Query 030411
Match_columns 178
No_of_seqs 192 out of 1756
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 13:19:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030411.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030411hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01518 RHOD_YceA Member of th 99.9 2.7E-25 5.9E-30 153.6 8.2 100 49-177 2-101 (101)
2 cd01533 4RHOD_Repeat_2 Member 99.9 3.8E-24 8.2E-29 149.9 9.5 99 44-177 5-107 (109)
3 cd01523 RHOD_Lact_B Member of 99.9 1.1E-23 2.5E-28 145.2 9.7 99 51-177 1-100 (100)
4 cd01522 RHOD_1 Member of the R 99.9 8.1E-23 1.8E-27 145.1 10.8 102 51-177 1-104 (117)
5 cd01519 RHOD_HSP67B2 Member of 99.9 5.4E-23 1.2E-27 142.9 9.0 103 52-177 2-106 (106)
6 KOG1530 Rhodanese-related sulf 99.9 6.1E-23 1.3E-27 144.8 9.2 109 46-177 20-129 (136)
7 PRK00162 glpE thiosulfate sulf 99.9 5.9E-23 1.3E-27 143.6 9.0 96 47-177 3-98 (108)
8 cd01534 4RHOD_Repeat_3 Member 99.9 9.6E-23 2.1E-27 139.4 9.7 92 51-177 1-95 (95)
9 cd01520 RHOD_YbbB Member of th 99.9 4.7E-23 1E-27 148.5 8.4 123 51-177 1-126 (128)
10 cd01444 GlpE_ST GlpE sulfurtra 99.9 1.1E-22 2.4E-27 138.8 9.6 93 50-177 1-96 (96)
11 cd01527 RHOD_YgaP Member of th 99.9 6.1E-23 1.3E-27 141.2 8.1 93 49-177 2-94 (99)
12 cd01526 RHOD_ThiF Member of th 99.9 7.5E-23 1.6E-27 146.2 8.3 108 45-177 4-113 (122)
13 cd01525 RHOD_Kc Member of the 99.9 1.2E-22 2.7E-27 140.9 8.8 103 51-177 1-105 (105)
14 cd01528 RHOD_2 Member of the R 99.9 1.5E-22 3.2E-27 139.9 8.9 96 50-177 1-98 (101)
15 cd01530 Cdc25 Cdc25 phosphatas 99.9 2.3E-22 4.9E-27 143.7 10.1 99 49-177 2-121 (121)
16 PF00581 Rhodanese: Rhodanese- 99.9 4.2E-22 9.2E-27 139.0 11.1 107 52-177 1-112 (113)
17 cd01524 RHOD_Pyr_redox Member 99.9 2.4E-22 5.1E-27 136.1 9.4 89 51-176 1-89 (90)
18 PLN02160 thiosulfate sulfurtra 99.9 3.1E-22 6.7E-27 145.8 10.6 107 47-177 13-121 (136)
19 cd01449 TST_Repeat_2 Thiosulfa 99.9 1.8E-22 4E-27 142.9 8.9 105 51-177 1-118 (118)
20 PRK01415 hypothetical protein; 99.9 5.3E-22 1.2E-26 156.9 9.6 131 13-177 81-211 (247)
21 cd01447 Polysulfide_ST Polysul 99.9 4.9E-22 1.1E-26 137.2 8.2 100 51-177 1-101 (103)
22 cd01529 4RHOD_Repeats Member o 99.9 9.4E-22 2E-26 134.7 9.1 87 62-177 10-96 (96)
23 cd01448 TST_Repeat_1 Thiosulfa 99.9 2E-21 4.4E-26 138.4 9.6 109 51-177 2-120 (122)
24 PRK05320 rhodanese superfamily 99.9 3E-21 6.5E-26 154.1 9.7 105 44-177 105-215 (257)
25 cd01521 RHOD_PspE2 Member of t 99.9 4.5E-21 9.8E-26 134.6 9.5 94 49-177 8-105 (110)
26 cd01445 TST_Repeats Thiosulfat 99.8 7.9E-21 1.7E-25 138.7 10.5 109 51-177 1-138 (138)
27 cd01532 4RHOD_Repeat_1 Member 99.8 4.1E-21 8.9E-26 130.7 8.4 86 58-177 4-92 (92)
28 TIGR03865 PQQ_CXXCW PQQ-depend 99.8 7.7E-21 1.7E-25 142.2 9.8 108 46-177 33-157 (162)
29 cd01531 Acr2p Eukaryotic arsen 99.8 3.6E-21 7.8E-26 135.7 7.5 98 48-177 1-111 (113)
30 cd00158 RHOD Rhodanese Homolog 99.8 1.5E-20 3.3E-25 125.8 8.4 88 56-176 2-89 (89)
31 smart00450 RHOD Rhodanese Homo 99.8 2.6E-20 5.5E-25 126.5 8.6 94 62-177 2-96 (100)
32 PRK00142 putative rhodanese-re 99.8 5.5E-20 1.2E-24 150.7 10.6 103 46-177 109-211 (314)
33 cd01443 Cdc25_Acr2p Cdc25 enzy 99.8 7.3E-20 1.6E-24 129.0 8.9 99 49-177 2-113 (113)
34 TIGR03167 tRNA_sel_U_synt tRNA 99.8 1.7E-20 3.8E-25 153.3 6.0 111 64-177 2-114 (311)
35 PRK11784 tRNA 2-selenouridine 99.8 5.8E-20 1.3E-24 152.2 7.8 122 52-177 4-128 (345)
36 cd01535 4RHOD_Repeat_4 Member 99.8 2.1E-19 4.5E-24 132.2 8.2 87 56-177 2-89 (145)
37 PRK11493 sseA 3-mercaptopyruva 99.8 4E-19 8.6E-24 143.9 10.3 111 49-177 5-128 (281)
38 PRK08762 molybdopterin biosynt 99.8 3.9E-19 8.5E-24 149.3 9.6 95 48-177 2-97 (376)
39 TIGR02981 phageshock_pspE phag 99.8 6.4E-19 1.4E-23 122.0 8.9 79 63-177 17-97 (101)
40 PRK10287 thiosulfate:cyanide s 99.8 7.1E-19 1.5E-23 122.4 7.9 77 64-176 20-98 (104)
41 PRK07878 molybdopterin biosynt 99.8 5.3E-19 1.1E-23 149.1 8.8 99 46-177 284-383 (392)
42 PRK09629 bifunctional thiosulf 99.8 1.1E-18 2.4E-23 154.0 11.0 111 49-177 9-122 (610)
43 COG0607 PspE Rhodanese-related 99.8 8.5E-19 1.9E-23 122.1 7.4 93 52-177 8-101 (110)
44 PLN02723 3-mercaptopyruvate su 99.8 1.1E-18 2.4E-23 143.7 9.1 105 51-177 192-309 (320)
45 PLN02723 3-mercaptopyruvate su 99.8 2.1E-18 4.5E-23 142.0 10.7 111 49-177 22-144 (320)
46 PRK07411 hypothetical protein; 99.7 4.4E-18 9.6E-23 143.4 8.5 101 46-177 279-381 (390)
47 PRK11493 sseA 3-mercaptopyruva 99.7 6.2E-18 1.4E-22 136.9 7.9 105 50-177 154-271 (281)
48 PRK05597 molybdopterin biosynt 99.7 7E-18 1.5E-22 140.7 8.2 97 46-177 258-354 (355)
49 COG2897 SseA Rhodanese-related 99.7 1.5E-17 3.2E-22 133.9 9.7 106 50-177 157-274 (285)
50 cd01446 DSP_MapKP N-terminal r 99.7 2.8E-17 6.1E-22 118.8 9.8 113 50-177 1-126 (132)
51 PRK09629 bifunctional thiosulf 99.7 1.8E-17 3.9E-22 146.4 9.7 106 50-177 148-263 (610)
52 PRK05600 thiamine biosynthesis 99.7 6.4E-17 1.4E-21 135.4 9.0 96 49-174 271-370 (370)
53 COG2897 SseA Rhodanese-related 99.7 4.8E-16 1E-20 125.2 10.2 112 48-177 10-131 (285)
54 COG1054 Predicted sulfurtransf 99.7 9.1E-17 2E-21 128.1 6.0 130 13-175 81-210 (308)
55 PRK01269 tRNA s(4)U8 sulfurtra 99.5 1.3E-13 2.8E-18 119.3 9.3 79 55-169 399-481 (482)
56 KOG3772 M-phase inducer phosph 99.4 1.2E-13 2.5E-18 111.9 4.8 102 44-176 151-274 (325)
57 KOG1529 Mercaptopyruvate sulfu 99.2 5.2E-11 1.1E-15 94.9 9.0 111 49-177 5-129 (286)
58 KOG2017 Molybdopterin synthase 99.2 8.8E-12 1.9E-16 101.5 4.0 102 46-177 314-418 (427)
59 COG5105 MIH1 Mitotic inducer, 99.0 1.1E-09 2.3E-14 88.6 6.3 98 45-175 238-355 (427)
60 KOG1529 Mercaptopyruvate sulfu 98.9 2.3E-09 5E-14 85.5 6.0 92 63-176 171-274 (286)
61 COG2603 Predicted ATPase [Gene 98.3 7.6E-08 1.7E-12 77.1 -0.2 112 63-176 14-127 (334)
62 PF04273 DUF442: Putative phos 97.2 0.0022 4.7E-08 44.9 7.5 79 49-156 13-105 (110)
63 TIGR01244 conserved hypothetic 97.0 0.0045 9.8E-08 44.8 7.8 86 49-162 13-112 (135)
64 KOG1717 Dual specificity phosp 96.8 0.0013 2.7E-08 52.7 3.7 109 50-177 5-123 (343)
65 PF13350 Y_phosphatase3: Tyros 96.1 0.018 4E-07 42.7 6.0 123 39-163 18-152 (164)
66 KOG1093 Predicted protein kina 95.1 0.0079 1.7E-07 52.9 0.9 101 46-176 619-719 (725)
67 PRK00142 putative rhodanese-re 94.5 0.0055 1.2E-07 50.6 -1.6 41 51-92 16-56 (314)
68 smart00195 DSPc Dual specifici 92.1 1.1 2.3E-05 31.9 7.4 29 134-162 75-106 (138)
69 PLN02727 NAD kinase 91.9 0.76 1.6E-05 43.1 7.7 85 47-159 265-365 (986)
70 cd00127 DSPc Dual specificity 91.7 1.1 2.5E-05 31.5 7.2 29 134-162 78-109 (139)
71 KOG3636 Uncharacterized conser 91.2 0.61 1.3E-05 40.3 5.9 41 51-91 309-353 (669)
72 COG3453 Uncharacterized protei 90.3 2.1 4.5E-05 30.5 6.9 80 49-157 14-107 (130)
73 TIGR03167 tRNA_sel_U_synt tRNA 87.9 1.3 2.9E-05 36.5 5.5 36 47-82 134-172 (311)
74 PF00782 DSPc: Dual specificit 85.6 6.8 0.00015 27.4 7.6 29 134-162 70-101 (133)
75 PF09992 DUF2233: Predicted pe 84.4 1.3 2.8E-05 32.8 3.4 39 135-173 98-141 (170)
76 COG4822 CbiK Cobalamin biosynt 81.5 4.2 9.1E-05 32.0 5.2 61 108-168 102-173 (265)
77 COG2453 CDC14 Predicted protei 79.0 3.7 8.1E-05 30.9 4.3 37 126-162 94-133 (180)
78 TIGR03372 putres_am_tran putre 77.7 7 0.00015 33.8 6.1 52 125-176 121-177 (442)
79 PF03853 YjeF_N: YjeF-related 76.1 9.9 0.00021 28.3 5.8 36 131-167 17-57 (169)
80 PRK06148 hypothetical protein; 74.9 8.8 0.00019 36.9 6.4 54 124-177 666-721 (1013)
81 PRK06917 hypothetical protein; 74.3 9.4 0.0002 33.0 6.0 54 124-177 77-138 (447)
82 PRK08117 4-aminobutyrate amino 73.6 8.8 0.00019 32.9 5.6 52 125-176 90-143 (433)
83 PF05706 CDKN3: Cyclin-depende 71.7 5 0.00011 30.1 3.2 37 126-162 122-160 (168)
84 PRK12361 hypothetical protein; 71.5 27 0.0006 31.0 8.4 26 134-159 172-199 (547)
85 PRK07481 hypothetical protein; 70.7 12 0.00026 32.4 5.8 53 125-177 90-151 (449)
86 TIGR00201 comF comF family pro 70.1 9.1 0.0002 29.0 4.4 33 136-168 151-186 (190)
87 PRK07688 thiamine/molybdopteri 68.7 3.7 8E-05 34.3 2.2 37 47-84 275-317 (339)
88 cd00079 HELICc Helicase superf 68.4 21 0.00046 24.1 5.8 38 135-173 26-63 (131)
89 PRK06918 4-aminobutyrate amino 67.7 15 0.00032 31.7 5.8 54 124-177 100-156 (451)
90 PRK06916 adenosylmethionine--8 67.4 15 0.00033 31.9 5.8 52 125-176 103-162 (460)
91 PRK05639 4-aminobutyrate amino 67.1 17 0.00036 31.7 5.9 53 124-176 99-153 (457)
92 COG0062 Uncharacterized conser 67.0 21 0.00045 27.7 5.8 39 129-168 39-82 (203)
93 PRK00615 glutamate-1-semialdeh 66.6 18 0.00039 31.2 6.0 53 124-176 96-150 (433)
94 PRK05964 adenosylmethionine--8 66.4 17 0.00038 30.9 5.9 52 125-176 89-148 (423)
95 PLN02482 glutamate-1-semialdeh 66.4 18 0.00038 31.7 6.0 51 125-176 143-195 (474)
96 PRK06062 hypothetical protein; 66.3 16 0.00035 31.6 5.7 52 125-176 99-152 (451)
97 PRK11522 putrescine--2-oxoglut 66.2 17 0.00037 31.6 5.8 53 125-177 128-185 (459)
98 TIGR00197 yjeF_nterm yjeF N-te 65.6 21 0.00046 27.4 5.7 37 131-168 39-78 (205)
99 PRK07482 hypothetical protein; 65.6 20 0.00044 31.1 6.2 53 124-176 97-157 (461)
100 PF00156 Pribosyltran: Phospho 65.3 15 0.00033 25.1 4.5 32 136-167 87-121 (125)
101 PRK06541 hypothetical protein; 64.6 19 0.00042 31.2 5.9 53 125-177 99-159 (460)
102 PRK05965 hypothetical protein; 64.6 22 0.00047 30.9 6.2 52 125-176 94-153 (459)
103 TIGR01587 cas3_core CRISPR-ass 64.1 18 0.00039 29.8 5.5 49 125-173 210-259 (358)
104 PRK13360 omega amino acid--pyr 63.9 20 0.00043 31.0 5.8 52 125-176 93-152 (442)
105 PRK07986 adenosylmethionine--8 63.8 23 0.00049 30.5 6.1 52 125-176 90-148 (428)
106 PRK08297 L-lysine aminotransfe 62.9 23 0.00051 30.6 6.1 53 125-177 96-163 (443)
107 PRK07483 hypothetical protein; 62.7 24 0.00052 30.5 6.1 52 125-176 77-136 (443)
108 PRK07678 aminotransferase; Val 62.6 22 0.00047 30.8 5.8 52 125-177 93-152 (451)
109 PRK08360 4-aminobutyrate amino 61.9 23 0.00051 30.6 5.9 52 125-176 88-141 (443)
110 PF02590 SPOUT_MTase: Predicte 61.8 23 0.0005 26.2 5.0 47 129-175 59-110 (155)
111 PRK09162 hypoxanthine-guanine 61.5 16 0.00035 27.5 4.3 33 136-168 96-131 (181)
112 TIGR00853 pts-lac PTS system, 61.4 14 0.00029 24.9 3.5 27 137-163 3-33 (95)
113 TIGR00709 dat 2,4-diaminobutyr 61.2 25 0.00054 30.3 5.9 52 125-176 86-142 (442)
114 PRK07199 phosphoribosylpyropho 60.6 17 0.00036 29.9 4.5 33 136-168 210-245 (301)
115 PRK08593 4-aminobutyrate amino 60.6 24 0.00052 30.5 5.7 52 125-176 89-143 (445)
116 PRK05298 excinuclease ABC subu 60.5 16 0.00034 33.4 4.7 48 125-173 434-481 (652)
117 PF13344 Hydrolase_6: Haloacid 60.4 19 0.00041 24.3 4.1 37 124-163 20-57 (101)
118 PRK07036 hypothetical protein; 59.9 30 0.00066 30.1 6.3 52 125-176 99-158 (466)
119 PRK07030 adenosylmethionine--8 59.8 24 0.00052 30.8 5.6 52 125-176 94-153 (466)
120 TIGR00700 GABAtrnsam 4-aminobu 59.5 26 0.00056 29.9 5.7 53 125-177 80-135 (420)
121 PRK06149 hypothetical protein; 59.3 24 0.00053 33.8 5.9 52 125-176 628-681 (972)
122 COG0034 PurF Glutamine phospho 59.3 16 0.00035 31.8 4.3 34 136-169 347-383 (470)
123 cd05565 PTS_IIB_lactose PTS_II 58.9 12 0.00025 25.6 2.8 30 139-169 2-35 (99)
124 PRK06082 4-aminobutyrate amino 58.6 30 0.00065 30.1 6.0 52 125-176 117-170 (459)
125 KOG1712 Adenine phosphoribosyl 58.5 24 0.00051 26.6 4.5 39 125-163 110-151 (183)
126 PRK05769 4-aminobutyrate amino 58.4 32 0.00069 29.7 6.1 52 125-176 101-155 (441)
127 PRK06777 4-aminobutyrate amino 58.2 28 0.00061 29.7 5.7 52 125-176 87-141 (421)
128 PF14572 Pribosyl_synth: Phosp 58.2 20 0.00044 27.4 4.2 33 136-168 82-117 (184)
129 COG2519 GCD14 tRNA(1-methylade 57.6 24 0.00052 28.4 4.8 43 124-166 175-217 (256)
130 PTZ00393 protein tyrosine phos 57.2 27 0.00059 27.8 5.0 40 124-163 153-198 (241)
131 PRK06931 diaminobutyrate--2-ox 56.9 29 0.00062 30.2 5.6 53 125-177 105-162 (459)
132 PRK07495 4-aminobutyrate amino 56.8 34 0.00074 29.4 6.0 52 125-176 87-141 (425)
133 COG0001 HemL Glutamate-1-semia 56.6 35 0.00075 29.6 5.9 63 114-177 83-150 (432)
134 PLN03050 pyridoxine (pyridoxam 56.5 22 0.00047 28.4 4.4 30 138-168 61-93 (246)
135 PRK07046 aminotransferase; Val 56.5 29 0.00062 30.1 5.5 50 125-176 119-170 (453)
136 PRK08384 thiamine biosynthesis 56.4 17 0.00038 30.9 4.0 27 137-163 180-206 (381)
137 TIGR00631 uvrb excinuclease AB 56.3 22 0.00048 32.5 4.9 49 124-173 429-477 (655)
138 PRK06943 adenosylmethionine--8 56.1 36 0.00077 29.6 6.0 52 125-176 101-160 (453)
139 PRK09590 celB cellobiose phosp 55.8 17 0.00037 25.0 3.3 26 138-163 2-31 (104)
140 KOG0572 Glutamine phosphoribos 55.7 20 0.00043 30.7 4.2 32 136-167 355-389 (474)
141 TIGR00342 thiazole biosynthesi 55.7 19 0.00041 30.4 4.2 30 136-166 171-200 (371)
142 PRK06781 amidophosphoribosyltr 55.7 22 0.00048 31.2 4.6 34 136-169 347-383 (471)
143 PRK12389 glutamate-1-semialdeh 55.4 30 0.00065 29.7 5.4 52 125-177 97-150 (428)
144 TIGR00640 acid_CoA_mut_C methy 55.3 36 0.00078 24.3 5.0 46 124-172 43-92 (132)
145 PRK09792 4-aminobutyrate trans 55.1 35 0.00075 29.2 5.8 52 125-176 87-141 (421)
146 PRK06105 aminotransferase; Pro 55.1 43 0.00092 29.1 6.3 52 125-176 96-155 (460)
147 PRK10565 putative carbohydrate 54.9 33 0.00072 30.4 5.7 36 132-168 55-93 (508)
148 PRK11595 DNA utilization prote 54.9 25 0.00055 27.4 4.5 33 136-168 186-221 (227)
149 PLN03049 pyridoxine (pyridoxam 54.8 32 0.0007 30.1 5.5 29 138-167 60-91 (462)
150 PRK04923 ribose-phosphate pyro 54.8 25 0.00055 29.1 4.7 33 136-168 216-251 (319)
151 PRK06173 adenosylmethionine--8 54.5 45 0.00097 28.7 6.3 51 125-175 91-149 (429)
152 PRK09246 amidophosphoribosyltr 54.5 24 0.00051 31.2 4.7 34 136-169 357-393 (501)
153 PF02302 PTS_IIB: PTS system, 53.9 19 0.00042 23.2 3.2 25 139-163 1-30 (90)
154 PRK09221 beta alanine--pyruvat 53.5 40 0.00086 29.2 5.9 52 125-176 96-155 (445)
155 KOG1404 Alanine-glyoxylate ami 53.3 52 0.0011 28.3 6.3 51 124-174 95-147 (442)
156 PRK05630 adenosylmethionine--8 53.3 37 0.00081 29.1 5.7 52 125-176 87-146 (422)
157 PRK09264 diaminobutyrate--2-ox 52.8 37 0.0008 29.0 5.6 39 139-177 104-144 (425)
158 cd05564 PTS_IIB_chitobiose_lic 52.8 19 0.0004 24.2 3.0 25 139-163 1-29 (96)
159 PRK07480 putative aminotransfe 52.8 45 0.00097 29.0 6.1 53 124-176 97-157 (456)
160 COG1040 ComFC Predicted amidop 51.9 26 0.00057 27.5 4.2 31 138-168 185-218 (225)
161 PRK02269 ribose-phosphate pyro 51.8 27 0.00059 28.9 4.4 33 136-168 216-251 (320)
162 KOG0330 ATP-dependent RNA heli 51.7 21 0.00045 30.8 3.7 37 136-173 299-335 (476)
163 PTZ00110 helicase; Provisional 51.2 38 0.00082 30.1 5.5 37 136-173 376-412 (545)
164 PRK00103 rRNA large subunit me 50.8 59 0.0013 24.1 5.7 47 129-175 59-110 (157)
165 PRK02458 ribose-phosphate pyro 50.6 26 0.00056 29.1 4.1 33 136-168 217-252 (323)
166 TIGR00614 recQ_fam ATP-depende 50.5 38 0.00082 29.4 5.3 37 136-173 225-261 (470)
167 PRK06938 diaminobutyrate--2-ox 50.4 45 0.00098 29.0 5.8 39 139-177 128-168 (464)
168 cd02071 MM_CoA_mut_B12_BD meth 49.6 51 0.0011 22.9 5.0 46 124-172 40-89 (122)
169 PLN02918 pyridoxine (pyridoxam 49.6 43 0.00093 30.0 5.5 30 138-168 136-168 (544)
170 PF01488 Shikimate_DH: Shikima 49.4 48 0.001 23.4 4.9 33 136-169 11-43 (135)
171 COG0462 PrsA Phosphoribosylpyr 49.3 37 0.0008 28.2 4.7 33 136-168 213-248 (314)
172 PRK06058 4-aminobutyrate amino 49.0 59 0.0013 28.0 6.2 52 125-176 103-157 (443)
173 PF02879 PGM_PMM_II: Phosphogl 48.8 53 0.0011 21.9 4.9 28 137-164 21-48 (104)
174 TIGR00824 EIIA-man PTS system, 48.8 62 0.0013 22.4 5.3 41 128-170 49-91 (116)
175 TIGR03251 LAT_fam L-lysine 6-t 48.5 58 0.0012 28.0 6.1 42 136-177 101-156 (431)
176 PRK10310 PTS system galactitol 48.4 31 0.00068 23.0 3.6 29 139-168 4-37 (94)
177 PRK11192 ATP-dependent RNA hel 48.2 37 0.0008 28.9 4.9 37 136-173 244-280 (434)
178 KOG0685 Flavin-containing amin 48.0 35 0.00077 30.0 4.6 35 136-171 20-54 (498)
179 PRK03092 ribose-phosphate pyro 47.9 36 0.00079 28.0 4.6 34 136-169 200-236 (304)
180 PRK05793 amidophosphoribosyltr 47.7 34 0.00074 30.0 4.6 33 136-168 352-387 (469)
181 PRK07631 amidophosphoribosyltr 47.5 29 0.00063 30.5 4.1 34 136-169 347-383 (475)
182 PRK04612 argD acetylornithine 47.4 57 0.0012 27.8 5.9 51 125-176 86-145 (408)
183 PRK11784 tRNA 2-selenouridine 47.4 82 0.0018 26.5 6.6 35 49-83 150-187 (345)
184 COG0513 SrmB Superfamily II DN 47.2 49 0.0011 29.2 5.6 34 139-173 275-308 (513)
185 COG0160 GabT 4-aminobutyrate a 47.2 53 0.0012 28.7 5.6 53 124-176 102-157 (447)
186 PRK08341 amidophosphoribosyltr 46.9 31 0.00066 30.1 4.1 33 136-168 333-368 (442)
187 PRK08525 amidophosphoribosyltr 46.8 33 0.00072 29.8 4.4 33 136-168 339-374 (445)
188 PRK00934 ribose-phosphate pyro 46.7 38 0.00083 27.5 4.5 33 136-168 203-238 (285)
189 PRK04537 ATP-dependent RNA hel 46.5 33 0.00072 30.7 4.4 37 136-173 256-292 (572)
190 PRK04837 ATP-dependent RNA hel 46.4 39 0.00084 28.8 4.7 37 136-173 254-290 (423)
191 PRK10499 PTS system N,N'-diace 46.2 31 0.00068 23.7 3.4 26 138-163 4-33 (106)
192 KOG0333 U5 snRNP-like RNA heli 46.1 29 0.00062 31.1 3.8 36 136-172 516-551 (673)
193 TIGR02407 ectoine_ectB diamino 45.9 37 0.0008 28.9 4.5 38 139-176 100-139 (412)
194 cd00133 PTS_IIB PTS_IIB: subun 45.9 26 0.00056 21.7 2.8 21 139-159 1-22 (84)
195 PRK07349 amidophosphoribosyltr 45.9 36 0.00079 30.1 4.5 33 136-168 376-411 (500)
196 PRK00553 ribose-phosphate pyro 45.9 40 0.00088 28.1 4.6 33 136-168 217-252 (332)
197 PF00202 Aminotran_3: Aminotra 45.8 54 0.0012 27.1 5.4 52 125-176 63-122 (339)
198 TIGR00508 bioA adenosylmethion 45.6 60 0.0013 27.9 5.8 51 126-176 93-151 (427)
199 TIGR01134 purF amidophosphorib 45.2 42 0.00091 29.2 4.7 34 136-169 337-373 (442)
200 TIGR01090 apt adenine phosphor 45.0 46 0.001 24.6 4.4 32 135-166 107-141 (169)
201 PF07755 DUF1611: Protein of u 44.7 41 0.0009 27.7 4.4 20 54-73 77-96 (301)
202 PRK06388 amidophosphoribosyltr 44.1 36 0.00078 29.9 4.2 33 136-168 355-390 (474)
203 KOG2882 p-Nitrophenyl phosphat 44.0 1E+02 0.0022 25.5 6.5 31 54-84 13-43 (306)
204 PRK11057 ATP-dependent DNA hel 43.8 38 0.00081 30.6 4.4 37 136-173 235-271 (607)
205 TIGR00713 hemL glutamate-1-sem 43.7 66 0.0014 27.2 5.7 52 124-176 91-144 (423)
206 PRK07322 adenine phosphoribosy 43.7 53 0.0011 24.6 4.6 31 136-166 119-152 (178)
207 PRK00129 upp uracil phosphorib 43.6 53 0.0011 25.3 4.7 32 136-167 123-157 (209)
208 PF04122 CW_binding_2: Putativ 43.4 37 0.00081 22.2 3.4 35 136-173 49-83 (92)
209 PLN02541 uracil phosphoribosyl 43.4 53 0.0011 26.2 4.7 32 136-167 156-192 (244)
210 PRK08742 adenosylmethionine--8 43.3 80 0.0017 27.6 6.2 39 139-177 130-176 (472)
211 COG2185 Sbm Methylmalonyl-CoA 43.1 75 0.0016 23.3 5.1 40 134-173 60-103 (143)
212 TIGR01203 HGPRTase hypoxanthin 42.8 53 0.0011 24.3 4.4 32 136-167 83-117 (166)
213 TIGR01091 upp uracil phosphori 42.7 55 0.0012 25.2 4.6 33 136-168 121-156 (207)
214 cd03423 SirA SirA (also known 42.5 82 0.0018 19.5 5.6 34 130-163 19-52 (69)
215 PLN02369 ribose-phosphate pyro 42.4 51 0.0011 27.1 4.6 34 136-169 201-237 (302)
216 PRK02304 adenine phosphoribosy 42.2 65 0.0014 23.9 4.9 31 135-165 112-145 (175)
217 PRK11776 ATP-dependent RNA hel 42.1 41 0.0009 28.9 4.3 36 137-173 242-277 (460)
218 cd05567 PTS_IIB_mannitol PTS_I 42.1 37 0.00081 22.1 3.2 26 138-163 1-31 (87)
219 PLN02440 amidophosphoribosyltr 42.0 43 0.00092 29.5 4.3 34 136-169 339-375 (479)
220 PRK10590 ATP-dependent RNA hel 42.0 44 0.00096 28.8 4.4 37 136-173 244-280 (456)
221 PF03610 EIIA-man: PTS system 41.9 1.1E+02 0.0024 20.8 6.0 42 127-170 47-90 (116)
222 COG2518 Pcm Protein-L-isoaspar 41.5 61 0.0013 25.3 4.6 25 153-177 110-135 (209)
223 PLN03137 ATP-dependent DNA hel 41.3 60 0.0013 31.9 5.4 37 136-173 679-715 (1195)
224 PRK11018 hypothetical protein; 41.1 95 0.0021 19.8 5.6 34 130-163 28-61 (78)
225 KOG0332 ATP-dependent RNA heli 41.0 34 0.00073 29.4 3.3 33 140-173 333-365 (477)
226 COG4992 ArgD Ornithine/acetylo 40.8 87 0.0019 27.0 5.8 48 126-174 89-141 (404)
227 PRK01565 thiamine biosynthesis 40.7 37 0.0008 28.9 3.7 30 136-166 175-204 (394)
228 PTZ00145 phosphoribosylpyropho 40.2 49 0.0011 28.8 4.3 33 136-168 334-369 (439)
229 PRK01297 ATP-dependent RNA hel 39.6 53 0.0011 28.5 4.6 37 136-173 334-370 (475)
230 COG0301 ThiI Thiamine biosynth 39.5 49 0.0011 28.3 4.1 26 138-163 176-201 (383)
231 PF00218 IGPS: Indole-3-glycer 39.2 55 0.0012 26.3 4.2 92 50-166 141-236 (254)
232 TIGR00537 hemK_rel_arch HemK-r 39.1 85 0.0018 23.1 5.1 48 125-172 121-168 (179)
233 PRK04914 ATP-dependent helicas 39.0 51 0.0011 31.7 4.6 38 136-174 492-530 (956)
234 PF07879 PHB_acc_N: PHB/PHA ac 38.8 43 0.00093 21.0 2.8 29 47-75 16-45 (64)
235 KOG1386 Nucleoside phosphatase 38.7 31 0.00068 30.3 2.9 14 73-86 70-83 (501)
236 PRK06827 phosphoribosylpyropho 38.5 58 0.0013 27.8 4.5 32 136-167 263-297 (382)
237 PF04343 DUF488: Protein of un 38.4 32 0.0007 23.9 2.5 22 52-73 1-23 (122)
238 PRK10113 cell division modulat 38.2 13 0.00028 23.6 0.4 39 136-175 8-46 (80)
239 PRK09200 preprotein translocas 38.1 68 0.0015 30.2 5.2 37 135-172 426-462 (790)
240 PLN02760 4-aminobutyrate:pyruv 37.9 1.1E+02 0.0023 27.1 6.2 52 125-176 137-197 (504)
241 cd03422 YedF YedF is a bacteri 37.8 1E+02 0.0022 19.1 5.6 36 130-166 19-54 (69)
242 PLN02297 ribose-phosphate pyro 37.5 60 0.0013 27.1 4.3 33 136-168 229-264 (326)
243 PRK02812 ribose-phosphate pyro 37.3 58 0.0013 27.2 4.2 34 136-169 229-265 (330)
244 TIGR03158 cas3_cyano CRISPR-as 36.9 84 0.0018 26.2 5.2 38 136-173 271-309 (357)
245 PLN02293 adenine phosphoribosy 36.8 83 0.0018 23.9 4.7 32 134-165 122-156 (187)
246 PLN02347 GMP synthetase 36.8 89 0.0019 28.0 5.5 49 125-174 217-268 (536)
247 PRK12403 putative aminotransfe 36.6 1.2E+02 0.0026 26.3 6.3 52 125-176 102-161 (460)
248 PRK07847 amidophosphoribosyltr 36.6 62 0.0013 28.8 4.5 33 136-168 366-401 (510)
249 PRK07272 amidophosphoribosyltr 36.4 65 0.0014 28.4 4.6 34 136-169 349-385 (484)
250 TIGR01367 pyrE_Therm orotate p 36.4 81 0.0017 23.9 4.6 31 135-165 103-136 (187)
251 KOG1403 Predicted alanine-glyo 36.2 1E+02 0.0023 25.8 5.4 38 136-173 100-139 (452)
252 PF14606 Lipase_GDSL_3: GDSL-l 35.9 1.2E+02 0.0025 23.1 5.3 45 125-170 82-144 (178)
253 PRK13104 secA preprotein trans 35.8 73 0.0016 30.4 5.0 39 134-173 441-479 (896)
254 TIGR01389 recQ ATP-dependent D 35.8 92 0.002 27.9 5.6 36 137-173 224-259 (591)
255 COG1576 Uncharacterized conser 35.5 1.2E+02 0.0026 22.5 5.2 47 128-175 58-109 (155)
256 TIGR01251 ribP_PPkin ribose-ph 35.3 73 0.0016 26.2 4.5 33 136-168 209-244 (308)
257 cd05566 PTS_IIB_galactitol PTS 35.0 51 0.0011 21.2 3.0 24 139-162 2-30 (89)
258 PRK01259 ribose-phosphate pyro 34.6 70 0.0015 26.4 4.3 33 136-168 207-242 (309)
259 TIGR00246 tRNA_RlmH_YbeA rRNA 34.5 1.2E+02 0.0026 22.3 5.1 45 129-175 58-107 (153)
260 COG0162 TyrS Tyrosyl-tRNA synt 34.3 91 0.002 26.9 5.0 37 139-176 32-78 (401)
261 cd05563 PTS_IIB_ascorbate PTS_ 34.2 52 0.0011 21.1 2.9 25 139-163 1-30 (86)
262 PRK12898 secA preprotein trans 34.0 88 0.0019 28.8 5.1 36 136-172 472-507 (656)
