Query 030409
Match_columns 178
No_of_seqs 131 out of 169
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 13:17:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030409.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030409hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09835 DUF2062: Uncharacteri 100.0 4.3E-27 9.3E-32 185.7 17.5 145 8-154 2-150 (154)
2 TIGR03546 conserved hypothetic 99.9 2E-24 4.3E-29 173.2 15.6 139 11-157 2-142 (154)
3 COG3216 Uncharacterized protei 99.9 1.1E-22 2.3E-27 165.6 13.9 142 7-150 25-168 (184)
4 PF09835 DUF2062: Uncharacteri 95.6 0.096 2.1E-06 41.1 8.5 35 119-153 119-153 (154)
5 PF01970 TctA: Tripartite tric 85.0 28 0.0006 32.2 13.1 35 28-64 5-39 (419)
6 COG3216 Uncharacterized protei 79.5 3.3 7.1E-05 34.5 4.4 40 119-158 132-172 (184)
7 COG1176 PotB ABC-type spermidi 79.0 31 0.00068 30.4 10.6 82 63-145 14-96 (287)
8 PF03419 Peptidase_U4: Sporula 72.3 53 0.0011 28.4 10.2 30 15-44 23-52 (293)
9 PF11391 DUF2798: Protein of u 65.9 23 0.0005 23.7 5.3 24 126-154 36-59 (60)
10 TIGR02854 spore_II_GA sigma-E 51.7 60 0.0013 28.3 6.8 32 15-46 23-54 (288)
11 TIGR00220 mscL large conductan 43.2 55 0.0012 25.7 4.7 30 123-153 69-98 (127)
12 PF02447 GntP_permease: GntP f 43.0 2.9E+02 0.0062 25.9 12.7 33 123-155 101-133 (441)
13 PRK10983 putative inner membra 40.5 1.2E+02 0.0026 27.3 7.2 22 135-156 40-61 (368)
14 PF07019 Rab5ip: Rab5-interact 38.1 65 0.0014 22.6 4.1 30 27-56 7-36 (81)
15 PF11990 DUF3487: Protein of u 37.8 1.9E+02 0.0041 22.3 8.2 31 125-155 47-77 (121)
16 TIGR00267 conserved hypothetic 37.2 90 0.002 25.1 5.3 24 23-46 86-110 (169)
17 TIGR02359 thiW thiW protein. L 34.3 2.5E+02 0.0054 22.7 11.3 32 28-59 7-46 (160)
18 PRK13955 mscL large-conductanc 32.2 1E+02 0.0022 24.4 4.6 28 125-153 69-96 (130)
19 COG3030 FxsA Protein affecting 30.7 3E+02 0.0064 22.4 7.4 83 67-150 21-107 (158)
20 PRK14417 membrane protein; Pro 29.2 2.1E+02 0.0047 24.6 6.5 17 32-48 110-126 (232)
21 PF07543 PGA2: Protein traffic 27.5 60 0.0013 25.8 2.7 19 135-153 22-40 (140)
22 PRK13954 mscL large-conductanc 25.5 1.3E+02 0.0028 23.4 4.1 29 124-153 65-93 (119)
23 COG3333 Uncharacterized protei 25.5 6.2E+02 0.013 24.4 12.4 52 14-67 6-60 (504)
24 KOG3415 Putative Rab5-interact 25.3 79 0.0017 24.8 2.9 24 28-51 50-73 (129)
25 COG1177 PotC ABC-type spermidi 25.1 4.1E+02 0.0089 23.1 7.7 45 100-144 49-94 (267)
26 TIGR03546 conserved hypothetic 24.9 1.7E+02 0.0037 23.5 4.9 27 129-155 118-144 (154)
27 COG0786 GltS Na+/glutamate sym 24.7 5.9E+02 0.013 23.9 10.0 20 144-163 177-196 (404)
28 KOG4619 Uncharacterized conser 24.3 36 0.00077 25.5 0.8 20 27-46 73-92 (105)
29 cd02437 CCC1_like_1 CCC1-relat 23.6 2.9E+02 0.0064 22.0 6.1 26 21-46 89-115 (175)
30 COG0344 Predicted membrane pro 23.5 2.2E+02 0.0048 24.0 5.5 47 29-76 109-155 (200)
31 TIGR02230 ATPase_gene1 F0F1-AT 23.3 1.9E+02 0.0042 21.7 4.6 38 115-158 36-74 (100)
32 PF01741 MscL: Large-conductan 23.0 30 0.00064 27.0 0.2 31 126-157 74-104 (128)
33 COG4129 Predicted membrane pro 23.0 2.8E+02 0.0062 25.0 6.4 28 31-58 71-99 (332)
34 PRK13952 mscL large-conductanc 22.8 1.5E+02 0.0032 23.7 4.1 27 126-153 89-115 (142)
35 TIGR03226 PhnU 2-aminoethylpho 22.5 5.1E+02 0.011 22.3 10.2 44 99-142 75-119 (312)
36 PRK09430 djlA Dna-J like membr 22.1 1.4E+02 0.003 25.9 4.1 32 117-148 3-34 (267)
