+++. ..++|||||..=
T Consensus 132 kp~~~~~a~~~~~~~~~v~vgDs~~d 157 (197)
T PHA02597 132 KEKLFIKAKEKYGDRVVCFVDDLAHN 157 (197)
T ss_pred cHHHHHHHHHHhCCCcEEEeCCCHHH
Confidence 36666666553 348899999765
No 73
>COG5275 BRCT domain type II [General function prediction only]
Probab=20.13 E-value=73 Score=28.00 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=25.9
Q ss_pred HHHhcCCcEEEEecc--hhhHHHHHHHHhhhh
Q 030408 111 LSLMRNKNIGFVGDS--LNENFIVSFLCVLRA 140 (178)
Q Consensus 111 l~~lrgk~i~FVGDS--l~Rn~~~SL~clL~~ 140 (178)
.+||.|+.++|-||- |.|+--..|+..+-.
T Consensus 154 ~~cL~G~~fVfTG~l~TlsR~~a~~lvk~yGg 185 (276)
T COG5275 154 RECLKGKVFVFTGDLKTLSRDDAKTLVKVYGG 185 (276)
T ss_pred cccccccEEEEecccccccchhHHHHHHHhCC
Confidence 479999999999996 789999998887764
No 74
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=20.08 E-value=79 Score=30.47 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=18.3
Q ss_pred hcCCcEEEEecchhhHHHHHHHHhhh
Q 030408 114 MRNKNIGFVGDSLNENFIVSFLCVLR 139 (178)
Q Consensus 114 lrgk~i~FVGDSl~Rn~~~SL~clL~ 139 (178)
++|++|++|||-..-+...|++..+.
T Consensus 172 l~glkVa~vGD~~~~rva~Sl~~~l~ 197 (525)
T PRK13376 172 NSFIHIALVGDLLHGRTVHSKVNGLK 197 (525)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHH
Confidence 57899999999754455556665544
Done!