Query 030408
Match_columns 178
No_of_seqs 140 out of 678
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 21:36:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030408.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030408hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hf7_A Putative acylhydrolase; 88.1 0.17 5.7E-06 39.2 1.5 15 115-129 25-39 (209)
2 3hp4_A GDSL-esterase; psychrot 85.3 0.25 8.6E-06 36.6 1.0 14 116-129 2-15 (185)
3 4h08_A Putative hydrolase; GDS 82.6 0.77 2.6E-05 34.6 2.8 22 118-139 22-43 (200)
4 3rjt_A Lipolytic protein G-D-S 82.2 0.49 1.7E-05 35.3 1.5 15 115-129 7-21 (216)
5 1yzf_A Lipase/acylhydrolase; s 77.0 0.63 2.2E-05 34.1 0.6 14 117-130 2-15 (195)
6 3mil_A Isoamyl acetate-hydroly 77.0 0.68 2.3E-05 35.3 0.8 15 114-128 1-15 (240)
7 1ivn_A Thioesterase I; hydrola 76.7 0.69 2.4E-05 34.5 0.8 14 116-129 1-14 (190)
8 2hsj_A Putative platelet activ 73.6 1.3 4.3E-05 33.4 1.6 16 115-130 33-48 (214)
9 2q0q_A ARYL esterase; SGNH hyd 73.2 0.97 3.3E-05 34.0 0.8 13 117-129 3-15 (216)
10 1vjg_A Putative lipase from th 70.2 1.1 3.7E-05 34.2 0.4 19 111-129 15-33 (218)
11 1fxw_F Alpha2, platelet-activa 70.0 1.8 6.2E-05 33.5 1.7 23 108-130 29-53 (229)
12 3dc7_A Putative uncharacterize 69.6 1.7 6E-05 33.3 1.5 16 114-129 19-34 (232)
13 3dci_A Arylesterase; SGNH_hydr 69.0 1.4 4.6E-05 34.3 0.8 14 117-130 24-37 (232)
14 1es9_A PAF-AH, platelet-activa 68.0 2 6.8E-05 33.2 1.5 16 115-130 37-52 (232)
15 3p94_A GDSL-like lipase; serin 67.7 1.7 5.7E-05 32.3 1.0 22 117-138 23-44 (204)
16 3bzw_A Putative lipase; protei 65.4 2.4 8.4E-05 33.9 1.7 16 114-129 24-39 (274)
17 2vpt_A Lipolytic enzyme; ester 61.3 2.7 9.3E-05 32.1 1.2 13 117-129 6-18 (215)
18 1vcc_A DNA topoisomerase I; DN 59.0 1.5 5.1E-05 30.8 -0.6 16 116-131 54-70 (77)
19 2w9x_A AXE2A, CJCE2B, putative 55.2 4.3 0.00015 34.4 1.5 15 115-129 141-155 (366)
20 2waa_A Acetyl esterase, xylan 55.1 3.8 0.00013 34.5 1.1 15 115-129 131-145 (347)
21 2wao_A Endoglucanase E; plant 52.8 4.1 0.00014 34.1 0.9 15 115-129 121-135 (341)
22 1k7c_A Rhamnogalacturonan acet 50.2 5.3 0.00018 31.3 1.1 13 118-130 2-14 (233)
23 3grf_A Ornithine carbamoyltran 49.2 9.5 0.00032 33.0 2.7 27 113-140 158-184 (328)
24 3r7f_A Aspartate carbamoyltran 48.6 9.6 0.00033 32.7 2.6 27 114-140 145-171 (304)
25 2o14_A Hypothetical protein YX 48.5 5.9 0.0002 34.0 1.3 16 114-129 160-175 (375)
26 4amu_A Ornithine carbamoyltran 47.7 10 0.00035 33.4 2.7 25 114-139 178-202 (365)
27 3t6g_B Breast cancer anti-estr 45.0 0.86 2.9E-05 38.2 -4.4 16 114-129 144-159 (229)
28 1pg5_A Aspartate carbamoyltran 44.9 13 0.00045 31.7 2.9 28 113-140 146-173 (299)
29 3csu_A Protein (aspartate carb 44.0 13 0.00043 32.0 2.6 28 113-140 151-178 (310)
30 3tpf_A Otcase, ornithine carba 43.9 13 0.00046 31.8 2.8 25 114-140 143-168 (307)
31 3skv_A SSFX3; jelly roll, GDSL 43.9 8.1 0.00028 33.7 1.4 14 116-129 185-198 (385)
32 4ekn_B Aspartate carbamoyltran 40.9 15 0.00052 31.4 2.7 27 114-140 149-175 (306)
33 1ml4_A Aspartate transcarbamoy 39.0 14 0.00049 31.6 2.2 27 114-140 153-179 (308)
34 3sds_A Ornithine carbamoyltran 38.4 16 0.00056 31.9 2.5 24 115-140 187-210 (353)
35 3gd5_A Otcase, ornithine carba 37.0 18 0.00061 31.3 2.5 24 114-139 155-178 (323)
36 4ep1_A Otcase, ornithine carba 36.7 18 0.00062 31.5 2.5 25 114-140 177-201 (340)
37 4f2g_A Otcase 1, ornithine car 36.3 19 0.00064 30.9 2.5 26 113-140 151-176 (309)
38 4a8t_A Putrescine carbamoyltra 35.8 19 0.00065 31.3 2.5 26 113-140 172-197 (339)
39 1oth_A Protein (ornithine tran 35.4 16 0.00056 31.4 2.0 25 114-140 153-177 (321)
40 4a8p_A Putrescine carbamoyltra 34.1 21 0.00072 31.3 2.5 26 113-140 150-175 (355)
41 2qru_A Uncharacterized protein 32.8 39 0.0013 26.3 3.7 23 116-138 95-117 (274)
42 3d6n_B Aspartate carbamoyltran 32.7 24 0.00083 30.0 2.6 28 113-140 143-170 (291)
43 4fe3_A Cytosolic 5'-nucleotida 32.6 19 0.00064 29.0 1.9 14 115-128 229-242 (297)