37 TIGR03255 PhnV 2-aminoethylpho 21.8 4.8E+02 0.01 21.8 9.0 45 99-143 52-96 (272)
38 PRK13953 mscL large-conductanc 21.5 2.1E+02 0.0046 22.4 4.7 29 126-155 70-98 (125)
39 PF11057 Cortexin: Cortexin of 21.2 1.5E+02 0.0033 21.5 3.5 24 141-164 43-66 (81)
40 KOG2493 Na+/Pi symporter [Inor 21.0 2.1E+02 0.0045 27.6 5.2 38 121-158 231-268 (512)
41 PF01306 LacY_symp: LacY proto 20.1 7E+02 0.015 23.1 10.5 25 21-45 38-64 (412)
No 1
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=99.95 E-value=4.3e-27 Score=185.67 Aligned_cols=145 Identities=22% Similarity=0.374 Sum_probs=118.8
Q ss_pred HHhhHHHHHHHHhcCCCHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHhccCHHHHHHHHHhhhhhhHHHHHHH-H
Q 030409 8 NKRIVEPLLQILRRGAEPNQLAFSTALGITLGLFPICGAAVFLCGMAIAALRSRCHAPSVMLANFIATPIELSLVVPF-L 86 (178)
Q Consensus 8 ~~~i~~~ll~iLr~~~sP~~iA~s~AlGvfiGi~P~~G~~t~l~~~la~~l~~RlN~~aa~~~~~i~~Pl~~~li~pf-~ 86 (178)
.|.+++.++++++++.||+++|.|+|+|+|+|++|++|+|+++|+++|+++ |+|+++++++++++||+|+++++++ +
T Consensus 2 ~R~~~~~~~~~l~~~~~p~~iA~g~AiG~fig~~P~~g~~~~l~~~la~~~--r~N~~aa~~~~~i~nPlt~~~i~~~~y 79 (154)
T PF09835_consen 2 KRRFRYRLLRLLRWGGSPHSIALGFAIGVFIGFLPIFGLQTVLAIALALLF--RLNKPAAILGTWISNPLTIPPIYPLSY 79 (154)
T ss_pred ccHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH--HccHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 457888899999999999999999999999999999999999999999988 9999999999999999999999885 8
Q ss_pred HHHHHHhcCCCCCCCHH---HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030409 87 RFGEALTGGPHFPLNSD---ALKRVLTGKASQEVLLSIAHALLGWLVATPFILTALYLVLLPVFKILVRKF 154 (178)
Q Consensus 87 ~~G~~l~g~~~~~l~~~---~l~~~l~~~~~~~~~~~~~~Al~gwlv~ap~~~~~~Y~l~~p~~k~l~~k~ 154 (178)
++|++++|.+..++... +...+-..+..+.+.......++|+++.+++.+++.|++.+++.++.++|-
T Consensus 80 ~vG~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~i~~~v~~~i~Y~l~~~~~~~~r~~r 150 (154)
T PF09835_consen 80 RVGSFLLGGPPEEFAALFEFDWSLMHWSDLLESLWEFGLPFLLGSLILGIVLGIISYFLVYFLVRKYRKRR 150 (154)
T ss_pred HHHHHHhCCChhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999886111100 000000011123445556677899999999999999999999999997764
No 2
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=99.92 E-value=2e-24 Score=173.16 Aligned_cols=139 Identities=17% Similarity=0.233 Sum_probs=114.3
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHhccCHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 030409 11 IVEPLLQILRRGAEPNQLAFSTALGITLGLFPICGAAVFLCGMAIAALRSRCHAPSVMLANFIATPIELSLVVPFLRFGE 90 (178)
Q Consensus 11 i~~~ll~iLr~~~sP~~iA~s~AlGvfiGi~P~~G~~t~l~~~la~~l~~RlN~~aa~~~~~i~~Pl~~~li~pf~~~G~ 90 (178)
...+++|++|+++||++||.|+|+|+|+|++|++|+|+++++++|+++ |+|+.++.++++++||+++++.+..+++|+
T Consensus 2 ~l~k~lk~l~~~~tP~~iA~g~a~Gvf~g~~P~~glh~~~~~~la~~l--r~N~~~a~l~t~v~nplty~l~~~s~~~G~ 79 (154)
T TIGR03546 2 LLFSLFKALNSNTSPAQLALAVALGMILGLTPFLNLHNIALLFLVLIL--RVNLGAFILSAILFSGLAYLLDPISDQVGE 79 (154)
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH--HhHHHHHHHHHHHcCcchhhhHHHHHHHHH
Confidence 355788999999999999999999999999999999999999999999 999999999999999999977566799999
Q ss_pred HHhcCCCCCCCHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 030409 91 ALTGGPHFPLNSDALKRVLTGK--ASQEVLLSIAHALLGWLVATPFILTALYLVLLPVFKILVRKFSSA 157 (178)
Q Consensus 91 ~l~g~~~~~l~~~~l~~~l~~~--~~~~~~~~~~~Al~gwlv~ap~~~~~~Y~l~~p~~k~l~~k~~~~ 157 (178)
+++|.+..+ +.++.+.+.. ...++.+++ ++|+++.+-+.+.++|++.+|+.++.|+|..+.