263 PTZ00424 helicase 45; Provisio 34.0 79 0.0017 26.4 4.6 36 137-173 267-302 (401)
264 PRK13802 bifunctional indole-3 33.9 3.2E+02 0.0069 25.4 8.7 90 51-165 144-237 (695)
265 TIGR03714 secA2 accessory Sec 33.3 95 0.0021 29.1 5.3 38 135-173 422-459 (762)
266 PF13580 SIS_2: SIS domain; PD 33.1 1.2E+02 0.0026 21.4 4.9 45 124-169 89-137 (138)
267 PRK12906 secA preprotein trans 33.0 86 0.0019 29.5 5.0 38 135-173 438-475 (796)
268 PLN02645 phosphoglycolate phos 32.5 2E+02 0.0043 23.4 6.7 26 47-72 12-37 (311)
269 COG0514 RecQ Superfamily II DN 32.0 66 0.0014 29.2 4.0 37 136-173 229-265 (590)
270 PF06901 FrpC: RTX iron-regula 32.0 69 0.0015 24.9 3.5 59 118-176 120-179 (271)
271 COG0281 SfcA Malic enzyme [Ene 31.9 1.5E+02 0.0033 25.7 5.9 32 137-169 199-232 (432)
272 TIGR00963 secA preprotein tran 31.8 84 0.0018 29.4 4.6 37 134-171 402-438 (745)
273 smart00012 PTPc_DSPc Protein t 31.5 1.1E+02 0.0023 19.6 4.2 16 136-151 38-54 (105)
274 smart00404 PTPc_motif Protein 31.5 1.1E+02 0.0023 19.6 4.2 16 136-151 38-54 (105)
275 PRK09123 amidophosphoribosyltr 31.4 84 0.0018 27.7 4.5 33 136-168 359-394 (479)
276 cd00006 PTS_IIA_man PTS_IIA, P 31.0 1.7E+02 0.0036 20.2 5.2 43 127-170 47-90 (122)
277 KOG1401 Acetylornithine aminot 30.8 1.4E+02 0.003 25.9 5.5 38 137-174 115-160 (433)
278 COG0035 Upp Uracil phosphoribo 30.6 1.1E+02 0.0024 23.9 4.5 33 136-168 123-159 (210)
279 COG1440 CelA Phosphotransferas 30.4 64 0.0014 22.2 2.8 22 138-159 2-23 (102)
280 PRK04013 argD acetylornithine/ 30.3 1.5E+02 0.0033 24.9 5.7 38 139-176 82-121 (364)
281 PRK13809 orotate phosphoribosy 30.2 1.2E+02 0.0026 23.4 4.7 30 134-163 115-147 (206)
282 PRK11634 ATP-dependent RNA hel 30.2 83 0.0018 28.7 4.3 36 137-173 245-280 (629)
283 PF14681 UPRTase: Uracil phosp 30.1 1.2E+02 0.0027 23.2 4.8 32 136-167 120-156 (207)
284 PRK02277 orotate phosphoribosy 29.5 1.1E+02 0.0024 23.4 4.4 31 136-166 139-172 (200)
285 PRK09426 methylmalonyl-CoA mut 29.5 1.1E+02 0.0023 28.5 5.0 46 124-172 623-672 (714)
286 KOG1342 Histone deacetylase co 29.3 2E+02 0.0044 24.7 6.1 64 84-170 222-299 (425)
287 PF10903 DUF2691: Protein of u 29.3 2.4E+02 0.0052 20.9 7.2 33 137-169 110-142 (153)
288 PRK01269 tRNA s(4)U8 sulfurtra 29.1 72 0.0016 28.0 3.7 29 137-166 177-205 (482)
289 KOG0331 ATP-dependent RNA heli 28.9 87 0.0019 27.9 4.1 45 127-172 329-375 (519)
290 PRK09694 helicase Cas3; Provis 28.7 1.2E+02 0.0025 29.0 5.1 50 124-173 547-598 (878)
291 cd03420 SirA_RHOD_Pry_redox Si 28.6 1.5E+02 0.0032 18.3 5.6 34 130-163 19-52 (69)
292 PF02863 Arg_repressor_C: Argi 28.2 92 0.002 19.5 3.2 25 135-159 45-69 (70)
293 COG1926 Predicted phosphoribos 28.1 1.2E+02 0.0026 23.8 4.3 33 136-168 123-158 (220)
294 PRK05205 bifunctional pyrimidi 27.9 1.3E+02 0.0028 22.3 4.5 31 136-166 94-128 (176)
295 TIGR03246 arg_catab_astC succi 27.7 2.1E+02 0.0046 24.0 6.3 37 140-176 94-138 (397)
296 PLN02238 hypoxanthine phosphor 27.4 1.2E+02 0.0026 23.0 4.3 31 136-166 96-129 (189)
297 PRK08335 translation initiatio 27.2 1.5E+02 0.0033 24.1 5.0 14 134-147 107-120 (275)
298 PRK13107 preprotein translocas 27.1 1.1E+02 0.0023 29.3 4.5 39 134-173 446-484 (908)
299 PRK11070 ssDNA exonuclease Rec 26.5 1E+02 0.0022 27.8 4.2 43 124-166 56-102 (575)
300 PF13399 LytR_C: LytR cell env 26.0 1.4E+02 0.0031 19.2 4.0 28 137-164 3-32 (90)
301 PF02780 Transketolase_C: Tran 25.9 1.3E+02 0.0028 20.7 3.9 28 136-163 8-37 (124)
302 COG1832 Predicted CoA-binding 25.8 1.2E+02 0.0026 22.1 3.7 32 134-166 13-47 (140)
303 PRK08762 molybdopterin biosynt 25.6 1.4E+02 0.0029 25.2 4.6 36 136-172 134-169 (376)
304 PRK00121 trmB tRNA (guanine-N( 25.5 1.6E+02 0.0035 22.2 4.7 48 124-172 136-183 (202)
305 cd05568 PTS_IIB_bgl_like PTS_I 25.3 1.1E+02 0.0023 19.2 3.2 22 139-160 2-24 (85)
306 PRK12381 bifunctional succinyl 25.3 2.3E+02 0.0049 23.9 6.0 38 139-176 97-142 (406)
307 PRK10853 putative reductase; P 25.2 1.4E+02 0.003 20.8 4.0 24 140-163 2-26 (118)
308 KOG0342 ATP-dependent RNA heli 25.2 4.3E+02 0.0093 23.7 7.5 37 136-173 329-365 (543)
309 PF01206 TusA: Sulfurtransfera 25.1 1.7E+02 0.0037 17.8 5.0 36 128-163 18-53 (70)
310 COG1891 Uncharacterized protei 25.1 55 0.0012 25.1 1.9 27 49-76 6-32 (235)
311 PRK10696 tRNA 2-thiocytidine b 25.1 1.2E+02 0.0027 23.9 4.1 42 134-176 26-75 (258)
312 PRK03715 argD acetylornithine 25.0 1.2E+02 0.0025 25.8 4.2 37 140-176 95-138 (395)
313 PTZ00346 histone deacetylase; 24.9 3.1E+02 0.0066 24.0 6.6 23 152-174 298-320 (429)
314 TIGR02190 GlrX-dom Glutaredoxi 24.9 1.7E+02 0.0036 18.3 4.1 28 136-163 6-34 (79)
315 cd03028 GRX_PICOT_like Glutare 24.6 1.8E+02 0.004 18.8 4.3 28 136-163 6-39 (90)
316 COG3620 Predicted transcriptio 24.6 94 0.002 23.5 3.0 31 141-171 75-105 (187)
317 PF00289 CPSase_L_chain: Carba 24.2 1.2E+02 0.0026 20.9 3.4 29 140-168 4-32 (110)
318 TIGR00336 pyrE orotate phospho 23.9 1.9E+02 0.0041 21.4 4.7 30 134-163 105-137 (173)
319 PRK00919 GMP synthase subunit 23.9 2.3E+02 0.0049 23.4 5.5 44 127-172 12-58 (307)
320 TIGR00365 monothiol glutaredox 23.9 1.9E+02 0.0042 19.1 4.3 28 136-163 10-43 (97)
321 PRK04073 rocD ornithine--oxo-a 23.8 2.9E+02 0.0062 23.1 6.3 37 140-176 99-145 (396)
322 PRK09219 xanthine phosphoribos 23.8 1.9E+02 0.0042 21.9 4.8 31 133-163 113-146 (189)
323 PRK13812 orotate phosphoribosy 23.8 1.9E+02 0.0041 21.6 4.7 30 134-163 104-136 (176)
324 KOG4053 Ataxin-1, involved in 23.7 1.2E+02 0.0026 23.5 3.5 46 46-91 50-95 (224)
325 cd05311 NAD_bind_2_malic_enz N 23.6 1.6E+02 0.0035 22.9 4.4 33 136-169 24-58 (226)
326 PRK13810 orotate phosphoribosy 23.5 1.9E+02 0.0042 21.9 4.7 31 133-163 118-151 (187)
327 TIGR00682 lpxK tetraacyldisacc 23.5 1.2E+02 0.0026 25.1 3.8 33 140-176 102-135 (311)
328 PF03162 Y_phosphatase2: Tyros 23.4 96 0.0021 23.0 3.0 36 124-159 76-114 (164)
329 cd00291 SirA_YedF_YeeD SirA, Y 23.4 1.8E+02 0.0039 17.5 5.6 33 131-163 20-52 (69)
330 PF03720 UDPG_MGDP_dh_C: UDP-g 23.1 84 0.0018 21.2 2.5 27 46-73 77-103 (106)
331 PTZ00242 protein tyrosine phos 23.0 3.1E+02 0.0068 20.2 10.2 28 134-161 95-124 (166)
332 PF08353 DUF1727: Domain of un 22.9 50 0.0011 23.0 1.3 23 146-168 60-84 (113)
333 PRK12904 preprotein translocas 22.9 1.6E+02 0.0034 28.0 4.8 35 135-170 428-462 (830)
334 PF01118 Semialdhyde_dh: Semia 22.7 1.4E+02 0.003 20.5 3.6 36 136-172 65-100 (121)
335 TIGR00699 GABAtrns_euk 4-amino 22.6 2.3E+02 0.0049 24.8 5.5 43 134-176 118-189 (464)
336 PRK13811 orotate phosphoribosy 22.6 2E+02 0.0042 21.4 4.5 28 136-163 103-133 (170)
337 TIGR01848 PHA_reg_PhaR polyhyd 22.5 1.1E+02 0.0024 21.2 2.8 30 47-76 16-46 (107)
338 TIGR01459 HAD-SF-IIA-hyp4 HAD- 22.5 3.3E+02 0.0071 21.0 6.1 12 59-70 4-15 (242)
339 COG3367 Uncharacterized conser 22.5 3.3E+02 0.0071 22.9 6.1 30 138-167 148-183 (339)
340 cd00610 OAT_like Acetyl ornith 22.4 3E+02 0.0065 22.8 6.2 52 125-176 83-136 (413)
341 COG3414 SgaB Phosphotransferas 22.3 1.5E+02 0.0033 19.9 3.5 26 138-163 2-32 (93)
342 COG4122 Predicted O-methyltran 22.3 2.4E+02 0.0053 22.1 5.1 38 132-169 79-117 (219)
343 COG0647 NagD Predicted sugar p 22.2 1.5E+02 0.0033 24.0 4.1 26 136-161 39-65 (269)
344 PRK00455 pyrE orotate phosphor 22.1 2E+02 0.0043 21.8 4.6 29 136-164 112-143 (202)
345 PF00975 Thioesterase: Thioest 22.1 2.4E+02 0.0052 21.1 5.1 44 126-170 55-102 (229)
346 PF02534 T4SS-DNA_transf: Type 22.0 1.4E+02 0.003 25.7 4.2 32 137-169 70-101 (469)
347 KOG1716 Dual specificity phosp 21.9 1.8E+02 0.0039 23.5 4.5 29 134-162 152-183 (285)
348 PTZ00149 hypoxanthine phosphor 21.5 1.6E+02 0.0035 23.4 4.1 31 136-166 149-182 (241)
349 TIGR01744 XPRTase xanthine pho 21.4 2.2E+02 0.0048 21.6 4.7 30 134-163 114-146 (191)
350 cd01300 YtcJ_like YtcJ_like me 21.3 1.7E+02 0.0037 25.3 4.5 33 131-163 106-138 (479)
351 PLN00144 acetylornithine trans 21.0 2.8E+02 0.0061 23.3 5.7 37 140-176 74-125 (382)
352 PF13450 NAD_binding_8: NAD(P) 21.0 1.4E+02 0.003 18.4 3.0 24 146-170 4-27 (68)
353 PRK09189 uroporphyrinogen-III 21.0 2.4E+02 0.0052 21.8 5.0 39 124-163 105-143 (240)
354 cd03027 GRX_DEP Glutaredoxin ( 20.9 1.8E+02 0.0039 17.7 3.5 25 139-163 2-27 (73)
355 COG0169 AroE Shikimate 5-dehyd 20.7 3.4E+02 0.0074 22.1 5.9 31 138-169 127-157 (283)
356 TIGR01809 Shik-DH-AROM shikima 20.7 2.1E+02 0.0044 23.1 4.6 33 136-169 124-156 (282)
357 PF02606 LpxK: Tetraacyldisacc 20.5 1.6E+02 0.0035 24.4 4.1 33 141-176 110-142 (326)
358 PF13738 Pyr_redox_3: Pyridine 20.4 1.7E+02 0.0037 21.5 3.9 31 136-168 166-196 (203)
359 COG0503 Apt Adenine/guanine ph 20.3 2.6E+02 0.0057 20.9 4.9 32 132-163 111-145 (179)
360 PRK06031 phosphoribosyltransfe 20.1 2.4E+02 0.0052 22.2 4.8 29 135-163 152-183 (233)
361 PRK00278 trpC indole-3-glycero 20.0 4.5E+02 0.0099 20.9 8.1 40 124-165 198-237 (260)
362 PRK00377 cbiT cobalt-precorrin 20.0 3E+02 0.0066 20.5 5.3 39 124-162 125-163 (198)
No 1
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.92 E-value=2.7e-25 Score=153.64 Aligned_cols=100 Identities=23% Similarity=0.401 Sum_probs=83.1
Q ss_pred eeeCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHH
Q 030411 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQ 128 (178)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (178)
+.|+++++.+++++++.+|||||++.||..+|||||+|+|+..+... .+.+.
T Consensus 2 ~~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~~----------------------------~~~~~ 53 (101)
T cd01518 2 TYLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFREF----------------------------PFWLD 53 (101)
T ss_pred CcCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHhHh----------------------------HHHHH
Confidence 46899999999987789999999999999999999999998754210 01111
Q ss_pred HHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 129 SVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 129 ~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
.. ..++++++||+||++|.||..++..|...||+||++|+||+.+|.+
T Consensus 54 ~~-~~~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~ 101 (101)
T cd01518 54 EN-LDLLKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGILKYLE 101 (101)
T ss_pred hh-hhhcCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHHHHhC
Confidence 11 1236889999999999999999999999999999999999999975
No 2
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.91 E-value=3.8e-24 Score=149.94 Aligned_cols=99 Identities=26% Similarity=0.290 Sum_probs=83.7
Q ss_pred eccCceeeCHHHHHHHhhcC-CeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCC
Q 030411 44 IRADVNYVNAEEAKNLIAVE-RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQ 122 (178)
Q Consensus 44 ~~~~~~~Is~~e~~~~l~~~-~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 122 (178)
.....+.|+++++.++++++ +.+|||||++.||..||||||+|+|+.++..
T Consensus 5 ~~~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~~l~~---------------------------- 56 (109)
T cd01533 5 AVRHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGAELVL---------------------------- 56 (109)
T ss_pred ccccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHHHHHH----------------------------
Confidence 34456789999999998755 5789999999999999999999999874321
Q ss_pred ChHHHHHHHhcC--CCCCeEEEEcCCChhHHHHHHHHHHcCCce-EEEeccccccccC
Q 030411 123 NPEFVQSVKSQF--SPESKLLVVCQEGLRSAAAANKLEEAGFQN-IACITSGLQTVKP 177 (178)
Q Consensus 123 ~~~~~~~~~~~~--~~~~~iviyC~~g~rs~~aa~~L~~~G~~~-v~~l~GG~~~w~~ 177 (178)
....+ +++++||+||.+|.||..+++.|+..||+| +++|+||+.+|+.
T Consensus 57 -------~~~~l~~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~ 107 (109)
T cd01533 57 -------RVGELAPDPRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQGWTL 107 (109)
T ss_pred -------HHHhcCCCCCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHHHHh
Confidence 12222 467899999999999999999999999998 9999999999975
No 3
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.90 E-value=1.1e-23 Score=145.19 Aligned_cols=99 Identities=22% Similarity=0.384 Sum_probs=81.7
Q ss_pred eCHHHHHHHhhcC-CeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHHH
Q 030411 51 VNAEEAKNLIAVE-RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQS 129 (178)
Q Consensus 51 Is~~e~~~~l~~~-~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (178)
|+++++.++++++ +.+|||||+++||+.+|||||+|+|+..+.... .+....
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~---------------------------~~~~~~ 53 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFDF---------------------------LEIEED 53 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHHH---------------------------HHhhHH
Confidence 6889999998764 689999999999999999999999987542100 000122
Q ss_pred HHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 130 VKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 130 ~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
....++++++||+||.+|.+|..++..|++.||+ +++|+||+.+|+.
T Consensus 54 ~~~~~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~-~~~l~GG~~~W~~ 100 (100)
T cd01523 54 ILDQLPDDQEVTVICAKEGSSQFVAELLAERGYD-VDYLAGGMKAWSE 100 (100)
T ss_pred HHhhCCCCCeEEEEcCCCCcHHHHHHHHHHcCce-eEEeCCcHHhhcC
Confidence 3455788999999999999999999999999998 9999999999974
No 4
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.89 E-value=8.1e-23 Score=145.14 Aligned_cols=102 Identities=24% Similarity=0.430 Sum_probs=85.3
Q ss_pred eCHHHHHHHhhc-CCeEEEeeCChhhhh-hccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHH
Q 030411 51 VNAEEAKNLIAV-ERYAVLDVRDNSQYN-RAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQ 128 (178)
Q Consensus 51 Is~~e~~~~l~~-~~~~lIDvR~~~e~~-~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (178)
|+++++.+++++ ++.+|||||++.||+ .||||||+|+|+.++... .++..+..
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~-------------------------~~~~~~~~ 55 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDM-------------------------EINPNFLA 55 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhcccc-------------------------ccCHHHHH
Confidence 689999999987 478999999999999 999999999998754321 01133444
Q ss_pred HHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 129 SVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 129 ~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
.+...++++++||+||++|.+|..+++.|...||+|++.+.|||.+|++
T Consensus 56 ~l~~~~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~~~~ 104 (117)
T cd01522 56 ELEEKVGKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLD 104 (117)
T ss_pred HHHhhCCCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceecCCC
Confidence 4444457889999999999999999999999999999999999999975
No 5
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.89 E-value=5.4e-23 Score=142.91 Aligned_cols=103 Identities=23% Similarity=0.325 Sum_probs=82.4
Q ss_pred CHHHHHHHhh-cCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHHHH
Q 030411 52 NAEEAKNLIA-VERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSV 130 (178)
Q Consensus 52 s~~e~~~~l~-~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (178)
+++++.++++ .++.+|||+|++.||..||||||+|+|+..+.+.. .....+|.+..
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~-----------------------~~~~~~~~~~~ 58 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDAL-----------------------ALSEEEFEKKY 58 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhhh-----------------------CCCHHHHHHHh
Confidence 6788988887 66799999999999999999999999987543210 01112343332
Q ss_pred Hhc-CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 131 KSQ-FSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 131 ~~~-~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
... ++++++||+||.+|.+|..+++.|..+||+||++|+||+.+|..
T Consensus 59 ~~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~~W~~ 106 (106)
T cd01519 59 GFPKPSKDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWLDWAA 106 (106)
T ss_pred cccCCCCCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHHHHcC
Confidence 222 46788999999999999999999999999999999999999974
No 6
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.89 E-value=6.1e-23 Score=144.78 Aligned_cols=109 Identities=26% Similarity=0.433 Sum_probs=95.1
Q ss_pred cCceeeCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChH
Q 030411 46 ADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPE 125 (178)
Q Consensus 46 ~~~~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 125 (178)
..+..++.+++.++++.++.++||||.++||..||||.++|||+.... ..+...+++
T Consensus 20 ~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~-----------------------~~~~l~~~e 76 (136)
T KOG1530|consen 20 SNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRP-----------------------GAGALKNPE 76 (136)
T ss_pred CCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccc-----------------------cccccCCHH
Confidence 456789999999999987899999999999999999999999996432 234455789
Q ss_pred HHHHHHhcCC-CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 126 FVQSVKSQFS-PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 126 ~~~~~~~~~~-~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
|........+ .++.|||+|.+|.||..|...|...||+||.++.|||.+|.+
T Consensus 77 F~kqvg~~kp~~d~eiIf~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~ 129 (136)
T KOG1530|consen 77 FLKQVGSSKPPHDKEIIFGCASGVRSLKATKILVSAGYKNVGNYPGSYLAWVD 129 (136)
T ss_pred HHHHhcccCCCCCCcEEEEeccCcchhHHHHHHHHcCcccccccCccHHHHHH
Confidence 9988777665 456999999999999999999999999999999999999954
No 7
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.89 E-value=5.9e-23 Score=143.62 Aligned_cols=96 Identities=21% Similarity=0.355 Sum_probs=84.5
Q ss_pred CceeeCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHH
Q 030411 47 DVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (178)
Q Consensus 47 ~~~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (178)
.++.|+++++.+++++++.+|||+|++.||..+|||||+|+|+..+
T Consensus 3 ~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~~~l---------------------------------- 48 (108)
T PRK00162 3 QFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTNDSL---------------------------------- 48 (108)
T ss_pred CccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCHHHH----------------------------------
Confidence 4678999999999976778999999999999999999999998633
Q ss_pred HHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 127 VQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 127 ~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
......+++++++++||.+|.+|..++..|+..||+||++|+||+.+|+.
T Consensus 49 -~~~~~~~~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~w~~ 98 (108)
T PRK00162 49 -GAFMRQADFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEAWRR 98 (108)
T ss_pred -HHHHHhcCCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHHHHh
Confidence 11234467899999999999999999999999999999999999999975
No 8
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.89 E-value=9.6e-23 Score=139.42 Aligned_cols=92 Identities=20% Similarity=0.279 Sum_probs=76.5
Q ss_pred eCHHHHHHHhhcC--CeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHH
Q 030411 51 VNAEEAKNLIAVE--RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQ 128 (178)
Q Consensus 51 Is~~e~~~~l~~~--~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (178)
|+++++.++++++ +.++||||++.||..||||||+|+|+..+..
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~~l~~---------------------------------- 46 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQ---------------------------------- 46 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHHHHHH----------------------------------
Confidence 6889999999764 5789999999999999999999999864321
Q ss_pred HHHhcC-CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 129 SVKSQF-SPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 129 ~~~~~~-~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
...... .++++||+||.+|.+|..++..|...||+ |++|+||+.+|+.
T Consensus 47 ~~~~~~~~~~~~iv~~c~~G~rs~~aa~~L~~~G~~-v~~l~GG~~~W~~ 95 (95)
T cd01534 47 ETDHFAPVRGARIVLADDDGVRADMTASWLAQMGWE-VYVLEGGLAAALA 95 (95)
T ss_pred HHHHhcccCCCeEEEECCCCChHHHHHHHHHHcCCE-EEEecCcHHHhcC
Confidence 000111 24678999999999999999999999999 9999999999974
No 9
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.89 E-value=4.7e-23 Score=148.55 Aligned_cols=123 Identities=21% Similarity=0.418 Sum_probs=82.5
Q ss_pred eCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCC-hHHHHH
Q 030411 51 VNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN-PEFVQS 129 (178)
Q Consensus 51 Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 129 (178)
||++|+.++++ ++.+|||||++.||..||||||+|+|+..+........+.++.+... +...+.....+. +++...
T Consensus 1 ~s~~el~~~l~-~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 77 (128)
T cd01520 1 ITAEDLLALRK-ADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREA--AIELGLELVSGKLKRILNE 77 (128)
T ss_pred CCHHHHHHHHh-cCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHH--HHHHHHHHHhhhHHHHHHH
Confidence 68999999997 67899999999999999999999999964421100000000000000 000000000001 123332
Q ss_pred HH-hcCCCCCeEEEEcC-CChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 130 VK-SQFSPESKLLVVCQ-EGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 130 ~~-~~~~~~~~iviyC~-~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
.. ..++++++||+||+ +|.||..+++.|+.+|| +|++|+||+.+|++
T Consensus 78 ~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 78 AWEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred HHHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 22 35789999999997 68999999999999999 59999999999974
No 10
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.89 E-value=1.1e-22 Score=138.83 Aligned_cols=93 Identities=27% Similarity=0.445 Sum_probs=81.5
Q ss_pred eeCHHHHHHHhhc-CCeEEEeeCChhhhhh--ccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHH
Q 030411 50 YVNAEEAKNLIAV-ERYAVLDVRDNSQYNR--AHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (178)
Q Consensus 50 ~Is~~e~~~~l~~-~~~~lIDvR~~~e~~~--ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (178)
.|+++++.+++++ .+.+|||+|++.||.. +|||||+|+|+..+.
T Consensus 1 ~i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~--------------------------------- 47 (96)
T cd01444 1 RISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDEDSLD--------------------------------- 47 (96)
T ss_pred CcCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHHHHH---------------------------------
Confidence 3789999998876 4689999999999999 999999999987431
Q ss_pred HHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 127 VQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 127 ~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
.....++++++||+||.+|.+|..+++.|+..||++|++|+||+.+|+.