44 2yfk_A Aspartate/ornithine car 32.2 26 0.0009 31.3 2.9 27 114-140 186-217 (418)
45 1duv_G Octase-1, ornithine tra 32.1 26 0.00088 30.4 2.7 26 113-139 152-177 (333)
46 1dxh_A Ornithine carbamoyltran 32.0 25 0.00087 30.4 2.7 27 113-140 152-178 (335)
47 2i6u_A Otcase, ornithine carba 31.1 28 0.00095 29.7 2.7 27 113-140 145-171 (307)
48 1vlv_A Otcase, ornithine carba 30.5 29 0.00099 29.9 2.8 26 114-140 165-190 (325)
49 4h31_A Otcase, ornithine carba 29.2 31 0.001 30.0 2.7 25 114-139 179-203 (358)
50 2w37_A Ornithine carbamoyltran 28.8 32 0.0011 30.2 2.7 26 113-139 173-198 (359)
51 2ef0_A Ornithine carbamoyltran 28.7 30 0.001 29.5 2.5 25 113-139 151-175 (301)
52 1pvv_A Otcase, ornithine carba 28.7 30 0.001 29.6 2.5 25 114-140 153-177 (315)
53 1esc_A Esterase; 2.10A {Strept 25.2 16 0.00054 29.8 0.1 13 117-129 6-18 (306)
54 3l8h_A Putative haloacid dehal 25.1 51 0.0018 23.7 3.0 11 116-126 118-128 (179)
55 4ap9_A Phosphoserine phosphata 23.0 48 0.0016 23.5 2.4 21 107-127 141-161 (201)
56 2r8e_A 3-deoxy-D-manno-octulos 22.3 41 0.0014 25.1 2.0 21 107-127 103-128 (188)
57 2k6g_A Replication factor C su 21.9 58 0.002 23.5 2.6 29 113-141 32-62 (109)
58 1nnl_A L-3-phosphoserine phosp 21.2 60 0.0021 24.0 2.8 10 117-126 172-181 (225)
59 3e8m_A Acylneuraminate cytidyl 21.0 51 0.0017 23.5 2.2 12 116-127 95-106 (164)
60 3mmz_A Putative HAD family hyd 20.4 45 0.0016 24.7 1.9 17 117-133 103-119 (176)
No 1
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=88.12 E-value=0.17 Score=39.18 Aligned_cols=15 Identities=27% Similarity=0.716 Sum_probs=13.2
Q ss_pred cCCcEEEEecchhhH
Q 030408 115 RNKNIGFVGDSLNEN 129 (178)
Q Consensus 115 rgk~i~FVGDSl~Rn 129 (178)
.+++|+|+|||+++.
T Consensus 25 ~~~~Iv~~GDSit~g 39 (209)
T 4hf7_A 25 KEKRVVFMGNXITEG 39 (209)
T ss_dssp GGCCEEEEESHHHHH
T ss_pred CCCeEEEECcHHHhC
Confidence 478999999999985
No 2
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=85.27 E-value=0.25 Score=36.56 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=12.7
Q ss_pred CCcEEEEecchhhH
Q 030408 116 NKNIGFVGDSLNEN 129 (178)
Q Consensus 116 gk~i~FVGDSl~Rn 129 (178)
|++|+|+|||++.+
T Consensus 2 ~~~i~~~GDSit~G 15 (185)
T 3hp4_A 2 DNTILILGDXLSAA 15 (185)
T ss_dssp CEEEEEEECTTTTT
T ss_pred CCeEEEECCccccc
Confidence 78999999999974
No 3
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=82.60 E-value=0.77 Score=34.64 Aligned_cols=22 Identities=14% Similarity=0.394 Sum_probs=16.8
Q ss_pred cEEEEecchhhHHHHHHHHhhh
Q 030408 118 NIGFVGDSLNENFIVSFLCVLR 139 (178)
Q Consensus 118 ~i~FVGDSl~Rn~~~SL~clL~ 139 (178)
||+|+|||++..-...|...|.
T Consensus 22 rVl~iGDSit~G~~~~l~~~l~ 43 (200)
T 4h08_A 22 HVLLIGNSITRGYYGKVEAALK 43 (200)
T ss_dssp EEEEEESHHHHHHHHHHHHHTT
T ss_pred eEEEEchhHHhhhHHHHHHHhc
Confidence 5999999999885555555554
No 4
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=82.16 E-value=0.49 Score=35.31 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=13.2
Q ss_pred cCCcEEEEecchhhH
Q 030408 115 RNKNIGFVGDSLNEN 129 (178)
Q Consensus 115 rgk~i~FVGDSl~Rn 129 (178)
.+++|+|+|||++.+
T Consensus 7 ~~~~i~~~GDSit~g 21 (216)
T 3rjt_A 7 PGSKLVMVGDSITDC 21 (216)
T ss_dssp TTCEEEEEESHHHHT
T ss_pred CCCEEEEEecccccc
Confidence 478999999999965
No 5
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=77.05 E-value=0.63 Score=34.12 Aligned_cols=14 Identities=29% Similarity=0.681 Sum_probs=12.2
Q ss_pred CcEEEEecchhhHH
Q 030408 117 KNIGFVGDSLNENF 130 (178)
Q Consensus 117 k~i~FVGDSl~Rn~ 130 (178)
|+|+|+|||++.+.
T Consensus 2 ~~i~~~GDS~t~g~ 15 (195)
T 1yzf_A 2 RKIVLFGDSITAGY 15 (195)
T ss_dssp EEEEEEESHHHHCB
T ss_pred CeEEEEccccccCc
Confidence 58999999999873
No 6
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=76.99 E-value=0.68 Score=35.33 Aligned_cols=15 Identities=33% Similarity=0.527 Sum_probs=13.0
Q ss_pred hcCCcEEEEecchhh
Q 030408 114 MRNKNIGFVGDSLNE 128 (178)
Q Consensus 114 lrgk~i~FVGDSl~R 128 (178)
|..++|+|+|||++.