T Consensus 80 ~lL~~~~~~---~~~~~l~~~~~~~l~~f~~tl---~~Gg~l~Gli~~~~~Y~ls~~lI~~Yr~~~~~~ 142 (154)
T TIGR03546 80 WLLEQESLQ---PVFTALYNTPLVPLARFNNTI---VMGSFVVGLILLPPAFAISKVIIAKYRKRIVAW 142 (154)
T ss_pred HHhCCCCcc---hHHHHHHhCcHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999976322 1233333111 234555555 788999999899999999999988888876543
No 3
>COG3216 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.89 E-value=1.1e-22 Score=165.64 Aligned_cols=142 Identities=18% Similarity=0.215 Sum_probs=119.8
Q ss_pred HHHhhHHHHHHHHhcCCCHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHhccCHHHHHHHHHhhhhhhHHHHHHH-
Q 030409 7 FNKRIVEPLLQILRRGAEPNQLAFSTALGITLGLFPICGAAVFLCGMAIAALRSRCHAPSVMLANFIATPIELSLVVPF- 85 (178)
Q Consensus 7 ~~~~i~~~ll~iLr~~~sP~~iA~s~AlGvfiGi~P~~G~~t~l~~~la~~l~~RlN~~aa~~~~~i~~Pl~~~li~pf- 85 (178)
|+|..++-.+++||...|||.+|.++|.|+|.+++|++|+|++++..+|+.+ |.|++++.++++++||+|+|+++.+
T Consensus 25 ~sr~~ry~~~riLrl~atphsvA~gvAaG~faaf~Pf~g~h~iiAa~La~~l--~gNl~aAa~~t~l~NPlT~P~I~~~t 102 (184)
T COG3216 25 FSRSGRYLYKRILRLLATPHSVAAGVAAGVFAAFFPFFGLHMIIAAVLAIVL--RGNLVAAALGTWLANPLTMPFIWGAT 102 (184)
T ss_pred HHHHHHHHhhhhhhhcCCchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH--hccHHHHHHHhHhcCCcccceeeeee
Confidence 6777888999999999999999999999999999999999999999999999 9999999999999999999999876
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030409 86 LRFGEALTGGPHFPLNSDALKRVLTGKASQEVLLSIA-HALLGWLVATPFILTALYLVLLPVFKIL 150 (178)
Q Consensus 86 ~~~G~~l~g~~~~~l~~~~l~~~l~~~~~~~~~~~~~-~Al~gwlv~ap~~~~~~Y~l~~p~~k~l 150 (178)
+++|.++++.+..+.-.+++..+++.+-..++|.-++ ..++|.++++.+.+++.|.+.+.-+.++
T Consensus 103 yelG~~ll~~~~~s~~~~~l~~~~~~~el~~lw~P~l~pm~vgav~~~a~~~ll~y~~~r~~v~~f 168 (184)
T COG3216 103 YELGAWLLQRPAQSVGPVHLTWMWQSLELSSLWGPVLKPMLVGAVPAGAIGGLLFYGLTRYSVTRF 168 (184)
T ss_pred HhhhhHHhcCCCCCCCchHHHHHHHHhHHHHhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999876655567777776655677776554 5556666666666666776666665555
No 4
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=95.62 E-value=0.096 Score=41.10 Aligned_cols=35 Identities=11% Similarity=0.019 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030409 119 LSIAHALLGWLVATPFILTALYLVLLPVFKILVRK 153 (178)
Q Consensus 119 ~~~~~Al~gwlv~ap~~~~~~Y~l~~p~~k~l~~k 153 (178)
..++++++-..+++++...++|.+..-++|+-+||
T Consensus 119 ~~~~G~~i~~~v~~~i~Y~l~~~~~~~~r~~r~~~ 153 (154)
T PF09835_consen 119 PFLLGSLILGIVLGIISYFLVYFLVRKYRKRRRKR 153 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444445556666666667777776666665543
No 5
>PF01970 TctA: Tripartite tricarboxylate transporter TctA family; InterPro: IPR002823 Members of this prokaryotic family have no known function. Members are predicted to be integral membrane proteins and are similar to a protein in a tartrate utilisation region (TAR) of Agrobacterium vitis a common pathogen of grapevine. Most grapevine strains utilise tartrate, an abundant compound in grapevine [].
Probab=85.03 E-value=28 Score=32.19 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=27.9
Q ss_pred HHHHHHHHhhhhccccchHHHHHHHHHHHHHHhccCH
Q 030409 28 LAFSTALGITLGLFPICGAAVFLCGMAIAALRSRCHA 64 (178)
Q Consensus 28 iA~s~AlGvfiGi~P~~G~~t~l~~~la~~l~~RlN~ 64 (178)
+..++.+|+++|..|=++.++.+++.+...+ -++.
T Consensus 5 ~~~Gv~~G~i~G~iPGl~~~~~ialllp~t~--~l~p 39 (419)
T PF01970_consen 5 ILLGVLLGIIIGAIPGLHPTMAIALLLPFTF--SLDP 39 (419)
T ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHhc--ccCH
Confidence 5689999999999998888888887777655 4444
No 6
>COG3216 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.55 E-value=3.3 Score=34.51 Aligned_cols=40 Identities=18% Similarity=0.036 Sum_probs=33.8
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 030409 119 LSIA-HALLGWLVATPFILTALYLVLLPVFKILVRKFSSAA 158 (178)
Q Consensus 119 ~~~~-~Al~gwlv~ap~~~~~~Y~l~~p~~k~l~~k~~~~~ 158 (178)
.++| -.+.+.+|++.+..++.|++++.+-++....|.++-
T Consensus 132 ~~lw~P~l~pm~vgav~~~a~~~ll~y~~~r~~v~~f~~rR 172 (184)
T COG3216 132 SSLWGPVLKPMLVGAVPAGAIGGLLFYGLTRYSVTRFRERR 172 (184)
T ss_pred HHhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 677889999999999999999999999998887653
No 7
>COG1176 PotB ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]
Probab=78.95 E-value=31 Score=30.41 Aligned_cols=82 Identities=21% Similarity=0.138 Sum_probs=54.0
Q ss_pred CHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030409 63 HAPSVMLANFIATPIELSLVVPFLRFGEALTGGPHFPLNSDALKRVLTG-KASQEVLLSIAHALLGWLVATPFILTALYL 141 (178)
Q Consensus 63 N~~aa~~~~~i~~Pl~~~li~pf~~~G~~l~g~~~~~l~~~~l~~~l~~-~~~~~~~~~~~~Al~gwlv~ap~~~~~~Y~ 141 (178)
++......-++.-|+.+...+.|...+......+. ..+.++.++.+++ .+.+-++.+++.|.+..++|..+...+.|+
T Consensus 14 ~~~~~~l~~~~~~p~~~~l~~~f~~~~~~~~~~~~-~~~l~nY~~~~~~~~y~~v~~~Sl~iA~~~T~~~lligyP~Ay~ 92 (287)
T COG1176 14 APPLLWLLLFFLLPLLIVLVPSFLLPLLSFFDYSG-VFTLGNYARLLTDSLYLTVLLRSLWIAALVTLICLLLGYPVAYF 92 (287)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc-cccHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555556555555556555554444332 2235677788876 456888999999988888888888888887
Q ss_pred HHHH
Q 030409 142 VLLP 145 (178)
Q Consensus 142 l~~p 145 (178)
+.+.