T Consensus 48 --~~~~~~~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~~w~~ 96 (96)
T cd01444 48 --DWLGDLDRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFEAWRR 96 (96)
T ss_pred --HHHhhcCCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHHHhcC
Confidence 1234467899999999999999999999999999999999999999974
No 11
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.89 E-value=6.1e-23 Score=141.21 Aligned_cols=93 Identities=20% Similarity=0.371 Sum_probs=81.3
Q ss_pred eeeCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHH
Q 030411 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQ 128 (178)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (178)
+.|+++++.++++++ .+|||+|+++||..+|||||+|+|+..+...
T Consensus 2 ~~i~~~el~~~~~~~-~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~--------------------------------- 47 (99)
T cd01527 2 TTISPNDACELLAQG-AVLVDIREPDEYLRERIPGARLVPLSQLESE--------------------------------- 47 (99)
T ss_pred CccCHHHHHHHHHCC-CEEEECCCHHHHHhCcCCCCEECChhHhccc---------------------------------
Confidence 568999999998865 8999999999999999999999998754320
Q ss_pred HHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 129 SVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 129 ~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
...++++++||+||++|.+|..++..|.+.||+++++|+||+.+|+.
T Consensus 48 --~~~~~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~~W~~ 94 (99)
T cd01527 48 --GLPLVGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLDAWKA 94 (99)
T ss_pred --ccCCCCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHHHHHH
Confidence 11256789999999999999999999999999999999999999974
No 12
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.88 E-value=7.5e-23 Score=146.24 Aligned_cols=108 Identities=22% Similarity=0.357 Sum_probs=86.0
Q ss_pred ccCceeeCHHHHHHHhhc-CCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCC
Q 030411 45 RADVNYVNAEEAKNLIAV-ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN 123 (178)
Q Consensus 45 ~~~~~~Is~~e~~~~l~~-~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 123 (178)
.+....|+++++.+++++ .+.+|||||++.||..+|||||+|+|+..+..... .+.
T Consensus 4 ~~~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~~~--~~~--------------------- 60 (122)
T cd01526 4 LSPEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSKAA--ELK--------------------- 60 (122)
T ss_pred CCcccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhhhh--hhh---------------------
Confidence 446678999999999976 57889999999999999999999999876532110 000
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCC-ceEEEeccccccccC
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGF-QNIACITSGLQTVKP 177 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~-~~v~~l~GG~~~w~~ 177 (178)
.. ......++++++||+||++|.+|..++..|...|| +++++|+||+.+|+.
T Consensus 61 -~~-~~~~~~~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~ 113 (122)
T cd01526 61 -SL-QELPLDNDKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWAD 113 (122)
T ss_pred -hh-hhcccccCCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHHHHH
Confidence 00 00112357889999999999999999999999999 799999999999974
No 13
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.88 E-value=1.2e-22 Score=140.95 Aligned_cols=103 Identities=17% Similarity=0.320 Sum_probs=79.1
Q ss_pred eCHHHHHHHhhcC--CeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHH
Q 030411 51 VNAEEAKNLIAVE--RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQ 128 (178)
Q Consensus 51 Is~~e~~~~l~~~--~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (178)
|+++|+.++++++ +++|||||++.||..||||||+|+|+..+..... . .... +....+.
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~--~----------------~~~~-~~~~~~~ 61 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEG--E----------------LEQL-PTVPRLE 61 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhccccc--c----------------cccc-cchHHHH
Confidence 6899999999753 6899999999999999999999999875421100 0 0000 0111111
Q ss_pred HHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 129 SVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 129 ~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
. ..+++||+||.+|.+|..+++.|+..||++|++|+||+.+||.
T Consensus 62 ~-----~~~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~a~~~ 105 (105)
T cd01525 62 N-----YKGKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGINALKP 105 (105)
T ss_pred h-----hcCCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHHHhcC
Confidence 1 2478899999999999999999999999999999999999974
No 14
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.88 E-value=1.5e-22 Score=139.90 Aligned_cols=96 Identities=22% Similarity=0.374 Sum_probs=80.2
Q ss_pred eeCHHHHHHHhhcC--CeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHH
Q 030411 50 YVNAEEAKNLIAVE--RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFV 127 (178)
Q Consensus 50 ~Is~~e~~~~l~~~--~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (178)
.|+++++.++++.+ +.+|||+|+++||..+|||||+|+|+..+.. +.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~~-------------------------------~~ 49 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMSEIPE-------------------------------RS 49 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHHHHHH-------------------------------HH
Confidence 37899999999864 5789999999999999999999999875421 11
Q ss_pred HHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 128 QSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 128 ~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
+.. ...+++++||+||++|.+|..++..|.+.||+++++|+||+.+|++
T Consensus 50 ~~~-~~~~~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~w~~ 98 (101)
T cd01528 50 KEL-DSDNPDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDAWSL 98 (101)
T ss_pred HHh-cccCCCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHHHhh
Confidence 111 1124688999999999999999999999999999999999999975
No 15
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.88 E-value=2.3e-22 Score=143.71 Aligned_cols=99 Identities=18% Similarity=0.294 Sum_probs=79.9
Q ss_pred eeeCHHHHHHHhhcC------CeEEEeeCChhhhhhccCCCeEEeccc-ccccCCcchhhhhhcccccccccccCCCCCC
Q 030411 49 NYVNAEEAKNLIAVE------RYAVLDVRDNSQYNRAHIKSSYHVPLF-IENQDNDLGTIIKRTVHNNFSGLFFGLPFTK 121 (178)
Q Consensus 49 ~~Is~~e~~~~l~~~------~~~lIDvR~~~e~~~ghIpgAvnip~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 121 (178)
..|+++++.++++++ +++|||||++.||..||||||+|+|.. .+..
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~~l~~--------------------------- 54 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEE--------------------------- 54 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHHHHHH---------------------------
Confidence 469999999999753 689999999999999999999999985 2211
Q ss_pred CChHHHHHH-HhcCCCCCeEEEEcC-CChhHHHHHHHHHHc------------CCceEEEeccccccccC
Q 030411 122 QNPEFVQSV-KSQFSPESKLLVVCQ-EGLRSAAAANKLEEA------------GFQNIACITSGLQTVKP 177 (178)
Q Consensus 122 ~~~~~~~~~-~~~~~~~~~iviyC~-~g~rs~~aa~~L~~~------------G~~~v~~l~GG~~~w~~ 177 (178)
.+.+.. ...++++++||+||. +|.||..+++.|+.. ||++|++|+||+.+|-+
T Consensus 55 ---~~~~~~~~~~~~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~~ 121 (121)
T cd01530 55 ---FFLDKPGVASKKKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFFE 121 (121)
T ss_pred ---HHHHhhcccccCCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhcC
Confidence 010000 012578999999997 999999999999985 99999999999999853
No 16
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.88 E-value=4.2e-22 Score=138.99 Aligned_cols=107 Identities=25% Similarity=0.483 Sum_probs=82.0
Q ss_pred CHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHHHHH
Q 030411 52 NAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVK 131 (178)
Q Consensus 52 s~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (178)
||+|+.+++++++++|||+|++.+|..||||||+|+|+..+...... ... ...........
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~-~~~------------------~~~~~~~~~~~ 61 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPS-LSE------------------DKLDEFLKELG 61 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSB-CHH------------------HHHHHHHHHHT
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCcccccccccccccc-ccc------------------ccccccccccc
Confidence 68999999977799999999999999999999999999754110000 000 00123344444
Q ss_pred hcCCCCCeEEEEcCCChhHHHHHHH-----HHHcCCceEEEeccccccccC
Q 030411 132 SQFSPESKLLVVCQEGLRSAAAANK-----LEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 132 ~~~~~~~~iviyC~~g~rs~~aa~~-----L~~~G~~~v~~l~GG~~~w~~ 177 (178)
..++++++||+||.+|.++..++.. |...||++|++|+||+.+|++
T Consensus 62 ~~~~~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~ 112 (113)
T PF00581_consen 62 KKIDKDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEAWKA 112 (113)
T ss_dssp HGSTTTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHH
T ss_pred ccccccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHHHhc
Confidence 5578889999999988888877766 889999999999999999975
No 17
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.88 E-value=2.4e-22 Score=136.15 Aligned_cols=89 Identities=27% Similarity=0.480 Sum_probs=77.5
Q ss_pred eCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHHHH
Q 030411 51 VNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSV 130 (178)
Q Consensus 51 Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (178)
++++++.++++ ++.++||+|++++|..+|||||+|+|..++. ..
T Consensus 1 ~~~~e~~~~~~-~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~-----------------------------------~~ 44 (90)
T cd01524 1 VQWHELDNYRA-DGVTLIDVRTPQEFEKGHIKGAINIPLDELR-----------------------------------DR 44 (90)
T ss_pred CCHHHHHHHhc-CCCEEEECCCHHHHhcCCCCCCEeCCHHHHH-----------------------------------HH
Confidence 47899999884 6778999999999999999999999986431 12
Q ss_pred HhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEecccccccc
Q 030411 131 KSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVK 176 (178)
Q Consensus 131 ~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~ 176 (178)
...++++++||+||++|.++..++..|+..|| ++++|+||+.+|+
T Consensus 45 ~~~~~~~~~vvl~c~~g~~a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 45 LNELPKDKEIIVYCAVGLRGYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred HHhcCCCCcEEEEcCCChhHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 33467889999999999999999999999999 8999999999997
No 18
>PLN02160 thiosulfate sulfurtransferase
Probab=99.88 E-value=3.1e-22 Score=145.78 Aligned_cols=107 Identities=28% Similarity=0.499 Sum_probs=86.7
Q ss_pred CceeeCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCe--EEecccccccCCcchhhhhhcccccccccccCCCCCCCCh
Q 030411 47 DVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSS--YHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNP 124 (178)
Q Consensus 47 ~~~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgA--vnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 124 (178)
.+..|+++++.+++++ +.+|||||++.||..|||||| +|+|+..+.... ...++
T Consensus 13 ~~~~i~~~e~~~~~~~-~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~-----------------------~l~~~ 68 (136)
T PLN02160 13 EVVSVDVSQAKTLLQS-GHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQG-----------------------RVKNQ 68 (136)
T ss_pred eeeEeCHHHHHHHHhC-CCEEEECCCHHHHhcCCCCCcceecccchhcCccc-----------------------ccCCH
Confidence 5788999999999875 468999999999999999999 899975432110 01123
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
++.......++++++||+||.+|.||..++..|...||++|++|+||+.+|++
T Consensus 69 ~~~~~~~~~~~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~ 121 (136)
T PLN02160 69 EFLEQVSSLLNPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAWVD 121 (136)
T ss_pred HHHHHHHhccCCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHHHhh
Confidence 44444444457889999999999999999999999999999999999999975
No 19
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.88 E-value=1.8e-22 Score=142.87 Aligned_cols=105 Identities=19% Similarity=0.319 Sum_probs=85.1
Q ss_pred eCHHHHHHHhhcCCeEEEeeCChhhhhh-----------ccCCCeEEecccccccCCcchhhhhhcccccccccccCCCC
Q 030411 51 VNAEEAKNLIAVERYAVLDVRDNSQYNR-----------AHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPF 119 (178)
Q Consensus 51 Is~~e~~~~l~~~~~~lIDvR~~~e~~~-----------ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 119 (178)
++++++.+++++++++|||+|++.||.. ||||||+|+|+..+... ..
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~----------------------~~ 58 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDE----------------------DG 58 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCC----------------------CC
Confidence 5789999998766789999999999987 99999999999754321 01
Q ss_pred CCCChHHHHHHHhc--CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 120 TKQNPEFVQSVKSQ--FSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 120 ~~~~~~~~~~~~~~--~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
..++++.+...... ++++++||+||++|.+|..+++.|+.+||+++++|+||+.+|+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 118 (118)
T cd01449 59 TFKSPEELRALFAALGITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWGS 118 (118)
T ss_pred CcCCHHHHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence 12334444444443 56889999999999999999999999999999999999999974
No 20
>PRK01415 hypothetical protein; Validated
Probab=99.87 E-value=5.3e-22 Score=156.85 Aligned_cols=131 Identities=15% Similarity=0.226 Sum_probs=102.7
Q ss_pred CccccccceeeeeecCCcccCCCcccccceeeccCceeeCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEeccccc
Q 030411 13 SRSKLRTTWLQFETHPGRKVSGKSICRRNLKIRADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIE 92 (178)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~ 92 (178)
+..+|.+..+++.- .+++-+.+.- ......-+.|+|+++.++++++++++||||++.||+.||||||+|+|...+
T Consensus 81 ~~~~F~~l~vr~k~---eiV~~g~~~~--~~~~~~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f 155 (247)
T PRK01415 81 DVHPFQKLKVRLKK---EIVAMNVDDL--NVDLFKGEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKTF 155 (247)
T ss_pred cCCCCCccEEEeec---eEEecCCCCC--CccccCccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHHH
Confidence 34568888887777 6666554321 122234578999999999998899999999999999999999999998755
Q ss_pred ccCCcchhhhhhcccccccccccCCCCCCCChHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEecccc
Q 030411 93 NQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGL 172 (178)
Q Consensus 93 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 172 (178)
.+. +++++. ...++++++|++||.+|.||..++..|++.||++|+.|+||+
T Consensus 156 ~e~----------------------------~~~~~~-~~~~~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi 206 (247)
T PRK01415 156 KQF----------------------------PAWVQQ-NQELLKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGI 206 (247)
T ss_pred hhh----------------------------HHHHhh-hhhhcCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHH
Confidence 321 111211 133578899999999999999999999999999999999999
Q ss_pred ccccC
Q 030411 173 QTVKP 177 (178)
Q Consensus 173 ~~w~~ 177 (178)
.+|.+
T Consensus 207 ~~w~~ 211 (247)
T PRK01415 207 LQYLE 211 (247)
T ss_pred HHHHH
Confidence 99964
No 21
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.87 E-value=4.9e-22 Score=137.19 Aligned_cols=100 Identities=24% Similarity=0.441 Sum_probs=79.7
Q ss_pred eCHHHHHHHhhcCCeEEEeeCChhhh-hhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHHH
Q 030411 51 VNAEEAKNLIAVERYAVLDVRDNSQY-NRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQS 129 (178)
Q Consensus 51 Is~~e~~~~l~~~~~~lIDvR~~~e~-~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (178)
|+++++.+++++++.+|||+|++.+| ..||||||+|+|+..+....+ ....+
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~~~~------------------------~~~~~--- 53 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWAD------------------------PDSPY--- 53 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhhhcC------------------------ccccc---
Confidence 58899999998778899999999998 569999999999865421100 00000
Q ss_pred HHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 130 VKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 130 ~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
....++++++||+||.+|.+|..+++.|...||++|++|+||+.+|..
T Consensus 54 ~~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~ 101 (103)
T cd01447 54 HKPAFAEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKDWKE 101 (103)
T ss_pred cccCCCCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHHHHhh
Confidence 011357889999999999999999999999999999999999999964
No 22
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.87 E-value=9.4e-22 Score=134.68 Aligned_cols=87 Identities=20% Similarity=0.250 Sum_probs=71.8
Q ss_pred cCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHHHHHhcCCCCCeEE
Q 030411 62 VERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQFSPESKLL 141 (178)
Q Consensus 62 ~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 141 (178)
+++.+|||||++.+|+.+|||||+|+|+..+.. ..+.++. ...++++++||
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~~----------------------------~~~~~~~-~~~~~~~~~iv 60 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPGKRSIPGAALVL----------------------------RSQELQA-LEAPGRATRYV 60 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCCcEeCCHHHhcC----------------------------CHHHHHH-hhcCCCCCCEE
Confidence 356899999999999999999999999864421 1122222 33357889999
Q ss_pred EEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 142 VVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 142 iyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
+||++|.+|..+++.|+..||+||++|+||+.+|+.
T Consensus 61 v~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 96 (96)
T cd01529 61 LTCDGSLLARFAAQELLALGGKPVALLDGGTSAWVA 96 (96)
T ss_pred EEeCChHHHHHHHHHHHHcCCCCEEEeCCCHHHhcC
Confidence 999999999999999999999999999999999974
No 23
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.86 E-value=2e-21 Score=138.43 Aligned_cols=109 Identities=24% Similarity=0.269 Sum_probs=86.0
Q ss_pred eCHHHHHHHhhcCCeEEEeeCCh-------hhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCC
Q 030411 51 VNAEEAKNLIAVERYAVLDVRDN-------SQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN 123 (178)
Q Consensus 51 Is~~e~~~~l~~~~~~lIDvR~~-------~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 123 (178)
|+++++.+++++++.+|||+|++ .+|..+|||||+|+|+.++.... .......++
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~------------------~~~~~~~~~ 63 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDK------------------SPGPHMLPS 63 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccC------------------CCCCCCCCC
Confidence 78999999998777899999999 99999999999999987653210 011223333
Q ss_pred h-HHHHHHHh-cCCCCCeEEEEcCC-ChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 124 P-EFVQSVKS-QFSPESKLLVVCQE-GLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 124 ~-~~~~~~~~-~~~~~~~iviyC~~-g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
. ++.+.... .++++++||+||.+ |.++..+++.|+..||++|++|+||+.+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~ 120 (122)
T cd01448 64 PEEFAELLGSLGISNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKA 120 (122)
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHh
Confidence 3 34333322 36789999999998 5899999999999999999999999999975
No 24
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.85 E-value=3e-21 Score=154.15 Aligned_cols=105 Identities=16% Similarity=0.249 Sum_probs=85.6
Q ss_pred eccCceeeCHHHHHHHhhcC------CeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCC
Q 030411 44 IRADVNYVNAEEAKNLIAVE------RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGL 117 (178)
Q Consensus 44 ~~~~~~~Is~~e~~~~l~~~------~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 117 (178)
.....+.|+++++.++++++ +.+|||||++.||+.||||||+|+|+.++.+.
T Consensus 105 ~~~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~~---------------------- 162 (257)
T PRK05320 105 ELGRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTEF---------------------- 162 (257)
T ss_pred ccCcCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhhh----------------------
Confidence 34456789999999988652 47899999999999999999999999755321
Q ss_pred CCCCCChHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 118 PFTKQNPEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
+..+......+ ++++|++||.+|.||..++..|++.||+||++|+||+.+|.+
T Consensus 163 ------~~~l~~~~~~~-kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~ 215 (257)
T PRK05320 163 ------PEALAAHRADL-AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFE 215 (257)
T ss_pred ------HHHHHhhhhhc-CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHH
Confidence 11222222233 788999999999999999999999999999999999999964
No 25
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.85 E-value=4.5e-21 Score=134.58 Aligned_cols=94 Identities=21% Similarity=0.317 Sum_probs=80.0
Q ss_pred eeeCHHHHHHHhhcC--CeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHH
Q 030411 49 NYVNAEEAKNLIAVE--RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (178)
Q Consensus 49 ~~Is~~e~~~~l~~~--~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (178)
..|+++++.+++.++ +.+|||+|++.+|..||||||+|+|...+.
T Consensus 8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~--------------------------------- 54 (110)
T cd01521 8 FETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHREIC--------------------------------- 54 (110)
T ss_pred eecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHHHhh---------------------------------
Confidence 579999999999753 589999999999999999999999987432
Q ss_pred HHHHHhcCCCCCeEEEEcCCC--hhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 127 VQSVKSQFSPESKLLVVCQEG--LRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 127 ~~~~~~~~~~~~~iviyC~~g--~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
......++++++||+||++| .+|..+++.|+..||+ +++|+||+.+|+.
T Consensus 55 -~~~~~~i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~ 105 (110)
T cd01521 55 -ENATAKLDKEKLFVVYCDGPGCNGATKAALKLAELGFP-VKEMIGGLDWWKR 105 (110)
T ss_pred -hHhhhcCCCCCeEEEEECCCCCchHHHHHHHHHHcCCe-EEEecCCHHHHHH
Confidence 11134567899999999987 4899999999999995 9999999999974
No 26
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.85 E-value=7.9e-21 Score=138.70 Aligned_cols=109 Identities=12% Similarity=0.133 Sum_probs=85.4
Q ss_pred eCHHHHHHHhh----cCCeEEEeeCCh--------hhhhh------------ccCCCeEEecccccccCCcchhhhhhcc
Q 030411 51 VNAEEAKNLIA----VERYAVLDVRDN--------SQYNR------------AHIKSSYHVPLFIENQDNDLGTIIKRTV 106 (178)
Q Consensus 51 Is~~e~~~~l~----~~~~~lIDvR~~--------~e~~~------------ghIpgAvnip~~~~~~~~~~~~l~~~~~ 106 (178)
|+++++.+.++ +++.+|||+|.. ++|.+ ||||||+|+|+..+.....
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~--------- 71 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAG--------- 71 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCC---------
Confidence 58899999997 467999999987 88988 9999999999865422100
Q ss_pred cccccccccCCCCCCCChHHHHHHHhc--CCCCCeEEEEcCC---ChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 107 HNNFSGLFFGLPFTKQNPEFVQSVKSQ--FSPESKLLVVCQE---GLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iviyC~~---g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
......++++.++..+.. ++++++||+||.+ |..+.++++.|+.+|++||++|+||+.+|+.
T Consensus 72 ---------~~~~~~p~~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~~ 138 (138)
T cd01445 72 ---------FEESMEPSEAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWFH 138 (138)
T ss_pred ---------CCCCCCCCHHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhhC
Confidence 122334444444444443 7889999999986 7889999999999999999999999999973
No 27
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.85 E-value=4.1e-21 Score=130.72 Aligned_cols=86 Identities=24% Similarity=0.398 Sum_probs=70.3
Q ss_pred HHhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHHHHHhcC-CC
Q 030411 58 NLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQF-SP 136 (178)
Q Consensus 58 ~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 136 (178)
.++++++++|||+|++.||..+|||||+|+|...+.. .....+ ++
T Consensus 4 ~~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~----------------------------------~~~~~~~~~ 49 (92)
T cd01532 4 ALLAREEIALIDVREEDPFAQSHPLWAANLPLSRLEL----------------------------------DAWVRIPRR 49 (92)
T ss_pred HhhcCCCeEEEECCCHHHHhhCCcccCeeCCHHHHHh----------------------------------hhHhhCCCC
Confidence 3455678899999999999999999999999864311 011122 35
Q ss_pred CCeEEEEcCCChh--HHHHHHHHHHcCCceEEEeccccccccC
Q 030411 137 ESKLLVVCQEGLR--SAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 137 ~~~iviyC~~g~r--s~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
+++||+||.+|.+ |..+++.|++.||++|++|+||+.+|++
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence 8899999999876 6899999999999999999999999974
No 28
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.84 E-value=7.7e-21 Score=142.25 Aligned_cols=108 Identities=18% Similarity=0.177 Sum_probs=81.9
Q ss_pred cCceeeCHHHHHHHhhcCCeEEEeeCChh----hhhh---------ccCCCeEEecccccccCCcchhhhhhcccccccc
Q 030411 46 ADVNYVNAEEAKNLIAVERYAVLDVRDNS----QYNR---------AHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSG 112 (178)
Q Consensus 46 ~~~~~Is~~e~~~~l~~~~~~lIDvR~~~----e~~~---------ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~ 112 (178)
.....|+++|+.+++++++.+|||||+++ ||.. +|||||+|+|+..+.....
T Consensus 33 ~~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~l~~--------------- 97 (162)
T TIGR03865 33 KGARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGNLAP--------------- 97 (162)
T ss_pred CCccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCCCCC---------------
Confidence 35678999999999988788999999865 4543 4999999999642211000
Q ss_pred cccCCCCCCCC-hHHHHHHHhc--CCCCCeEEEEcCCCh-hHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 113 LFFGLPFTKQN-PEFVQSVKSQ--FSPESKLLVVCQEGL-RSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 113 ~~~~~~~~~~~-~~~~~~~~~~--~~~~~~iviyC~~g~-rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
+. +.+.+.+... .+++++||+||.+|. +|..+++.|+.+||+||++|+||+.+|++
T Consensus 98 ---------~~~~~~~~~l~~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~ 157 (162)
T TIGR03865 98 ---------AWQAYFRRGLERATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQA 157 (162)
T ss_pred ---------chhHHHHHHHHHhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHH
Confidence 01 1233332222 368999999999986 89999999999999999999999999975
No 29
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.84 E-value=3.6e-21 Score=135.66 Aligned_cols=98 Identities=23% Similarity=0.396 Sum_probs=77.7
Q ss_pred ceeeCHHHHHHHhhc--CCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChH
Q 030411 48 VNYVNAEEAKNLIAV--ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPE 125 (178)
Q Consensus 48 ~~~Is~~e~~~~l~~--~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 125 (178)
++.|+++++.+++.+ ++.+|||||++ ||..+|||||+|+|+..+...
T Consensus 1 ~~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~~------------------------------ 49 (113)
T cd01531 1 VSYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKAQ------------------------------ 49 (113)
T ss_pred CCcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHhhC------------------------------
Confidence 367999999999876 35789999999 999999999999999855321
Q ss_pred HHHHHHhc--CCCCCeEEEEcC-CChhHHHHHHHHHH--------cCCceEEEeccccccccC
Q 030411 126 FVQSVKSQ--FSPESKLLVVCQ-EGLRSAAAANKLEE--------AGFQNIACITSGLQTVKP 177 (178)
Q Consensus 126 ~~~~~~~~--~~~~~~iviyC~-~g~rs~~aa~~L~~--------~G~~~v~~l~GG~~~w~~ 177 (178)
+...... .+++++||+||. +|.|+..++..|.+ .|++||++|+||+.+|++
T Consensus 50 -~~~~~~~~~~~~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~ 111 (113)
T cd01531 50 -LNQLVQLLSGSKKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWES 111 (113)
T ss_pred -HHHHHHHHhcCCCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHh
Confidence 1111111 256789999998 67888888887654 499999999999999975
No 30
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.83 E-value=1.5e-20 Score=125.76 Aligned_cols=88 Identities=30% Similarity=0.458 Sum_probs=74.3
Q ss_pred HHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHHHHHhcCC
Q 030411 56 AKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQFS 135 (178)
Q Consensus 56 ~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (178)
+.+++++++.+|||+|++.+|..+|||||+|+|+..+... ......+
T Consensus 2 ~~~~~~~~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~~---------------------------------~~~~~~~ 48 (89)
T cd00158 2 LKELLDDEDAVLLDVREPEEYAAGHIPGAINIPLSELEER---------------------------------AALLELD 48 (89)
T ss_pred hHHHhcCCCeEEEECCCHHHHhccccCCCEecchHHHhhH---------------------------------HHhhccC
Confidence 3455556689999999999999999999999998743210 0133457
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEecccccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVK 176 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~ 176 (178)
++++||+||++|.++..+++.|+..||+++++|+||+.+|+
T Consensus 49 ~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 49 KDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChhhcC
Confidence 89999999999999999999999999999999999999995
No 31
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.83 E-value=2.6e-20 Score=126.54 Aligned_cols=94 Identities=28% Similarity=0.403 Sum_probs=73.7
Q ss_pred cCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHHHH-HhcCCCCCeE
Q 030411 62 VERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSV-KSQFSPESKL 140 (178)
Q Consensus 62 ~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i 140 (178)
+++++|||+|++.||..+|||||+|+|+..+....... ....+.... ....+++++|
T Consensus 2 ~~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~i 59 (100)
T smart00450 2 DEKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGEL----------------------DILEFEELLKRLGLDKDKPV 59 (100)
T ss_pred CCCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCc----------------------CHHHHHHHHHHcCCCCCCeE
Confidence 35789999999999999999999999998654321100 001122222 2336788999
Q ss_pred EEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 141 LVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 141 viyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
|+||.+|.++..+++.|+..||++|++|+||+.+|++
T Consensus 60 v~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~~w~~ 96 (100)
T smart00450 60 VVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYKEWSA 96 (100)
T ss_pred EEEeCCCcHHHHHHHHHHHcCCCceEEecCCHHHHHh
Confidence 9999999999999999999999999999999999975
No 32
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.82 E-value=5.5e-20 Score=150.74 Aligned_cols=103 Identities=17% Similarity=0.348 Sum_probs=86.2
Q ss_pred cCceeeCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChH
Q 030411 46 ADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPE 125 (178)
Q Consensus 46 ~~~~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 125 (178)
.....|+++++.+++++++++|||||++.||+.||||||+|+|+..+.+. ++
T Consensus 109 ~~~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~~----------------------------~~ 160 (314)
T PRK00142 109 NVGTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFREF----------------------------PP 160 (314)
T ss_pred cCCcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhhhh----------------------------HH
Confidence 45678999999999988889999999999999999999999999765321 11
Q ss_pred HHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 126 FVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 126 ~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
.+.... ...++++||+||.+|.||..++.+|+..||++|++|+||+.+|.+
T Consensus 161 ~l~~~~-~~~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~ 211 (314)
T PRK00142 161 WVEENL-DPLKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIITYGE 211 (314)
T ss_pred HHHHhc-CCCCcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHHHHH
Confidence 111111 234789999999999999999999999999999999999999964
No 33
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.82 E-value=7.3e-20 Score=129.02 Aligned_cols=99 Identities=23% Similarity=0.348 Sum_probs=73.7
Q ss_pred eeeCHHHHHHHhhcC------CeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCC
Q 030411 49 NYVNAEEAKNLIAVE------RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQ 122 (178)
Q Consensus 49 ~~Is~~e~~~~l~~~------~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 122 (178)
+.|+++++.++++++ +.+|||||++ ||..+|||||+|+|+..+... +
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~~-----~--------------------- 54 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQT-----L--------------------- 54 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHHH-----H---------------------
Confidence 578999999999864 5889999999 999999999999998754210 0
Q ss_pred ChHHHHHHHhcCCCCCeEEEEcCC-ChhHHHHHHHHH----HcCC--ceEEEeccccccccC
Q 030411 123 NPEFVQSVKSQFSPESKLLVVCQE-GLRSAAAANKLE----EAGF--QNIACITSGLQTVKP 177 (178)
Q Consensus 123 ~~~~~~~~~~~~~~~~~iviyC~~-g~rs~~aa~~L~----~~G~--~~v~~l~GG~~~w~~ 177 (178)
.+.... .. ..+.++||+||.+ |.||..++..|. +.|| .++++|+||+.+|+.