T Consensus 1 ~~~~~i~~~GDSit~ 15 (240)
T 3mil_A 1 MDYEKFLLFGDSITE 15 (240)
T ss_dssp CCCEEEEEEESHHHH
T ss_pred CCcccEEEEccchhh
Confidence 346799999999998
No 7
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=76.73 E-value=0.69 Score=34.53 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=12.2
Q ss_pred CCcEEEEecchhhH
Q 030408 116 NKNIGFVGDSLNEN 129 (178)
Q Consensus 116 gk~i~FVGDSl~Rn 129 (178)
.|+|+|+|||++.+
T Consensus 1 ~~~i~~~GDSit~g 14 (190)
T 1ivn_A 1 ADTLLILGDSLSAG 14 (190)
T ss_dssp CEEEEEEECHHHHC
T ss_pred CCcEEEEecCcccC
Confidence 37899999999985
No 8
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=73.63 E-value=1.3 Score=33.42 Aligned_cols=16 Identities=44% Similarity=0.692 Sum_probs=13.6
Q ss_pred cCCcEEEEecchhhHH
Q 030408 115 RNKNIGFVGDSLNENF 130 (178)
Q Consensus 115 rgk~i~FVGDSl~Rn~ 130 (178)
...+|+|+|||++.+.
T Consensus 33 ~~~~i~~~GDSit~g~ 48 (214)
T 2hsj_A 33 VEPNILFIGDSIVEYY 48 (214)
T ss_dssp SCCSEEEEESHHHHTC
T ss_pred ccCCEEEEecchhcCC
Confidence 3679999999999864
No 9
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=73.25 E-value=0.97 Score=34.05 Aligned_cols=13 Identities=46% Similarity=0.424 Sum_probs=11.5
Q ss_pred CcEEEEecchhhH
Q 030408 117 KNIGFVGDSLNEN 129 (178)
Q Consensus 117 k~i~FVGDSl~Rn 129 (178)
|+|+|+|||++..
T Consensus 3 ~~i~~~GDSit~G 15 (216)
T 2q0q_A 3 KRILCFGDSLTWG 15 (216)
T ss_dssp EEEEEEESHHHHT
T ss_pred ceEEEEecCcccC
Confidence 6899999999974
No 10
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=70.18 E-value=1.1 Score=34.23 Aligned_cols=19 Identities=32% Similarity=0.357 Sum_probs=14.6
Q ss_pred HHHhcCCcEEEEecchhhH
Q 030408 111 LSLMRNKNIGFVGDSLNEN 129 (178)
Q Consensus 111 l~~lrgk~i~FVGDSl~Rn 129 (178)
......++|+|+|||++.+
T Consensus 15 ~~~~~~~~i~~lGDSit~g 33 (218)
T 1vjg_A 15 KQSKTQIRICFVGDSFVNG 33 (218)
T ss_dssp --CCEEEEEEEEESHHHHT
T ss_pred cccCCCceEEEEccccccC
Confidence 3445678999999999986
No 11
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=69.97 E-value=1.8 Score=33.53 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=16.8
Q ss_pred HHHHHHh--cCCcEEEEecchhhHH
Q 030408 108 VKFLSLM--RNKNIGFVGDSLNENF 130 (178)
Q Consensus 108 ~~fl~~l--rgk~i~FVGDSl~Rn~ 130 (178)
..|.+.. .+.+|+|+|||++.+.
T Consensus 29 ~~~~~~~~~~~~~i~~~GDSit~g~ 53 (229)
T 1fxw_F 29 NRFVLDCKDKEPDVLFVGDSMVQLM 53 (229)
T ss_dssp HHHHHHHHHCCCSEEEEESHHHHGG
T ss_pred HHHHHHcccCCCCEEEEecchhcCC
Confidence 3444433 5779999999999875
No 12
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=69.63 E-value=1.7 Score=33.34 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=13.7
Q ss_pred hcCCcEEEEecchhhH
Q 030408 114 MRNKNIGFVGDSLNEN 129 (178)
Q Consensus 114 lrgk~i~FVGDSl~Rn 129 (178)
+..++|+|+|||++.+
T Consensus 19 ~~~~~i~~lGDSit~G 34 (232)
T 3dc7_A 19 VSFKRPAWLGDSITAN 34 (232)
T ss_dssp BCCSSEEEEESTTTST
T ss_pred CCcceEEEEccccccc
Confidence 4568999999999986
No 13
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=69.04 E-value=1.4 Score=34.32 Aligned_cols=14 Identities=36% Similarity=0.287 Sum_probs=11.8
Q ss_pred CcEEEEecchhhHH
Q 030408 117 KNIGFVGDSLNENF 130 (178)
Q Consensus 117 k~i~FVGDSl~Rn~ 130 (178)
|+|+|+|||++...
T Consensus 24 ~~I~~lGDSit~G~ 37 (232)
T 3dci_A 24 KTVLAFGDSLTWGA 37 (232)
T ss_dssp EEEEEEESHHHHTB
T ss_pred CEEEEEECccccCC
Confidence 68999999998643
No 14
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=68.01 E-value=2 Score=33.20 Aligned_cols=16 Identities=31% Similarity=0.613 Sum_probs=14.0
Q ss_pred cCCcEEEEecchhhHH
Q 030408 115 RNKNIGFVGDSLNENF 130 (178)
Q Consensus 115 rgk~i~FVGDSl~Rn~ 130 (178)
...+|+|+|||++.+.
T Consensus 37 ~~~~i~~~GDSit~g~ 52 (232)
T 1es9_A 37 KEPEVVFIGDSLVQLM 52 (232)
T ss_dssp CCCSEEEEESHHHHTH
T ss_pred CCCCEEEEechHhhcc
Confidence 4679999999999984
No 15
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=67.70 E-value=1.7 Score=32.32 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=15.5
Q ss_pred CcEEEEecchhhHHHHHHHHhh
Q 030408 117 KNIGFVGDSLNENFIVSFLCVL 138 (178)
Q Consensus 117 k~i~FVGDSl~Rn~~~SL~clL 138 (178)
.+|+|+|||++...-..+...|
T Consensus 23 ~~i~~~GDSit~g~~~~~~~~~ 44 (204)
T 3p94_A 23 SNVVFMGNSITDGWWPADSTFF 44 (204)
T ss_dssp EEEEEEESHHHHTHHHHCTTHH
T ss_pred ceEEEEccchhhcccchHHHhc
Confidence 3999999999987544433333
No 16
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=65.40 E-value=2.4 Score=33.85 Aligned_cols=16 Identities=31% Similarity=0.862 Sum_probs=13.4
Q ss_pred hcCCcEEEEecchhhH
Q 030408 114 MRNKNIGFVGDSLNEN 129 (178)
Q Consensus 114 lrgk~i~FVGDSl~Rn 129 (178)
..+++|+|+|||++.+
T Consensus 24 ~~~~~iv~lGDSiT~G 39 (274)
T 3bzw_A 24 WQGKKVGYIGDSITDP 39 (274)
T ss_dssp TTTCEEEEEESTTTCT
T ss_pred CCCCEEEEEecCcccC
Confidence 4578999999999863
No 17
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=61.30 E-value=2.7 Score=32.07 Aligned_cols=13 Identities=46% Similarity=0.393 Sum_probs=11.5
Q ss_pred CcEEEEecchhhH
Q 030408 117 KNIGFVGDSLNEN 129 (178)
Q Consensus 117 k~i~FVGDSl~Rn 129 (178)
.+|+|+|||++..
