Query 030410
Match_columns 178
No_of_seqs 125 out of 1143
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 21:39:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030410.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030410hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pys_P 30S ribosomal protein S 100.0 4.7E-43 1.6E-47 258.3 4.5 82 2-85 1-82 (83)
2 3r8n_P 30S ribosomal protein S 100.0 5.9E-42 2E-46 252.0 7.7 79 2-81 1-79 (82)
3 3bn0_A 30S ribosomal protein S 100.0 7.5E-43 2.6E-47 269.5 2.5 83 1-87 1-83 (112)
4 3bbn_P Ribosomal protein S16; 100.0 3.1E-42 1.1E-46 256.4 -4.3 82 2-88 1-82 (88)
5 1vbv_A Hypothetical protein B0 38.9 18 0.00061 26.7 2.4 13 12-24 46-58 (105)
6 3dxo_A Uncharacterized snoal-l 29.2 23 0.00077 24.9 1.6 27 18-44 93-120 (121)
7 1vp8_A Hypothetical protein AF 20.8 1.5E+02 0.005 24.7 5.1 62 55-150 110-189 (201)
8 1xrx_A SEQA protein; protein f 16.8 80 0.0027 21.1 2.2 33 50-82 2-38 (50)
9 3evi_A Phosducin-like protein 15.0 1E+02 0.0034 21.9 2.5 36 29-70 81-117 (118)
10 1jdp_A NPR-C, atrial natriuret 14.8 2.5E+02 0.0085 22.9 5.2 51 5-64 361-411 (441)
No 1
>3pys_P 30S ribosomal protein S16; ribosome, IGR, IRES, PSIV, CRPV; 3.40A {Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P 1vox_P 1voz_P 1pns_P 3ms0_P 3mr8_P 3pyq_P 3pyn_P 3pyu_P 3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P 1i94_P* ...
Probab=100.00 E-value=4.7e-43 Score=258.31 Aligned_cols=82 Identities=46% Similarity=0.925 Sum_probs=78.0
Q ss_pred ceEEeeccCCCCCCCeeEEEEeecCCCCCCcceeeeeeecCCCCCCCCceEEEeHHHHHHHHHCCCccCHHHHHHHHHcC
Q 030410 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAG 81 (178)
Q Consensus 2 ~VkIRLaR~G~KkrPfYRIVVaDsRspRDGK~IE~LG~YdPl~~~~~~K~i~Ln~eRIkyWL~~GAQPTdtV~~LL~kaG 81 (178)
||||||+|+|+|++|||||||+|||++|||+|||+||||||+++. ++.+.||+||++|||++||||||||++||+++|
T Consensus 1 MvkIRL~R~G~kkrPfYrIVvadsr~~RdGr~IE~lG~YnP~~~~--~~~i~l~~eri~~Wl~~GAqptdtV~~ll~~~g 78 (83)
T 3pys_P 1 MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTT--PDWLKVDVERARYWLSVGAQPTDTARRLLRQAG 78 (83)
T ss_dssp CEEEECCCCSSTTCCCCCCEEEESSSCTTCCCSEECCCBCSSCCS--TTCBCCCHHHHHHHHHTCCCBCSTTGGGTGGGC
T ss_pred CcEEeeecCCCCCCCeEEEEEEecCCCCCCCceeeeeEEcCCCCC--CceEEEchHHHHHHHHCCCcCCHHHHHHHHHcC
Confidence 489999999999999999999999999999999999999999853 478999999999999999999999999999999
Q ss_pred CCCC
Q 030410 82 LLPP 85 (178)
Q Consensus 82 llp~ 85 (178)
++++
T Consensus 79 ~~~~ 82 (83)
T 3pys_P 79 VFRQ 82 (83)
T ss_dssp SSCC
T ss_pred cccc
Confidence 9875
No 2
>3r8n_P 30S ribosomal protein S16; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ...