T Consensus 55 -~~~~~~-~~-~~~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~~ 113 (113)
T cd01443 55 -PQVYAL-FS-LAGVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWYH 113 (113)
T ss_pred -HHHHHH-hh-hcCCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhcC
Confidence 011111 00 1345789999996 678888776644 3475 789999999999973
No 34
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.81 E-value=1.7e-20 Score=153.28 Aligned_cols=111 Identities=21% Similarity=0.416 Sum_probs=88.4
Q ss_pred CeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCC-hHHHHHHHhcCCCCCeEEE
Q 030411 64 RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN-PEFVQSVKSQFSPESKLLV 142 (178)
Q Consensus 64 ~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ivi 142 (178)
..+|||||++.||..||||||+|+|+...++...+++++++.+.. .+...|......+ +++++.+....+++++||+
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~--~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvv 79 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPF--AAIKLGLALVSPNLAAHVEQWRAFADGPPQPLL 79 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHH--HHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEE
Confidence 458999999999999999999999998888888888998875433 3444444444444 4455555555566667999
Q ss_pred EcC-CChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 143 VCQ-EGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 143 yC~-~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
||. +|.||..++++|...|| ++++|+||+.+|+.
T Consensus 80 yC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~ 114 (311)
T TIGR03167 80 YCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRR 114 (311)
T ss_pred EECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHH
Confidence 996 79999999999999999 59999999999974
No 35
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.81 E-value=5.8e-20 Score=152.15 Aligned_cols=122 Identities=21% Similarity=0.420 Sum_probs=91.8
Q ss_pred CHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCC-hHHHHHH
Q 030411 52 NAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN-PEFVQSV 130 (178)
Q Consensus 52 s~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 130 (178)
..+++.+++. ++.+|||||++.||..||||||+|+|+....+...+++++++.+.... ...|.....++ .+.....
T Consensus 4 ~~~~~~~~~~-~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a--~~lg~~lv~~~l~~~~~~~ 80 (345)
T PRK11784 4 DAQDFRALFL-NDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAA--IALGHALVAGNIAAHREEA 80 (345)
T ss_pred cHHHHHHHHh-CCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHH--HHhhhhhcchhHHHHHHHH
Confidence 4667777664 578999999999999999999999999877777778888887544332 22333333222 2333333
Q ss_pred HhcCC-CCCeEEEEcC-CChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 131 KSQFS-PESKLLVVCQ-EGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 131 ~~~~~-~~~~iviyC~-~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
...++ ++++||+||. +|.||..+++.|...|| ++++|+||+.+|+.
T Consensus 81 ~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~ 128 (345)
T PRK11784 81 WADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRR 128 (345)
T ss_pred HHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHH
Confidence 33333 7889999996 78999999999999999 59999999999974
No 36
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.80 E-value=2.1e-19 Score=132.23 Aligned_cols=87 Identities=16% Similarity=0.239 Sum_probs=73.0
Q ss_pred HHHHhhcC-CeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHHHHHhcC
Q 030411 56 AKNLIAVE-RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQF 134 (178)
Q Consensus 56 ~~~~l~~~-~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (178)
+.+++..+ +++|||||++.+|..+|||||+|+|...+ ......+
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~~~l-----------------------------------~~~l~~l 46 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLRAQL-----------------------------------AQALEKL 46 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCHHHH-----------------------------------HHHHHhc
Confidence 34555433 58999999999999999999999987532 2224446
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 135 SPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 135 ~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
+++.+||+||.+|.+|..+++.|+..||++|++|+||+.+|+.
T Consensus 47 ~~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~aW~~ 89 (145)
T cd01535 47 PAAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTAAWIA 89 (145)
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHHHHHH
Confidence 6788999999999999999999999999999999999999975
No 37
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.79 E-value=4e-19 Score=143.86 Aligned_cols=111 Identities=18% Similarity=0.233 Sum_probs=87.0
Q ss_pred eeeCHHHHHHHhhcCCeEEEeeCC----------hhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCC
Q 030411 49 NYVNAEEAKNLIAVERYAVLDVRD----------NSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLP 118 (178)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDvR~----------~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 118 (178)
..|+++++.+++++++++|||+|+ +.+|..||||||+|+|+..+.... ...+
T Consensus 5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~------------------~~~~ 66 (281)
T PRK11493 5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHT------------------SPLP 66 (281)
T ss_pred cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCC------------------CCCC
Confidence 358999999999888899999996 688999999999999986543211 0122
Q ss_pred CCCCChHHHHHHHhc--CCCCCeEEEEcCCChh-HHHHHHHHHHcCCceEEEeccccccccC
Q 030411 119 FTKQNPEFVQSVKSQ--FSPESKLLVVCQEGLR-SAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 119 ~~~~~~~~~~~~~~~--~~~~~~iviyC~~g~r-s~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
...+.++.++..+.. ++++++||+||.++.+ +.++++.|...||+||++|+||+.+|++
T Consensus 67 ~~~~~~~~~~~~~~~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~ 128 (281)
T PRK11493 67 HMMPRPETFAVAMRELGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQR 128 (281)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHH
Confidence 334444444554554 6889999999998764 6688899999999999999999999964
No 38
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.79 E-value=3.9e-19 Score=149.27 Aligned_cols=95 Identities=21% Similarity=0.407 Sum_probs=81.4
Q ss_pred ceeeCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHH
Q 030411 48 VNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFV 127 (178)
Q Consensus 48 ~~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (178)
++.|+++++.+++++ +.+|||||+++||..||||||+|+|+..+.+
T Consensus 2 v~~is~~el~~~l~~-~~~ivDvR~~~e~~~ghIpgAi~ip~~~l~~--------------------------------- 47 (376)
T PRK08762 2 IREISPAEARARAAQ-GAVLIDVREAHERASGQAEGALRIPRGFLEL--------------------------------- 47 (376)
T ss_pred CceeCHHHHHHHHhC-CCEEEECCCHHHHhCCcCCCCEECCHHHHHH---------------------------------
Confidence 567999999999975 5899999999999999999999999864321
Q ss_pred HHHHhc-CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 128 QSVKSQ-FSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 128 ~~~~~~-~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
..... .+++++||+||++|.+|..+++.|+..||+||++|+||+.+|++
T Consensus 48 -~~~~~~~~~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~ 97 (376)
T PRK08762 48 -RIETHLPDRDREIVLICASGTRSAHAAATLRELGYTRVASVAGGFSAWKD 97 (376)
T ss_pred -HHhhhcCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcHHHHHh
Confidence 11111 26789999999999999999999999999999999999999974
No 39
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.79 E-value=6.4e-19 Score=122.02 Aligned_cols=79 Identities=20% Similarity=0.341 Sum_probs=66.3
Q ss_pred CCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHHHHHhc--CCCCCeE
Q 030411 63 ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQ--FSPESKL 140 (178)
Q Consensus 63 ~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i 140 (178)
....+||+|+++||.+||||||+|+|+.++.. .... .+++++|
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAinip~~~l~~-----------------------------------~l~~~~~~~~~~v 61 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAINIPLKEIKE-----------------------------------HIATAVPDKNDTV 61 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCEECCHHHHHH-----------------------------------HHHHhCCCCCCeE
Confidence 35679999999999999999999999874321 1121 2467889
Q ss_pred EEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 141 LVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 141 viyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
|+||++|.+|..++..|...||++++++ ||+.+|..
T Consensus 62 vlyC~~G~rS~~aa~~L~~~G~~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 62 KLYCNAGRQSGMAKDILLDMGYTHAENA-GGIKDIAM 97 (101)
T ss_pred EEEeCCCHHHHHHHHHHHHcCCCeEEec-CCHHHhhh
Confidence 9999999999999999999999999885 99999964
No 40
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.78 E-value=7.1e-19 Score=122.36 Aligned_cols=77 Identities=22% Similarity=0.389 Sum_probs=65.1
Q ss_pred CeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHHHHHhc--CCCCCeEE
Q 030411 64 RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQ--FSPESKLL 141 (178)
Q Consensus 64 ~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iv 141 (178)
.-++||+|+++||..+|||||+|+|+.++. + ..+. .+++++||
T Consensus 20 ~~~lIDvR~~~ef~~ghIpGAiniP~~~l~----------------------------------~-~l~~l~~~~~~~IV 64 (104)
T PRK10287 20 AEHWIDVRVPEQYQQEHVQGAINIPLKEVK----------------------------------E-RIATAVPDKNDTVK 64 (104)
T ss_pred CCEEEECCCHHHHhcCCCCccEECCHHHHH----------------------------------H-HHHhcCCCCCCeEE
Confidence 457999999999999999999999986431 1 1222 24567899
Q ss_pred EEcCCChhHHHHHHHHHHcCCceEEEecccccccc
Q 030411 142 VVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVK 176 (178)
Q Consensus 142 iyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~ 176 (178)
+||++|.+|..++..|.+.||+++++ .||+.+|.
T Consensus 65 lyC~~G~rS~~aa~~L~~~G~~~v~~-~GG~~~~~ 98 (104)
T PRK10287 65 LYCNAGRQSGQAKEILSEMGYTHAEN-AGGLKDIA 98 (104)
T ss_pred EEeCCChHHHHHHHHHHHcCCCeEEe-cCCHHHHh
Confidence 99999999999999999999999987 69999996
No 41
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.78 E-value=5.3e-19 Score=149.14 Aligned_cols=99 Identities=21% Similarity=0.381 Sum_probs=85.0
Q ss_pred cCceeeCHHHHHHHhhcC-CeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCCh
Q 030411 46 ADVNYVNAEEAKNLIAVE-RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNP 124 (178)
Q Consensus 46 ~~~~~Is~~e~~~~l~~~-~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 124 (178)
...+.|+++|+.++++++ +.+|||||+++||..+|||||+|+|+..+..
T Consensus 284 ~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAinip~~~l~~------------------------------ 333 (392)
T PRK07878 284 AAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIPKSEILS------------------------------ 333 (392)
T ss_pred CCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEcChHHhcc------------------------------
Confidence 345789999999998754 5789999999999999999999999875421
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
....+.++++++||+||++|.+|..+++.|++.||++|++|+||+.+|+.
T Consensus 334 ---~~~~~~l~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~ 383 (392)
T PRK07878 334 ---GEALAKLPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAK 383 (392)
T ss_pred ---hhHHhhCCCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHH
Confidence 01134467899999999999999999999999999999999999999974
No 42
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.78 E-value=1.1e-18 Score=153.96 Aligned_cols=111 Identities=12% Similarity=0.158 Sum_probs=88.4
Q ss_pred eeeCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHH
Q 030411 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQ 128 (178)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (178)
..|+++|+.+++++++++|||+|++++|..||||||+|+|+....... ...+++.+..+.++
T Consensus 9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~------------------~~~~~~lp~~~~l~ 70 (610)
T PRK09629 9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGK------------------PPAPGLLPDTADLE 70 (610)
T ss_pred ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccC------------------CCCCCCCCCHHHHH
Confidence 469999999999888899999999999999999999999986421110 01223344444444
Q ss_pred HHHhc--CCCCCeEEEEcCCC-hhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 129 SVKSQ--FSPESKLLVVCQEG-LRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 129 ~~~~~--~~~~~~iviyC~~g-~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
..+.+ ++++++||+||++| .++.++++.|+.+||++|++|+||+.+|+.
T Consensus 71 ~~l~~lGI~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ 122 (610)
T PRK09629 71 QLFGELGHNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEA 122 (610)
T ss_pred HHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHH
Confidence 44444 57899999999976 578899999999999999999999999975
No 43
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.77 E-value=8.5e-19 Score=122.08 Aligned_cols=93 Identities=33% Similarity=0.531 Sum_probs=75.8
Q ss_pred CHHHHHHHhhcCCeEEEeeCChhhhhhccCCC-eEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHHHH
Q 030411 52 NAEEAKNLIAVERYAVLDVRDNSQYNRAHIKS-SYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSV 130 (178)
Q Consensus 52 s~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpg-Avnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (178)
...........++.+|||||++.||+.+|||+ ++|+|..++..... .
T Consensus 8 ~~~~~~~~~~~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~~-------------------------------~- 55 (110)
T COG0607 8 SEDEAALLLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAEN-------------------------------L- 55 (110)
T ss_pred CHHHHHHhhccCCCEEEeccChhHhhhcCCCcceeeeecccchhhhc-------------------------------c-
Confidence 33444444455689999999999999999999 99999986643110 0
Q ss_pred HhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 131 KSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 131 ~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
.. ++++++||+||.+|.||..++..|+..||++++++.||+.+|+.
T Consensus 56 ~~-~~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~~w~~ 101 (110)
T COG0607 56 LE-LPDDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGIDAWKG 101 (110)
T ss_pred cc-cCCCCeEEEEeCCCCChHHHHHHHHHcCCccccccCCcHHHHHh
Confidence 00 46899999999999999999999999999988899999999965
No 44
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.77 E-value=1.1e-18 Score=143.66 Aligned_cols=105 Identities=19% Similarity=0.231 Sum_probs=84.3
Q ss_pred eCHHHHHHHhhcCCeEEEeeCChhhh-----------hhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCC
Q 030411 51 VNAEEAKNLIAVERYAVLDVRDNSQY-----------NRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPF 119 (178)
Q Consensus 51 Is~~e~~~~l~~~~~~lIDvR~~~e~-----------~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 119 (178)
++.+++.+.+++++.+|||+|++.+| ..||||||+|+|+..+.... .
T Consensus 192 ~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~----------------------~ 249 (320)
T PLN02723 192 WTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSS----------------------Q 249 (320)
T ss_pred ecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCC----------------------C
Confidence 78899998887778899999999988 45999999999987543210 1
Q ss_pred CCCChHHHHHHHh--cCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 120 TKQNPEFVQSVKS--QFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 120 ~~~~~~~~~~~~~--~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
.....+.++.... .++++++||+||++|.+|..++..|+.+||+||++|+||+.+|..
T Consensus 250 ~~~~~~el~~~~~~~gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~ 309 (320)
T PLN02723 250 TLLPAEELKKRFEQEGISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGA 309 (320)
T ss_pred CCCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhc
Confidence 1223333444443 378899999999999999999999999999999999999999964
No 45
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.77 E-value=2.1e-18 Score=142.02 Aligned_cols=111 Identities=17% Similarity=0.171 Sum_probs=87.3
Q ss_pred eeeCHHHHHHHhhcCCeEEEeeC--------C-hhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCC
Q 030411 49 NYVNAEEAKNLIAVERYAVLDVR--------D-NSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPF 119 (178)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDvR--------~-~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 119 (178)
..|+++++.+++++++.+|||+| + ..+|..||||||+|+|+..+.... ...+.
T Consensus 22 ~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~------------------~~~~~ 83 (320)
T PLN02723 22 PVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRT------------------TDLPH 83 (320)
T ss_pred ceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCC------------------CCcCC
Confidence 57999999999987789999996 3 378999999999999987543211 11334
Q ss_pred CCCChHHHHHHHhc--CCCCCeEEEEcCCChh-HHHHHHHHHHcCCceEEEeccccccccC
Q 030411 120 TKQNPEFVQSVKSQ--FSPESKLLVVCQEGLR-SAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 120 ~~~~~~~~~~~~~~--~~~~~~iviyC~~g~r-s~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
..+.++.++..+.. ++++++||+||.+|.. +.++++.|+.+||++|++|+||+.+|++
T Consensus 84 ~lp~~~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~ 144 (320)
T PLN02723 84 MLPSEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRA 144 (320)
T ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHH
Confidence 44555555555555 5788999999987754 5688899999999999999999999964
No 46
>PRK07411 hypothetical protein; Validated
Probab=99.74 E-value=4.4e-18 Score=143.40 Aligned_cols=101 Identities=27% Similarity=0.390 Sum_probs=82.8
Q ss_pred cCceeeCHHHHHHHhhcC--CeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCC
Q 030411 46 ADVNYVNAEEAKNLIAVE--RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN 123 (178)
Q Consensus 46 ~~~~~Is~~e~~~~l~~~--~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 123 (178)
..++.|+++|+.++++++ +.+|||||++.||..||||||+|+|+.++....
T Consensus 279 ~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~~--------------------------- 331 (390)
T PRK07411 279 AEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENGP--------------------------- 331 (390)
T ss_pred cccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCEEccHHHhhccc---------------------------
Confidence 456789999999998754 578999999999999999999999997653210
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
..+. ...++++++||+||.+|.||..+++.|+..||++ +.|+||+.+|++
T Consensus 332 --~~~~-l~~l~~d~~IVvyC~~G~RS~~aa~~L~~~G~~~-~~l~GG~~~W~~ 381 (390)
T PRK07411 332 --GVEK-VKELLNGHRLIAHCKMGGRSAKALGILKEAGIEG-TNVKGGITAWSR 381 (390)
T ss_pred --chHH-HhhcCCCCeEEEECCCCHHHHHHHHHHHHcCCCe-EEecchHHHHHH
Confidence 0111 2334678999999999999999999999999985 589999999964
No 47
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.73 E-value=6.2e-18 Score=136.87 Aligned_cols=105 Identities=14% Similarity=0.211 Sum_probs=81.2
Q ss_pred eeCHHHHHHHhhcCCeEEEeeCChhhhh-----------hccCCCeEEecccccccCCcchhhhhhcccccccccccCCC
Q 030411 50 YVNAEEAKNLIAVERYAVLDVRDNSQYN-----------RAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLP 118 (178)
Q Consensus 50 ~Is~~e~~~~l~~~~~~lIDvR~~~e~~-----------~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 118 (178)
.++.+++...+++++.+|||+|+++||. .||||||+|+|+..+....
T Consensus 154 ~~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~~---------------------- 211 (281)
T PRK11493 154 VVRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREG---------------------- 211 (281)
T ss_pred eecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCCC----------------------
Confidence 3556666666666678999999999995 5999999999987653210
Q ss_pred CCCCChHHHHHHHh--cCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 119 FTKQNPEFVQSVKS--QFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 119 ~~~~~~~~~~~~~~--~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
....++-++..+. .++++++||+||++|.+|..++..|+.+||+|+++|+||+.+|..
T Consensus 212 -~~~~~~~l~~~~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~ 271 (281)
T PRK11493 212 -ELKTTDELDAIFFGRGVSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGA 271 (281)
T ss_pred -CcCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHcc
Confidence 0112233333332 368899999999999999999999999999999999999999964
No 48
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.73 E-value=7e-18 Score=140.65 Aligned_cols=97 Identities=23% Similarity=0.374 Sum_probs=80.0
Q ss_pred cCceeeCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChH
Q 030411 46 ADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPE 125 (178)
Q Consensus 46 ~~~~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 125 (178)
+....++++++.++. ++.+|||||+++||+.+|||||+|+|+.++....
T Consensus 258 ~~~~~i~~~~~~~~~--~~~~IIDVR~~~ef~~ghIpgAinip~~~l~~~~----------------------------- 306 (355)
T PRK05597 258 GFGEVLDVPRVSALP--DGVTLIDVREPSEFAAYSIPGAHNVPLSAIREGA----------------------------- 306 (355)
T ss_pred CcccccCHHHHHhcc--CCCEEEECCCHHHHccCcCCCCEEeCHHHhhhcc-----------------------------
Confidence 344578888888554 3578999999999999999999999997543210
Q ss_pred HHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 126 FVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 126 ~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
....++++++||+||++|.+|..+++.|++.||+||++|+||+.+|++
T Consensus 307 ----~~~~~~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 307 ----NPPSVSAGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred ----ccccCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 011246788999999999999999999999999999999999999975
No 49
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.5e-17 Score=133.92 Aligned_cols=106 Identities=19% Similarity=0.275 Sum_probs=87.7
Q ss_pred eeCHHHHHHHhhcCCeEEEeeCChhhhhh----------ccCCCeEEecccccccCCcchhhhhhcccccccccccCCCC
Q 030411 50 YVNAEEAKNLIAVERYAVLDVRDNSQYNR----------AHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPF 119 (178)
Q Consensus 50 ~Is~~e~~~~l~~~~~~lIDvR~~~e~~~----------ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 119 (178)
.++.++++..++....+|||+|++++|.+ ||||||+|+|+..+.+. ..
T Consensus 157 ~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~----------------------~~ 214 (285)
T COG2897 157 VVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDD----------------------GG 214 (285)
T ss_pred cCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcC----------------------CC
Confidence 46778888888878888999999999998 99999999999876541 11
Q ss_pred CCCChHHHHHHH--hcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 120 TKQNPEFVQSVK--SQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 120 ~~~~~~~~~~~~--~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
....++.+..+. ..++++++||+||.+|.+|+.....|+.+|+.+..+|+|++..|-.
T Consensus 215 ~~~~~~~~~~l~~~~gi~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~ 274 (285)
T COG2897 215 LFKSPEEIARLYADAGIDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGS 274 (285)
T ss_pred ccCcHHHHHHHHHhcCCCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhc
Confidence 222345555555 3489999999999999999999999999999988999999999954
No 50
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.73 E-value=2.8e-17 Score=118.78 Aligned_cols=113 Identities=15% Similarity=0.098 Sum_probs=77.4
Q ss_pred eeCHHHHHHHhhc--CCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHH
Q 030411 50 YVNAEEAKNLIAV--ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFV 127 (178)
Q Consensus 50 ~Is~~e~~~~l~~--~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (178)
.|+++++.++++. ++.+|||+|++.+|..+|||||+|+|+..+...... ..... ...+.+.++..
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~---------~~~~~----~~~~~~~~~~~ 67 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQ---------GGKIL----LQQLLSCPEDR 67 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhc---------ccchh----hhhhcCCHHHH
Confidence 3799999999975 478999999999999999999999998753211000 00000 00011122222
Q ss_pred HHHHhcCCCCCeEEEEcCCChh---------HHHHHHHHHH--cCCceEEEeccccccccC
Q 030411 128 QSVKSQFSPESKLLVVCQEGLR---------SAAAANKLEE--AGFQNIACITSGLQTVKP 177 (178)
Q Consensus 128 ~~~~~~~~~~~~iviyC~~g~r---------s~~aa~~L~~--~G~~~v~~l~GG~~~w~~ 177 (178)
+.+.. . ++++||+||.++.+ +..++..|.. .++.+|++|+||+.+|++
T Consensus 68 ~~l~~-~-~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~ 126 (132)
T cd01446 68 DRLRR-G-ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSS 126 (132)
T ss_pred HHHhc-C-CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHh
Confidence 22222 2 67899999997764 6677777777 467889999999999975
No 51
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.72 E-value=1.8e-17 Score=146.36 Aligned_cols=106 Identities=12% Similarity=0.186 Sum_probs=84.9
Q ss_pred eeCHHHHHHHhhcCCeEEEeeCChhhhh--------hccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCC
Q 030411 50 YVNAEEAKNLIAVERYAVLDVRDNSQYN--------RAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTK 121 (178)
Q Consensus 50 ~Is~~e~~~~l~~~~~~lIDvR~~~e~~--------~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 121 (178)
.++.+++.+.+++++++|||+|+++||. .||||||+|+|+..+.... ...
T Consensus 148 ~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~----------------------~~l 205 (610)
T PRK09629 148 TATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKA----------------------RNL 205 (610)
T ss_pred cccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCCC----------------------CCC
Confidence 5789999999887788999999999995 5999999999986432210 011
Q ss_pred CChHHHHHHHhc--CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 122 QNPEFVQSVKSQ--FSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 122 ~~~~~~~~~~~~--~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
..++.++..+.. ++++++||+||++|.+|..+++.|+.+||+||++|+||+.+|..
T Consensus 206 k~~~el~~~~~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~ 263 (610)
T PRK09629 206 RIRQDMPEILRDLGITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGN 263 (610)
T ss_pred CCHHHHHHHHHHcCCCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhC
Confidence 223334444433 68899999999999999999999999999999999999999964
No 52
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.69 E-value=6.4e-17 Score=135.44 Aligned_cols=96 Identities=19% Similarity=0.322 Sum_probs=77.7
Q ss_pred eeeCHHHHHHHhhcCCeEEEeeCChhhhhhccCC---CeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChH
Q 030411 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIK---SSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPE 125 (178)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIp---gAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 125 (178)
..++++++.+++++++.+|||||++.||+.+||| ||+|+|+.++.+.. +
T Consensus 271 ~~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~~----------------------------~ 322 (370)
T PRK05600 271 ARTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAITDDA----------------------------D 322 (370)
T ss_pred cccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcch----------------------------h
Confidence 4689999999998777899999999999999998 59999998663210 0
Q ss_pred HHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCce-EEEecccccc
Q 030411 126 FVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQN-IACITSGLQT 174 (178)
Q Consensus 126 ~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~-v~~l~GG~~~ 174 (178)
+... ...++++ +||+||.+|.||..++..|++.||++ |++|+||+.+
T Consensus 323 ~~~~-l~~~~~~-~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~~ 370 (370)
T PRK05600 323 ILHA-LSPIDGD-NVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVNA 370 (370)
T ss_pred hhhh-ccccCCC-cEEEECCCChhHHHHHHHHHHcCCCCceEEeccccCC
Confidence 1111 1223444 89999999999999999999999996 9999999864
No 53
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.66 E-value=4.8e-16 Score=125.21 Aligned_cols=112 Identities=17% Similarity=0.176 Sum_probs=89.8
Q ss_pred ceeeCHHHHHHHhhcC-----CeEEEeeCCh--hhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCC
Q 030411 48 VNYVNAEEAKNLIAVE-----RYAVLDVRDN--SQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFT 120 (178)
Q Consensus 48 ~~~Is~~e~~~~l~~~-----~~~lIDvR~~--~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 120 (178)
...|+++++.+.+.++ ++.+++++.. .+|..+|||||+++++..+..... ..+.+
T Consensus 10 ~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~------------------~~~~~ 71 (285)
T COG2897 10 EFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPV------------------PLPHM 71 (285)
T ss_pred ceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCC------------------CCCCC
Confidence 4569999999998755 5666666665 889999999999999986543211 24677
Q ss_pred CCChHHHHHHHhc--CCCCCeEEEEcCC-ChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 121 KQNPEFVQSVKSQ--FSPESKLLVVCQE-GLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 121 ~~~~~~~~~~~~~--~~~~~~iviyC~~-g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
.+.++.+...+.. ++++.+||+|+.. +..|.+++|.|+.+|++||++|+||+++|++
T Consensus 72 lp~~e~fa~~~~~~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~ 131 (285)
T COG2897 72 LPSPEQFAKLLGELGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKA 131 (285)
T ss_pred CCCHHHHHHHHHHcCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHH
Confidence 7776666665655 7899999999975 5578899999999999999999999999975
No 54
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.66 E-value=9.1e-17 Score=128.13 Aligned_cols=130 Identities=14% Similarity=0.241 Sum_probs=103.1
Q ss_pred CccccccceeeeeecCCcccCCCcccccceeeccCceeeCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEeccccc
Q 030411 13 SRSKLRTTWLQFETHPGRKVSGKSICRRNLKIRADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIE 92 (178)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~ 92 (178)
+..+|.+..+++.- .+++-+.+- ...+....-++|+|+++.+++.+++.++||+|+..||+.||..||++.+...+
T Consensus 81 ~~~pF~r~kVk~kk---EIV~lg~~d-dv~p~~~vG~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tF 156 (308)
T COG1054 81 DEKPFWRLKVKLKK---EIVALGVED-DVDPLENVGTYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETF 156 (308)
T ss_pred cCCCcceEEEeehh---hheecCCCC-CcCccccccCccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhh
Confidence 34668888887777 666655443 12222333578999999999999999999999999999999999999998866
Q ss_pred ccCCcchhhhhhcccccccccccCCCCCCCChHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEecccc
Q 030411 93 NQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGL 172 (178)
Q Consensus 93 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 172 (178)
.+- |+++....+.+ ++++|+.||.+|.|...+..+|+..||++||.|+||+
T Consensus 157 ref----------------------------P~~v~~~~~~~-~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGI 207 (308)
T COG1054 157 REF----------------------------PAWVEENLDLL-KDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGI 207 (308)
T ss_pred hhh----------------------------HHHHHHHHHhc-cCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchH
Confidence 431 44555544444 4669999999999999999999999999999999999
Q ss_pred ccc
Q 030411 173 QTV 175 (178)
Q Consensus 173 ~~w 175 (178)
-.|
T Consensus 208 l~Y 210 (308)
T COG1054 208 LKY 210 (308)
T ss_pred HHH
Confidence 766
No 55
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.48 E-value=1.3e-13 Score=119.30 Aligned_cols=79 Identities=19% Similarity=0.335 Sum_probs=65.4
Q ss_pred HHHHHhhcCCeEEEeeCChhhhhhccCCC----eEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHHHH
Q 030411 55 EAKNLIAVERYAVLDVRDNSQYNRAHIKS----SYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSV 130 (178)
Q Consensus 55 e~~~~l~~~~~~lIDvR~~~e~~~ghIpg----Avnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (178)
+..+.+. ++.++||||+++||+.+|||| |+|+|+.++.. .
T Consensus 399 ~~~~~~~-~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l~~-----------------------------------~ 442 (482)
T PRK01269 399 ETVSELP-PDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKLST-----------------------------------Q 442 (482)
T ss_pred HHHHhcC-CCCEEEECCCHHHHhcCCCCCCCceEEECCHHHHHH-----------------------------------H
Confidence 3333333 468999999999999999999 99999875421 1
Q ss_pred HhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEec
Q 030411 131 KSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACIT 169 (178)
Q Consensus 131 ~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~ 169 (178)
...+++++++|+||.+|.||..++..|...||+||+++.
T Consensus 443 ~~~l~~~~~iivyC~~G~rS~~aa~~L~~~G~~nv~~y~ 481 (482)
T PRK01269 443 FGDLDQSKTYLLYCDRGVMSRLQALYLREQGFSNVKVYR 481 (482)
T ss_pred HhhcCCCCeEEEECCCCHHHHHHHHHHHHcCCccEEecC
Confidence 334678899999999999999999999999999999875
No 56
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=1.2e-13 Score=111.93 Aligned_cols=102 Identities=22% Similarity=0.350 Sum_probs=76.4
Q ss_pred eccCceeeCHHHHHHHhhcC------CeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCC
Q 030411 44 IRADVNYVNAEEAKNLIAVE------RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGL 117 (178)
Q Consensus 44 ~~~~~~~Is~~e~~~~l~~~------~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 117 (178)
....+++|+++.++.++++. .++|||+|-+.||.+|||+||+|++..+..+..