T Consensus 6 ~~i~~~GDSit~G 18 (215)
T 2vpt_A 6 IKIMPVGDSCTEG 18 (215)
T ss_dssp EEEEEEESHHHHT
T ss_pred eEEEecccccccC
Confidence 4899999999975
No 18
>1vcc_A DNA topoisomerase I; DNA binding; HET: DNA; 1.60A {Vaccinia virus} SCOP: d.121.1.1
Probab=59.04 E-value=1.5 Score=30.84 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=13.2
Q ss_pred CCcEEEEe-cchhhHHH
Q 030408 116 NKNIGFVG-DSLNENFI 131 (178)
Q Consensus 116 gk~i~FVG-DSl~Rn~~ 131 (178)
.++++||| ||-+|.||
T Consensus 54 ~~~lIfvG~DSKgrkQY 70 (77)
T 1vcc_A 54 LTRLIFVGSDSKGRRQY 70 (77)
T ss_dssp TTSEEEEEECTTSCEEE
T ss_pred hCceEEEeecCCCceee
Confidence 46799999 89888776
No 19
>2w9x_A AXE2A, CJCE2B, putative acetyl xylan esterase; carbohydrate esterase family 2, hydrolase; 2.00A {Cellvibrio japonicus}
Probab=55.15 E-value=4.3 Score=34.45 Aligned_cols=15 Identities=40% Similarity=0.815 Sum_probs=12.7
Q ss_pred cCCcEEEEecchhhH
Q 030408 115 RNKNIGFVGDSLNEN 129 (178)
Q Consensus 115 rgk~i~FVGDSl~Rn 129 (178)
..++|+|+|||++-.
T Consensus 141 ~~~~I~~iGDSIT~G 155 (366)
T 2w9x_A 141 RKRQIEFIGDSFTVG 155 (366)
T ss_dssp CCCEEEEEESHHHHT
T ss_pred CCceEEEEecccccc
Confidence 568999999999854
No 20
>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate binding, plant cell WALL degradation, hydrolase, cellulases; 1.80A {Cellvibrio japonicus}
Probab=55.10 E-value=3.8 Score=34.53 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=12.9
Q ss_pred cCCcEEEEecchhhH
Q 030408 115 RNKNIGFVGDSLNEN 129 (178)
Q Consensus 115 rgk~i~FVGDSl~Rn 129 (178)
..++|+|+|||++-.
T Consensus 131 ~~~~I~~iGDSIT~G 145 (347)
T 2waa_A 131 PQRKILVLGDSVTCG 145 (347)
T ss_dssp CSEEEEEEESTTTTT
T ss_pred CCceEEEeecccccc
Confidence 467999999999964
No 21
>2wao_A Endoglucanase E; plant cell WALL degradation, carbohydrate metabolism, polysaccharide degradation, esterase, hydrolase, cellulases; HET: BGC; 1.80A {Clostridium thermocellum} PDB: 2wab_A*
Probab=52.78 E-value=4.1 Score=34.06 Aligned_cols=15 Identities=33% Similarity=0.645 Sum_probs=12.8
Q ss_pred cCCcEEEEecchhhH
Q 030408 115 RNKNIGFVGDSLNEN 129 (178)
Q Consensus 115 rgk~i~FVGDSl~Rn 129 (178)
..++|+|+|||++-.
T Consensus 121 ~~~~I~~iGDSiT~G 135 (341)
T 2wao_A 121 LERKIEFIGDSITCA 135 (341)
T ss_dssp CSEEEEEEESHHHHT
T ss_pred CCceEEEEccccccC
Confidence 467999999999864
No 22
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=50.17 E-value=5.3 Score=31.35 Aligned_cols=13 Identities=23% Similarity=0.243 Sum_probs=11.1
Q ss_pred cEEEEecchhhHH
Q 030408 118 NIGFVGDSLNENF 130 (178)
Q Consensus 118 ~i~FVGDSl~Rn~ 130 (178)
+|+|+|||++.+.
T Consensus 2 ~I~~~GDS~t~g~ 14 (233)
T 1k7c_A 2 TVYLAGDSTMAKN 14 (233)
T ss_dssp EEEEECCTTTSTT
T ss_pred EEEEEecCCCcCC
Confidence 6899999999863
No 23
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=49.15 E-value=9.5 Score=33.03 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=22.7
Q ss_pred HhcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 113 LMRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 113 ~lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
.+.|.+|+||||-.+ |...|++..+..
T Consensus 158 ~l~gl~va~vGD~~~-~va~Sl~~~~~~ 184 (328)
T 3grf_A 158 GFKGIKFAYCGDSMN-NVTYDLMRGCAL 184 (328)
T ss_dssp TGGGCCEEEESCCSS-HHHHHHHHHHHH
T ss_pred ccCCcEEEEeCCCCc-chHHHHHHHHHH
Confidence 578999999999876 689999887763
No 24
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=48.65 E-value=9.6 Score=32.68 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=22.0
Q ss_pred hcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 114 MRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 114 lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
++|.+|+||||-..-|...|++..+..