T Consensus 93 la~~ 96 (287)
T COG1176 93 LARS 96 (287)
T ss_pred HHhC
Confidence 7763
No 8
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=72.32 E-value=53 Score=28.41 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=24.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhhhccccc
Q 030409 15 LLQILRRGAEPNQLAFSTALGITLGLFPIC 44 (178)
Q Consensus 15 ll~iLr~~~sP~~iA~s~AlGvfiGi~P~~ 44 (178)
.-+++++..+..++.+|.++|-+..+.-++
T Consensus 23 t~~~~~~~~~~~Rll~~A~~Gal~~~~~~~ 52 (293)
T PF03419_consen 23 TARLLKRRASRWRLLLGAAIGALYSLLIFF 52 (293)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 347889999999999999999998754444
No 9
>PF11391 DUF2798: Protein of unknown function (DUF2798); InterPro: IPR021529 This family of proteins has no known function.
Probab=65.87 E-value=23 Score=23.71 Aligned_cols=24 Identities=33% Similarity=0.776 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030409 126 LGWLVATPFILTALYLVLLPVFKILVRKF 154 (178)
Q Consensus 126 ~gwlv~ap~~~~~~Y~l~~p~~k~l~~k~ 154 (178)
.+|.++.|... +..|..||+..|+
T Consensus 36 ~a~~vAfp~~l-----~v~P~v~kl~~~l 59 (60)
T PF11391_consen 36 IAWPVAFPISL-----IVAPLVRKLVERL 59 (60)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHh
Confidence 55555555444 3458888887664
No 10
>TIGR02854 spore_II_GA sigma-E processing peptidase SpoIIGA. Members of this protein family are the stage II sporulation protein SpoIIGA. This protein acts as an activating protease for Sigma-E, one of several specialized sigma factors of the sporulation process in Bacillus subtilis and related endospore-forming bacteria.
Probab=51.73 E-value=60 Score=28.34 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=25.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhhhccccchH
Q 030409 15 LLQILRRGAEPNQLAFSTALGITLGLFPICGA 46 (178)
Q Consensus 15 ll~iLr~~~sP~~iA~s~AlGvfiGi~P~~G~ 46 (178)
-.++++...+..++.+|.++|-...+.-+.+.
T Consensus 23 t~~~lk~~~~~~Rll~ga~iGa~~~~~~~~p~ 54 (288)
T TIGR02854 23 TARTLKDKVSQWRLLLAALIGSLYVLFMFTPK 54 (288)
T ss_pred HHHHhhccchHHHHHHHHHHHHHHHHHHHhcc
Confidence 34788999999999999999988776665543
No 11
>TIGR00220 mscL large conductance mechanosensitive channel protein. Protein encodes a channel which opens in response to a membrane stretch force. Probably serves as an osmotic gauge. Carboxy terminus tends to be more divergent across species with a high degree of sequence conservation found at the N-terminus.
Probab=43.23 E-value=55 Score=25.70 Aligned_cols=30 Identities=17% Similarity=0.296 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030409 123 HALLGWLVATPFILTALYLVLLPVFKILVRK 153 (178)
Q Consensus 123 ~Al~gwlv~ap~~~~~~Y~l~~p~~k~l~~k 153 (178)
++++.-++-..+++.+.|++..++- +++++
T Consensus 69 G~fl~avInFlIiA~vvf~~vk~~~-k~~~~ 98 (127)
T TIGR00220 69 GEFIQNIINFLIIAFAIFMIIKAIN-KLRRK 98 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh
Confidence 3445556666666777788887754 55544
No 12
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=43.05 E-value=2.9e+02 Score=25.89 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030409 123 HALLGWLVATPFILTALYLVLLPVFKILVRKFS 155 (178)
Q Consensus 123 ~Al~gwlv~ap~~~~~~Y~l~~p~~k~l~~k~~ 155 (178)
.++.|+++..|+.+=+.|.++.|+.+.+.||-+
T Consensus 101 ~~i~g~iv~IPvF~dv~~viL~Pl~~~la~~~~ 133 (441)
T PF02447_consen 101 LAITGFIVGIPVFFDVGFVILAPLAFSLARKTG 133 (441)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 467899999999999999999999999988855
No 13
>PRK10983 putative inner membrane protein; Provisional
Probab=40.55 E-value=1.2e+02 Score=27.30 Aligned_cols=22 Identities=9% Similarity=0.096 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 030409 135 ILTALYLVLLPVFKILVRKFSS 156 (178)
Q Consensus 135 ~~~~~Y~l~~p~~k~l~~k~~~ 156 (178)
.+.+.|+.++|..+|++||++.
T Consensus 40 ~A~iLa~a~~Pl~~~L~~~~~~ 61 (368)
T PRK10983 40 WAGMVVIATWPLLLKLQKILWG 61 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 4456689999999999999764
No 14
>PF07019 Rab5ip: Rab5-interacting protein (Rab5ip)
Probab=38.12 E-value=65 Score=22.56 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhhhccccchHHHHHHHHHHH
Q 030409 27 QLAFSTALGITLGLFPICGAAVFLCGMAIA 56 (178)
Q Consensus 27 ~iA~s~AlGvfiGi~P~~G~~t~l~~~la~ 56 (178)
|-..|+..|+..|+.|+=|.+=++.-+++.
