Query 030409
Match_columns 178
No_of_seqs 131 out of 169
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 21:37:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030409.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030409hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lj8a3 a.100.1.9 (A:287-492) 25.0 26 0.0019 25.9 3.3 30 7-36 96-125 (206)
2 d2oara1 f.16.1.1 (A:10-118) Ga 20.6 38 0.0027 22.9 3.2 28 126-153 64-91 (109)
3 d1q90g_ f.23.26.1 (G:) PetG su 18.2 46 0.0033 17.6 2.4 21 32-56 5-25 (30)
4 d1k78a1 a.4.1.5 (A:19-81) Pax- 10.0 1E+02 0.0074 18.6 2.8 21 12-32 20-40 (63)
5 d1lqaa_ c.1.7.1 (A:) Tas prote 8.1 1E+02 0.0073 23.1 2.7 36 14-49 276-312 (346)
6 d1s1pa_ c.1.7.1 (A:) Prostagla 7.4 51 0.0038 24.7 0.5 27 20-48 242-268 (315)
7 d2cwqa1 a.152.1.4 (A:1-117) Hy 6.7 1.7E+02 0.013 19.0 3.1 30 13-42 76-105 (117)
8 d1nkla_ a.64.1.1 (A:) NK-lysin 6.6 2.4E+02 0.017 16.3 3.5 24 6-29 47-70 (78)
9 d2qale1 d.14.1.1 (E:78-158) Ri 6.4 1.9E+02 0.014 18.1 3.0 21 10-30 57-77 (81)
10 d1vkea_ a.152.1.2 (A:) Hypothe 6.2 3.2E+02 0.023 17.6 4.3 33 11-43 60-92 (118)
No 1
>d1lj8a3 a.100.1.9 (A:287-492) Mannitol 2-dehydrogenase {Pseudomonas fluorescens [TaxId: 294]}
Probab=24.99 E-value=26 Score=25.89 Aligned_cols=30 Identities=23% Similarity=0.281 Sum_probs=25.5
Q ss_pred HHHhhHHHHHHHHhcCCCHHHHHHHHHHHh
Q 030409 7 FNKRIVEPLLQILRRGAEPNQLAFSTALGI 36 (178)
Q Consensus 7 ~~~~i~~~ll~iLr~~~sP~~iA~s~AlGv 36 (178)
+..|+..++.+.+++|.+|..+|+++|.-+
T Consensus 96 ~~~r~lp~l~~~~~~g~~~~~la~~iAawl 125 (206)
T d1lj8a3 96 FPKFTVPTINRLIADGRETERAALVVAAWA 125 (206)
T ss_dssp HHHHTHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred hhhhccHHHHHHHHcCCCccHHHHHHHHHH
Confidence 467889999999999999999998888644
No 2
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=20.64 E-value=38 Score=22.91 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030409 126 LGWLVATPFILTALYLVLLPVFKILVRK 153 (178)
Q Consensus 126 ~gwlv~ap~~~~~~Y~l~~p~~k~l~~k 153 (178)
+.-++-..+++.+.|++..-...+++||
T Consensus 64 i~a~InFlIiA~vv~F~vvk~~n~~~~k 91 (109)
T d2oara1 64 LSAAINFFLIAFAVYFLVVLPYNTLRKK 91 (109)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3334555556666666554445666665
No 3
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=18.22 E-value=46 Score=17.59 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=13.4
Q ss_pred HHHHhhhhccccchHHHHHHHHHHH
Q 030409 32 TALGITLGLFPICGAAVFLCGMAIA 56 (178)
Q Consensus 32 ~AlGvfiGi~P~~G~~t~l~~~la~ 56 (178)
+-.|+.+|..|+ |+..++++.
T Consensus 5 ll~GivlGlipi----Tl~Glfv~A 25 (30)
T d1q90g_ 5 LLCGIVLGLVPV----TIAGLFVTA 25 (30)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHhHHHhhHHH----HHHHHHHHH
Confidence 346888888886 555555544
No 4
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.97 E-value=1e+02 Score=18.64 Aligned_cols=21 Identities=10% Similarity=0.354 Sum_probs=15.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHH
Q 030409 12 VEPLLQILRRGAEPNQLAFST 32 (178)
Q Consensus 12 ~~~ll~iLr~~~sP~~iA~s~ 32 (178)
++.+.+....|.|+.++|.=+
T Consensus 20 R~Riv~~~~~G~s~r~aA~rf 40 (63)
T d1k78a1 20 RQRIVELAHQGVRPCDISRQL 40 (63)
T ss_dssp HHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHh
Confidence 444556667999999998643
No 5
>d1lqaa_ c.1.7.1 (A:) Tas protein {Escherichia coli [TaxId: 562]}
Probab=8.13 E-value=1e+02 Score=23.13 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=26.1
Q ss_pred HHHHHH-hcCCCHHHHHHHHHHHhhhhccccchHHHH
Q 030409 14 PLLQIL-RRGAEPNQLAFSTALGITLGLFPICGAAVF 49 (178)
Q Consensus 14 ~ll~iL-r~~~sP~~iA~s~AlGvfiGi~P~~G~~t~ 49 (178)
.+.++. +.|.||.|+|+..++.--...+|++|..+.