T Consensus 145 l~glkva~vGD~~~~rva~Sl~~~~~~ 171 (304)
T 3r7f_A 145 FKGLTVSIHGDIKHSRVARSNAEVLTR 171 (304)
T ss_dssp CTTCEEEEESCCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCcchHHHHHHHHHH
Confidence 679999999997766788888877653
No 25
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=48.46 E-value=5.9 Score=34.05 Aligned_cols=16 Identities=38% Similarity=0.335 Sum_probs=13.8
Q ss_pred hcCCcEEEEecchhhH
Q 030408 114 MRNKNIGFVGDSLNEN 129 (178)
Q Consensus 114 lrgk~i~FVGDSl~Rn 129 (178)
..+++|+|+|||++.+
T Consensus 160 ~~~~~Iv~lGDSiT~G 175 (375)
T 2o14_A 160 VTNRTIYVGGDSTVCN 175 (375)
T ss_dssp CCCCEEEEEECTTTSC
T ss_pred CCCcEEEEecCccccC
Confidence 3567999999999987
No 26
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=47.72 E-value=10 Score=33.39 Aligned_cols=25 Identities=40% Similarity=0.462 Sum_probs=21.3
Q ss_pred hcCCcEEEEecchhhHHHHHHHHhhh
Q 030408 114 MRNKNIGFVGDSLNENFIVSFLCVLR 139 (178)
Q Consensus 114 lrgk~i~FVGDSl~Rn~~~SL~clL~ 139 (178)
++|++|+||||-.+ |.-.|++..+.
T Consensus 178 l~glkva~vGD~~n-nva~Sl~~~~~ 202 (365)
T 4amu_A 178 LKNKKIVFIGDYKN-NVGVSTMIGAA 202 (365)
T ss_dssp CTTCEEEEESSTTS-HHHHHHHHHHH
T ss_pred CCCCEEEEECCCCc-chHHHHHHHHH
Confidence 67999999999876 58899888775
No 27
>3t6g_B Breast cancer anti-estrogen resistance protein 1; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens}
Probab=45.04 E-value=0.86 Score=38.19 Aligned_cols=16 Identities=25% Similarity=0.669 Sum_probs=13.4
Q ss_pred hcCCcEEEEecchhhH
Q 030408 114 MRNKNIGFVGDSLNEN 129 (178)
Q Consensus 114 lrgk~i~FVGDSl~Rn 129 (178)
|.+.++|||||.+.|+
T Consensus 144 lsAHKLVfIGDTL~r~ 159 (229)
T 3t6g_B 144 LSAHKLVFIGDTLSRQ 159 (229)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred EEeeeeeeecchHHHh
Confidence 3478899999999885
No 28
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=44.87 E-value=13 Score=31.70 Aligned_cols=28 Identities=18% Similarity=0.231 Sum_probs=22.8
Q ss_pred HhcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 113 LMRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 113 ~lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
.++|.+|++|||-..-|...|++..+..
T Consensus 146 ~l~gl~va~vGD~~~~rva~Sl~~~~~~ 173 (299)
T 1pg5_A 146 TIDGLVFALLGDLKYARTVNSLLRILTR 173 (299)
T ss_dssp CSTTCEEEEEECCSSCHHHHHHHHHGGG
T ss_pred CcCCcEEEEECCCCCCchHHHHHHHHHh
Confidence 3679999999998765788898887754
No 29
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=44.02 E-value=13 Score=32.00 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=22.2
Q ss_pred HhcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 113 LMRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 113 ~lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
.++|.+|++|||-..-|...|++..+..
T Consensus 151 ~l~gl~va~vGD~~~~rva~Sl~~~~~~ 178 (310)
T 3csu_A 151 RLDNLHVAMVGDLKYGRTVHSLTQALAK 178 (310)
T ss_dssp CSSSCEEEEESCTTTCHHHHHHHHHHHT
T ss_pred CcCCcEEEEECCCCCCchHHHHHHHHHh
Confidence 3679999999997655788888887753
No 30
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=43.94 E-value=13 Score=31.79 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=20.6
Q ss_pred hc-CCcEEEEecchhhHHHHHHHHhhhh
Q 030408 114 MR-NKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 114 lr-gk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
++ |++|+|||| . .|...|++..+..
T Consensus 143 l~~gl~va~vGD-~-~~va~Sl~~~~~~ 168 (307)
T 3tpf_A 143 QNGIAKVAFIGD-S-NNMCNSWLITAAI 168 (307)
T ss_dssp GGGCCEEEEESC-S-SHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcC-C-CccHHHHHHHHHH
Confidence 67 999999999 3 5689999887763
No 31
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=43.93 E-value=8.1 Score=33.70 Aligned_cols=14 Identities=21% Similarity=0.221 Sum_probs=12.0
Q ss_pred CCcEEEEecchhhH
Q 030408 116 NKNIGFVGDSLNEN 129 (178)
Q Consensus 116 gk~i~FVGDSl~Rn 129 (178)
.++|+|+|||++..
T Consensus 185 ~~~Iv~~GDSiT~G 198 (385)
T 3skv_A 185 KPHWIHYGDSICHG 198 (385)
T ss_dssp CCEEEEEECSSCTT
T ss_pred CceEEEEeccccCC
Confidence 68999999999743
No 32
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=40.86 E-value=15 Score=31.39 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=21.0
Q ss_pred hcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 114 MRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 114 lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
+.|.+|++|||-..-|...|++..+..
T Consensus 149 l~glkva~vGD~~~~rva~Sl~~~~~~ 175 (306)
T 4ekn_B 149 IDGIKIAFVGDLKYGRTVHSLVYALSL 175 (306)
T ss_dssp STTCEEEEESCTTTCHHHHHHHHHHHT
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHh
Confidence 679999999997644677888776653
No 33
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=38.97 E-value=14 Score=31.56 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=22.2
Q ss_pred hcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 114 MRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 114 lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
++|.+|++|||-..-|...|++..+..
T Consensus 153 l~gl~va~vGD~~~~rva~Sl~~~~~~ 179 (308)
T 1ml4_A 153 IDGLKIGLLGDLKYGRTVHSLAEALTF 179 (308)
T ss_dssp SSSEEEEEESCTTTCHHHHHHHHHGGG
T ss_pred CCCeEEEEeCCCCcCchHHHHHHHHHH
Confidence 568999999997665788999888753
No 34
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=38.38 E-value=16 Score=31.89 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=20.2
Q ss_pred cCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 115 RNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 115 rgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
+|.+|+||||-. |...|++..+..