T Consensus 7 r~~~a~~~Gi~aGILgLtg~~Gf~~f~~~~ 36 (81)
T PF07019_consen 7 RQIIALLAGIAAGILGLTGLYGFIFFFLSS 36 (81)
T ss_pred HHHHHHHHHHHhhhcccccHHHHHHHHHHH
Confidence 344589999999999998888665544443
No 15
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=37.81 E-value=1.9e+02 Score=22.33 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030409 125 LLGWLVATPFILTALYLVLLPVFKILVRKFS 155 (178)
Q Consensus 125 l~gwlv~ap~~~~~~Y~l~~p~~k~l~~k~~ 155 (178)
+.||..+.|..+++.-++...+-+++.+++|
T Consensus 47 ~~g~~a~~pt~~ll~~~~~v~~gg~~l~rlK 77 (121)
T PF11990_consen 47 LTGWWAMIPTGALLGPILGVFVGGKLLARLK 77 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3777777777777766666666666655544
No 16
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=37.21 E-value=90 Score=25.11 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHhhhh-ccccchH
Q 030409 23 AEPNQLAFSTALGITLG-LFPICGA 46 (178)
Q Consensus 23 ~sP~~iA~s~AlGvfiG-i~P~~G~ 46 (178)
.+|.+-|++-++..++| ++|++.+
T Consensus 86 ~~p~~aAl~sgls~~~g~liPllp~ 110 (169)
T TIGR00267 86 RRVYMSGFIDGFSTFMGSFVPVLPF 110 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888 5665443
No 17
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=34.26 E-value=2.5e+02 Score=22.68 Aligned_cols=32 Identities=28% Similarity=0.396 Sum_probs=22.3
Q ss_pred HHHHHHHHhhhhc---ccc-----chHHHHHHHHHHHHHH
Q 030409 28 LAFSTALGITLGL---FPI-----CGAAVFLCGMAIAALR 59 (178)
Q Consensus 28 iA~s~AlGvfiGi---~P~-----~G~~t~l~~~la~~l~ 59 (178)
.|.-+|+++..+. +|+ ++++.+..++.+.+++
T Consensus 7 ~alliAL~vVls~~l~iPi~~~~~~~~~~i~~vlaavllG 46 (160)
T TIGR02359 7 LALLIAIGVVLSQLIRIPVGPTKAAPVQHFVNVIAGVLLG 46 (160)
T ss_pred HHHHHHHHHHHHhheeecCCcccccChhHHHHHHHHHHHc
Confidence 4556666666554 353 4889999999888884
No 18
>PRK13955 mscL large-conductance mechanosensitive channel; Provisional
Probab=32.17 E-value=1e+02 Score=24.37 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030409 125 LLGWLVATPFILTALYLVLLPVFKILVRK 153 (178)
Q Consensus 125 l~gwlv~ap~~~~~~Y~l~~p~~k~l~~k 153 (178)
++.-++-..+++.+.|++..++-| ++++
T Consensus 69 fl~avInFlIiA~vvF~ivk~~nk-~~~~ 96 (130)
T PRK13955 69 FIQTIFDFLIIAASIFMFVKVFNK-LTSK 96 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHh
Confidence 344455556666677777777554 4443
No 19
>COG3030 FxsA Protein affecting phage T7 exclusion by the F plasmid [General function prediction only]
Probab=30.72 E-value=3e+02 Score=22.44 Aligned_cols=83 Identities=20% Similarity=0.183 Sum_probs=40.1
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH-h-hhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 030409 67 VMLANFIATPIELSLVVPFLRFGEALTGGPHFPLNSDALKRVL-T-GKASQEVLLSIAHALLGWLVATPFI--LTALYLV 142 (178)
Q Consensus 67 a~~~~~i~~Pl~~~li~pf~~~G~~l~g~~~~~l~~~~l~~~l-~-~~~~~~~~~~~~~Al~gwlv~ap~~--~~~~Y~l 142 (178)
..+++++.-.+|+.+++....+|-++...+-...-. ..++.. . +.+.+++.+.....+.|-++..|=. -++..++
T Consensus 21 I~Vg~~IG~~~Tl~Lvilt~~~G~~l~r~qG~~~l~-~~q~~~~~G~~P~~~ll~g~~~~vagiLLl~PGFvTd~lGlll 99 (158)
T COG3030 21 IWVGSVIGVGWTLLLVILTSVLGALLLRVQGFGTLL-RAQAALASGEVPGAELLDGLLLIIAGILLLIPGFVTDILGLLL 99 (158)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHccCCcHHHHHHhHHHHHHHHHHHcchHHHHHHHHHH
Confidence 346666776777777666666676666543111111 111111 1 1234566655555555555555421 1233455
Q ss_pred HHHHHHHH
Q 030409 143 LLPVFKIL 150 (178)
Q Consensus 143 ~~p~~k~l 150 (178)
+.|..+++
T Consensus 100 liP~~R~~ 107 (158)
T COG3030 100 LIPPTRKL 107 (158)
T ss_pred hhhhHHHH
Confidence 55555544
No 20
>PRK14417 membrane protein; Provisional
Probab=29.20 E-value=2.1e+02 Score=24.64 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=7.9
Q ss_pred HHHHhhhhccccchHHH
Q 030409 32 TALGITLGLFPICGAAV 48 (178)
Q Consensus 32 ~AlGvfiGi~P~~G~~t 48 (178)
.++|+++.+.|..++-.
T Consensus 110 t~~Gvll~l~p~~~li~ 126 (232)
T PRK14417 110 TSLGVALVMAPVPALIA 126 (232)
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 34455555555444333
No 21
>PF07543 PGA2: Protein trafficking PGA2; InterPro: IPR011431 A Saccharomyces cerevisiae (Baker's yeast) member of this family (PGA2, P53903 from SWISSPROT) is a single pass membrane protein which has been implicated in protein trafficking [, ].