Probab=100.00 E-value=5.9e-42 Score=251.98 Aligned_cols=79 Identities=39% Similarity=0.792 Sum_probs=74.8
Q ss_pred ceEEeeccCCCCCCCeeEEEEeecCCCCCCcceeeeeeecCCCCCCCCceEEEeHHHHHHHHHCCCccCHHHHHHHHHcC
Q 030410 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAG 81 (178)
Q Consensus 2 ~VkIRLaR~G~KkrPfYRIVVaDsRspRDGK~IE~LG~YdPl~~~~~~K~i~Ln~eRIkyWL~~GAQPTdtV~~LL~kaG 81 (178)
||+|||+|+|+|++|||||||+|||++|||+|||+||||||++++. ++.+.||+||++|||++||||||||++||++++
T Consensus 1 mvkIRL~R~G~kk~PfYrIVvadsr~~RdGr~IE~lG~YnP~~~~~-~~~v~l~~eri~~Wl~~GAqptdtV~~Ll~~a~ 79 (82)
T 3r8n_P 1 MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEK-EEGTRLDLDRIAHWVGQGATISDRVAALIKEVN 79 (82)
T ss_dssp CEEEEEEECSCTTSCCEEEEEEETTSCTTSCEEEEEEEECTTCCSS-SCCCCCCHHHHHHHHHHTCEECHHHHHHHTTSC
T ss_pred CcEEhhhcCCCCCCCEEEEEEeecCCCCCCCceeeeeEEcCCCCCC-cceEEEcHHHHHHHHHCCCccCHHHHHHHHhhh
Confidence 4899999999999999999999999999999999999999998753 357999999999999999999999999999986
No 3
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A {Aquifex aeolicus} SCOP: d.27.1.1
Probab=100.00 E-value=7.5e-43 Score=269.54 Aligned_cols=83 Identities=39% Similarity=0.729 Sum_probs=73.0
Q ss_pred CceEEeeccCCCCCCCeeEEEEeecCCCCCCcceeeeeeecCCCCCCCCceEEEeHHHHHHHHHCCCccCHHHHHHHHHc
Q 030410 1 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRA 80 (178)
Q Consensus 1 M~VkIRLaR~G~KkrPfYRIVVaDsRspRDGK~IE~LG~YdPl~~~~~~K~i~Ln~eRIkyWL~~GAQPTdtV~~LL~ka 80 (178)
|+|+|||+|+|+|++|||||||+|||++|||+|||+||||||+ + ++.+.||+|||+|||++||||||||++||+++
T Consensus 1 M~VkIRL~R~G~KkrPfYrIVVaDsR~~RDGr~IE~lG~YnP~-~---~~~v~ld~eri~~WL~~GAQPTdtV~~LL~~a 76 (112)
T 3bn0_A 1 MAVRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDPK-R---KVLINVYPEKVKEWVLKGVELSHRAKAILWNH 76 (112)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEECC------CSEEEEEEETT-T---TEEEEECHHHHHHHHHTTCEEEHHHHHHHHHT
T ss_pred CcEEehhhcCCCCCCCeEEEEEEecCCCCCCCCEeEeeeccCC-C---cceEEEcHHHHHHHHHcCCccCHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999 3 37999999999999999999999999999999
Q ss_pred CCCCCCC
Q 030410 81 GLLPPPP 87 (178)
Q Consensus 81 Gllp~~p 87 (178)
|++++++
T Consensus 77 g~~~~~~ 83 (112)
T 3bn0_A 77 GILKEVV 83 (112)
T ss_dssp THHHHHC
T ss_pred CCcccch
Confidence 9998874
No 4
>3bbn_P Ribosomal protein S16; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=3.1e-42 Score=256.35 Aligned_cols=82 Identities=37% Similarity=0.659 Sum_probs=77.2
Q ss_pred ceEEeeccCCCCCCCeeEEEEeecCCCCCCcceeeeeeecCCCCCCCCceEEEeHHHHHHHHHCCCccCHHHHHHHHHcC
Q 030410 2 VVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRILFRAG 81 (178)
Q Consensus 2 ~VkIRLaR~G~KkrPfYRIVVaDsRspRDGK~IE~LG~YdPl~~~~~~K~i~Ln~eRIkyWL~~GAQPTdtV~~LL~kaG 81 (178)
||||||+|+|+|++|||||||+|||++|||+|||+||+|||+++ .+.||+||++|||++||||||||++||+++|
T Consensus 1 mvkIRL~R~G~KkrPfYrIVvadsr~~RDGr~IE~lG~YnP~~~-----~~~l~~eri~~Wl~~GAqpTdtV~~ll~~~g 75 (88)
T 3bbn_P 1 MVKLRLKRCGRKQRAVYRIVAIDVRSRREGRDLQKVGFYDPIKS-----QTYLNVPAILDFLEKGAQPTETVYDILKRAE 75 (88)
T ss_dssp CEEECCCCCSCTTCCCCCCCCEETTSCSSSCCSSCCCCBCTTSS-----CBCCCTTTSSSSTTSSCEECTTTSSSSTTTT
T ss_pred CeEEecccCCCCCCCeEEEEEEecCCCCCCCcEeEEEeccCCCC-----ceEEcHHHHHHHHHcCCccCHHHHHHHHHcC
Confidence 58999999999999999999999999999999999999999985 4899999999999999999999999999999
Q ss_pred CCCCCCc
Q 030410 82 LLPPPPM 88 (178)
Q Consensus 82 llp~~p~ 88 (178)
++++++.