T Consensus 187 ~glkva~vGD~~--nva~Sl~~~l~~ 210 (353)
T 3sds_A 187 EGLKIAWVGDAN--NVLFDLAIAATK 210 (353)
T ss_dssp TTCEEEEESCCC--HHHHHHHHHHHH
T ss_pred CCCEEEEECCCc--hHHHHHHHHHHH
Confidence 799999999973 689999887763
No 35
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=37.05 E-value=18 Score=31.27 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=20.2
Q ss_pred hcCCcEEEEecchhhHHHHHHHHhhh
Q 030408 114 MRNKNIGFVGDSLNENFIVSFLCVLR 139 (178)
Q Consensus 114 lrgk~i~FVGDSl~Rn~~~SL~clL~ 139 (178)
++|++|+||||- -|...|++..+.
T Consensus 155 l~glkva~vGD~--~rva~Sl~~~~~ 178 (323)
T 3gd5_A 155 LAGLKLAYVGDG--NNVAHSLLLGCA 178 (323)
T ss_dssp CTTCEEEEESCC--CHHHHHHHHHHH
T ss_pred CCCCEEEEECCC--CcHHHHHHHHHH
Confidence 679999999997 678888887765
No 36
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=36.66 E-value=18 Score=31.50 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=20.7
Q ss_pred hcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 114 MRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 114 lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
++|.+|+||||- -|...|++..+..
T Consensus 177 l~glkva~vGD~--~nva~Sl~~~~~~ 201 (340)
T 4ep1_A 177 FKGIKLAYVGDG--NNVCHSLLLASAK 201 (340)
T ss_dssp CTTCEEEEESCC--CHHHHHHHHHHHH
T ss_pred CCCCEEEEECCC--chhHHHHHHHHHH
Confidence 679999999996 4588898887763
No 37
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=36.28 E-value=19 Score=30.88 Aligned_cols=26 Identities=27% Similarity=0.620 Sum_probs=21.1
Q ss_pred HhcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 113 LMRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 113 ~lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
.++|++|+||||- .|...|++..+..
T Consensus 151 ~l~glkva~vGD~--~~va~Sl~~~~~~ 176 (309)
T 4f2g_A 151 PIRGKTVAWVGDA--NNMLYTWIQAARI 176 (309)
T ss_dssp CCTTCEEEEESCC--CHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCC--cchHHHHHHHHHH
Confidence 3679999999994 5689999887763
No 38
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=35.79 E-value=19 Score=31.30 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=21.0
Q ss_pred HhcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 113 LMRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 113 ~lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
.++|++|+||||- -|...|++..+..
T Consensus 172 ~l~glkva~vGD~--~rva~Sl~~~~~~ 197 (339)
T 4a8t_A 172 KLEDCKVVFVGDA--TQVCFSLGLITTK 197 (339)
T ss_dssp CGGGCEEEEESSC--CHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCC--chhHHHHHHHHHH
Confidence 3678999999997 5788888887763
No 39
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=35.38 E-value=16 Score=31.42 Aligned_cols=25 Identities=16% Similarity=0.458 Sum_probs=20.6
Q ss_pred hcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 114 MRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 114 lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
+.|.+|++|||- .|...|++..+..
T Consensus 153 l~gl~va~vGD~--~~va~Sl~~~~~~ 177 (321)
T 1oth_A 153 LKGLTLSWIGDG--NNILHSIMMSAAK 177 (321)
T ss_dssp CTTCEEEEESCS--SHHHHHHHTTTGG
T ss_pred cCCcEEEEECCc--hhhHHHHHHHHHH
Confidence 679999999994 3799999887763
No 40
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=34.15 E-value=21 Score=31.30 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=21.1
Q ss_pred HhcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 113 LMRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 113 ~lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
.+.|.+|+||||- -|...|++..+..
T Consensus 150 ~l~glkva~vGD~--~rva~Sl~~~~~~ 175 (355)
T 4a8p_A 150 KLEDCKVVFVGDA--TQVCFSLGLITTK 175 (355)
T ss_dssp CGGGCEEEEESCC--CHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCC--chhHHHHHHHHHH
Confidence 3678999999997 6788888887763
No 41
>2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis}
Probab=32.85 E-value=39 Score=26.32 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=19.8
Q ss_pred CCcEEEEecchhhHHHHHHHHhh
Q 030408 116 NKNIGFVGDSLNENFIVSFLCVL 138 (178)
Q Consensus 116 gk~i~FVGDSl~Rn~~~SL~clL 138 (178)
.++++++|||.+=++-..++..+
T Consensus 95 ~~~i~l~G~SaGG~lA~~~a~~~ 117 (274)
T 2qru_A 95 NQSFGLCGRSAGGYLMLQLTKQL 117 (274)
T ss_dssp TCCEEEEEETHHHHHHHHHHHHH
T ss_pred CCcEEEEEECHHHHHHHHHHHHH
Confidence 67999999999999988887544
No 42
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=32.71 E-value=24 Score=29.95 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=22.3
Q ss_pred HhcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 113 LMRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 113 ~lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
.++|.+|++|||-..-|...|++..+..
T Consensus 143 ~l~gl~va~vGDl~~~rva~Sl~~~~~~ 170 (291)
T 3d6n_B 143 EVKDLRVLYVGDIKHSRVFRSGAPLLNM 170 (291)
T ss_dssp CCTTCEEEEESCCTTCHHHHHHHHHHHH
T ss_pred CcCCcEEEEECCCCCCchHHHHHHHHHH
Confidence 4779999999996666788888877653
No 43
>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A
Probab=32.64 E-value=19 Score=29.03 Aligned_cols=14 Identities=43% Similarity=0.612 Sum_probs=11.6
Q ss_pred cCCcEEEEecchhh
Q 030408 115 RNKNIGFVGDSLNE 128 (178)
Q Consensus 115 rgk~i~FVGDSl~R 128 (178)
.|+.+++|||++|=
T Consensus 229 ~~~~v~~vGDGiND 242 (297)
T 4fe3_A 229 DNSNIILLGDSQGD 242 (297)
T ss_dssp TCCEEEEEESSGGG
T ss_pred cCCEEEEEeCcHHH
Confidence 36689999999885
No 44
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}
Probab=32.18 E-value=26 Score=31.32 Aligned_cols=27 Identities=7% Similarity=0.206 Sum_probs=20.3
Q ss_pred hcCCcEEEEec---chhh--HHHHHHHHhhhh
Q 030408 114 MRNKNIGFVGD---SLNE--NFIVSFLCVLRA 140 (178)
Q Consensus 114 lrgk~i~FVGD---Sl~R--n~~~SL~clL~~ 140 (178)
++|++|++||| |.+| |.-.|++..+..