T Consensus 276 ~~~~~a~~~g~s~aq~al~~~l~~~~v~~vl~G~~~~ 312 (346)
T d1lqaa_ 276 AYVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTM 312 (346)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTCTTEEEEEECCSSH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHCCCCeEEEECCCCH
Confidence 344443 458999999999988776667788876654
No 6
>d1s1pa_ c.1.7.1 (A:) Prostaglandin d2 11-ketoreductase (akr1c3) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.37 E-value=51 Score=24.69 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=20.2
Q ss_pred hcCCCHHHHHHHHHHHhhhhccccchHHH
Q 030409 20 RRGAEPNQLAFSTALGITLGLFPICGAAV 48 (178)
Q Consensus 20 r~~~sP~~iA~s~AlGvfiGi~P~~G~~t 48 (178)
+.|.||.|+|++.++. -|..|+.|.++
T Consensus 242 ~~g~s~aq~Alaw~l~--~~~~vI~G~~~ 268 (315)
T d1s1pa_ 242 KHKRTPALIALRYQLQ--RGVVVLAKSYN 268 (315)
T ss_dssp HHTSCHHHHHHHHHHH--TTCEEEEECCS
T ss_pred HhCCCHHHHHHHHHHh--CCCEEEECCCC
Confidence 4588999999888875 36677777654
No 7
>d2cwqa1 a.152.1.4 (A:1-117) Hypothetical protein TTHA0727 {Thermus thermophilus [TaxId: 274]}
Probab=6.72 E-value=1.7e+02 Score=18.98 Aligned_cols=30 Identities=10% Similarity=-0.056 Sum_probs=17.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhhccc
Q 030409 13 EPLLQILRRGAEPNQLAFSTALGITLGLFP 42 (178)
Q Consensus 13 ~~ll~iLr~~~sP~~iA~s~AlGvfiGi~P 42 (178)
......++.|.|+.+|.=.+.+...++-.|
T Consensus 76 ~h~~~A~~~G~t~eEI~Eal~ia~~~~g~~ 105 (117)
T d2cwqa1 76 AMAHRAKRLGLSKEALLETLKIARQAQANA 105 (117)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhccch
Confidence 344455566666666666666555555444
No 8
>d1nkla_ a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [TaxId: 9823]}
Probab=6.57 E-value=2.4e+02 Score=16.29 Aligned_cols=24 Identities=8% Similarity=0.190 Sum_probs=18.3
Q ss_pred HHHHhhHHHHHHHHhcCCCHHHHH
Q 030409 6 WFNKRIVEPLLQILRRGAEPNQLA 29 (178)
Q Consensus 6 ~~~~~i~~~ll~iLr~~~sP~~iA 29 (178)
.+-++....+.+.+.++.+|.++=
T Consensus 47 ~~v~~y~~~ii~~l~~~~~p~~iC 70 (78)
T d1nkla_ 47 KIMRSFLRRISWDILTGKKPQAIC 70 (78)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHH
Confidence 345566677888899999999863
No 9
>d2qale1 d.14.1.1 (E:78-158) Ribosomal protein S5, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=6.39 E-value=1.9e+02 Score=18.08 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=18.0
Q ss_pred hhHHHHHHHHhcCCCHHHHHH
Q 030409 10 RIVEPLLQILRRGAEPNQLAF 30 (178)
Q Consensus 10 ~i~~~ll~iLr~~~sP~~iA~ 30 (178)
++.+...+.|++-.||+++|.
T Consensus 57 N~vkAt~~aL~~~~t~~~iA~ 77 (81)
T d2qale1 57 NVVRATIDGLENMNSPEMVAA 77 (81)
T ss_dssp HHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHH
Confidence 567788899999999999985
No 10
>d1vkea_ a.152.1.2 (A:) Hypothetical protein TM1620 {Thermotoga maritima [TaxId: 2336]}
Probab=6.17 E-value=3.2e+02 Score=17.62 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=27.6
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHhhhhcccc
Q 030409 11 IVEPLLQILRRGAEPNQLAFSTALGITLGLFPI 43 (178)
Q Consensus 11 i~~~ll~iLr~~~sP~~iA~s~AlGvfiGi~P~ 43 (178)
+.......++.|.|+.+|.=++.+...+|-.|-
T Consensus 60 ~~~H~~~A~~~G~t~eEI~Eal~va~~~~g~~a 92 (118)
T d1vkea_ 60 IRYHLVRCVQEGASDEEIFEALDIALVVGGSIV 92 (118)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcchhH
Confidence 445566788899999999999999999998884
Done!