Query 030409
Match_columns 178
No_of_seqs 131 out of 169
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 21:37:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030409.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030409hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oar_A Large-conductance mecha 29.4 37 0.0013 27.0 3.0 28 126-153 96-123 (174)
2 2l3i_A Aoxki4A, antimicrobial 18.1 97 0.0033 17.4 2.4 17 7-23 13-29 (30)
3 2zt9_E Cytochrome B6-F complex 13.2 1E+02 0.0034 17.8 1.7 13 28-40 13-25 (31)
4 3h2z_A Mannitol-1-phosphate 5- 11.7 1.2E+02 0.0041 26.3 2.5 29 9-37 305-333 (382)
5 1vf5_E Protein PET L; photosyn 11.7 1.2E+02 0.0042 17.6 1.7 13 28-40 14-26 (32)
6 1q90_G Cytochrome B6F complex 11.6 1.8E+02 0.006 17.4 2.4 22 32-57 5-26 (37)
7 3s64_A AC-SLP-1, saposin-like 10.5 1.3E+02 0.0043 21.1 1.8 23 8-30 60-82 (87)
8 1lj8_A Mannitol dehydrogenase; 10.3 2E+02 0.007 25.8 3.6 31 7-37 382-412 (493)
9 2lx0_A Membrane fusion protein 10.0 2.8E+02 0.0095 15.6 3.0 8 145-152 24-31 (32)
10 1lyp_A CAP18; lipopolysacchari 9.9 2.3E+02 0.0078 16.0 2.4 14 5-18 7-20 (32)
No 1
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=29.43 E-value=37 Score=26.96 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030409 126 LGWLVATPFILTALYLVLLPVFKILVRK 153 (178)
Q Consensus 126 ~gwlv~ap~~~~~~Y~l~~p~~k~l~~k 153 (178)
+.-++-..+++.++|++.+-...++++|
T Consensus 96 i~avInFlIIA~vIYFliVk~iNklk~~ 123 (174)
T 2oar_A 96 LSAAINFFLIAFAVYFLVVLPYNTLRKK 123 (174)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345666667777777766666777665
No 2
>2l3i_A Aoxki4A, antimicrobial peptide in spider venom; antimicrobial protein; NMR {Araneae}
Probab=18.06 E-value=97 Score=17.36 Aligned_cols=17 Identities=41% Similarity=0.798 Sum_probs=14.4
Q ss_pred HHHhhHHHHHHHHhcCC
Q 030409 7 FNKRIVEPLLQILRRGA 23 (178)
Q Consensus 7 ~~~~i~~~ll~iLr~~~ 23 (178)
|.+|+...++..||+.+
T Consensus 13 fkqrvlkrllamlrqha 29 (30)
T 2l3i_A 13 FKQRVLKRLLAMLRQHA 29 (30)
T ss_dssp HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 77889999999999864
No 3
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=13.20 E-value=1e+02 Score=17.80 Aligned_cols=13 Identities=38% Similarity=0.544 Sum_probs=7.7
Q ss_pred HHHHHHHHhhhhc
Q 030409 28 LAFSTALGITLGL 40 (178)
Q Consensus 28 iA~s~AlGvfiGi 40 (178)
.+.++|+|.+.|+
T Consensus 13 ~~~~iA~GL~fGL 25 (31)
T 2zt9_E 13 LFTGIAAGLLFGL 25 (31)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3556666666653
No 4
>3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure initiative, structural genomics, midwest for structural genomics (MCSG); 1.90A {Shigella flexneri 2a str}
Probab=11.68 E-value=1.2e+02 Score=26.34 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=24.0
Q ss_pred HhhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 030409 9 KRIVEPLLQILRRGAEPNQLAFSTALGIT 37 (178)
Q Consensus 9 ~~i~~~ll~iLr~~~sP~~iA~s~AlGvf 37 (178)
.|+..|++..++.|.+|..+++++|..+.