T Consensus 186 l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~ 217 (418)
T 2yfk_A 186 LKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTR 217 (418)
T ss_dssp GTTCEEEEECCCCSSSCCCSHHHHHHHHHHGG
T ss_pred cCCCEEEEEeccccccCccchHHHHHHHHHHH
Confidence 66899999987 3355 788888877753
No 45
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=32.08 E-value=26 Score=30.35 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=20.5
Q ss_pred HhcCCcEEEEecchhhHHHHHHHHhhh
Q 030408 113 LMRNKNIGFVGDSLNENFIVSFLCVLR 139 (178)
Q Consensus 113 ~lrgk~i~FVGDSl~Rn~~~SL~clL~ 139 (178)
.++|.+|++|||-.+ |...|++..+.
T Consensus 152 ~l~gl~ia~vGD~~~-~va~Sl~~~~~ 177 (333)
T 1duv_G 152 AFNEMTLVYAGDARN-NMGNSMLEAAA 177 (333)
T ss_dssp CGGGCEEEEESCTTS-HHHHHHHHHHH
T ss_pred CCCCcEEEEECCCcc-chHHHHHHHHH
Confidence 467899999999533 78888888765
No 46
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=31.97 E-value=25 Score=30.43 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=20.9
Q ss_pred HhcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 113 LMRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 113 ~lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
.++|.+|++|||-.+ |...|++..+..
T Consensus 152 ~l~gl~va~vGD~~~-~va~Sl~~~~~~ 178 (335)
T 1dxh_A 152 PLHDISYAYLGDARN-NMGNSLLLIGAK 178 (335)
T ss_dssp CGGGCEEEEESCCSS-HHHHHHHHHHHH
T ss_pred CcCCeEEEEecCCcc-chHHHHHHHHHH
Confidence 367899999999533 788888887753
No 47
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=31.11 E-value=28 Score=29.74 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=20.7
Q ss_pred HhcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 113 LMRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 113 ~lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
.++|.+|++|||-. -|...|++..+..
T Consensus 145 ~l~gl~va~vGD~~-~rva~Sl~~~~~~ 171 (307)
T 2i6u_A 145 ALRGLRLSYFGDGA-NNMAHSLLLGGVT 171 (307)
T ss_dssp CCTTCEEEEESCTT-SHHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCC-cCcHHHHHHHHHH
Confidence 36799999999952 3788888887753
No 48
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=30.51 E-value=29 Score=29.92 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=20.4
Q ss_pred hcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 114 MRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 114 lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
++|.+|++|||--+ |...|++..+..
T Consensus 165 l~gl~va~vGD~~~-rva~Sl~~~~~~ 190 (325)
T 1vlv_A 165 LKGVKVVFMGDTRN-NVATSLMIACAK 190 (325)
T ss_dssp STTCEEEEESCTTS-HHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCc-CcHHHHHHHHHH
Confidence 67999999999423 688888887753
No 49
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=29.25 E-value=31 Score=30.04 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=20.0
Q ss_pred hcCCcEEEEecchhhHHHHHHHHhhh
Q 030408 114 MRNKNIGFVGDSLNENFIVSFLCVLR 139 (178)
Q Consensus 114 lrgk~i~FVGDSl~Rn~~~SL~clL~ 139 (178)
+.|.+|++|||--+ |...|++..+.
T Consensus 179 l~gl~ia~vGD~~~-~va~S~~~~~~ 203 (358)
T 4h31_A 179 LADIQFAYLGDARN-NVGNSLMVGAA 203 (358)
T ss_dssp GGGCEEEEESCTTS-HHHHHHHHHHH
T ss_pred cCceEEEecCCCCc-ccchHHHHHHH
Confidence 56789999999644 68888887775
No 50
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=28.84 E-value=32 Score=30.23 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=20.5
Q ss_pred HhcCCcEEEEecchhhHHHHHHHHhhh
Q 030408 113 LMRNKNIGFVGDSLNENFIVSFLCVLR 139 (178)
Q Consensus 113 ~lrgk~i~FVGDSl~Rn~~~SL~clL~ 139 (178)
.++|.+|++|||-.+ |...|++..+.
T Consensus 173 ~l~gl~va~vGD~~~-rva~Sl~~~~~ 198 (359)
T 2w37_A 173 KLQGLTLTFMGDGRN-NVANSLLVTGA 198 (359)
T ss_dssp CCTTCEEEEESCTTS-HHHHHHHHHHH
T ss_pred CcCCeEEEEECCCcc-chHHHHHHHHH
Confidence 367999999999533 68888887775
No 51
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=28.71 E-value=30 Score=29.49 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=20.3
Q ss_pred HhcCCcEEEEecchhhHHHHHHHHhhh
Q 030408 113 LMRNKNIGFVGDSLNENFIVSFLCVLR 139 (178)
Q Consensus 113 ~lrgk~i~FVGDSl~Rn~~~SL~clL~ 139 (178)
.++|.+|++|||- -|...|++..+.
T Consensus 151 ~l~gl~ia~vGD~--~rva~Sl~~~~~ 175 (301)
T 2ef0_A 151 GLAGLEVAWVGDG--NNVLNSLLEVAP 175 (301)
T ss_dssp CCTTCEEEEESCC--CHHHHHHHHHHH
T ss_pred CcCCcEEEEECCC--chhHHHHHHHHH
Confidence 3679999999995 468888887775
No 52
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=28.65 E-value=30 Score=29.64 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=20.3
Q ss_pred hcCCcEEEEecchhhHHHHHHHHhhhh
Q 030408 114 MRNKNIGFVGDSLNENFIVSFLCVLRA 140 (178)
Q Consensus 114 lrgk~i~FVGDSl~Rn~~~SL~clL~~ 140 (178)
++|.+|++|||- -|...|++..+..