T Consensus 151 k~~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~~~~--------------------- 209 (325)
T KOG3772|consen 151 KSQDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELLQDF--------------------- 209 (325)
T ss_pred ccccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhhhhh---------------------
Confidence 34578899999999999751 467999999999999999999999976432210
Q ss_pred CCCCCChHHHHHHHhcC---CCCCeEEEEcC-CChhHHHHHHHHHH------------cCCceEEEecccccccc
Q 030411 118 PFTKQNPEFVQSVKSQF---SPESKLLVVCQ-EGLRSAAAANKLEE------------AGFQNIACITSGLQTVK 176 (178)
Q Consensus 118 ~~~~~~~~~~~~~~~~~---~~~~~iviyC~-~g~rs~~aa~~L~~------------~G~~~v~~l~GG~~~w~ 176 (178)
|.. .... .+...+||||. +..|...+|..|+. .-|..+|+|+|||..|-
T Consensus 210 --------f~~--~~~~~~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff 274 (325)
T KOG3772|consen 210 --------FLL--KDGVPSGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFF 274 (325)
T ss_pred --------hcc--ccccccccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHH
Confidence 000 0001 13356899998 67899999999985 24567999999999884
No 57
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.23 E-value=5.2e-11 Score=94.86 Aligned_cols=111 Identities=13% Similarity=0.166 Sum_probs=87.4
Q ss_pred eeeCHHHHHHHhhcCCeEEEeeC---------ChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCC
Q 030411 49 NYVNAEEAKNLIAVERYAVLDVR---------DNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPF 119 (178)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDvR---------~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 119 (178)
..|+++++.+.+.+.+..|||.- ...||..-|||||+++.++......+ ..++
T Consensus 5 ~iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~------------------~~~~ 66 (286)
T KOG1529|consen 5 SIVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSS------------------PYRH 66 (286)
T ss_pred cccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCC------------------cccc
Confidence 35889999999988889999975 24577888999999999886543322 2445
Q ss_pred CCCChHHHHHHHhc--CCCCCeEEEEcC--CChh-HHHHHHHHHHcCCceEEEeccccccccC
Q 030411 120 TKQNPEFVQSVKSQ--FSPESKLLVVCQ--EGLR-SAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 120 ~~~~~~~~~~~~~~--~~~~~~iviyC~--~g~r-s~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
+.+.++.++..... +++++.+|||+. .|+. |.+++|.++..|+++|+.|+||+..|+.
T Consensus 67 ~lp~~e~Fa~y~~~lGi~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~ 129 (286)
T KOG1529|consen 67 MLPTAEHFAEYASRLGVDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKA 129 (286)
T ss_pred cCccHHHHHHHHHhcCCCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHH
Confidence 66665555555544 688899999999 6664 6699999999999999999999999975
No 58
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.21 E-value=8.8e-12 Score=101.53 Aligned_cols=102 Identities=18% Similarity=0.323 Sum_probs=81.2
Q ss_pred cCceeeCHHHHHHHhhc-CCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCCh
Q 030411 46 ADVNYVNAEEAKNLIAV-ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNP 124 (178)
Q Consensus 46 ~~~~~Is~~e~~~~l~~-~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 124 (178)
..-.+|++.++++++++ ...++||||++-||+..|+|+|+|||+.+++....
T Consensus 314 ~~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~--------------------------- 366 (427)
T KOG2017|consen 314 EPDERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSG--------------------------- 366 (427)
T ss_pred ChhhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhhh---------------------------
Confidence 44578999999999987 47899999999999999999999999987754311
Q ss_pred HHHHHHHhcC-CCCCeEEEEcCCChhHHHHHHHHHHcCCc-eEEEeccccccccC
Q 030411 125 EFVQSVKSQF-SPESKLLVVCQEGLRSAAAANKLEEAGFQ-NIACITSGLQTVKP 177 (178)
Q Consensus 125 ~~~~~~~~~~-~~~~~iviyC~~g~rs~~aa~~L~~~G~~-~v~~l~GG~~~w~~ 177 (178)
+.....+ ...++|+++|..|+.|..+.+.|++..++ +|.-+.||+.+|..
T Consensus 367 ---~~~~~~~~~~~~~I~ViCrrGNdSQ~Av~~Lre~~~~~~vrDvigGl~~w~~ 418 (427)
T KOG2017|consen 367 ---KKLQGDLNTESKDIFVICRRGNDSQRAVRILREKFPDSSVRDVIGGLKAWAA 418 (427)
T ss_pred ---hhhcccccccCCCEEEEeCCCCchHHHHHHHHhhCCchhhhhhhhHHHHHHH
Confidence 1111222 24567999999999999999999987654 56678899999953
No 59
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.98 E-value=1.1e-09 Score=88.55 Aligned_cols=98 Identities=13% Similarity=0.298 Sum_probs=75.2
Q ss_pred ccCceeeCHHHHHHHhhcC------CeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCC
Q 030411 45 RADVNYVNAEEAKNLIAVE------RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLP 118 (178)
Q Consensus 45 ~~~~~~Is~~e~~~~l~~~------~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 118 (178)
...+++|+++.++..++.. +.+|||+|-+.||.+|||-+||||.-..
T Consensus 238 ~Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~~--------------------------- 290 (427)
T COG5105 238 SDSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISSTK--------------------------- 290 (427)
T ss_pred ccchhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchHH---------------------------
Confidence 3467899999999999742 4679999999999999999999997541
Q ss_pred CCCCChHHHHHHHhc-CCCCCeEEEEcC-CChhHHHHHHHHHHcC------------CceEEEeccccccc
Q 030411 119 FTKQNPEFVQSVKSQ-FSPESKLLVVCQ-EGLRSAAAANKLEEAG------------FQNIACITSGLQTV 175 (178)
Q Consensus 119 ~~~~~~~~~~~~~~~-~~~~~~iviyC~-~g~rs~~aa~~L~~~G------------~~~v~~l~GG~~~w 175 (178)
++...+... +..-.-+|++|. +..|+...|.+|+... |..||+|+|||..+
T Consensus 291 ------~l~~~F~hkplThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~f 355 (427)
T COG5105 291 ------KLGLLFRHKPLTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKF 355 (427)
T ss_pred ------HHHHHHHhccccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHH
Confidence 122222222 233456899998 6789999999998752 46899999999865
No 60
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.91 E-value=2.3e-09 Score=85.54 Aligned_cols=92 Identities=16% Similarity=0.310 Sum_probs=69.7
Q ss_pred CCeEEEeeCChhhhh-----------hccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHHHHH
Q 030411 63 ERYAVLDVRDNSQYN-----------RAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVK 131 (178)
Q Consensus 63 ~~~~lIDvR~~~e~~-----------~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (178)
.++.++|.|...+|. .||||||+|+|+.++.... .+..+..+.-....
T Consensus 171 ~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~---------------------g~~k~~edl~~~f~ 229 (286)
T KOG1529|consen 171 KNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPD---------------------GFIKPAEDLKHLFA 229 (286)
T ss_pred ccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccc---------------------cccCCHHHHHHHHH
Confidence 478999999988874 4899999999998654221 11111122222222
Q ss_pred h-cCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEecccccccc
Q 030411 132 S-QFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVK 176 (178)
Q Consensus 132 ~-~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~ 176 (178)
+ .+..++++|+-|..|..+...+-.|.+.| .++.+++|++..|.
T Consensus 230 ~~~l~~~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew~ 274 (286)
T KOG1529|consen 230 QKGLKLSKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWTEWA 274 (286)
T ss_pred hcCcccCCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHHHHh
Confidence 2 26678999999999999999999999999 77999999999995
No 61
>COG2603 Predicted ATPase [General function prediction only]
Probab=98.35 E-value=7.6e-08 Score=77.10 Aligned_cols=112 Identities=19% Similarity=0.331 Sum_probs=80.8
Q ss_pred CCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHHHHHhcCCCCCeEEE
Q 030411 63 ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQFSPESKLLV 142 (178)
Q Consensus 63 ~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi 142 (178)
.+..+||||.|-||..|+.|+++|+|....+....+++-+++.++....++..+.-......+.++.+.... .+.++-+
T Consensus 14 ~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f~-e~~~~Gi 92 (334)
T COG2603 14 ADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAFQ-EENPVGI 92 (334)
T ss_pred cCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHH-HhCCcce
Confidence 567899999999999999999999999988877788888888666665555544433333334444433322 2445666
Q ss_pred EcC-CChhHHHHHHHH-HHcCCceEEEecccccccc
Q 030411 143 VCQ-EGLRSAAAANKL-EEAGFQNIACITSGLQTVK 176 (178)
Q Consensus 143 yC~-~g~rs~~aa~~L-~~~G~~~v~~l~GG~~~w~ 176 (178)
+|. +|.||...+.+| ...|++ +--+.||+.+.+
T Consensus 93 ~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalr 127 (334)
T COG2603 93 LCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALR 127 (334)
T ss_pred eeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHH
Confidence 688 578999999999 677875 556678887653
No 62
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=97.24 E-value=0.0022 Score=44.93 Aligned_cols=79 Identities=18% Similarity=0.206 Sum_probs=40.1
Q ss_pred eeeCHHHHHHHhhcCCeEEEeeCChhhhhh-------------ccCCCeEEecccccccCCcchhhhhhccccccccccc
Q 030411 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYNR-------------AHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFF 115 (178)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~-------------ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~ 115 (178)
..++++++.++-+.+=-.||+.|+..|-.. -.+ .-+++|...-
T Consensus 13 ~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl-~y~~iPv~~~----------------------- 68 (110)
T PF04273_consen 13 GQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGL-QYVHIPVDGG----------------------- 68 (110)
T ss_dssp CS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT--EEEE----TT-----------------------
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeecCCC-----------------------
Confidence 468999999888866668999998754211 011 2466776421
Q ss_pred CCCCCCCChHHHHHHHhcCC-CCCeEEEEcCCChhHHHHHHH
Q 030411 116 GLPFTKQNPEFVQSVKSQFS-PESKLLVVCQEGLRSAAAANK 156 (178)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~-~~~~iviyC~~g~rs~~aa~~ 156 (178)
..+.+.++.+.+.++ ..+||++||.+|.|+...+..
T Consensus 69 -----~~~~~~v~~f~~~l~~~~~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 69 -----AITEEDVEAFADALESLPKPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp -----T--HHHHHHHHHHHHTTTTSEEEE-SCSHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHhCCCCEEEECCCChhHHHHHHH
Confidence 112333333333332 356999999999998765544
No 63
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=97.04 E-value=0.0045 Score=44.76 Aligned_cols=86 Identities=16% Similarity=0.246 Sum_probs=49.7
Q ss_pred eeeCHHHHHHHhhcCCeEEEeeCChhhhhhcc----------CCC--eEEecccccccCCcchhhhhhcccccccccccC
Q 030411 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYNRAH----------IKS--SYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFG 116 (178)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~gh----------Ipg--Avnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 116 (178)
..++++++..+.+.+=-.|||.|+..|..... -+| -+++|+..-
T Consensus 13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~------------------------ 68 (135)
T TIGR01244 13 PQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAG------------------------ 68 (135)
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCC------------------------
Confidence 56889998887665555799999876633211 122 345665410
Q ss_pred CCCCCCChHHHHHHHhcC-CCCCeEEEEcCCChhHHHHHHH-HHHcCC
Q 030411 117 LPFTKQNPEFVQSVKSQF-SPESKLLVVCQEGLRSAAAANK-LEEAGF 162 (178)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~-~~~~~iviyC~~g~rs~~aa~~-L~~~G~ 162 (178)
..+++.+..+...+ ..+.+|++||.+|.|+..++.. +...|.
T Consensus 69 ----~~~~~~v~~f~~~~~~~~~pvL~HC~sG~Rt~~l~al~~~~~g~ 112 (135)
T TIGR01244 69 ----DITPDDVETFRAAIGAAEGPVLAYCRSGTRSSLLWGFRQAAEGV 112 (135)
T ss_pred ----CCCHHHHHHHHHHHHhCCCCEEEEcCCChHHHHHHHHHHHHcCC
Confidence 01122222222222 2468899999999998876544 333454
No 64
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=96.85 E-value=0.0013 Score=52.67 Aligned_cols=109 Identities=15% Similarity=0.146 Sum_probs=63.4
Q ss_pred eeCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHHH
Q 030411 50 YVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQS 129 (178)
Q Consensus 50 ~Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (178)
.++++++.+.+..++.+++|+|+ +..||.+|+|+-+..+... . -..|...+.++..........++.
T Consensus 5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPalmlr----r--l~~g~l~~ra~~p~~~d~~~~~~~--- 71 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPALMLR----R--LTGGNLPVRALFPRSCDDKRFPAR--- 71 (343)
T ss_pred HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHHHHH----H--HhCCCCcceeccCCcccccccccc---
Confidence 46889999999888899999999 5789999998776543211 0 011112222222111111111111
Q ss_pred HHhcCCCCCeEEEEcCCC--hh-----HH---HHHHHHHHcCCceEEEeccccccccC
Q 030411 130 VKSQFSPESKLLVVCQEG--LR-----SA---AAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 130 ~~~~~~~~~~iviyC~~g--~r-----s~---~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
=+...+|.|+.+. .. +. ..-..++..|+. ++.|.||+..+++
T Consensus 72 -----c~~v~vilyD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~~-a~yL~ggF~~fq~ 123 (343)
T KOG1717|consen 72 -----CGTVTVILYDESSAEWEEETGAESVLGLLLKKLKDEGCS-ARYLSGGFSKFQA 123 (343)
T ss_pred -----CCcceeeecccccccccccchhhhHHHHHHHHHHhcCcc-hhhhhcccchhhh
Confidence 1235789998751 11 11 122456667986 8999999987764
No 65
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=96.11 E-value=0.018 Score=42.74 Aligned_cols=123 Identities=16% Similarity=0.285 Sum_probs=49.8
Q ss_pred ccceeeccCceeeCHHHHHHHhhcCCeEEEeeCChhhhhhc---cCCCe--EEecccccccCC--cchhhhh--hccccc
Q 030411 39 RRNLKIRADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRA---HIKSS--YHVPLFIENQDN--DLGTIIK--RTVHNN 109 (178)
Q Consensus 39 ~~~~~~~~~~~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~g---hIpgA--vnip~~~~~~~~--~~~~l~~--~~~~~~ 109 (178)
+..+-..+....+|+++...+.+-+=-.|||.|++.|.... .++|. +|+|+....... ....... ......
T Consensus 18 ~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (164)
T PF13350_consen 18 PGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRG 97 (164)
T ss_dssp TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHH
T ss_pred CCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhH
Confidence 33444456778899999887775444579999999998763 34454 355554322110 0000000 000000
Q ss_pred ccccccCCCCCCCChHHHHHHHhc-CCCCCeEEEEcCCCh-h-HHHHHHHHHHcCCc
Q 030411 110 FSGLFFGLPFTKQNPEFVQSVKSQ-FSPESKLLVVCQEGL-R-SAAAANKLEEAGFQ 163 (178)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iviyC~~g~-r-s~~aa~~L~~~G~~ 163 (178)
+...+. .......+.+...+.. .+...+++++|..|. | ...++-.|.-+|+.
T Consensus 98 ~~~~Y~--~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~~lGV~ 152 (164)
T PF13350_consen 98 MLEFYR--EMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLSLLGVP 152 (164)
T ss_dssp HHHHHH--HGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHHHTT--
T ss_pred HHHHHH--HHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHHHcCCC
Confidence 000110 1111112333333333 234469999999775 3 55666677778875
No 66
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=95.12 E-value=0.0079 Score=52.87 Aligned_cols=101 Identities=23% Similarity=0.352 Sum_probs=65.1
Q ss_pred cCceeeCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChH
Q 030411 46 ADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPE 125 (178)
Q Consensus 46 ~~~~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 125 (178)
...++|+++++..+ ....++|.|...||..+|+++++|+|+..-+.. ...+ .
T Consensus 619 e~~prmsAedl~~~---~~l~v~d~r~~~ef~r~~~s~s~nip~~~~ea~--l~~~-----------------------~ 670 (725)
T KOG1093|consen 619 EHCPRISAEDLIWL---KMLYVLDTRQESEFQREHFSDSINIPFNNHEAD--LDWL-----------------------R 670 (725)
T ss_pred hcCccccHHHHHHH---HHHHHHhHHHHHHHHHhhccccccCCccchHHH--HHHh-----------------------h
Confidence 35677888887666 356799999999999999999999999722110 0000 0
Q ss_pred HHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEecccccccc
Q 030411 126 FVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVK 176 (178)
Q Consensus 126 ~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~ 176 (178)
+.+...+ ..+++++++.....-+......+..+-+..+.++.+|++..+
T Consensus 671 ~l~~~~~--~~~~~~v~~~~~~K~~~e~~~~~~~mk~p~~cil~~~~~~~~ 719 (725)
T KOG1093|consen 671 FLPGIVC--SEGKKCVVVGKNDKHAAERLTELYVMKVPRICILHDGFNNID 719 (725)
T ss_pred cchHhHH--hhCCeEEEeccchHHHHHHhhHHHHhcccHHHHHHHHHhhcC
Confidence 1111111 245666776665555666666666665777778888877554
No 67
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=94.48 E-value=0.0055 Score=50.59 Aligned_cols=41 Identities=7% Similarity=-0.006 Sum_probs=33.6
Q ss_pred eCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEeccccc
Q 030411 51 VNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIE 92 (178)
Q Consensus 51 Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~ 92 (178)
-+++++.+.+.. ...++|+|....|+.+||||++|+|...+
T Consensus 16 ~~~~~~~~~l~~-~~~~~d~rg~i~~a~egIngtis~~~~~~ 56 (314)
T PRK00142 16 EDPEAFRDEHLA-LCKSLGLKGRILVAEEGINGTVSGTIEQT 56 (314)
T ss_pred CCHHHHHHHHHH-HHHHcCCeeEEEEcCCCceEEEEecHHHH
Confidence 456777777763 46789999999999999999999998543
No 68
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=92.10 E-value=1.1 Score=31.85 Aligned_cols=29 Identities=34% Similarity=0.453 Sum_probs=20.2
Q ss_pred CCCCCeEEEEcCCCh-hHHH--HHHHHHHcCC
Q 030411 134 FSPESKLLVVCQEGL-RSAA--AANKLEEAGF 162 (178)
Q Consensus 134 ~~~~~~iviyC~~g~-rs~~--aa~~L~~~G~ 162 (178)
...+.+|+|+|..|. ||.. ++..+...|+
T Consensus 75 ~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~ 106 (138)
T smart00195 75 EKKGGKVLVHCQAGVSRSATLIIAYLMKYRNL 106 (138)
T ss_pred hcCCCeEEEECCCCCchHHHHHHHHHHHHhCC
Confidence 456789999999875 7663 4445556665
No 69
>PLN02727 NAD kinase
Probab=91.95 E-value=0.76 Score=43.12 Aligned_cols=85 Identities=18% Similarity=0.171 Sum_probs=52.7
Q ss_pred CceeeCHHHHHHHhhcCCeEEEeeCChhhhhhccC------------CCeEEecccccccCCcchhhhhhcccccccccc
Q 030411 47 DVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHI------------KSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLF 114 (178)
Q Consensus 47 ~~~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghI------------pgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~ 114 (178)
.-.+++++++..+.+.+=-.||+.|++.|- .+.. =.-+++|+..-
T Consensus 265 rsgQpspe~la~LA~~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs~~---------------------- 321 (986)
T PLN02727 265 RGGQVTEEGLKWLLEKGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVEVR---------------------- 321 (986)
T ss_pred EeCCCCHHHHHHHHHCCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecCCC----------------------
Confidence 345799999988777655579999997662 1111 02456665321
Q ss_pred cCCCCCCCChHHHHHHHhcC-C-CCCeEEEEcCCChh--HHHHHHHHHH
Q 030411 115 FGLPFTKQNPEFVQSVKSQF-S-PESKLLVVCQEGLR--SAAAANKLEE 159 (178)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~-~-~~~~iviyC~~g~r--s~~aa~~L~~ 159 (178)
..+.++.++.+.+.+ + ..+||++||.+|.+ ...++.+|..
T Consensus 322 -----~apt~EqVe~fa~~l~~slpkPVLvHCKSGarRAGamvA~yl~~ 365 (986)
T PLN02727 322 -----TAPSAEQVEKFASLVSDSSKKPIYLHSKEGVWRTSAMVSRWKQY 365 (986)
T ss_pred -----CCCCHHHHHHHHHHHHhhcCCCEEEECCCCCchHHHHHHHHHHH
Confidence 122345566655555 3 46899999999884 3355555553
No 70
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=91.74 E-value=1.1 Score=31.54 Aligned_cols=29 Identities=34% Similarity=0.502 Sum_probs=18.5
Q ss_pred CCCCCeEEEEcCCCh-hHHHH--HHHHHHcCC
Q 030411 134 FSPESKLLVVCQEGL-RSAAA--ANKLEEAGF 162 (178)
Q Consensus 134 ~~~~~~iviyC~~g~-rs~~a--a~~L~~~G~ 162 (178)
...+.+|+|+|..|. ||..+ +..+...|+
T Consensus 78 ~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~ 109 (139)
T cd00127 78 REKGGKVLVHCLAGVSRSATLVIAYLMKTLGL 109 (139)
T ss_pred HhcCCcEEEECCCCCchhHHHHHHHHHHHcCC
Confidence 345679999999875 76633 344444444
No 71
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=91.23 E-value=0.61 Score=40.34 Aligned_cols=41 Identities=22% Similarity=0.469 Sum_probs=30.2
Q ss_pred eCHHHHHHHhh--cC--CeEEEeeCChhhhhhccCCCeEEecccc
Q 030411 51 VNAEEAKNLIA--VE--RYAVLDVRDNSQYNRAHIKSSYHVPLFI 91 (178)
Q Consensus 51 Is~~e~~~~l~--~~--~~~lIDvR~~~e~~~ghIpgAvnip~~~ 91 (178)
|++-|+.+.-+ .+ +..|+|+|+.++|..||+-.|.|+.-..
T Consensus 309 isv~el~~~~~~~~~~VrFFiVDcRpaeqynaGHlstaFhlDc~l 353 (669)
T KOG3636|consen 309 ISVIELTSHDEISSGSVRFFIVDCRPAEQYNAGHLSTAFHLDCVL 353 (669)
T ss_pred hhHHHhhcccccccCceEEEEEeccchhhcccccchhhhcccHHH
Confidence 55555543322 12 5679999999999999999999987653
No 72
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.26 E-value=2.1 Score=30.48 Aligned_cols=80 Identities=15% Similarity=0.193 Sum_probs=49.5
Q ss_pred eeeCHHHHHHHhhcCCeEEEeeCChhhhhh-------------ccCCCeEEecccccccCCcchhhhhhccccccccccc
Q 030411 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYNR-------------AHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFF 115 (178)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~-------------ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~ 115 (178)
+.++++++.++-..+=..||--|+..|-.. ..+. ..++|..
T Consensus 14 gQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~-y~~iPV~------------------------- 67 (130)
T COG3453 14 GQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLT-YTHIPVT------------------------- 67 (130)
T ss_pred CCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCc-eEEeecC-------------------------
Confidence 579999998888766567999998544211 1111 2344443
Q ss_pred CCCCCCCChHHHHHHHhcC-CCCCeEEEEcCCChhHHHHHHHH
Q 030411 116 GLPFTKQNPEFVQSVKSQF-SPESKLLVVCQEGLRSAAAANKL 157 (178)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~-~~~~~iviyC~~g~rs~~aa~~L 157 (178)
.....++-++.+.+.+ ..+.+|+-||.+|.||...+..-
T Consensus 68 ---~~~iT~~dV~~f~~Al~eaegPVlayCrsGtRs~~ly~~~ 107 (130)
T COG3453 68 ---GGGITEADVEAFQRALDEAEGPVLAYCRSGTRSLNLYGLG 107 (130)
T ss_pred ---CCCCCHHHHHHHHHHHHHhCCCEEeeecCCchHHHHHHHH
Confidence 1112234444444444 35789999999999998776543
No 73
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=87.93 E-value=1.3 Score=36.51 Aligned_cols=36 Identities=14% Similarity=0.083 Sum_probs=31.7
Q ss_pred CceeeCHHHHHHHhhcCCeEEEeeCChhhhhh---ccCC
Q 030411 47 DVNYVNAEEAKNLIAVERYAVLDVRDNSQYNR---AHIK 82 (178)
Q Consensus 47 ~~~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~---ghIp 82 (178)
....++..++.+.+.+.++.+||+|+..+|.+ ||||
T Consensus 134 g~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~ 172 (311)
T TIGR03167 134 GMTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALG 172 (311)
T ss_pred CCCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCC
Confidence 35678999999999877889999999999998 8988
No 74
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=85.65 E-value=6.8 Score=27.35 Aligned_cols=29 Identities=45% Similarity=0.696 Sum_probs=18.9
Q ss_pred CCCCCeEEEEcCCCh-hHHH--HHHHHHHcCC
Q 030411 134 FSPESKLLVVCQEGL-RSAA--AANKLEEAGF 162 (178)
Q Consensus 134 ~~~~~~iviyC~~g~-rs~~--aa~~L~~~G~ 162 (178)
...+.+|+|+|..|. ||.. ++..+...|.
T Consensus 70 ~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 101 (133)
T PF00782_consen 70 ISEGGKVLVHCKAGLSRSGAVAAAYLMKKNGM 101 (133)
T ss_dssp HHTTSEEEEEESSSSSHHHHHHHHHHHHHHTS
T ss_pred hcccceeEEEeCCCcccchHHHHHHHHHHcCC
Confidence 456789999999765 6553 3334454565
No 75
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=84.37 E-value=1.3 Score=32.84 Aligned_cols=39 Identities=21% Similarity=0.355 Sum_probs=23.9
Q ss_pred CCCCeEEEEc-C----CChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 135 SPESKLLVVC-Q----EGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 135 ~~~~~iviyC-~----~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
+++.++++++ . .|..-..+++.|+++|+.+..+||||-.
T Consensus 98 ~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgS 141 (170)
T PF09992_consen 98 TADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGS 141 (170)
T ss_dssp -TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG
T ss_pred eCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcc
Confidence 4555665555 4 3677788999999999999999999865
No 76
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=81.52 E-value=4.2 Score=31.97 Aligned_cols=61 Identities=23% Similarity=0.356 Sum_probs=40.1
Q ss_pred ccccccccCCCCCCCC---hHHHHHHHhcCC---CCCeEEEEcCCChhHHH-----HHHHHHHcCCceEEEe
Q 030411 108 NNFSGLFFGLPFTKQN---PEFVQSVKSQFS---PESKLLVVCQEGLRSAA-----AANKLEEAGFQNIACI 168 (178)
Q Consensus 108 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---~~~~iviyC~~g~rs~~-----aa~~L~~~G~~~v~~l 168 (178)
..|..+..|.|.+... ..+++...++++ ++..+|++|.+...... .-..|...||++|++.
T Consensus 102 ~dF~~lkig~PlLy~k~DYe~~v~aik~~~ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~ 173 (265)
T COG4822 102 NDFKRLKIGRPLLYYKNDYEICVEAIKDQIPPLNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVA 173 (265)
T ss_pred hhhheeecCCceeechhhHHHHHHHHHHhcCCcCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEE
Confidence 4566666777655443 556777777766 78889999985433222 2235788899998854
No 77
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=79.03 E-value=3.7 Score=30.91 Aligned_cols=37 Identities=32% Similarity=0.504 Sum_probs=22.7
Q ss_pred HHHHHHhcCCCCCeEEEEcCCCh-hHH-H-HHHHHHHcCC
Q 030411 126 FVQSVKSQFSPESKLLVVCQEGL-RSA-A-AANKLEEAGF 162 (178)
Q Consensus 126 ~~~~~~~~~~~~~~iviyC~~g~-rs~-~-aa~~L~~~G~ 162 (178)
.++.+...+.++.+|+++|..|. ||. . +|+.+...|.
T Consensus 94 ~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~ 133 (180)
T COG2453 94 IVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGL 133 (180)
T ss_pred HHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCC
Confidence 33444444567779999999764 555 3 4455666454
No 78
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=77.68 E-value=7 Score=33.85 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc-----CCceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA-----GFQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~-----G~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+.+...+++|++|..+..+|-.|.+. |-..|...+|+|++|.
T Consensus 121 ~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t 177 (442)
T TIGR03372 121 LLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKS 177 (442)
T ss_pred HHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCC
Confidence 444444444554446788899999988888777654 5556888899999874
No 79
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=76.15 E-value=9.9 Score=28.29 Aligned_cols=36 Identities=22% Similarity=0.553 Sum_probs=26.5
Q ss_pred HhcC--CCCCeEEEEcCCCh---hHHHHHHHHHHcCCceEEE
Q 030411 131 KSQF--SPESKLLVVCQEGL---RSAAAANKLEEAGFQNIAC 167 (178)
Q Consensus 131 ~~~~--~~~~~iviyC~~g~---rs~~aa~~L~~~G~~~v~~ 167 (178)
...+ ++..+|+++|..|. .+..+|++|...|++ |.+
T Consensus 17 ~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v 57 (169)
T PF03853_consen 17 RKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTV 57 (169)
T ss_dssp HHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEE
T ss_pred HHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEE
Confidence 3445 67889999999754 577899999999996 665
No 80
>PRK06148 hypothetical protein; Provisional
Probab=74.93 E-value=8.8 Score=36.88 Aligned_cols=54 Identities=9% Similarity=0.203 Sum_probs=40.3
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc--CCceEEEeccccccccC
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVKP 177 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~~ 177 (178)
.++.+.+.+.++.+-..+++|++|..+..+|-.|.+. |-++|..++|||++|..
T Consensus 666 ~~lAe~L~~~~p~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~ 721 (1013)
T PRK06148 666 VAYAERLTATLPDGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTT 721 (1013)
T ss_pred HHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCc
Confidence 3455555554554446789999999999888888775 66778899999999854
No 81
>PRK06917 hypothetical protein; Provisional
Probab=74.29 E-value=9.4 Score=33.04 Aligned_cols=54 Identities=9% Similarity=0.105 Sum_probs=37.7
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHH-----cCC---ceEEEeccccccccC
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEE-----AGF---QNIACITSGLQTVKP 177 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~-----~G~---~~v~~l~GG~~~w~~ 177 (178)
.++.+.+.+..+.....+++|++|..+..+|-.|.+ .|+ +.|..++|||++|..
