BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030409
         (178 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q022E5|HEM1_SOLUE Glutamyl-tRNA reductase OS=Solibacter usitatus (strain Ellin6076)
           GN=hemA PE=3 SV=1
          Length = 421

 Score = 33.9 bits (76), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 4/64 (6%)

Query: 60  SRCHAPSVMLAN-FIATPIE---LSLVVPFLRFGEALTGGPHFPLNSDALKRVLTGKASQ 115
           +R H  +V +A  F  TP+E    + ++P +    A +G PH+ L+ D ++RV++ + ++
Sbjct: 213 NRTHERAVDMAKLFQGTPVEYARFTAMLPEVDILIASSGAPHYILHKDEMQRVISARRNK 272

Query: 116 EVLL 119
            + L
Sbjct: 273 PMFL 276


>sp|Q9FNU2|AB25B_ORYSJ ABC transporter B family member 25 OS=Oryza sativa subsp. japonica
           GN=OsABCB25 PE=2 SV=1
          Length = 641

 Score = 32.7 bits (73), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 21/29 (72%)

Query: 126 LGWLVATPFILTALYLVLLPVFKILVRKF 154
           LG++ AT + LT L LV++PV  I VRKF
Sbjct: 193 LGFMFATSWKLTLLALVIVPVISIAVRKF 221


>sp|A8E0Y8|IGSF2_MOUSE Immunoglobulin superfamily member 2 OS=Mus musculus GN=Cd101 PE=2
            SV=1
          Length = 1033

 Score = 30.4 bits (67), Expect = 5.8,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%)

Query: 107  RVLTGKASQEVLLSIAHALLGWLVATPFILTALYLVLLPVFKILVRKFSSAALSSKKE 164
            RVL  + +   L+  +  LL +L+  PF++  L            RK S  +LS+KKE
Sbjct: 953  RVLRSEPTVSSLICSSGPLLHFLIVCPFVMLLLLATSFLCLYRKARKLSQLSLSAKKE 1010


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.327    0.141    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,199,318
Number of Sequences: 539616
Number of extensions: 2138800
Number of successful extensions: 6614
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6605
Number of HSP's gapped (non-prelim): 13
length of query: 178
length of database: 191,569,459
effective HSP length: 110
effective length of query: 68
effective length of database: 132,211,699
effective search space: 8990395532
effective search space used: 8990395532
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)