T Consensus 153 l~gl~va~vGD~--~rva~Sl~~~~~~ 177 (315)
T 1pvv_A 153 IKGVKVVYVGDG--NNVAHSLMIAGTK 177 (315)
T ss_dssp CTTCEEEEESCC--CHHHHHHHHHHHH
T ss_pred cCCcEEEEECCC--cchHHHHHHHHHH
Confidence 679999999995 4688888887753
No 53
>1esc_A Esterase; 2.10A {Streptomyces scabiei} SCOP: c.23.10.1 PDB: 1esd_A 1ese_A
Probab=25.25 E-value=16 Score=29.76 Aligned_cols=13 Identities=38% Similarity=0.473 Sum_probs=10.9
Q ss_pred CcEEEEecchhhH
Q 030408 117 KNIGFVGDSLNEN 129 (178)
Q Consensus 117 k~i~FVGDSl~Rn 129 (178)
++++++|||++-+
T Consensus 6 ~~~valGDS~taG 18 (306)
T 1esc_A 6 VPTVFFGDSYTAN 18 (306)
T ss_dssp EEEEECCSHHHHT
T ss_pred ceEEEECchhhhC
Confidence 4799999999853
No 54
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=25.12 E-value=51 Score=23.71 Aligned_cols=11 Identities=45% Similarity=0.519 Sum_probs=9.5
Q ss_pred CCcEEEEecch
Q 030408 116 NKNIGFVGDSL 126 (178)
Q Consensus 116 gk~i~FVGDSl 126 (178)
-..++|||||.
T Consensus 118 ~~~~~~vGD~~ 128 (179)
T 3l8h_A 118 LAGVPAVGDSL 128 (179)
T ss_dssp CTTCEEEESSH
T ss_pred HHHEEEECCCH
Confidence 46899999997
No 55
>4ap9_A Phosphoserine phosphatase; hydrolase, haloacid dehalogenase superfamily, NDSB; HET: 1PS; 1.78A {Thermococcus onnurineus} PDB: 4b6j_A
Probab=23.02 E-value=48 Score=23.54 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=16.2
Q ss_pred hHHHHHHhcCCcEEEEecchh
Q 030408 107 PVKFLSLMRNKNIGFVGDSLN 127 (178)
Q Consensus 107 ~~~fl~~lrgk~i~FVGDSl~ 127 (178)
-...++.+....+++||||.+
T Consensus 141 k~~~l~~l~~~~~i~iGD~~~ 161 (201)
T 4ap9_A 141 KGEFLKRFRDGFILAMGDGYA 161 (201)
T ss_dssp HHHHHGGGTTSCEEEEECTTC
T ss_pred HHHHHHhcCcCcEEEEeCCHH
Confidence 445666667789999999985
No 56
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*
Probab=22.33 E-value=41 Score=25.10 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=14.3
Q ss_pred hHHHHHHhc--C---CcEEEEecchh
Q 030408 107 PVKFLSLMR--N---KNIGFVGDSLN 127 (178)
Q Consensus 107 ~~~fl~~lr--g---k~i~FVGDSl~ 127 (178)
+.-+.+.++ | ..++|||||.+
T Consensus 103 ~~~~~~~~~~~g~~~~~~~~iGD~~~ 128 (188)
T 2r8e_A 103 LIAFSDLLEKLAIAPENVAYVGDDLI 128 (188)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEESSGG
T ss_pred HHHHHHHHHHcCCCHHHEEEECCCHH
Confidence 555555443 2 68999999984
No 57
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=21.93 E-value=58 Score=23.49 Aligned_cols=29 Identities=7% Similarity=-0.015 Sum_probs=24.5
Q ss_pred HhcCCcEEEEecc--hhhHHHHHHHHhhhhc
Q 030408 113 LMRNKNIGFVGDS--LNENFIVSFLCVLRAA 141 (178)
Q Consensus 113 ~lrgk~i~FVGDS--l~Rn~~~SL~clL~~~ 141 (178)
+|.|++++|-|.- ++|..+..++..+-..
T Consensus 32 ~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~ 62 (109)
T 2k6g_A 32 CLEGLIFVITGVLESIERDEAKSLIERYGGK 62 (109)
T ss_dssp TTTTCEEEEESBCSSCCHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEeeeCCCCCHHHHHHHHHHcCCE
Confidence 5899999999985 5799999999876543
No 58
>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A
Probab=21.25 E-value=60 Score=23.99 Aligned_cols=10 Identities=40% Similarity=0.624 Sum_probs=9.1
Q ss_pred CcEEEEecch
Q 030408 117 KNIGFVGDSL 126 (178)
Q Consensus 117 k~i~FVGDSl 126 (178)
+.+++||||.
T Consensus 172 ~~~~~vGDs~ 181 (225)
T 1nnl_A 172 KKIIMIGDGA 181 (225)
T ss_dssp SCEEEEESSH
T ss_pred CcEEEEeCcH
Confidence 6899999997
No 59
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=20.98 E-value=51 Score=23.51 Aligned_cols=12 Identities=33% Similarity=0.841 Sum_probs=9.9
Q ss_pred CCcEEEEecchh
Q 030408 116 NKNIGFVGDSLN 127 (178)
Q Consensus 116 gk~i~FVGDSl~ 127 (178)
-+.++|||||.+
T Consensus 95 ~~~~~~vGD~~~ 106 (164)
T 3e8m_A 95 LEQVAYIGDDLN 106 (164)
T ss_dssp GGGEEEECCSGG
T ss_pred HHHEEEECCCHH
Confidence 358999999984
No 60
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=20.41 E-value=45 Score=24.66 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=12.5
Q ss_pred CcEEEEecchhhHHHHH
Q 030408 117 KNIGFVGDSLNENFIVS 133 (178)
Q Consensus 117 k~i~FVGDSl~Rn~~~S 133 (178)
+.+++||||.+=-....
T Consensus 103 ~~~~~vGD~~nD~~~~~ 119 (176)
T 3mmz_A 103 ERVLYVGNDVNDLPCFA 119 (176)
T ss_dssp GGEEEEECSGGGHHHHH
T ss_pred HHEEEEcCCHHHHHHHH
Confidence 67999999987544433
Done!