T Consensus 305 ~R~~~~~~~~~~~g~~~~~l~~~iAa~~~ 333 (382)
T 3h2z_A 305 DRLIKPLLGTLEYSLPHKNLIQGIAGAMH 333 (382)
T ss_dssp STTHHHHHHHHHHTCCCHHHHHHHHHHHT
T ss_pred ceeHHHHHHHHHcCCChhHHHHHHHHHHH
Confidence 57888899889999999888888887763
No 5
>1vf5_E Protein PET L; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.24.1 PDB: 2d2c_E* 2e74_E* 2e75_E* 2e76_E*
Probab=11.66 E-value=1.2e+02 Score=17.57 Aligned_cols=13 Identities=38% Similarity=0.718 Sum_probs=8.4
Q ss_pred HHHHHHHHhhhhc
Q 030409 28 LAFSTALGITLGL 40 (178)
Q Consensus 28 iA~s~AlGvfiGi 40 (178)
...++|+|.+.|+
T Consensus 14 ~~f~iA~GL~fGl 26 (32)
T 1vf5_E 14 LFFGIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHH
Confidence 4566777777664
No 6
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=11.60 E-value=1.8e+02 Score=17.42 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=13.7
Q ss_pred HHHHhhhhccccchHHHHHHHHHHHH
Q 030409 32 TALGITLGLFPICGAAVFLCGMAIAA 57 (178)
Q Consensus 32 ~AlGvfiGi~P~~G~~t~l~~~la~~ 57 (178)
+-.|+.+|+.|+ |+..++++..
T Consensus 5 lL~GIVlGlipv----tlaGLfv~Ay 26 (37)
T 1q90_G 5 LLCGIVLGLVPV----TIAGLFVTAY 26 (37)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHH
T ss_pred hhhhHHHhhHHH----HHHHHHHHHH
Confidence 346888888885 5555555443
No 7
>3s64_A AC-SLP-1, saposin-like protein 1; lipid-binding, lipid binding protein; HET: CIT EPE; 2.30A {Ancylostoma caninum}
Probab=10.50 E-value=1.3e+02 Score=21.08 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=18.8
Q ss_pred HHhhHHHHHHHHhcCCCHHHHHH
Q 030409 8 NKRIVEPLLQILRRGAEPNQLAF 30 (178)
Q Consensus 8 ~~~i~~~ll~iLr~~~sP~~iA~ 30 (178)
-++-.+++...|++|.+|+.+=.
T Consensus 60 v~~~~d~II~eLe~g~~P~~VC~ 82 (87)
T 3s64_A 60 AKIEMGAIKTLLENGSAPEEICT 82 (87)
T ss_dssp HHHHHHHHHHHHHTTCCTTTHHH
T ss_pred HHHhHHHHHHHHHcCCCHHHHHH
Confidence 35677899999999999987643
No 8
>1lj8_A Mannitol dehydrogenase; oxidoreductase, NAD, long-chain dehydrogenase; HET: NAD; 1.70A {Pseudomonas fluorescens} SCOP: a.100.1.9 c.2.1.6 PDB: 1m2w_A*
Probab=10.29 E-value=2e+02 Score=25.80 Aligned_cols=31 Identities=23% Similarity=0.259 Sum_probs=25.1
Q ss_pred HHHhhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 030409 7 FNKRIVEPLLQILRRGAEPNQLAFSTALGIT 37 (178)
Q Consensus 7 ~~~~i~~~ll~iLr~~~sP~~iA~s~AlGvf 37 (178)
+..|+..+++..++.|.+|..+++++|..+-
T Consensus 382 l~~R~l~~i~~~~~~g~~~~~l~~~iAawl~ 412 (493)
T 1lj8_A 382 FPKFTVPTINRLIADGRETERAALVVAAWAL 412 (493)
T ss_dssp HHHHTHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 3448888898899999999999988887654
No 9
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=10.01 E-value=2.8e+02 Score=15.64 Aligned_cols=8 Identities=38% Similarity=0.480 Sum_probs=3.8
Q ss_pred HHHHHHHH
Q 030409 145 PVFKILVR 152 (178)
Q Consensus 145 p~~k~l~~ 152 (178)
+++|-+++
T Consensus 24 wlfkylqk 31 (32)
T 2lx0_A 24 WLFKYLQK 31 (32)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhc
Confidence 44555543
No 10
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=9.93 E-value=2.3e+02 Score=16.02 Aligned_cols=14 Identities=36% Similarity=0.425 Sum_probs=10.8
Q ss_pred HHHHHhhHHHHHHH
Q 030409 5 LWFNKRIVEPLLQI 18 (178)
Q Consensus 5 ~~~~~~i~~~ll~i 18 (178)
+=||+++.+.+.++
T Consensus 7 rkfrnkikeklkki 20 (32)
T 1lyp_A 7 RKFRNKIKEKLKKI 20 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45888888888775
Done!