T Consensus 77 ~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~ 138 (447)
T PRK06917 77 EKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITM 138 (447)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccH
Confidence 345555555555444578899999998888877764 243 458888999999853
No 82
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=73.61 E-value=8.8 Score=32.87 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=37.4
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc--CCceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..++...-+++|++|..+..+|-.|.+. |-++|..++|+|++|-
T Consensus 90 ~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 143 (433)
T PRK08117 90 KLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRT 143 (433)
T ss_pred HHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcC
Confidence 444444444544455788899999988888777553 6667889999999875
No 83
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=71.70 E-value=5 Score=30.15 Aligned_cols=37 Identities=32% Similarity=0.477 Sum_probs=22.4
Q ss_pred HHHHHHhcCCCCCeEEEEcCCCh-h-HHHHHHHHHHcCC
Q 030411 126 FVQSVKSQFSPESKLLVVCQEGL-R-SAAAANKLEEAGF 162 (178)
Q Consensus 126 ~~~~~~~~~~~~~~iviyC~~g~-r-s~~aa~~L~~~G~ 162 (178)
+.+.....+..+.+|+++|.+|. | ...||-.|.++|-
T Consensus 122 i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~ 160 (168)
T PF05706_consen 122 ILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGD 160 (168)
T ss_dssp HHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcC
Confidence 44444555678899999999753 4 4567778887763
No 84
>PRK12361 hypothetical protein; Provisional
Probab=71.49 E-value=27 Score=30.97 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=16.8
Q ss_pred CCCCCeEEEEcCCCh-hHH-HHHHHHHH
Q 030411 134 FSPESKLLVVCQEGL-RSA-AAANKLEE 159 (178)
Q Consensus 134 ~~~~~~iviyC~~g~-rs~-~aa~~L~~ 159 (178)
...+.+|+|+|..|. ||. .++.+|..
T Consensus 172 ~~~~~~VlVHC~~G~sRSa~vv~ayLm~ 199 (547)
T PRK12361 172 VRANKSVVVHCALGRGRSVLVLAAYLLC 199 (547)
T ss_pred HHCCCeEEEECCCCCCcHHHHHHHHHHH
Confidence 345788999999764 555 34444543
No 85
>PRK07481 hypothetical protein; Provisional
Probab=70.71 E-value=12 Score=32.39 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=36.5
Q ss_pred HHHHHHHhcCC-CCCeEEEEcCCChhHHHHHHHHHHc--------CCceEEEeccccccccC
Q 030411 125 EFVQSVKSQFS-PESKLLVVCQEGLRSAAAANKLEEA--------GFQNIACITSGLQTVKP 177 (178)
Q Consensus 125 ~~~~~~~~~~~-~~~~iviyC~~g~rs~~aa~~L~~~--------G~~~v~~l~GG~~~w~~ 177 (178)
++.+.+.+.++ .+-.-+++|++|..+..+|-.|.+. |-++|..++|||++|..
T Consensus 90 ~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ 151 (449)
T PRK07481 90 ELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHF 151 (449)
T ss_pred HHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcch
Confidence 44455444442 3344688899999988888777653 34568899999999854
No 86
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=70.08 E-value=9.1 Score=28.98 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=28.6
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
++++|+|+++ +|.+...++..|.+.|...|+++
T Consensus 151 ~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~ 186 (190)
T TIGR00201 151 QGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVW 186 (190)
T ss_pred CCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEE
Confidence 3578999988 79999999999999999888765
No 87
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=68.72 E-value=3.7 Score=34.30 Aligned_cols=37 Identities=14% Similarity=0.029 Sum_probs=30.0
Q ss_pred CceeeCHHHHHHHhh------cCCeEEEeeCChhhhhhccCCCe
Q 030411 47 DVNYVNAEEAKNLIA------VERYAVLDVRDNSQYNRAHIKSS 84 (178)
Q Consensus 47 ~~~~Is~~e~~~~l~------~~~~~lIDvR~~~e~~~ghIpgA 84 (178)
....++++++.++++ ..+..+||||++. |+..++|+-
T Consensus 275 ~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~g 317 (339)
T PRK07688 275 HKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDG 317 (339)
T ss_pred CcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCC
Confidence 456799999998884 2477899999988 998888853
No 88
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=68.38 E-value=21 Score=24.11 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=30.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 135 SPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 135 ~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
+.+.++++||++-.....++..|.+.+.. +..+.|++.
T Consensus 26 ~~~~~~lvf~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~ 63 (131)
T cd00079 26 KKGGKVLIFCPSKKMLDELAELLRKPGIK-VAALHGDGS 63 (131)
T ss_pred cCCCcEEEEeCcHHHHHHHHHHHHhcCCc-EEEEECCCC
Confidence 35778999999888888888899887764 778877753
No 89
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=67.69 E-value=15 Score=31.73 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=37.7
Q ss_pred hHHHHHHHhcCCCCC-eEEEEcCCChhHHHHHHHHHHc--CCceEEEeccccccccC
Q 030411 124 PEFVQSVKSQFSPES-KLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVKP 177 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~-~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~~ 177 (178)
.++.+.+.+..+..- .-|++|++|..+..+|-.|.+. |-+.|..++|||++|-.
T Consensus 100 ~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ 156 (451)
T PRK06918 100 IELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTL 156 (451)
T ss_pred HHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccch
Confidence 345555444444321 3688999999988888877664 55668888999999853
No 90
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=67.42 E-value=15 Score=31.90 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc-----C---CceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA-----G---FQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~-----G---~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+.+-.-+++|++|..+..+|-.|.+. | -++|..++|+|++|-
T Consensus 103 ~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t 162 (460)
T PRK06916 103 LLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDT 162 (460)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCccc
Confidence 445554444544435789999999988888777664 4 346888899999874
No 91
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=67.15 E-value=17 Score=31.67 Aligned_cols=53 Identities=9% Similarity=0.003 Sum_probs=37.2
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc--CCceEEEecccccccc
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVK 176 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~ 176 (178)
.++.+.+.+..+.+-.-+++|++|..+..+|-.|.+. |-+.|....|||++|.
T Consensus 99 ~~lae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t 153 (457)
T PRK05639 99 IRVAEKLAEISPIENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQT 153 (457)
T ss_pred HHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCcc
Confidence 3455555554544334678899999988888877663 5556878899999875
No 92
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=67.01 E-value=21 Score=27.71 Aligned_cols=39 Identities=23% Similarity=0.537 Sum_probs=28.5
Q ss_pred HHHhcCCC--CCeEEEEcCC---ChhHHHHHHHHHHcCCceEEEe
Q 030411 129 SVKSQFSP--ESKLLVVCQE---GLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 129 ~~~~~~~~--~~~iviyC~~---g~rs~~aa~~L~~~G~~~v~~l 168 (178)
......+. ..+|+++|.+ |.....+|++|...|++ |.++
T Consensus 39 ~i~~~~~~~~~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v~ 82 (203)
T COG0062 39 AILREYPLGRARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTVL 82 (203)
T ss_pred HHHHHcCcccCCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEEE
Confidence 34444555 5689999985 45688999999999975 5533
No 93
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=66.61 E-value=18 Score=31.23 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=37.5
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc--CCceEEEecccccccc
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVK 176 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~ 176 (178)
.++.+.+.+.++.+..-+++|++|..+..+|-.|.+. |-+.|....|||++|.
T Consensus 96 ~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t 150 (433)
T PRK00615 96 ILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHA 150 (433)
T ss_pred HHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCC
Confidence 3455555554544334678889999988888877664 6566878899999985
No 94
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=66.42 E-value=17 Score=30.94 Aligned_cols=52 Identities=12% Similarity=0.111 Sum_probs=35.1
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc--------CCceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA--------GFQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~--------G~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+.+-.-+++|++|..+..+|-.|.+. |-++|-.++|||.+|.
T Consensus 89 ~la~~l~~~~p~~~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t 148 (423)
T PRK05964 89 RLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDT 148 (423)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCcc
Confidence 344444444443334678899999888877776542 4456888999999875
No 95
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=66.42 E-value=18 Score=31.71 Aligned_cols=51 Identities=12% Similarity=0.158 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc--CCceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+.++. -.-+.+|++|..+..+|-.|.+. |-++|..+.|+|++|-
T Consensus 143 ~lAe~l~~~~p~-~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~ 195 (474)
T PLN02482 143 VLAEMVIDAVPS-VEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHA 195 (474)
T ss_pred HHHHHHHHhCCC-CCEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCc
Confidence 344444444443 34688899999999888887765 6667888899999985
No 96
>PRK06062 hypothetical protein; Provisional
Probab=66.30 E-value=16 Score=31.64 Aligned_cols=52 Identities=8% Similarity=0.080 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc--CCceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+.+-.-|++|++|..+..+|-.|.+. |-++|....|||++|.
T Consensus 99 ~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t 152 (451)
T PRK06062 99 EAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGT 152 (451)
T ss_pred HHHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCC
Confidence 444444444444344688899999988888877664 6566888899999985
No 97
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=66.21 E-value=17 Score=31.62 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc-----CCceEEEeccccccccC
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA-----GFQNIACITSGLQTVKP 177 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~-----G~~~v~~l~GG~~~w~~ 177 (178)
++.+.+.+..+.+-..+++|++|..+..+|-.|.+. |-.+|...+|||++|..
T Consensus 128 ~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~ 185 (459)
T PRK11522 128 MLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSL 185 (459)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcH
Confidence 344444444454445688899999988888777664 33357788999999853
No 98
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=65.60 E-value=21 Score=27.43 Aligned_cols=37 Identities=16% Similarity=0.343 Sum_probs=27.6
Q ss_pred HhcCCCCCeEEEEcCC---ChhHHHHHHHHHHcCCceEEEe
Q 030411 131 KSQFSPESKLLVVCQE---GLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 131 ~~~~~~~~~iviyC~~---g~rs~~aa~~L~~~G~~~v~~l 168 (178)
.+.+++.++|+++|.. |.....+|++|...|++ |+.+
T Consensus 39 ~~~~~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v~-V~~~ 78 (205)
T TIGR00197 39 LQAFPLAGHVIIFCGPGNNGGDGFVVARHLKGFGVE-VFLL 78 (205)
T ss_pred HHHcCCCCeEEEEECCCCCccHHHHHHHHHHhCCCE-EEEE
Confidence 3345556789999984 55788999999888875 7765
No 99
>PRK07482 hypothetical protein; Provisional
Probab=65.56 E-value=20 Score=31.14 Aligned_cols=53 Identities=11% Similarity=0.015 Sum_probs=36.3
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc-----CC---ceEEEecccccccc
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA-----GF---QNIACITSGLQTVK 176 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~-----G~---~~v~~l~GG~~~w~ 176 (178)
.++.+.+.+..+.+-.-+++|++|..+..+|-.+.+. |. ++|..+.|||++|.
T Consensus 97 ~~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t 157 (461)
T PRK07482 97 ITLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSG 157 (461)
T ss_pred HHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCcc
Confidence 3455555555554445678899999988877777652 43 45778889999874
No 100
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=65.28 E-value=15 Score=25.11 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=27.5
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIAC 167 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~ 167 (178)
++++|+++++ +|.....+...|++.|.+.|..
T Consensus 87 ~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~ 121 (125)
T PF00156_consen 87 KGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVGV 121 (125)
T ss_dssp TTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEEE
T ss_pred cceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEEE
Confidence 6788999876 7999999999999999987654
No 101
>PRK06541 hypothetical protein; Provisional
Probab=64.64 E-value=19 Score=31.25 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=35.7
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc-----C---CceEEEeccccccccC
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA-----G---FQNIACITSGLQTVKP 177 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~-----G---~~~v~~l~GG~~~w~~ 177 (178)
++.+.+.+..+.+-.-+++|++|..+..+|-.|.+. | -++|..++|||.+|..
T Consensus 99 ~la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ 159 (460)
T PRK06541 99 ELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQ 159 (460)
T ss_pred HHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcch
Confidence 444444444444334678899999988877776553 2 3567788999998853
No 102
>PRK05965 hypothetical protein; Provisional
Probab=64.60 E-value=22 Score=30.93 Aligned_cols=52 Identities=8% Similarity=0.124 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc-----C---CceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA-----G---FQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~-----G---~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+.+-.-+++|++|..+..+|-.|.+. | -++|..+++||++|.
T Consensus 94 ~lae~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t 153 (459)
T PRK05965 94 RLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSS 153 (459)
T ss_pred HHHHHHHhhCCCCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCccc
Confidence 455555555554545688899999888877776542 4 345778899999884
No 103
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=64.13 E-value=18 Score=29.81 Aligned_cols=49 Identities=12% Similarity=0.145 Sum_probs=37.0
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCc-eEEEeccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQ-NIACITSGLQ 173 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~-~v~~l~GG~~ 173 (178)
+.+........++.+++|+|++-..+..++..|.+.+.. ++..+-|++.
T Consensus 210 ~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~ 259 (358)
T TIGR01587 210 SSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFT 259 (358)
T ss_pred HHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCC
Confidence 344444444556789999999988888899999988874 6888888763
No 104
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=63.89 E-value=20 Score=31.00 Aligned_cols=52 Identities=15% Similarity=0.120 Sum_probs=35.1
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc--------CCceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA--------GFQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~--------G~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+.+-.-|++|++|..+..+|-.|.+. |-++|..+.|||++|.
T Consensus 93 ~la~~l~~~~p~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t 152 (442)
T PRK13360 93 ELANRIAEIAPGGLNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVG 152 (442)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCcc
Confidence 344444444444444678899999888877776553 3346888899999884
No 105
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=63.77 E-value=23 Score=30.54 Aligned_cols=52 Identities=12% Similarity=0.121 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc-------CCceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA-------GFQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~-------G~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+.+-.-+++|++|..+..+|-.|.+. |-++|..++|||+++.
T Consensus 90 ~la~~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t 148 (428)
T PRK07986 90 ELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDT 148 (428)
T ss_pred HHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCc
Confidence 344444444444345789999999988877776553 4456888899998864
No 106
>PRK08297 L-lysine aminotransferase; Provisional
Probab=62.88 E-value=23 Score=30.56 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=36.1
Q ss_pred HHHHHHHhcC-CCCCeEEEEcCCChhHHHHHHHHHH---------cCC-----ceEEEeccccccccC
Q 030411 125 EFVQSVKSQF-SPESKLLVVCQEGLRSAAAANKLEE---------AGF-----QNIACITSGLQTVKP 177 (178)
Q Consensus 125 ~~~~~~~~~~-~~~~~iviyC~~g~rs~~aa~~L~~---------~G~-----~~v~~l~GG~~~w~~ 177 (178)
++.+.+.+.. +++-.-|++|++|..+..+|-.|.+ .|. ++|..+.|||++|..
T Consensus 96 ~la~~l~~~~~p~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~ 163 (443)
T PRK08297 96 RFVDTFARVLGDPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSG 163 (443)
T ss_pred HHHHHHHhhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcch
Confidence 3444444333 3444578899999998887777763 354 458888999998853
No 107
>PRK07483 hypothetical protein; Provisional
Probab=62.73 E-value=24 Score=30.47 Aligned_cols=52 Identities=10% Similarity=0.062 Sum_probs=34.4
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc--------CCceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA--------GFQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~--------G~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+.+-.-+++|++|..+..+|-.|.+. |-++|...+++|++|.
T Consensus 77 ~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t 136 (443)
T PRK07483 77 ALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNT 136 (443)
T ss_pred HHHHHHHHhCCCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcC
Confidence 344444444444434678899999888777766552 3345778899999885
No 108
>PRK07678 aminotransferase; Validated
Probab=62.60 E-value=22 Score=30.84 Aligned_cols=52 Identities=8% Similarity=0.076 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc--------CCceEEEeccccccccC
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA--------GFQNIACITSGLQTVKP 177 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~--------G~~~v~~l~GG~~~w~~ 177 (178)
++.+.+.+..+.. .-+++|++|..+..+|-.|.+. |-+.|..+.|||++|..
T Consensus 93 ~lae~l~~~~~~~-~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~ 152 (451)
T PRK07678 93 KLAEKLNEWLGGE-YVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSM 152 (451)
T ss_pred HHHHHHHHhCCCC-CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccH
Confidence 4444444444433 3678999999988877776553 33457788999999853
No 109
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=61.92 E-value=23 Score=30.56 Aligned_cols=52 Identities=10% Similarity=0.017 Sum_probs=36.8
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc--CCceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+.+-.-+++|++|..+..+|-.|.+. |-+.|..+.|||.+|.
T Consensus 88 ~la~~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t 141 (443)
T PRK08360 88 LLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGST 141 (443)
T ss_pred HHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcC
Confidence 445554444544334588899999988888877664 6567888889998875
No 110
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=61.77 E-value=23 Score=26.16 Aligned_cols=47 Identities=23% Similarity=0.398 Sum_probs=32.2
Q ss_pred HHHhcCCCCCeEEEEcCCCh--hHHHHHHHHHH---cCCceEEEeccccccc
Q 030411 129 SVKSQFSPESKLLVVCQEGL--RSAAAANKLEE---AGFQNIACITSGLQTV 175 (178)
Q Consensus 129 ~~~~~~~~~~~iviyC~~g~--rs~~aa~~L~~---~G~~~v~~l~GG~~~w 175 (178)
..+..++++..+|+.+..|. .|...|..|.+ .|..++..+-||-.+.
T Consensus 59 ~il~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~ 110 (155)
T PF02590_consen 59 RILKKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGL 110 (155)
T ss_dssp HHHCTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB-
T ss_pred HHHhhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 34555678888899988775 57788888776 5888899999987664
No 111
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=61.51 E-value=16 Score=27.48 Aligned_cols=33 Identities=27% Similarity=0.273 Sum_probs=27.8
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
++++|+|+++ +|.+...++..|++.|.++|+.+
T Consensus 96 ~gk~VLIVDDIidTG~Tl~~~~~~Lk~~Ga~~V~~a 131 (181)
T PRK09162 96 KGRTVLVVDDILDEGHTLAAIRDRCLEMGAAEVYSA 131 (181)
T ss_pred CCCEEEEEccccCcHHHHHHHHHHHHhCCCCEEEEE
Confidence 5678999877 78888999999999998887754
No 112
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=61.40 E-value=14 Score=24.91 Aligned_cols=27 Identities=33% Similarity=0.721 Sum_probs=19.6
Q ss_pred CCeEEEEcCCChhHHHHHHHH----HHcCCc
Q 030411 137 ESKLLVVCQEGLRSAAAANKL----EEAGFQ 163 (178)
Q Consensus 137 ~~~iviyC~~g~rs~~aa~~L----~~~G~~ 163 (178)
.++|++.|.+|..|..++..+ ++.|++
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~ 33 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVP 33 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCc
Confidence 468999999998777666544 445774
No 113
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=61.22 E-value=25 Score=30.30 Aligned_cols=52 Identities=21% Similarity=0.341 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCCC---CeEEEEcCCChhHHHHHHHHHHc--CCceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPE---SKLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~---~~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+.. .+++++|++|..+..+|-.|.+. |-++|....|+|++|.
T Consensus 86 ~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t 142 (442)
T TIGR00709 86 AFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMT 142 (442)
T ss_pred HHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCch
Confidence 3444444444432 46788889999988888777664 6567888899999884
No 114
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=60.58 E-value=17 Score=29.93 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=28.2
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
+++++||+++ +|.+-..+++.|++.|-++|+.+
T Consensus 210 ~Gr~vIIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~ 245 (301)
T PRK07199 210 AGRTPVLVDDIVSTGRTLIEAARQLRAAGAASPDCV 245 (301)
T ss_pred CCCEEEEEecccCcHHHHHHHHHHHHHCCCcEEEEE
Confidence 5788999976 78899999999999999887754
No 115
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=60.55 E-value=24 Score=30.48 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCCC-CeEEEEcCCChhHHHHHHHHHHc--CCceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPE-SKLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~-~~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+.. ..-|++|++|..+..+|-.|.+. |-++|..++|+|++|-
T Consensus 89 ~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t 143 (445)
T PRK08593 89 RLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGST 143 (445)
T ss_pred HHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCc
Confidence 3444444444433 24688899999988888877654 6567888999999984
No 116
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=60.50 E-value=16 Score=33.41 Aligned_cols=48 Identities=13% Similarity=0.324 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
.+++.....+..+.+++|+|++-.++...+..|...|++ +..+.|++.
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~-~~~~h~~~~ 481 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIK-VRYLHSDID 481 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhccee-EEEEECCCC
Confidence 444444444567888999999988999999999999985 666666544
No 117
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=60.35 E-value=19 Score=24.30 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=25.8
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCChhH-HHHHHHHHHcCCc
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEGLRS-AAAANKLEEAGFQ 163 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g~rs-~~aa~~L~~~G~~ 163 (178)
.++++.+.. .++++++..|++.++ ...+..|+.+|+.
T Consensus 20 ~e~l~~L~~---~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 20 VEALDALRE---RGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp HHHHHHHHH---TTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred HHHHHHHHH---cCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 345544443 578999999987766 5788889999985
No 118
>PRK07036 hypothetical protein; Provisional
Probab=59.91 E-value=30 Score=30.10 Aligned_cols=52 Identities=10% Similarity=0.105 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc-----C---CceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA-----G---FQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~-----G---~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+.+-.-|++|++|..+..+|-.|.+. | -+.|..+.|+|.+|.
T Consensus 99 ~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t 158 (466)
T PRK07036 99 ELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGST 158 (466)
T ss_pred HHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCcc
Confidence 444554444544445688999999888877776542 3 346778899999875
No 119
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=59.83 E-value=24 Score=30.77 Aligned_cols=52 Identities=13% Similarity=0.138 Sum_probs=35.1
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc-----C---CceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA-----G---FQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~-----G---~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+.+-.-|++|++|..+..+|-.|.+. | -++|..+.|+|++|.
T Consensus 94 ~lae~L~~~~p~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t 153 (466)
T PRK07030 94 ELSERLVKITPPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGET 153 (466)
T ss_pred HHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCccc
Confidence 444444444443444688899999988877776532 4 345788899999874
No 120
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=59.50 E-value=26 Score=29.92 Aligned_cols=53 Identities=13% Similarity=0.200 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCC-CCeEEEEcCCChhHHHHHHHHHHc--CCceEEEeccccccccC
Q 030411 125 EFVQSVKSQFSP-ESKLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVKP 177 (178)
Q Consensus 125 ~~~~~~~~~~~~-~~~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~~ 177 (178)
++.+.+.+..+. +..-+++|++|..+..+|-.|.+. |-+.|....|+|++|..
T Consensus 80 ~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ 135 (420)
T TIGR00700 80 ALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTN 135 (420)
T ss_pred HHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcH
Confidence 444444444432 224578889999988888877664 65668888999998853
No 121
>PRK06149 hypothetical protein; Provisional
Probab=59.33 E-value=24 Score=33.75 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=37.3
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc--CCceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+.++.+...+++|++|..+..+|-.|.+. |-++|..++++|.+|.
T Consensus 628 elae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t 681 (972)
T PRK06149 628 EFSERLAALAPDGLDTVFLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWT 681 (972)
T ss_pred HHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHhcCCCeEEEEeCCCCCcC
Confidence 444444444544445788899999988888776553 6667888999999875
No 122
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=59.32 E-value=16 Score=31.78 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=30.0
Q ss_pred CCCeEEEEcCC---ChhHHHHHHHHHHcCCceEEEec
Q 030411 136 PESKLLVVCQE---GLRSAAAANKLEEAGFQNIACIT 169 (178)
Q Consensus 136 ~~~~iviyC~~---g~rs~~aa~~L~~~G~~~v~~l~ 169 (178)
++++||++++| |.+|....+.|++.|-++|++-.
T Consensus 347 ~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvri 383 (470)
T COG0034 347 KGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRI 383 (470)
T ss_pred CCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEe
Confidence 57999999995 89999999999999999887643
No 123
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=58.91 E-value=12 Score=25.59 Aligned_cols=30 Identities=33% Similarity=0.536 Sum_probs=20.7
Q ss_pred eEEEEcCCChhHHHHHHHH----HHcCCceEEEec
Q 030411 139 KLLVVCQEGLRSAAAANKL----EEAGFQNIACIT 169 (178)
Q Consensus 139 ~iviyC~~g~rs~~aa~~L----~~~G~~~v~~l~ 169 (178)
+|++.|.+|..|..++..+ ++.|++ +.+..
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~-~~i~a 35 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVP-LEAAA 35 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCc-EEEEE
Confidence 5899999998877777655 445774 44433
No 124
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=58.59 E-value=30 Score=30.06 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=36.8
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc--CCceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+....-+++|++|..+..+|-.|.+. |-++|..+.|+|++|.
T Consensus 117 ~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t 170 (459)
T PRK06082 117 ECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGAS 170 (459)
T ss_pred HHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCcc
Confidence 444444444443335688899999999888887663 6567888899998874
No 125
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=58.46 E-value=24 Score=26.56 Aligned_cols=39 Identities=28% Similarity=0.354 Sum_probs=31.3
Q ss_pred HHHHHHHhcCCCCCeEEEEcC---CChhHHHHHHHHHHcCCc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQ---EGLRSAAAANKLEEAGFQ 163 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~---~g~rs~~aa~~L~~~G~~ 163 (178)
+.++.....++++++++++++ +|.....|...+.+.|-+
T Consensus 110 d~~Emq~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~ 151 (183)
T KOG1712|consen 110 DRFEMQKGAIKPGQRVVVVDDLLATGGTLAAATELLERVGAE 151 (183)
T ss_pred cceeeeccccCCCCeEEEEechhhcCccHHHHHHHHHHhccE
Confidence 445555677889999999987 788888888999999864
No 126
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=58.36 E-value=32 Score=29.70 Aligned_cols=52 Identities=17% Similarity=0.154 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCC-CCeEEEEcCCChhHHHHHHHHHHc--CCceEEEecccccccc
Q 030411 125 EFVQSVKSQFSP-ESKLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~-~~~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+. .-.-|++|++|..+..+|-.|.+. |-++|..++|||++|.
T Consensus 101 ~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t 155 (441)
T PRK05769 101 ELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRT 155 (441)
T ss_pred HHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCcc
Confidence 444444444442 234689999999988877776654 6566888899999885
No 127
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=58.20 E-value=28 Score=29.75 Aligned_cols=52 Identities=10% Similarity=0.146 Sum_probs=34.8
Q ss_pred HHHHHHHhcCC-CCCeEEEEcCCChhHHHHHHHHHHc--CCceEEEecccccccc
Q 030411 125 EFVQSVKSQFS-PESKLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~-~~~~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+ .+..-+++|++|..+..+|-.|.+. |-+.|...+|||++|.
T Consensus 87 ~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 141 (421)
T PRK06777 87 TLAERINALAPIDGPAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRT 141 (421)
T ss_pred HHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCcc
Confidence 34444444343 2223566778999988888877664 5566888899999885
No 128
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=58.17 E-value=20 Score=27.37 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=28.0
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
+++..||+++ +|.+-..++..|++.|-++||.+
T Consensus 82 ~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~ 117 (184)
T PF14572_consen 82 KGKICIIVDDIIDTGGTLIKAAELLKERGAKKVYAC 117 (184)
T ss_dssp TTSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEE
T ss_pred cCCeEeeecccccchHHHHHHHHHHHHcCCCEEEEE
Confidence 5677888865 78888999999999999999865
No 129
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=57.63 E-value=24 Score=28.39 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=36.8
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEE
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~ 166 (178)
-+.++.....+.++..+++||..-.........|++.||.++.
T Consensus 175 W~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie 217 (256)
T COG2519 175 WNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIE 217 (256)
T ss_pred HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchh
Confidence 4677777777889999999999988999999999999996644
No 130
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=57.16 E-value=27 Score=27.82 Aligned_cols=40 Identities=25% Similarity=0.327 Sum_probs=25.6
Q ss_pred hHHHHHHHhc----CCCCCeEEEEcCCCh-h-HHHHHHHHHHcCCc
Q 030411 124 PEFVQSVKSQ----FSPESKLLVVCQEGL-R-SAAAANKLEEAGFQ 163 (178)
Q Consensus 124 ~~~~~~~~~~----~~~~~~iviyC~~g~-r-s~~aa~~L~~~G~~ 163 (178)
.+.++.+.+. +..+.+|+|+|..|. | ...++.+|.+.|++
T Consensus 153 ~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~~Gms 198 (241)
T PTZ00393 153 VDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIEFGMD 198 (241)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 4444444443 346789999999653 4 44667777777863
No 131
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=56.92 E-value=29 Score=30.18 Aligned_cols=53 Identities=21% Similarity=0.264 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCCC---CeEEEEcCCChhHHHHHHHHHHc--CCceEEEeccccccccC
Q 030411 125 EFVQSVKSQFSPE---SKLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVKP 177 (178)
Q Consensus 125 ~~~~~~~~~~~~~---~~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~~ 177 (178)
++.+.+.+..+.. ..+++++++|..+..+|-.|.+. |-++|....|||++|..
T Consensus 105 ~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~ 162 (459)
T PRK06931 105 AFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTH 162 (459)
T ss_pred HHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccH
Confidence 3444444444422 24667778999988888877663 66678889999999853
No 132
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=56.83 E-value=34 Score=29.37 Aligned_cols=52 Identities=13% Similarity=0.262 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCC-CeEEEEcCCChhHHHHHHHHHHc--CCceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPE-SKLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~-~~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+.+ ..-+++|++|..+..+|-.|.+. |-++|....|+|++|.