Probab=27.53 E-value=60 Score=25.77 Aligned_cols=19 Identities=37% Similarity=0.665 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030409 135 ILTALYLVLLPVFKILVRK 153 (178)
Q Consensus 135 ~~~~~Y~l~~p~~k~l~~k 153 (178)
+.+..|++++||++.+..|
T Consensus 22 iIVggYiLlRPY~~kl~~k 40 (140)
T PF07543_consen 22 IIVGGYILLRPYFRKLAAK 40 (140)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 4456799999998777433
No 22
>PRK13954 mscL large-conductance mechanosensitive channel; Provisional
Probab=25.48 E-value=1.3e+02 Score=23.40 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030409 124 ALLGWLVATPFILTALYLVLLPVFKILVRK 153 (178)
Q Consensus 124 Al~gwlv~ap~~~~~~Y~l~~p~~k~l~~k 153 (178)
+++.-++-..+++.+.|++..++- ++++|
T Consensus 65 ~fl~avinFlIiA~vvF~~vk~~~-k~~~~ 93 (119)
T PRK13954 65 LFIQSVIDFIIIAFALFIFVKIAN-TLMKK 93 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhhc
Confidence 334445556666667787777654 45444
No 23
>COG3333 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.47 E-value=6.2e+02 Score=24.41 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=37.6
Q ss_pred HHHHHHhcCCCHHHHHH---HHHHHhhhhccccchHHHHHHHHHHHHHHhccCHHHH
Q 030409 14 PLLQILRRGAEPNQLAF---STALGITLGLFPICGAAVFLCGMAIAALRSRCHAPSV 67 (178)
Q Consensus 14 ~ll~iLr~~~sP~~iA~---s~AlGvfiGi~P~~G~~t~l~~~la~~l~~RlN~~aa 67 (178)
-+++=+..-.||+++.. ++-+|..+|..|=+|...-+++.+=.-+ .++...+
T Consensus 6 ~l~~Gf~~a~tp~nLl~~liG~~lGt~vGvLPGLg~~~~vALLLPiTf--~L~p~~a 60 (504)
T COG3333 6 LLLQGFAVALTPTNLLYALIGVLLGTLVGVLPGLGPINGVALLLPITF--GLDPASA 60 (504)
T ss_pred HHHHHHHHHcChHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhhhhc--CCChHHH
Confidence 34444555678888764 6789999999998888887777766655 6666554
No 24
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.33 E-value=79 Score=24.79 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=19.5
Q ss_pred HHHHHHHHhhhhccccchHHHHHH
Q 030409 28 LAFSTALGITLGLFPICGAAVFLC 51 (178)
Q Consensus 28 iA~s~AlGvfiGi~P~~G~~t~l~ 51 (178)
=-.++.+|+.-|+.|+-|+--++|
T Consensus 50 QVi~l~lGviwGi~pL~G~l~iv~ 73 (129)
T KOG3415|consen 50 QVIGLILGVIWGIIPLVGFLGIVL 73 (129)
T ss_pred HHHHHHHHHHHhhchhhhHHHHHH
Confidence 357899999999999999865554
No 25
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]
Probab=25.11 E-value=4.1e+02 Score=23.09 Aligned_cols=45 Identities=18% Similarity=0.073 Sum_probs=28.5
Q ss_pred CCHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030409 100 LNSDALKRVLTG-KASQEVLLSIAHALLGWLVATPFILTALYLVLL 144 (178)
Q Consensus 100 l~~~~l~~~l~~-~~~~~~~~~~~~Al~gwlv~ap~~~~~~Y~l~~ 144 (178)
+|.+-.++++++ +..+.++.++.-|++..+++..+.....|.+.+
T Consensus 49 fSl~WY~~l~~~~~~~~a~~~Sl~IA~~s~~~s~~lg~~aA~al~r 94 (267)
T COG1177 49 FSLKWYGALFSDPRLLSALWNSLLIALLSALLATLLGTLAALALAR 94 (267)
T ss_pred CCHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788877788863 345666777776655555555555555554443
No 26
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=24.90 E-value=1.7e+02 Score=23.50 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030409 129 LVATPFILTALYLVLLPVFKILVRKFS 155 (178)
Q Consensus 129 lv~ap~~~~~~Y~l~~p~~k~l~~k~~ 155 (178)
++++++...++|.+...++|+...|++
T Consensus 118 li~~~~~Y~ls~~lI~~Yr~~~~~~~~ 144 (154)
T TIGR03546 118 LILLPPAFAISKVIIAKYRKRIVAWVN 144 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666777777777777777766554
No 27
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=24.72 E-value=5.9e+02 Score=23.89 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCCCCCCCc
Q 030409 144 LPVFKILVRKFSSAALSSKK 163 (178)
Q Consensus 144 ~p~~k~l~~k~~~~~~s~~~ 163 (178)
-|+-|++++|.+.+|...+.
T Consensus 177 gpva~~li~k~~l~~~~~~~ 196 (404)
T COG0786 177 GPVARWLIKKNKLKPDPTKD 196 (404)
T ss_pred cHHHHHHHHhcCCCCCCCCC
Confidence 47888999999888874444
No 28
>KOG4619 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.27 E-value=36 Score=25.51 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhhhccccchH
Q 030409 27 QLAFSTALGITLGLFPICGA 46 (178)
Q Consensus 27 ~iA~s~AlGvfiGi~P~~G~ 46 (178)
..|.++-+|..+|.||++.|
T Consensus 73 ~ka~gltigcilgmfpliff 92 (105)
T KOG4619|consen 73 AKAAGLTIGCILGMFPLIFF 92 (105)
T ss_pred HHhhchhhhhhhhccceeee
Confidence 35778889999999998754
No 29
>cd02437 CCC1_like_1 CCC1-related protein family. CCC1_like_1: This is a protein family closely related to CCC1, a family of proteins involved in iron and manganese transport. Yeast CCC1 is a vacuole transmembrane protein responsible for the iron and manganese accumulation in vacuole.