T Consensus 76 ~~~~~~~ 82 (88)
T 3bbn_P 76 VFKEFRL 82 (88)
T ss_dssp SSSCC--
T ss_pred Ccccccc
Confidence 9998763
No 5
>1vbv_A Hypothetical protein B0966; protein degradation, structural genomics, unknown function; 2.70A {Escherichia coli} SCOP: b.34.17.1
Probab=38.85 E-value=18 Score=26.70 Aligned_cols=13 Identities=31% Similarity=0.746 Sum_probs=9.3
Q ss_pred CCCCCeeEEEEee
Q 030410 12 CKNKPFYRVMAAD 24 (178)
Q Consensus 12 ~KkrPfYRIVVaD 24 (178)
.|++|||+|+|-+
T Consensus 46 ~~~QPfYhVL~e~ 58 (105)
T 1vbv_A 46 LRAAPWYHVVMED 58 (105)
T ss_dssp --CCCEEEEEEEC
T ss_pred cCCCCceEEEEeC
Confidence 4899999988753
No 6
>3dxo_A Uncharacterized snoal-like protein; putative isomerase of the snoal-like family; HET: MSE PGE; 2.70A {Agrobacterium tumefaciens str} SCOP: d.17.4.19
Probab=29.18 E-value=23 Score=24.86 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=19.8
Q ss_pred eEEEEeecCCCC-CCcceeeeeeecCCC
Q 030410 18 YRVMAADSRSPR-DGKHLEVLGYYNPLP 44 (178)
Q Consensus 18 YRIVVaDsRspR-DGK~IE~LG~YdPl~ 44 (178)
+++-.+|--.=+ |||..+..||+||+|
T Consensus 93 ~~~~G~d~l~~~~dGrI~~~~~f~d~~p 120 (121)
T 3dxo_A 93 DVAGGTDVVSLNTEGRIDNVVGFLDGAV 120 (121)
T ss_dssp EEEEEEEEEEECTTSSEEEEEEEEEC--
T ss_pred ceeeEEEEEEECCCCCEEEEEEecCCCC
Confidence 356666665556 999999999999986
No 7
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=20.77 E-value=1.5e+02 Score=24.71 Aligned_cols=62 Identities=19% Similarity=0.275 Sum_probs=45.3
Q ss_pred eHHHHHHHHHCCCccCHHHHHHHH------------------HcCCCCCCCccccccCCCCCCCCCCCCCCCcccCCCcc
Q 030410 55 NFDRVKYWLSVGAQPSDPVQRILF------------------RAGLLPPPPMVAMGRKGGPRDTRPVDPMTGRVLEKPTN 116 (178)
Q Consensus 55 n~eRIkyWL~~GAQPTdtV~~LL~------------------kaGllp~~p~~~~~~kg~~~~~~p~~~~~~~~~~~~~~ 116 (178)
..||...+.--|..|++-++..|+ .+|++|. ..... -||.