T Consensus 87 ~la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 141 (425)
T PRK07495 87 RLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRT 141 (425)
T ss_pred HHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCcc
Confidence 3444444444432 24588999999988888777664 6567888899999884
No 133
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=56.58 E-value=35 Score=29.63 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=43.3
Q ss_pred ccCCCCCCCCh---HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc--CCceEEEeccccccccC
Q 030411 114 FFGLPFTKQNP---EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVKP 177 (178)
Q Consensus 114 ~~~~~~~~~~~---~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~~ 177 (178)
..|..+..|.+ ++.+...+.+ +.-..|-+|++|..+...|-+|.+. |-++|...+|.|.++.+
T Consensus 83 ~~G~~fg~Pte~Ei~~Aell~~~~-p~~e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D 150 (432)
T COG0001 83 ERGLSFGAPTELEVELAELLIERV-PSIEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSD 150 (432)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHhc-CcccEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCcc
Confidence 34555555552 2333333334 3446788999999999888888775 77788899999998754
No 134
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=56.51 E-value=22 Score=28.38 Aligned_cols=30 Identities=27% Similarity=0.546 Sum_probs=24.3
Q ss_pred CeEEEEcCC---ChhHHHHHHHHHHcCCceEEEe
Q 030411 138 SKLLVVCQE---GLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 138 ~~iviyC~~---g~rs~~aa~~L~~~G~~~v~~l 168 (178)
.+|+|+|.. |.....+|++|...|++ |.++
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 93 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGYE-VTVC 93 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCCe-EEEE
Confidence 679999974 56788999999999996 6644
No 135
>PRK07046 aminotransferase; Validated
Probab=56.48 E-value=29 Score=30.15 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc--CCceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+.++ -.-+.+|++|..+...|-.|.+. |-++|...+|+|.+|-
T Consensus 119 ~lAe~l~~~~~--~~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~ 170 (453)
T PRK07046 119 WVGEELARRFG--LPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTV 170 (453)
T ss_pred HHHHHHHHHhC--CCEEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCc
Confidence 34444444443 23578899999988888877664 6677888899999984
No 136
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=56.37 E-value=17 Score=30.91 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=22.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCc
Q 030411 137 ESKLLVVCQEGLRSAAAANKLEEAGFQ 163 (178)
Q Consensus 137 ~~~iviyC~~g~rs~~aa~~L~~~G~~ 163 (178)
+.++++.-.+|..|..+++.|.+.|++
T Consensus 180 ~gkvlvllSGGiDSpVAa~ll~krG~~ 206 (381)
T PRK08384 180 QGKVVALLSGGIDSPVAAFLMMKRGVE 206 (381)
T ss_pred CCcEEEEEeCChHHHHHHHHHHHcCCe
Confidence 456777778899999999999999986
No 137
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=56.29 E-value=22 Score=32.52 Aligned_cols=49 Identities=12% Similarity=0.318 Sum_probs=37.1
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
..+++.....+.++.+++|+|++-.++...+..|.+.|++ +..+.|++.
T Consensus 429 ~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~-~~~lh~~~~ 477 (655)
T TIGR00631 429 DDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIK-VRYLHSEID 477 (655)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccc-eeeeeCCCC
Confidence 3455555555567888999999988899999999999985 666656543
No 138
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=56.09 E-value=36 Score=29.56 Aligned_cols=52 Identities=13% Similarity=0.233 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHH-----cC---CceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEE-----AG---FQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~-----~G---~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+..-.-+++|++|..+..+|-.+.+ .| -++|..+.+||.+|.
T Consensus 101 ~lAe~L~~~~p~~~~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t 160 (453)
T PRK06943 101 ELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGET 160 (453)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCc
Confidence 44444444444333467889999998888777753 24 356888899999885
No 139
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=55.83 E-value=17 Score=24.97 Aligned_cols=26 Identities=35% Similarity=0.624 Sum_probs=19.0
Q ss_pred CeEEEEcCCChhHHHHHHHH----HHcCCc
Q 030411 138 SKLLVVCQEGLRSAAAANKL----EEAGFQ 163 (178)
Q Consensus 138 ~~iviyC~~g~rs~~aa~~L----~~~G~~ 163 (178)
++|++.|.+|..+..++..+ ++.|++
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~ 31 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKD 31 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCc
Confidence 36999999998877666654 445774
No 140
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=55.73 E-value=20 Score=30.70 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=28.6
Q ss_pred CCCeEEEEcCC---ChhHHHHHHHHHHcCCceEEE
Q 030411 136 PESKLLVVCQE---GLRSAAAANKLEEAGFQNIAC 167 (178)
Q Consensus 136 ~~~~iviyC~~---g~rs~~aa~~L~~~G~~~v~~ 167 (178)
.+++||+++++ |.++....++|++.|-++|++
T Consensus 355 ~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~ 389 (474)
T KOG0572|consen 355 EGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHI 389 (474)
T ss_pred CCceEEEEecceeccCchHHHHHHHHHcCCcEEEE
Confidence 47899999995 889999999999999998874
No 141
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=55.72 E-value=19 Score=30.41 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEE
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~ 166 (178)
.+.++++...+|..|..+++.+.+.|++ |.
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~krG~~-V~ 200 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMKRGCR-VV 200 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHHcCCe-EE
Confidence 4567888888899999999999889985 54
No 142
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=55.66 E-value=22 Score=31.20 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=29.5
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEec
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACIT 169 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l~ 169 (178)
++++|+++++ +|.++..+++.|++.|.+.|.+.-
T Consensus 347 ~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i 383 (471)
T PRK06781 347 EGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRI 383 (471)
T ss_pred CCceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEE
Confidence 4688999998 599999999999999999888654
No 143
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=55.41 E-value=30 Score=29.67 Aligned_cols=52 Identities=13% Similarity=0.189 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc--CCceEEEeccccccccC
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVKP 177 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~~ 177 (178)
++.+.+.+..+ +..-+++|++|..+..+|-.|.+. |-+.|..+.|||.+|..
T Consensus 97 ~la~~l~~~~p-~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ 150 (428)
T PRK12389 97 EFAKMLKEAIP-SLEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSD 150 (428)
T ss_pred HHHHHHHHhCC-CCcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChH
Confidence 34444444444 334578899999988888877664 55678888999999853
No 144
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=55.27 E-value=36 Score=24.33 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=30.8
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCCh----hHHHHHHHHHHcCCceEEEecccc
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEGL----RSAAAANKLEEAGFQNIACITSGL 172 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g~----rs~~aa~~L~~~G~~~v~~l~GG~ 172 (178)
+++++...+ .+..+|.+|..-. ........|++.|..++.++-||.
T Consensus 43 e~~v~aa~e---~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~ 92 (132)
T TIGR00640 43 EEIARQAVE---ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGV 92 (132)
T ss_pred HHHHHHHHH---cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 455555443 4667899998421 244667778888887788888874
No 145
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=55.09 E-value=35 Score=29.20 Aligned_cols=52 Identities=12% Similarity=0.210 Sum_probs=34.9
Q ss_pred HHHHHHHhcCC-CCCeEEEEcCCChhHHHHHHHHHHc--CCceEEEecccccccc
Q 030411 125 EFVQSVKSQFS-PESKLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~-~~~~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+ .+..-+++|++|..+..+|-.|.+. |-++|..+.|||++|.
T Consensus 87 ~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 141 (421)
T PRK09792 87 TLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRT 141 (421)
T ss_pred HHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCcc
Confidence 44444444333 2223566777999988888877664 5566888899999985
No 146
>PRK06105 aminotransferase; Provisional
Probab=55.05 E-value=43 Score=29.12 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc-----C---CceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA-----G---FQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~-----G---~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+.+-.-+++|++|..+..+|-.|.+. | -++|..+++||++|.
T Consensus 96 ~lae~L~~~~p~~~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t 155 (460)
T PRK06105 96 DLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVT 155 (460)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcc
Confidence 444444444544335678899999888777776431 3 345778889999885
No 147
>PRK10565 putative carbohydrate kinase; Provisional
Probab=54.91 E-value=33 Score=30.35 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=26.7
Q ss_pred hcCCCCCeEEEEcCC---ChhHHHHHHHHHHcCCceEEEe
Q 030411 132 SQFSPESKLLVVCQE---GLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 132 ~~~~~~~~iviyC~~---g~rs~~aa~~L~~~G~~~v~~l 168 (178)
..+++..+|+|+|.. |.....+|++|...||+ |.++
T Consensus 55 ~~~~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~~-V~v~ 93 (508)
T PRK10565 55 SAYPDARHWLVLCGHGNNGGDGYVVARLAQAAGID-VTLL 93 (508)
T ss_pred HhcCCCCeEEEEEcCCCchHHHHHHHHHHHHCCCc-eEEE
Confidence 334556679999984 45678899999999996 5543
No 148
>PRK11595 DNA utilization protein GntX; Provisional
Probab=54.86 E-value=25 Score=27.43 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=28.4
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
.+++|+|+++ +|.+...++..|++.|.+.|+.+
T Consensus 186 ~~~~vllvDDv~tTG~Tl~~~~~~L~~~g~~~V~~~ 221 (227)
T PRK11595 186 QGQHMAIVDDVVTTGSTVAEIAQLLLRNGAASVQVW 221 (227)
T ss_pred CCCEEEEEeeeecchHHHHHHHHHHHHcCCcEEEEE
Confidence 4678999987 78999999999999999888765
No 149
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=54.84 E-value=32 Score=30.08 Aligned_cols=29 Identities=24% Similarity=0.463 Sum_probs=23.5
Q ss_pred CeEEEEcCC---ChhHHHHHHHHHHcCCceEEE
Q 030411 138 SKLLVVCQE---GLRSAAAANKLEEAGFQNIAC 167 (178)
Q Consensus 138 ~~iviyC~~---g~rs~~aa~~L~~~G~~~v~~ 167 (178)
++|+|+|.. |.....+|++|...|++ |.+
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~-V~v 91 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHHFGYK-PSI 91 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCc-eEE
Confidence 689999985 45678999999999996 553
No 150
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=54.84 E-value=25 Score=29.14 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=28.2
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
+++++||+++ +|.+-..+++.|++.|-++|+.+
T Consensus 216 ~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~ 251 (319)
T PRK04923 216 QGKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVAY 251 (319)
T ss_pred CCCEEEEEecccCchHHHHHHHHHHHHCCCCEEEEE
Confidence 5678999876 78899999999999999888754
No 151
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=54.51 E-value=45 Score=28.73 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc--------CCceEEEeccccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA--------GFQNIACITSGLQTV 175 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~--------G~~~v~~l~GG~~~w 175 (178)
++.+.+.+..+.+-.-|++|++|..+..+|..|.+. |-+.|..+.|||+++
T Consensus 91 ~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~ 149 (429)
T PRK06173 91 ELAQKLLEILPPSLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGD 149 (429)
T ss_pred HHHHHHHhhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCc
Confidence 444444454554445688999999988887776553 344577889999874
No 152
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=54.50 E-value=24 Score=31.22 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=29.4
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEec
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACIT 169 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l~ 169 (178)
++++|+|+++ +|.+...+++.|++.|-++|+++.
T Consensus 357 ~gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v 393 (501)
T PRK09246 357 KGKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFAS 393 (501)
T ss_pred cCCeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEE
Confidence 4688999998 699999999999999999888653
No 153
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=53.87 E-value=19 Score=23.24 Aligned_cols=25 Identities=40% Similarity=0.760 Sum_probs=17.5
Q ss_pred eEEEEcCCChhHHHHH-H----HHHHcCCc
Q 030411 139 KLLVVCQEGLRSAAAA-N----KLEEAGFQ 163 (178)
Q Consensus 139 ~iviyC~~g~rs~~aa-~----~L~~~G~~ 163 (178)
+|++.|.+|..+...+ . .+.+.|++
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~ 30 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE 30 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc
Confidence 5899999997655444 4 45666875
No 154
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=53.51 E-value=40 Score=29.18 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=33.8
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc-----C---CceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA-----G---FQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~-----G---~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+.+-.-|++|++|..+..+|-.|.+. | -++|..+.|||++|.
T Consensus 96 ~la~~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t 155 (445)
T PRK09221 96 ELAERLAELAPGGLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVG 155 (445)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccc
Confidence 444444444443334577889999888777766552 2 346778899998874
No 155
>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]
Probab=53.26 E-value=52 Score=28.32 Aligned_cols=51 Identities=14% Similarity=0.233 Sum_probs=39.4
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc--CCceEEEecccccc
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQT 174 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~ 174 (178)
.++.+.+.+.++.+-+++++.++|..+..+|-.|.+. |--++..+..||.+
T Consensus 95 ~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar~Yt~~~diIa~r~~YHG 147 (442)
T KOG1404|consen 95 HDLAEALVSKLPGDLKVVFFVNSGSEANELALKMARLYTGNLDIIARRNSYHG 147 (442)
T ss_pred HHHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHHHhcCCceEEEeeccccC
Confidence 6788888888999999999999999999999888775 33335555566543
No 156
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=53.26 E-value=37 Score=29.11 Aligned_cols=52 Identities=12% Similarity=0.053 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc--------CCceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA--------GFQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~--------G~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+.+-.-+++|++|..+..+|-.|.+. |-++|..+.|+|+++.
T Consensus 87 ~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t 146 (422)
T PRK05630 87 KLTRKLLNLTDNGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDT 146 (422)
T ss_pred HHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcc
Confidence 444444444444344688999999988877776553 2345778889998864
No 157
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=52.81 E-value=37 Score=29.05 Aligned_cols=39 Identities=28% Similarity=0.354 Sum_probs=29.8
Q ss_pred eEEEEcCCChhHHHHHHHHHHc--CCceEEEeccccccccC
Q 030411 139 KLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVKP 177 (178)
Q Consensus 139 ~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~~ 177 (178)
+++++|++|..+..+|-.|.+. |-++|..+.|||++|..
T Consensus 104 ~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ 144 (425)
T PRK09264 104 KVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTL 144 (425)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccH
Confidence 5667778999988888777654 55568888999999853
No 158
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=52.80 E-value=19 Score=24.19 Aligned_cols=25 Identities=32% Similarity=0.751 Sum_probs=18.0
Q ss_pred eEEEEcCCChhHHHHHHHH----HHcCCc
Q 030411 139 KLLVVCQEGLRSAAAANKL----EEAGFQ 163 (178)
Q Consensus 139 ~iviyC~~g~rs~~aa~~L----~~~G~~ 163 (178)
+|++.|.+|..+..++..+ ++.|++
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~ 29 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGID 29 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCc
Confidence 4899999998877666654 445764
No 159
>PRK07480 putative aminotransferase; Validated
Probab=52.80 E-value=45 Score=28.98 Aligned_cols=53 Identities=11% Similarity=0.147 Sum_probs=34.8
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc-----C---CceEEEecccccccc
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA-----G---FQNIACITSGLQTVK 176 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~-----G---~~~v~~l~GG~~~w~ 176 (178)
.++.+.+.+.++.+-.-+++|++|..+..+|-.|.+. | -++|..+.|+|.+|.
T Consensus 97 ~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t 157 (456)
T PRK07480 97 IELAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGST 157 (456)
T ss_pred HHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcc
Confidence 3455555555554444577888999888777766543 3 335778889998874
No 160
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=51.90 E-value=26 Score=27.46 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=27.3
Q ss_pred CeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 138 SKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 138 ~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
++|+++++ +|.+...++..|++.|.++|.++
T Consensus 185 ~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v~~~ 218 (225)
T COG1040 185 KNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVL 218 (225)
T ss_pred CeEEEEecccccHHHHHHHHHHHHHcCCceEEEE
Confidence 56999987 79999999999999999988765
No 161
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=51.82 E-value=27 Score=28.93 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=28.3
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
++++++|+++ +|.+-..+++.|++.|-+.|+.+
T Consensus 216 ~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~ 251 (320)
T PRK02269 216 KGKKCILIDDMIDTAGTICHAADALAEAGATEVYAS 251 (320)
T ss_pred CCCEEEEEeeecCcHHHHHHHHHHHHHCCCCEEEEE
Confidence 5788999976 78899999999999999888743
No 162
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=51.65 E-value=21 Score=30.76 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
.+.++||+|+++..+...+-.|...||. ...|.|-+.
T Consensus 299 ~g~s~iVF~~t~~tt~~la~~L~~lg~~-a~~LhGqms 335 (476)
T KOG0330|consen 299 AGNSVIVFCNTCNTTRFLALLLRNLGFQ-AIPLHGQMS 335 (476)
T ss_pred cCCcEEEEEeccchHHHHHHHHHhcCcc-eecccchhh
Confidence 3478999999999999999999999996 556666553
No 163
>PTZ00110 helicase; Provisional
Probab=51.19 E-value=38 Score=30.14 Aligned_cols=37 Identities=16% Similarity=0.307 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
...++||||++-..+..++..|...|+. +..+.|++.
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~g~~-~~~ihg~~~ 412 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLDGWP-ALCIHGDKK 412 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHcCCc-EEEEECCCc
Confidence 6678999999988888999999999996 667777654
No 164
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=50.75 E-value=59 Score=24.07 Aligned_cols=47 Identities=17% Similarity=0.322 Sum_probs=33.6
Q ss_pred HHHhcCCCCCeEEEEcCCCh--hHHHHHHHHHHc---CCceEEEeccccccc
Q 030411 129 SVKSQFSPESKLLVVCQEGL--RSAAAANKLEEA---GFQNIACITSGLQTV 175 (178)
Q Consensus 129 ~~~~~~~~~~~iviyC~~g~--rs~~aa~~L~~~---G~~~v~~l~GG~~~w 175 (178)
..+..++++.-+|+.|..|. .|...|..|.+. |..++..+-||-.++
T Consensus 59 ~il~~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~ 110 (157)
T PRK00103 59 RILAALPKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGL 110 (157)
T ss_pred HHHhhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCcccc
Confidence 34555677777888888765 577888887654 656788888986655
No 165
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=50.57 E-value=26 Score=29.12 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=28.3
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
+++++||+++ +|.+-..+++.|++.|-++|+.+
T Consensus 217 ~gk~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~ 252 (323)
T PRK02458 217 AGKKAILIDDILNTGKTFAEAAKIVEREGATEIYAV 252 (323)
T ss_pred CCCEEEEEcceeCcHHHHHHHHHHHHhCCCCcEEEE
Confidence 5788999976 78888999999999999988854
No 166
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.47 E-value=38 Score=29.41 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
+++..||||++-..+..++..|...|+. +..+-||+.
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~-~~~~H~~l~ 261 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIA-AGAYHAGLE 261 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCC-eeEeeCCCC
Confidence 5667799999988899999999999986 777777764
No 167
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=50.37 E-value=45 Score=29.05 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=28.7
Q ss_pred eEEEEcCCChhHHHHHHHHHHc--CCceEEEeccccccccC
Q 030411 139 KLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVKP 177 (178)
Q Consensus 139 ~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~~ 177 (178)
+++++.++|..+..+|-.|.+. |-++|..+.|||++|..
T Consensus 128 ~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~ 168 (464)
T PRK06938 128 KIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQ 168 (464)
T ss_pred eEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccH
Confidence 4444447999988888877663 65678888999999853
No 168
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=49.64 E-value=51 Score=22.89 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=27.7
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCCh----hHHHHHHHHHHcCCceEEEecccc
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEGL----RSAAAANKLEEAGFQNIACITSGL 172 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g~----rs~~aa~~L~~~G~~~v~~l~GG~ 172 (178)
+++.+...+ .+..+|++|..-. ........|++.|+.++.++-||-
T Consensus 40 e~~~~~a~~---~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~ 89 (122)
T cd02071 40 EEIVEAAIQ---EDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGI 89 (122)
T ss_pred HHHHHHHHH---cCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 344444332 3555788876422 234556667888887788877763
No 169
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=49.62 E-value=43 Score=30.01 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=23.9
Q ss_pred CeEEEEcCC---ChhHHHHHHHHHHcCCceEEEe
Q 030411 138 SKLLVVCQE---GLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 138 ~~iviyC~~---g~rs~~aa~~L~~~G~~~v~~l 168 (178)
++|+|+|.. |.....+|++|...||+ |.++
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~-V~V~ 168 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYK-PFVC 168 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCc-eEEE
Confidence 689999985 45677899999999996 5544
No 170
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=49.44 E-value=48 Score=23.45 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=26.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEec
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACIT 169 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~ 169 (178)
++++++++.. |..+..++..|...|+++|+++.
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~n 43 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAALGAKEITIVN 43 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEE
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEE
Confidence 4667777765 67888899999999999888764
No 171
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=49.32 E-value=37 Score=28.20 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=27.9
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
.++++|++++ +|.+-..++..|++.|-++|+..
T Consensus 213 ~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a~ 248 (314)
T COG0462 213 EGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYAA 248 (314)
T ss_pred CCCEEEEEeccccccHHHHHHHHHHHHCCCCeEEEE
Confidence 3567888887 78888999999999999998854
No 172
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=48.97 E-value=59 Score=28.00 Aligned_cols=52 Identities=12% Similarity=0.170 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCCC-CeEEEEcCCChhHHHHHHHHHHc--CCceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPE-SKLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~-~~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+.. ..-+++|++|..+..+|-.|.+. |-++|...+|+|++|.
T Consensus 103 ~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 157 (443)
T PRK06058 103 AVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRT 157 (443)
T ss_pred HHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcCh
Confidence 4444444444322 24677889998888877776653 5566888899999885
No 173
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=48.84 E-value=53 Score=21.90 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=23.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCce
Q 030411 137 ESKLLVVCQEGLRSAAAANKLEEAGFQN 164 (178)
Q Consensus 137 ~~~iviyC~~g~rs~~aa~~L~~~G~~~ 164 (178)
+-+|++-|..|..+..+...|.++|.+.
T Consensus 21 ~~kivvD~~~G~~~~~~~~ll~~lg~~~ 48 (104)
T PF02879_consen 21 GLKIVVDCMNGAGSDILPRLLERLGCDV 48 (104)
T ss_dssp TCEEEEE-TTSTTHHHHHHHHHHTTCEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCcE
Confidence 4589999999999999999999999953
No 174
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=48.78 E-value=62 Score=22.41 Aligned_cols=41 Identities=17% Similarity=0.266 Sum_probs=24.0
Q ss_pred HHHHhcCCCCCeEEEEcC--CChhHHHHHHHHHHcCCceEEEecc
Q 030411 128 QSVKSQFSPESKLLVVCQ--EGLRSAAAANKLEEAGFQNIACITS 170 (178)
Q Consensus 128 ~~~~~~~~~~~~iviyC~--~g~rs~~aa~~L~~~G~~~v~~l~G 170 (178)
....+.++.+..++|.++ +|.-...+...+.+ +++++++.|
T Consensus 49 ~~~i~~~~~~~~vivltDl~GGSp~n~a~~~~~~--~~~~~vIsG 91 (116)
T TIGR00824 49 NAALADLDTEEEVLFLVDIFGGSPYNAAARIIVD--KPHMDVIAG 91 (116)
T ss_pred HHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHhh--cCCEEEEEe
Confidence 344555666778888887 35444444444444 346776654
No 175
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=48.48 E-value=58 Score=27.98 Aligned_cols=42 Identities=14% Similarity=0.153 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHc---------CC-----ceEEEeccccccccC
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEA---------GF-----QNIACITSGLQTVKP 177 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~---------G~-----~~v~~l~GG~~~w~~ 177 (178)
.+-.-+++|++|..+..+|-.|.+. |. ++|-.+.|+|++|..
T Consensus 101 ~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~ 156 (431)
T TIGR03251 101 PALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSG 156 (431)
T ss_pred CCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcch
Confidence 3445688999999988877777642 31 457888999998854
No 176
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=48.44 E-value=31 Score=23.02 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=18.7
Q ss_pred eEEEEcCCChhHH-HHH----HHHHHcCCceEEEe
Q 030411 139 KLLVVCQEGLRSA-AAA----NKLEEAGFQNIACI 168 (178)
Q Consensus 139 ~iviyC~~g~rs~-~aa----~~L~~~G~~~v~~l 168 (178)
+|++.|.+|..+. .++ ..|.+.|++ +.+.
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~-~~v~ 37 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIP-VELI 37 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCe-EEEE
Confidence 6999999998444 333 345667874 4433
No 177
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=48.20 E-value=37 Score=28.94 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
...+++|||++-..+..++..|...|+. +..+.|++.
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~l~g~~~ 280 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKAGIN-CCYLEGEMV 280 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCC-EEEecCCCC
Confidence 4568999999988889999999999986 788888764
No 178
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=48.04 E-value=35 Score=30.01 Aligned_cols=35 Identities=26% Similarity=0.515 Sum_probs=28.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSG 171 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG 171 (178)
.+.+|+|+.+ |.....+|..|.+.|+.++.+++|.
T Consensus 20 ~~~kIvIIGA-G~AGLaAA~rLle~gf~~~~IlEa~ 54 (498)
T KOG0685|consen 20 GNAKIVIIGA-GIAGLAAATRLLENGFIDVLILEAS 54 (498)
T ss_pred CCceEEEECC-chHHHHHHHHHHHhCCceEEEEEec
Confidence 4557888865 6777889999999999999999864
No 179
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=47.86 E-value=36 Score=27.97 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=28.3
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEec
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACIT 169 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l~ 169 (178)
+++++||+++ +|.+-..+++.|++.|-++|+.+.
T Consensus 200 ~gr~viIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I~~~~ 236 (304)
T PRK03092 200 EGRTCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAA 236 (304)
T ss_pred CCCEEEEEccccCcHHHHHHHHHHHHhcCCCeEEEEE
Confidence 4678999876 788888999999999999887553
No 180
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=47.74 E-value=34 Score=29.97 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=28.5
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
++++||++++ +|.+...+++.|++.|-+.|++.
T Consensus 352 ~gk~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~ 387 (469)
T PRK05793 352 EGKRVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFR 387 (469)
T ss_pred CCCEEEEEccccCchHHHHHHHHHHHHcCCCEEEEE
Confidence 5688999998 58889999999999999888765
No 181
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=47.49 E-value=29 Score=30.51 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=29.1
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEec
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACIT 169 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l~ 169 (178)
++++|+++++ +|.++..+++.|++.|.++|++..
T Consensus 347 ~gk~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~ 383 (475)
T PRK07631 347 EGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRI 383 (475)
T ss_pred CCceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEE
Confidence 4788999998 588999999999999999887643
No 182
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=47.41 E-value=57 Score=27.83 Aligned_cols=51 Identities=16% Similarity=0.250 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc-----CC----ceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA-----GF----QNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~-----G~----~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+. ..-+++|++|..+..+|-.|.+. |. ++|..++|||.+|.
T Consensus 86 ~la~~L~~~~~~-~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t 145 (408)
T PRK04612 86 KLAEELVTASRF-AEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRT 145 (408)
T ss_pred HHHHHHHhhCCC-CCEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCcc
Confidence 444444443333 35788899999888777766553 42 35778899999885
No 183
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=47.39 E-value=82 Score=26.46 Aligned_cols=35 Identities=14% Similarity=0.081 Sum_probs=26.4
Q ss_pred eeeCHHHHHHHhhcCCeEEEeeCChhhhhh---ccCCC
Q 030411 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYNR---AHIKS 83 (178)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~---ghIpg 83 (178)
+-..-.++...+.+.+..+||+|+..+|.+ |.++.
T Consensus 150 TGsGKT~iL~~L~~~~~~vlDlE~~aehrGS~fG~~~~ 187 (345)
T PRK11784 150 TGSGKTELLQALANAGAQVLDLEGLANHRGSSFGRLGG 187 (345)
T ss_pred CcccHHHHHHHHHhcCCeEEECCchhhhccccccCCCC
Confidence 445566777777766788999999999976 55555
No 184
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=47.24 E-value=49 Score=29.24 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=30.3
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 139 KLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 139 ~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
.+||+|++......++..|...||. +..|-|.+.
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~g~~-~~~lhG~l~ 308 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKRGFK-VAALHGDLP 308 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHCCCe-EEEecCCCC
Confidence 5999999999999999999999986 888888764
No 185
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=47.22 E-value=53 Score=28.67 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=41.4
Q ss_pred hHHHHHHHhcCCC-CCeEEEEcCCChhHHHHHHHHHHc--CCceEEEecccccccc
Q 030411 124 PEFVQSVKSQFSP-ESKLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVK 176 (178)
Q Consensus 124 ~~~~~~~~~~~~~-~~~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~ 176 (178)
.++.+.+.+.++. ..+.+++.++|..+..+|-.+.+. |-.+|-...|+|++..
T Consensus 102 v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T 157 (447)
T COG0160 102 VELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRT 157 (447)
T ss_pred HHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccc
Confidence 5677776666666 577888889999999888888775 6667888999998764
No 186
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=46.88 E-value=31 Score=30.05 Aligned_cols=33 Identities=15% Similarity=0.259 Sum_probs=28.5
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
++++|+|+++ +|.++..+++.|++.|.+.|.+.
T Consensus 333 ~gk~VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~ 368 (442)
T PRK08341 333 NGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVR 368 (442)
T ss_pred CCCEEEEEeeeeccHHHHHHHHHHHHhcCCcEEEEE
Confidence 5788999998 68999999999999999877654
No 187
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=46.75 E-value=33 Score=29.80 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=28.5
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
++++|+|+++ +|.+...+++.|++.|-+.|++.
T Consensus 339 ~gK~VlLVDDvitTG~Tl~~a~~~Lr~aGA~~V~v~ 374 (445)
T PRK08525 339 EGKRIVVIDDSIVRGTTSKKIVSLLRAAGAKEIHLR 374 (445)
T ss_pred CCCeEEEEecccCcHHHHHHHHHHHHhcCCCEEEEE
Confidence 4788999998 68888999999999999888754
No 188
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=46.75 E-value=38 Score=27.47 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=27.7
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
++++++|+++ +|.+...+++.|++.|-++|+.+
T Consensus 203 ~Gk~VlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~ 238 (285)
T PRK00934 203 KGKDVLIVDDIISTGGTMATAIKILKEQGAKKVYVA 238 (285)
T ss_pred CCCEEEEEcCccccHHHHHHHHHHHHHCCCCEEEEE
Confidence 5778999976 78888999999999998877744
No 189
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=46.48 E-value=33 Score=30.75 Aligned_cols=37 Identities=14% Similarity=0.311 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
.+.+++|||++...+..++..|...|+. +..+.|++.
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~g~~-v~~lhg~l~ 292 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERHGYR-VGVLSGDVP 292 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHcCCC-EEEEeCCCC
Confidence 4668999999988899999999999985 888887754
No 190
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=46.39 E-value=39 Score=28.75 Aligned_cols=37 Identities=11% Similarity=0.211 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
...+++|||++...+..++..|...|++ +..+.|++.
T Consensus 254 ~~~~~lVF~~t~~~~~~l~~~L~~~g~~-v~~lhg~~~ 290 (423)
T PRK04837 254 WPDRAIIFANTKHRCEEIWGHLAADGHR-VGLLTGDVA 290 (423)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhCCCc-EEEecCCCC
Confidence 3567999999988888999999999985 888888764
No 191
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=46.25 E-value=31 Score=23.65 Aligned_cols=26 Identities=15% Similarity=0.452 Sum_probs=18.8
Q ss_pred CeEEEEcCCChhHHHHHHHH----HHcCCc
Q 030411 138 SKLLVVCQEGLRSAAAANKL----EEAGFQ 163 (178)
Q Consensus 138 ~~iviyC~~g~rs~~aa~~L----~~~G~~ 163 (178)
++|++.|..|..+...+..+ ++.|++
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~~gi~ 33 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEKYEVP 33 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHCCCC
Confidence 57999999999887777443 445654
No 192
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=46.09 E-value=29 Score=31.13 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEecccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGL 172 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 172 (178)
-+.++||+.+.-..+-.+|..|.++||+ ++.|-||-
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~g~~-~~tlHg~k 551 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKAGYK-VTTLHGGK 551 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhccce-EEEeeCCc
Confidence 3678999999877788999999999995 99999874
No 193
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=45.88 E-value=37 Score=28.94 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=30.1
Q ss_pred eEEEEcCCChhHHHHHHHHHHc--CCceEEEecccccccc
Q 030411 139 KLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVK 176 (178)
Q Consensus 139 ~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~ 176 (178)
+++++|++|..+..+|-.|.+. |-++|..++|||++|.