Probab=23.58 E-value=2.9e+02 Score=22.04 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=18.3
Q ss_pred cCCCHHHHHHHHHHHhhhh-ccccchH
Q 030409 21 RGAEPNQLAFSTALGITLG-LFPICGA 46 (178)
Q Consensus 21 ~~~sP~~iA~s~AlGvfiG-i~P~~G~ 46 (178)
...+|.+-|+.-+++.++| +.|+..+
T Consensus 89 ~~~~~~~~al~sgls~~~G~llPLlp~ 115 (175)
T cd02437 89 IRKADLPSGLIQGISTTLGGLLPLLPF 115 (175)
T ss_pred cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888888877777 6666554
No 30
>COG0344 Predicted membrane protein [Function unknown]
Probab=23.48 E-value=2.2e+02 Score=24.00 Aligned_cols=47 Identities=26% Similarity=0.350 Sum_probs=30.1
Q ss_pred HHHHHHHhhhhccccchHHHHHHHHHHHHHHhccCHHHHHHHHHhhhh
Q 030409 29 AFSTALGITLGLFPICGAAVFLCGMAIAALRSRCHAPSVMLANFIATP 76 (178)
Q Consensus 29 A~s~AlGvfiGi~P~~G~~t~l~~~la~~l~~RlN~~aa~~~~~i~~P 76 (178)
+.+-+.|+.+++.|..++.+...-++...+ .|....+++++...+.|
T Consensus 109 gVAT~~Gvll~l~p~~~l~~~~~~l~i~~l-~ky~Slasl~~a~~~~~ 155 (200)
T COG0344 109 GVATTLGVLLALAPWLALIGAATWLLIALL-TKYSSLASLVAAILAAP 155 (200)
T ss_pred chhhcchHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHH
Confidence 345568899999999888888775544332 25555555555545555
No 31
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=23.27 E-value=1.9e+02 Score=21.72 Aligned_cols=38 Identities=29% Similarity=0.461 Sum_probs=25.0
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 030409 115 QEVLLSIA-HALLGWLVATPFILTALYLVLLPVFKILVRKFSSAA 158 (178)
Q Consensus 115 ~~~~~~~~-~Al~gwlv~ap~~~~~~Y~l~~p~~k~l~~k~~~~~ 158 (178)
+.+|..+. .+.+||-+++|++..+. +=..+-++|++.|
T Consensus 36 ~~~~~~l~~~g~IG~~~v~pil~G~~------lG~WLD~~~~t~~ 74 (100)
T TIGR02230 36 RSIWEGLGMFGLIGWSVAIPTLLGVA------VGIWLDRHYPSPF 74 (100)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhcCCCc
Confidence 44565555 66799999999776543 3344677777655
No 32
>PF01741 MscL: Large-conductance mechanosensitive channel, MscL; InterPro: IPR001185 Mechanosensitive ion channels (MscL) play a critical role in transducing physical stresses at the cell membrane into an electrochemical response. MscL is a protein which forms a channel organised as a homopentamer, with each subunit containing two transmembrane regions []. Prokaryotes harbor a large-conductance mechanosensitive channel (gene mscL) that opens in response to stretch forces in the membrane lipid bilayer and may participate in the regulation of osmotic pressure changes within the cell [].; GO: 0005216 ion channel activity, 0006810 transport, 0016021 integral to membrane; PDB: 3HZQ_A 2OAR_A.
Probab=22.98 E-value=30 Score=27.04 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 030409 126 LGWLVATPFILTALYLVLLPVFKILVRKFSSA 157 (178)
Q Consensus 126 ~gwlv~ap~~~~~~Y~l~~p~~k~l~~k~~~~ 157 (178)
+..++-.-+++.+.|++..++. +++||...+
T Consensus 74 l~a~I~FlIiA~vvFlivk~~n-k~~~~~~~~ 104 (128)
T PF01741_consen 74 LNALINFLIIAFVVFLIVKPIN-KLKKKEEKE 104 (128)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHH-HCHHTT-S-
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhhhhcc
Confidence 3445555555666677777664 445554443
No 33
>COG4129 Predicted membrane protein [Function unknown]
Probab=22.97 E-value=2.8e+02 Score=24.96 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=16.5
Q ss_pred HHHHHhhhhcccc-chHHHHHHHHHHHHH
Q 030409 31 STALGITLGLFPI-CGAAVFLCGMAIAAL 58 (178)
Q Consensus 31 s~AlGvfiGi~P~-~G~~t~l~~~la~~l 58 (178)
|+.+..+.|.+|+ +|+..++++.++..+
T Consensus 71 a~l~~~l~g~~~~~~~v~~~i~i~~~~~~ 99 (332)
T COG4129 71 AVLFFLLFGQNPIAFGVVLLIIIPLLVLL 99 (332)
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHHHHHH
Confidence 3334444556665 467777777776655
No 34
>PRK13952 mscL large-conductance mechanosensitive channel; Provisional
Probab=22.80 E-value=1.5e+02 Score=23.72 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030409 126 LGWLVATPFILTALYLVLLPVFKILVRK 153 (178)
Q Consensus 126 ~gwlv~ap~~~~~~Y~l~~p~~k~l~~k 153 (178)
+.-++-..+++.+.|++..++- ++++|
T Consensus 89 l~avInFlIiA~vvf~ivk~~n-k~~~~ 115 (142)
T PRK13952 89 ITVLINFLILAFIIFLMVKAIN-RLRRK 115 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhc
Confidence 4445555666667788777764 46555
No 35
>TIGR03226 PhnU 2-aminoethylphosphonate ABC transporter, permease protein. This ABC transporter permease (membrane-spanning) component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238).