T Consensus 110 gveR~is~kfGG~~p~eiiA~tLR~~fgqG~KV~vEi~lMAaDAGlIp~-eeVIA--iGGT------------------- 167 (201)
T 1vp8_A 110 GLERSISRKLGGVSRTEAIAEALRSLFGHGLKVCVEITIMAADSGAIPI-EEVVA--VGGR------------------- 167 (201)
T ss_dssp TTHHHHHHHTCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTSSCS-SCEEE--EECS-------------------
T ss_pred chhHHHHHhcCCCCHHHHHHHHHHHHhcCCceEEEEEeeeecccCCCCc-ceEEE--Eccc-------------------
Confidence 467777887788999999999999 6788887 33221 2221
Q ss_pred cCCCCCcccccccCCcceeeeeeecccccceeec
Q 030410 117 AKQIKADDICSHMNGLDLAFVFMHCTSSSILKLQ 150 (178)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (178)
-.|.|-|.|.--+.|++++.|+
T Consensus 168 ------------~~GaDTAlVirPAhs~~ffdl~ 189 (201)
T 1vp8_A 168 ------------SRGADTAVVIRPAHMNNFFDAE 189 (201)
T ss_dssp ------------SSSCCEEEEEECCCTTSGGGCE
T ss_pred ------------cCCcceEEEEeecccCCchhee
Confidence 1478889988888888887754
No 8
>1xrx_A SEQA protein; protein filament, LEFT-handed helix, DNA replication inhibit replication inhibitor; 2.15A {Escherichia coli} SCOP: a.43.1.7
Probab=16.83 E-value=80 Score=21.11 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=24.4
Q ss_pred ceEEEeHHHHHHHHHC----CCccCHHHHHHHHHcCC
Q 030410 50 KRMGLNFDRVKYWLSV----GAQPSDPVQRILFRAGL 82 (178)
Q Consensus 50 K~i~Ln~eRIkyWL~~----GAQPTdtV~~LL~kaGl 82 (178)
|.|.+|-|-.+|-.++ |--+|+..++||...+-
T Consensus 2 K~IEvDdelY~YIas~t~~igEsaSdiLRRll~l~~~ 38 (50)
T 1xrx_A 2 KTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAA 38 (50)
T ss_dssp EEEEECHHHHHHHHTTCSSTTCCHHHHHHHHHTC---
T ss_pred CceeecHHHHHHHHHhchhhccCHHHHHHHHHcCCcc
Confidence 5789999999988765 66778888888876654
No 9
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=14.99 E-value=1e+02 Score=21.91 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=19.7
Q ss_pred CCCcceeeeeeecCCCCCCCCceEEEeHHHHHHHHHC-CCccC
Q 030410 29 RDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSV-GAQPS 70 (178)
Q Consensus 29 RDGK~IE~LG~YdPl~~~~~~K~i~Ln~eRIkyWL~~-GAQPT 70 (178)
+||+.++++=-+.++.+. .+..+.+..||.. |+-+|
T Consensus 81 k~G~~v~~~~G~~~~gg~------~~~~~~le~~L~~~g~i~~ 117 (118)
T 3evi_A 81 KNGQIEAKFIGIIECGGI------NLKLEELEWKLAEVGAIQT 117 (118)
T ss_dssp ETTEEEEEEESTTTTTCS------SCCHHHHHHHHHTTTSCCC
T ss_pred ECCEEEEEEeChhhhCCC------CCCHHHHHHHHHHcCCcCC
Confidence 467666665545554321 3566666666643 55544
No 10
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=14.80 E-value=2.5e+02 Score=22.95 Aligned_cols=51 Identities=22% Similarity=0.299 Sum_probs=27.4
Q ss_pred EeeccCCCCCCCeeEEEEeecCCCCCCcceeeeeeecCCCCCCCCceEEEeHHHHHHHHH
Q 030410 5 IRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLS 64 (178)
Q Consensus 5 IRLaR~G~KkrPfYRIVVaDsRspRDGK~IE~LG~YdPl~~~~~~K~i~Ln~eRIkyWL~ 64 (178)
|++...|-.. +-|.|+..... .+|+ .+.+|+|+|... .+.++..+--.|.+
T Consensus 361 v~fd~~Gd~~-~~~~I~~~~~~--~~g~-~~~VG~~~~~~~-----~~~~~~~~~i~w~g 411 (441)
T 1jdp_A 361 VSIDANGDRY-GDFSVIAMTDV--EAGT-QEVIGDYFGKEG-----RFEMRPNVKYPWGP 411 (441)
T ss_dssp EEECTTSBBC-CEEEEEEEEET--TTTE-EEEEEEEETTTT-----EEEECC--------
T ss_pred eEECCCCCcc-ccEEEEecccC--CCCc-eEEEEEEcCCCC-----eEEECCCceeeCCC
Confidence 5566666543 67888776432 3565 688999999653 45554434444443
Done!