Probab=22.48 E-value=5.1e+02 Score=22.34 Aligned_cols=44 Identities=7% Similarity=-0.022 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030409 99 PLNSDALKRVLTG-KASQEVLLSIAHALLGWLVATPFILTALYLV 142 (178)
Q Consensus 99 ~l~~~~l~~~l~~-~~~~~~~~~~~~Al~gwlv~ap~~~~~~Y~l 142 (178)
..+.++..+.+++ ...+.++.++..++.+.+++.++...+.|.+
T Consensus 75 ~~~l~ny~~~~~~~~~~~~l~~Tl~ia~~~~~l~~vig~~la~~l 119 (312)
T TIGR03226 75 EIGLAAFRHFFASHDFRDALGNTLQIAFAAAAGALLLGSALAAIL 119 (312)
T ss_pred CccHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778787754 3456666777766666666555555555544
No 36
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=22.11 E-value=1.4e+02 Score=25.86 Aligned_cols=32 Identities=19% Similarity=-0.046 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030409 117 VLLSIAHALLGWLVATPFILTALYLVLLPVFK 148 (178)
Q Consensus 117 ~~~~~~~Al~gwlv~ap~~~~~~Y~l~~p~~k 148 (178)
+|..++++++||++..|+-+++.+++--.+-+
T Consensus 3 ~~gki~g~~~G~~~~g~~Ga~~G~~~Gh~~d~ 34 (267)
T PRK09430 3 YWGKILGFAFGFLFGGFFGALLGLLIGHMFDK 34 (267)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhHHhh
Confidence 46677889999999999988888877765544
No 37
>TIGR03255 PhnV 2-aminoethylphosphonate ABC transport system, membrane component PhnV. This membrane component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=21.78 E-value=4.8e+02 Score=21.85 Aligned_cols=45 Identities=16% Similarity=0.073 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030409 99 PLNSDALKRVLTGKASQEVLLSIAHALLGWLVATPFILTALYLVL 143 (178)
Q Consensus 99 ~l~~~~l~~~l~~~~~~~~~~~~~~Al~gwlv~ap~~~~~~Y~l~ 143 (178)
+++.+.+.+.+++...+.++.++..+..+.+++..+...+.|.+.
T Consensus 52 ~~tl~ny~~~l~~~~~~al~nSl~~s~~~~~i~~~lg~~~A~~l~ 96 (272)
T TIGR03255 52 GFSLNHFVEALGGAAFDALAASLEIGFCAAAFALACGLGAALALA 96 (272)
T ss_pred cCCHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466777878776555577778887777777777776666667554
No 38
>PRK13953 mscL large-conductance mechanosensitive channel; Provisional
Probab=21.53 E-value=2.1e+02 Score=22.38 Aligned_cols=29 Identities=14% Similarity=0.212 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030409 126 LGWLVATPFILTALYLVLLPVFKILVRKFS 155 (178)
Q Consensus 126 ~gwlv~ap~~~~~~Y~l~~p~~k~l~~k~~ 155 (178)
+.-++-..+++.+.|++..++- ++++|-+
T Consensus 70 l~avinFlIia~vvF~~vk~~n-k~~~~~~ 98 (125)
T PRK13953 70 IQSIVDFLIIAFAIFIFVKVLT-SFIKKKE 98 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhhc
Confidence 4445555556667777777754 4555433
No 39
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=21.17 E-value=1.5e+02 Score=21.53 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcc
Q 030409 141 LVLLPVFKILVRKFSSAALSSKKE 164 (178)
Q Consensus 141 ~l~~p~~k~l~~k~~~~~~s~~~~ 164 (178)
++.+.|+|.+..-+++-|+|.=+.
T Consensus 43 ~liVRCfrIllDPYssmPtStW~d 66 (81)
T PF11057_consen 43 LLIVRCFRILLDPYSSMPTSTWTD 66 (81)
T ss_pred HHHHHHHHHHcChhhcCCcchhhh
Confidence 445689999999999999876543
No 40
>KOG2493 consensus Na+/Pi symporter [Inorganic ion transport and metabolism]
Probab=20.97 E-value=2.1e+02 Score=27.60 Aligned_cols=38 Identities=8% Similarity=0.078 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 030409 121 IAHALLGWLVATPFILTALYLVLLPVFKILVRKFSSAA 158 (178)
Q Consensus 121 ~~~Al~gwlv~ap~~~~~~Y~l~~p~~k~l~~k~~~~~ 158 (178)
.++..+-+..++.+...+.|+.+.|..+|-..+.++.+
T Consensus 231 ~~~~~~is~~~g~i~a~i~~f~v~p~~~~ki~~~k~~~ 268 (512)
T KOG2493|consen 231 LWATILISVGLGVIAAFIVYFFVRPFMRRKINRGKETD 268 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcccccccc
Confidence 33455666777777788888888888666554444333
No 41
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=20.11 E-value=7e+02 Score=23.09 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=15.3
Q ss_pred cCCCHHHHHHHHHHHhhhhcc--ccch
Q 030409 21 RGAEPNQLAFSTALGITLGLF--PICG 45 (178)
Q Consensus 21 ~~~sP~~iA~s~AlGvfiGi~--P~~G 45 (178)
.|.|+.++..-.+.|.+..+. |++|
T Consensus 38 ~GLs~~~iG~i~s~~~~~~l~~qp~~G 64 (412)
T PF01306_consen 38 AGLSGTEIGIIFSAGSLFALLAQPVYG 64 (412)
T ss_dssp H---HHHHHHHHHHHHHHHHHTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHH
Confidence 488999988888888665554 5544
Done!