T Consensus 100 ~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 139 (412)
T TIGR02407 100 KVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMT 139 (412)
T ss_pred eEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCch
Confidence 5677789999988888877664 5556888899999885
No 194
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=45.88 E-value=26 Score=21.68 Aligned_cols=21 Identities=52% Similarity=0.847 Sum_probs=13.7
Q ss_pred eEEEEcCCCh-hHHHHHHHHHH
Q 030411 139 KLLVVCQEGL-RSAAAANKLEE 159 (178)
Q Consensus 139 ~iviyC~~g~-rs~~aa~~L~~ 159 (178)
+++++|++|. .|..+...|++
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~ 22 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEK 22 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHH
Confidence 4789999884 44455555444
No 195
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=45.87 E-value=36 Score=30.11 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=28.5
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
++++|+|+++ +|.++..+++.|++.|-+.|++.
T Consensus 376 ~gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~ 411 (500)
T PRK07349 376 AGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMR 411 (500)
T ss_pred CCCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEE
Confidence 5789999998 69999999999999999877653
No 196
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=45.86 E-value=40 Score=28.11 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=28.0
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
+++++||+++ +|.+...++..|++.|-+.|+.+
T Consensus 217 ~Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~ 252 (332)
T PRK00553 217 KNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCVM 252 (332)
T ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCcEEEEE
Confidence 5678999977 78888999999999999887754
No 197
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=45.85 E-value=54 Score=27.11 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=38.2
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHH--------cCCceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEE--------AGFQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~--------~G~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+....-+++|++|..+...|-.|.+ .|-.+|-...|+|+++.
T Consensus 63 ~la~~L~~~~p~~~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t 122 (339)
T PF00202_consen 63 ELAEKLAELFPGGLDRVFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRT 122 (339)
T ss_dssp HHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSS
T ss_pred hhhhhhhhccccccceeeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccC
Confidence 45556666666667788999999998888877766 25567888899998764
No 198
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=45.61 E-value=60 Score=27.85 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=33.7
Q ss_pred HHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc--------CCceEEEecccccccc
Q 030411 126 FVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA--------GFQNIACITSGLQTVK 176 (178)
Q Consensus 126 ~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~--------G~~~v~~l~GG~~~w~ 176 (178)
+.+...+..+.+-.-+++|++|..+..+|..+... |-.+|-.+.|||.++.
T Consensus 93 la~~l~~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t 151 (427)
T TIGR00508 93 LCQKLVKMTPNALDCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDT 151 (427)
T ss_pred HHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCcc
Confidence 44444443444435788899998888777666553 3456888899998874
No 199
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=45.21 E-value=42 Score=29.15 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=29.0
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEec
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACIT 169 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l~ 169 (178)
++++|+++++ +|.+...++..|++.|.+.|.+.-
T Consensus 337 ~gk~v~lvDD~ittG~T~~~~~~~l~~~ga~~v~~~~ 373 (442)
T TIGR01134 337 RGKRVVLVDDSIVRGTTSRQIVKMLRDAGAKEVHVRI 373 (442)
T ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEE
Confidence 4688999998 588999999999999998887543
No 200
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=45.04 E-value=46 Score=24.59 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=26.4
Q ss_pred CCCCeEEEEcC---CChhHHHHHHHHHHcCCceEE
Q 030411 135 SPESKLLVVCQ---EGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 135 ~~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~ 166 (178)
.++++|+|+++ +|.+...++..|++.|.+.+.
T Consensus 107 ~~gk~VLIVDDIitTG~Tl~~a~~~L~~~Ga~~v~ 141 (169)
T TIGR01090 107 KPGQRVLIVDDLLATGGTAEATDELIRKLGGEVVE 141 (169)
T ss_pred CCcCEEEEEeccccchHHHHHHHHHHHHcCCEEEE
Confidence 36789999987 788888999999999986443
No 201
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=44.65 E-value=41 Score=27.74 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=12.6
Q ss_pred HHHHHHhhcCCeEEEeeCCh
Q 030411 54 EEAKNLIAVERYAVLDVRDN 73 (178)
Q Consensus 54 ~e~~~~l~~~~~~lIDvR~~ 73 (178)
.++.++.+..+..|+|||.+
T Consensus 77 pel~~~A~~~g~~i~DvR~p 96 (301)
T PF07755_consen 77 PELAAAAKKNGVRIIDVRKP 96 (301)
T ss_dssp HHHHCCHHCCT--EEETTS-
T ss_pred HHHHHHHHHcCCeEeeccCC
Confidence 45566666668899999997
No 202
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=44.09 E-value=36 Score=29.91 Aligned_cols=33 Identities=9% Similarity=0.166 Sum_probs=28.0
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
++++|+++++ +|.++..++..|++.|.++|.+.
T Consensus 355 ~gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~~r 390 (474)
T PRK06388 355 SGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVR 390 (474)
T ss_pred cCceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEE
Confidence 4678999998 58899999999999999887654
No 203
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=44.03 E-value=1e+02 Score=25.49 Aligned_cols=31 Identities=23% Similarity=0.198 Sum_probs=20.3
Q ss_pred HHHHHHhhcCCeEEEeeCChhhhhhccCCCe
Q 030411 54 EEAKNLIAVERYAVLDVRDNSQYNRAHIKSS 84 (178)
Q Consensus 54 ~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgA 84 (178)
+++.+++..=+.+|.|+--.-.....-|||+
T Consensus 13 ~~~~e~l~~~DtfifDcDGVlW~g~~~ipGs 43 (306)
T KOG2882|consen 13 EEARELLDSFDTFIFDCDGVLWLGEKPIPGS 43 (306)
T ss_pred HHHHHHHhhcCEEEEcCCcceeecCCCCCCh
Confidence 5667778766888999865444444556665
No 204
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=43.80 E-value=38 Score=30.60 Aligned_cols=37 Identities=19% Similarity=0.386 Sum_probs=31.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
++.+.||||++-..+..++..|...|+. +..+-||+.
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~g~~-v~~~Ha~l~ 271 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSRGIS-AAAYHAGLD 271 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCC-EEEecCCCC
Confidence 4677899999988888999999999986 777778764
No 205
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=43.73 E-value=66 Score=27.23 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=35.0
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc--CCceEEEecccccccc
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVK 176 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~ 176 (178)
.++.+.+.+..+.. .-|++|++|..+..+|-.+.+. |-++|...+++|.+|.
T Consensus 91 ~~lae~l~~~~~~~-~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~ 144 (423)
T TIGR00713 91 ILLAKEIISRVPSV-EMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHH 144 (423)
T ss_pred HHHHHHHHHhCCcc-cEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCCh
Confidence 44555555545433 3477899999888877776544 5567888888888864
No 206
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=43.68 E-value=53 Score=24.60 Aligned_cols=31 Identities=26% Similarity=0.234 Sum_probs=25.5
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~ 166 (178)
++++|+|+++ +|.....+++.|++.|-+.|.
T Consensus 119 ~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~~V~ 152 (178)
T PRK07322 119 KGKRVAIVDDVVSTGGTLTALERLVERAGGQVVA 152 (178)
T ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCEEEE
Confidence 5678999987 688888999999999976444
No 207
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=43.62 E-value=53 Score=25.30 Aligned_cols=32 Identities=31% Similarity=0.377 Sum_probs=25.9
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIAC 167 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~ 167 (178)
.+++|++.++ +|.....+.+.|++.|-++|.+
T Consensus 123 ~~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~~ 157 (209)
T PRK00129 123 DERTVIVVDPMLATGGSAIAAIDLLKKRGAKNIKV 157 (209)
T ss_pred CCCEEEEECCcccchHHHHHHHHHHHHcCCCEEEE
Confidence 4567888875 7889999999999999877664
No 208
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=43.45 E-value=37 Score=22.19 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
.+.||++.- ..-.......|+..+.++++++ ||-.
T Consensus 49 ~~~PIll~~--~~l~~~~~~~l~~~~~~~v~ii-Gg~~ 83 (92)
T PF04122_consen 49 NNAPILLVN--NSLPSSVKAFLKSLNIKKVYII-GGEG 83 (92)
T ss_pred cCCeEEEEC--CCCCHHHHHHHHHcCCCEEEEE-CCCC
Confidence 355665555 4455788888999999999888 6654
No 209
>PLN02541 uracil phosphoribosyltransferase
Probab=43.42 E-value=53 Score=26.23 Aligned_cols=32 Identities=31% Similarity=0.321 Sum_probs=25.1
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCc--eEEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQ--NIAC 167 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~--~v~~ 167 (178)
.+++|+++++ +|.....+.+.|++.|.+ ++.+
T Consensus 156 ~~~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I~~ 192 (244)
T PLN02541 156 EGSRVLVVDPMLATGGTIVAAIDELVSRGASVEQIRV 192 (244)
T ss_pred CCCEEEEECcchhhhHHHHHHHHHHHHcCCCcccEEE
Confidence 3457888876 788889999999999986 5543
No 210
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=43.26 E-value=80 Score=27.63 Aligned_cols=39 Identities=13% Similarity=0.144 Sum_probs=29.2
Q ss_pred eEEEEcCCChhHHHHHHHHHHc-----C---CceEEEeccccccccC
Q 030411 139 KLLVVCQEGLRSAAAANKLEEA-----G---FQNIACITSGLQTVKP 177 (178)
Q Consensus 139 ~iviyC~~g~rs~~aa~~L~~~-----G---~~~v~~l~GG~~~w~~ 177 (178)
.-|++|++|..+..+|-.|.+. | -++|-.++|+|.+|..
T Consensus 130 ~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~ 176 (472)
T PRK08742 130 SKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETI 176 (472)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCch
Confidence 4689999999888777776542 2 3568888999998853
No 211
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=43.10 E-value=75 Score=23.25 Aligned_cols=40 Identities=20% Similarity=0.332 Sum_probs=30.4
Q ss_pred CCCCCeEEEEcCC--Ch--hHHHHHHHHHHcCCceEEEeccccc
Q 030411 134 FSPESKLLVVCQE--GL--RSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 134 ~~~~~~iviyC~~--g~--rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
+..+..+|.+|.. +. ....+.+.|++.|.+.+.++-||.-
T Consensus 60 ~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGvi 103 (143)
T COG2185 60 VEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGVI 103 (143)
T ss_pred HhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCcc
Confidence 4577889999973 22 3456778899999999998888863
No 212
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=42.85 E-value=53 Score=24.32 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=26.8
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIAC 167 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~ 167 (178)
++++|+|+++ +|.+...+...|++.|.+++++
T Consensus 83 ~gk~vlivDDii~TG~Tl~~~~~~l~~~g~~~i~~ 117 (166)
T TIGR01203 83 KGKDVLIVEDIVDTGLTLQYLLDLLKARKPKSLKI 117 (166)
T ss_pred CCCEEEEEeeeeCcHHHHHHHHHHHHHCCCCEEEE
Confidence 4788999976 7889999999999999877663
No 213
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=42.72 E-value=55 Score=25.20 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=26.3
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
.++.|+++++ +|.....+.+.|++.|.++|.++
T Consensus 121 ~~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~v~ 156 (207)
T TIGR01091 121 DERTVIVLDPMLATGGTMIAALDLLKKRGAKKIKVL 156 (207)
T ss_pred CCCEEEEECCCccchHHHHHHHHHHHHcCCCEEEEE
Confidence 3567888775 78888999999999998876643
No 214
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=42.52 E-value=82 Score=19.48 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=25.8
Q ss_pred HHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCc
Q 030411 130 VKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQ 163 (178)
Q Consensus 130 ~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~ 163 (178)
.+..++.+..+.+..+.......+..+.+..||+
T Consensus 19 ~l~~l~~G~~l~V~~dd~~s~~di~~~~~~~g~~ 52 (69)
T cd03423 19 KVRKMKPGDTLLVLATDPSTTRDIPKFCTFLGHE 52 (69)
T ss_pred HHHcCCCCCEEEEEeCCCchHHHHHHHHHHcCCE
Confidence 3556677777777766656667899999999997
No 215
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=42.42 E-value=51 Score=27.06 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=28.1
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEec
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACIT 169 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l~ 169 (178)
+++++||+++ +|.+...+++.|++.|.++|+.+.
T Consensus 201 ~g~~viivDDii~TG~Tl~~a~~~l~~~Ga~~v~~~~ 237 (302)
T PLN02369 201 KGKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACA 237 (302)
T ss_pred CCCEEEEEcCcccchHHHHHHHHHHHhCCCCEEEEEE
Confidence 4677888876 788888999999999998887554
No 216
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=42.16 E-value=65 Score=23.89 Aligned_cols=31 Identities=29% Similarity=0.392 Sum_probs=26.0
Q ss_pred CCCCeEEEEcC---CChhHHHHHHHHHHcCCceE
Q 030411 135 SPESKLLVVCQ---EGLRSAAAANKLEEAGFQNI 165 (178)
Q Consensus 135 ~~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v 165 (178)
.++++|+|+++ +|.+-..+++.|++.|.+.+
T Consensus 112 ~~g~~VLIVDDivtTG~Tl~~~~~~l~~~Ga~~v 145 (175)
T PRK02304 112 KPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVV 145 (175)
T ss_pred CCCCEEEEEeCCccccHHHHHHHHHHHHcCCEEE
Confidence 56889999987 68888889999999998654
No 217
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=42.12 E-value=41 Score=28.94 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=30.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 137 ESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 137 ~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
..+++++|++-..+..++..|...|+. +..+.|++.
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~~~~-v~~~hg~~~ 277 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQGFS-ALALHGDLE 277 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhCCCc-EEEEeCCCC
Confidence 456899999988889999999999985 778888765
No 218
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=42.11 E-value=37 Score=22.05 Aligned_cols=26 Identities=38% Similarity=0.762 Sum_probs=16.3
Q ss_pred CeEEEEcCCChhHHHH-H----HHHHHcCCc
Q 030411 138 SKLLVVCQEGLRSAAA-A----NKLEEAGFQ 163 (178)
Q Consensus 138 ~~iviyC~~g~rs~~a-a----~~L~~~G~~ 163 (178)
.+|+++|.+|.-+... + ..+.+.|..
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~~~~~ 31 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKKAGLE 31 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCCc
Confidence 3689999988755433 3 345555653
No 219
>PLN02440 amidophosphoribosyltransferase
Probab=42.00 E-value=43 Score=29.46 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=28.7
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEec
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACIT 169 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l~ 169 (178)
++++|+|+++ +|.+...+++.|++.|.+.|++..
T Consensus 339 ~gk~VlLVDDiittGtTl~~i~~~L~~aGa~~V~v~v 375 (479)
T PLN02440 339 EGKRVVVVDDSIVRGTTSSKIVRMLREAGAKEVHMRI 375 (479)
T ss_pred cCceEEEEeceeCcHHHHHHHHHHHHhcCCCEEEEEE
Confidence 4678999988 688999999999999998887543
No 220
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=41.95 E-value=44 Score=28.83 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=30.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
...+++|||++-..+..++..|...|+. +..+.|++.
T Consensus 244 ~~~~~lVF~~t~~~~~~l~~~L~~~g~~-~~~lhg~~~ 280 (456)
T PRK10590 244 NWQQVLVFTRTKHGANHLAEQLNKDGIR-SAAIHGNKS 280 (456)
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHCCCC-EEEEECCCC
Confidence 3467999999988888999999999986 777777764
No 221
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=41.85 E-value=1.1e+02 Score=20.83 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=24.0
Q ss_pred HHHHHhcCCCCCeEEEEcC--CChhHHHHHHHHHHcCCceEEEecc
Q 030411 127 VQSVKSQFSPESKLLVVCQ--EGLRSAAAANKLEEAGFQNIACITS 170 (178)
Q Consensus 127 ~~~~~~~~~~~~~iviyC~--~g~rs~~aa~~L~~~G~~~v~~l~G 170 (178)
+....+.++.+..+++.|+ +|.-...++..+.+ +++++++.|
T Consensus 47 l~~~i~~~~~~~~vlil~Dl~ggsp~n~a~~~~~~--~~~~~vi~G 90 (116)
T PF03610_consen 47 LEEAIEELDEGDGVLILTDLGGGSPFNEAARLLLD--KPNIRVISG 90 (116)
T ss_dssp HHHHHHHCCTTSEEEEEESSTTSHHHHHHHHHHCT--STTEEEEES
T ss_pred HHHHHHhccCCCcEEEEeeCCCCccchHHHHHhcc--CCCEEEEec
Confidence 3344455677889999998 34334444444433 344656554
No 222
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=41.49 E-value=61 Score=25.29 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=18.7
Q ss_pred HHHHHHHcCCceEEEec-cccccccC
Q 030411 153 AANKLEEAGFQNIACIT-SGLQTVKP 177 (178)
Q Consensus 153 aa~~L~~~G~~~v~~l~-GG~~~w~~ 177 (178)
|-..|+.+||.||.+.. .|..+|.+
T Consensus 110 A~~~L~~lg~~nV~v~~gDG~~G~~~ 135 (209)
T COG2518 110 ARRNLETLGYENVTVRHGDGSKGWPE 135 (209)
T ss_pred HHHHHHHcCCCceEEEECCcccCCCC
Confidence 33458889999988665 48899865
No 223
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=41.30 E-value=60 Score=31.91 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=31.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
.+...||||.+-.....++..|...|++ +..+-||+.
T Consensus 679 ~~esgIIYC~SRke~E~LAe~L~~~Gik-a~~YHAGLs 715 (1195)
T PLN03137 679 FDECGIIYCLSRMDCEKVAERLQEFGHK-AAFYHGSMD 715 (1195)
T ss_pred cCCCceeEeCchhHHHHHHHHHHHCCCC-eeeeeCCCC
Confidence 3556899999988888999999999996 788888874
No 224
>PRK11018 hypothetical protein; Provisional
Probab=41.10 E-value=95 Score=19.84 Aligned_cols=34 Identities=15% Similarity=0.082 Sum_probs=27.0
Q ss_pred HHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCc
Q 030411 130 VKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQ 163 (178)
Q Consensus 130 ~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~ 163 (178)
.++.++.+..+.+.++.......+..+++..||+
T Consensus 28 ~l~~l~~G~~L~V~~d~~~a~~di~~~~~~~G~~ 61 (78)
T PRK11018 28 ALPQLKKGEILEVVSDCPQSINNIPLDARNHGYT 61 (78)
T ss_pred HHHhCCCCCEEEEEeCCccHHHHHHHHHHHcCCE
Confidence 3566777888888888766667889999999997
No 225
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=40.99 E-value=34 Score=29.41 Aligned_cols=33 Identities=12% Similarity=0.321 Sum_probs=28.2
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 140 LLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 140 iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
-||+|.+-..+.+.+..|...||+ |.+|.|-+.
T Consensus 333 siIFc~tk~ta~~l~~~m~~~Gh~-V~~l~G~l~ 365 (477)
T KOG0332|consen 333 SIIFCHTKATAMWLYEEMRAEGHQ-VSLLHGDLT 365 (477)
T ss_pred eEEEEeehhhHHHHHHHHHhcCce-eEEeeccch
Confidence 477888878888999999999996 999988764
No 226
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=40.76 E-value=87 Score=27.00 Aligned_cols=48 Identities=15% Similarity=0.199 Sum_probs=31.9
Q ss_pred HHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc-CC----ceEEEecccccc
Q 030411 126 FVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA-GF----QNIACITSGLQT 174 (178)
Q Consensus 126 ~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~-G~----~~v~~l~GG~~~ 174 (178)
+.+.+.+..+ +..-|++|++|..+..+|-.|.+. ++ .+|....++|++
T Consensus 89 la~~L~~~s~-~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHG 141 (404)
T COG4992 89 LAEKLVELSP-FADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHG 141 (404)
T ss_pred HHHHHHhhCc-cccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCC
Confidence 3333333333 567899999999999888877554 33 246666777765
No 227
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=40.74 E-value=37 Score=28.94 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=24.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEE
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~ 166 (178)
.+.++++.+.+|..|..+++.+.+.|++ +.
T Consensus 175 ~~gkvvvllSGGiDS~vaa~l~~k~G~~-v~ 204 (394)
T PRK01565 175 TSGKALLLLSGGIDSPVAGYLAMKRGVE-IE 204 (394)
T ss_pred CCCCEEEEECCChhHHHHHHHHHHCCCE-EE
Confidence 4567888889999999999999889984 44
No 228
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=40.16 E-value=49 Score=28.81 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=27.9
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
+++.+||+++ +|.+-..+++.|++.|-++|+.+
T Consensus 334 ~Gk~vIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~~~ 369 (439)
T PTZ00145 334 YDSDVIIVDDMIDTSGTLCEAAKQLKKHGARRVFAF 369 (439)
T ss_pred CCCEEEEEcceeCcHHHHHHHHHHHHHcCCCEEEEE
Confidence 4578899876 78888899999999999988854
No 229
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=39.56 E-value=53 Score=28.47 Aligned_cols=37 Identities=14% Similarity=0.260 Sum_probs=30.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
...++|+||++-..+...+..|...|+. +..+.|++.
T Consensus 334 ~~~~~IVF~~s~~~~~~l~~~L~~~~~~-~~~~~g~~~ 370 (475)
T PRK01297 334 PWERVMVFANRKDEVRRIEERLVKDGIN-AAQLSGDVP 370 (475)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCC-EEEEECCCC
Confidence 3458999999988888899999999986 777777764
No 230
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=39.53 E-value=49 Score=28.30 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=20.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCc
Q 030411 138 SKLLVVCQEGLRSAAAANKLEEAGFQ 163 (178)
Q Consensus 138 ~~iviyC~~g~rs~~aa~~L~~~G~~ 163 (178)
.+++..-.+|..|..|++.+.+.|..
T Consensus 176 Gk~l~LlSGGIDSPVA~~l~mkRG~~ 201 (383)
T COG0301 176 GKVLLLLSGGIDSPVAAWLMMKRGVE 201 (383)
T ss_pred CcEEEEEeCCCChHHHHHHHHhcCCE
Confidence 35566667788888888888888875
No 231
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=39.22 E-value=55 Score=26.28 Aligned_cols=92 Identities=14% Similarity=0.285 Sum_probs=51.1
Q ss_pred eeCHHHHHHHhhc----CCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChH
Q 030411 50 YVNAEEAKNLIAV----ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPE 125 (178)
Q Consensus 50 ~Is~~e~~~~l~~----~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 125 (178)
.++.+++.++++. +=-.+|.|++.+|.+...--|+.-+-...= + ......+.+
T Consensus 141 ~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnR----d-------------------L~tf~vd~~ 197 (254)
T PF00218_consen 141 ILSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNR----D-------------------LKTFEVDLN 197 (254)
T ss_dssp GSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESB----C-------------------TTTCCBHTH
T ss_pred hCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCc----c-------------------ccCcccChH
Confidence 3556665655532 345799999999987643223322222110 0 000111123
Q ss_pred HHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEE
Q 030411 126 FVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 126 ~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~ 166 (178)
........++++ ++++..+|..+..-+..|...|++.+.
T Consensus 198 ~~~~l~~~ip~~--~~~iseSGI~~~~d~~~l~~~G~davL 236 (254)
T PF00218_consen 198 RTEELAPLIPKD--VIVISESGIKTPEDARRLARAGADAVL 236 (254)
T ss_dssp HHHHHHCHSHTT--SEEEEESS-SSHHHHHHHCTTT-SEEE
T ss_pred HHHHHHhhCccc--eeEEeecCCCCHHHHHHHHHCCCCEEE
Confidence 334445556644 678888999999999999999998543
No 232
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=39.11 E-value=85 Score=23.05 Aligned_cols=48 Identities=17% Similarity=0.291 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEecccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGL 172 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 172 (178)
+++......+.++..++++..+......+...|++.||.-...-+.|+
T Consensus 121 ~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~ 168 (179)
T TIGR00537 121 RFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERGL 168 (179)
T ss_pred HHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEeec
Confidence 455555555677777766655444477888999999997444444443
No 233
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=39.00 E-value=51 Score=31.66 Aligned_cols=38 Identities=24% Similarity=0.475 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHH-HHcCCceEEEecccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKL-EEAGFQNIACITSGLQT 174 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L-~~~G~~~v~~l~GG~~~ 174 (178)
.+.++||+|++.......+..| ...|++ +..+.||+..
T Consensus 492 ~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~-~~~ihG~~s~ 530 (956)
T PRK04914 492 RSEKVLVICAKAATALQLEQALREREGIR-AAVFHEGMSI 530 (956)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHhhccCee-EEEEECCCCH
Confidence 3678999999988888999999 567986 7788888753
No 234
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=38.82 E-value=43 Score=20.99 Aligned_cols=29 Identities=17% Similarity=0.441 Sum_probs=23.6
Q ss_pred CceeeCHHHHHHHhhcC-CeEEEeeCChhh
Q 030411 47 DVNYVNAEEAKNLIAVE-RYAVLDVRDNSQ 75 (178)
Q Consensus 47 ~~~~Is~~e~~~~l~~~-~~~lIDvR~~~e 75 (178)
.-.+|+.+++.+++..+ ++.++|..+-++
T Consensus 16 ~s~YiTL~di~~lV~~g~~~~V~D~ktgeD 45 (64)
T PF07879_consen 16 TSSYITLEDIAQLVREGEDFKVVDAKTGED 45 (64)
T ss_pred CceeEeHHHHHHHHHCCCeEEEEECCCCcc
Confidence 34689999999999765 788999997554
No 235
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=38.74 E-value=31 Score=30.33 Aligned_cols=14 Identities=21% Similarity=0.423 Sum_probs=8.4
Q ss_pred hhhhhhccCCCeEE
Q 030411 73 NSQYNRAHIKSSYH 86 (178)
Q Consensus 73 ~~e~~~ghIpgAvn 86 (178)
=-||+++|||-..+
T Consensus 70 LlefA~~~IPk~~h 83 (501)
T KOG1386|consen 70 LLEFAKEHIPKEKH 83 (501)
T ss_pred HHHHHHhhCCHhhc
Confidence 45667777775443
No 236
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=38.54 E-value=58 Score=27.79 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=27.1
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIAC 167 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~ 167 (178)
+++++||+++ +|.+-..++..|++.|.+.|++
T Consensus 263 ~gr~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~ 297 (382)
T PRK06827 263 EGKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIV 297 (382)
T ss_pred CCCEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEE
Confidence 4567999876 7888889999999999988875
No 237
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=38.37 E-value=32 Score=23.93 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=15.4
Q ss_pred CHHHHHHHhhcCCe-EEEeeCCh
Q 030411 52 NAEEAKNLIAVERY-AVLDVRDN 73 (178)
Q Consensus 52 s~~e~~~~l~~~~~-~lIDvR~~ 73 (178)
+.+++.+.+...++ +|||||..
T Consensus 1 ~~e~f~~~l~~~~i~~lVDVR~~ 23 (122)
T PF04343_consen 1 SIERFYDLLKKNGIRVLVDVRLW 23 (122)
T ss_pred CHHHHHHHHHHCCCeEEEEECCC
Confidence 35677777765544 79999963
No 238
>PRK10113 cell division modulator; Provisional
Probab=38.20 E-value=13 Score=23.55 Aligned_cols=39 Identities=5% Similarity=0.169 Sum_probs=28.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTV 175 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w 175 (178)
.+.+||-|...- .-+.-...++..||++|++|.|-|-++
T Consensus 8 qnr~visyvprv-epapp~ha~kmd~frDVW~LrGKYVAF 46 (80)
T PRK10113 8 QNRQIISYVPRV-EPAPPEHAIKMDSFRDVWMLRGKYVAF 46 (80)
T ss_pred cCCcceeecccC-CCCCchHhhhhcchhhhheeccceEEE
Confidence 467888888742 223345567888999999999987654
No 239
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=38.15 E-value=68 Score=30.18 Aligned_cols=37 Identities=16% Similarity=0.127 Sum_probs=31.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEecccc
Q 030411 135 SPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGL 172 (178)
Q Consensus 135 ~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 172 (178)
....+++|+|++...+...+..|.+.|++ +..|.|..
T Consensus 426 ~~~~pvLIf~~t~~~se~l~~~L~~~gi~-~~~L~~~~ 462 (790)
T PRK09200 426 ETGRPVLIGTGSIEQSETFSKLLDEAGIP-HNLLNAKN 462 (790)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHCCCC-EEEecCCc
Confidence 46789999999988999999999999996 67777764
No 240
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=37.85 E-value=1.1e+02 Score=27.09 Aligned_cols=52 Identities=10% Similarity=0.134 Sum_probs=34.4
Q ss_pred HHHHHHHhcCC-CCCeEEEEcCCChhHHHHHHHHHH-----cCC---ceEEEecccccccc
Q 030411 125 EFVQSVKSQFS-PESKLLVVCQEGLRSAAAANKLEE-----AGF---QNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~-~~~~iviyC~~g~rs~~aa~~L~~-----~G~---~~v~~l~GG~~~w~ 176 (178)
++.+.+.+.+. .+...+++|++|..+..+|-.+.+ .|. ++|..++++|.+|.
T Consensus 137 ~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t 197 (504)
T PLN02760 137 DLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGST 197 (504)
T ss_pred HHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCCh
Confidence 44444444433 333467889999988887777654 243 46788899999874
No 241
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=37.81 E-value=1e+02 Score=19.13 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=27.9
Q ss_pred HHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEE
Q 030411 130 VKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 130 ~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~ 166 (178)
.++.+..+..+.+.++.......+..+++..||+ +.
T Consensus 19 al~~l~~G~~l~V~~d~~~s~~ni~~~~~~~g~~-v~ 54 (69)
T cd03422 19 ALPSLKPGEILEVISDCPQSINNIPIDARNHGYK-VL 54 (69)
T ss_pred HHHcCCCCCEEEEEecCchHHHHHHHHHHHcCCE-EE
Confidence 3556677888888887766777888999999997 44
No 242
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=37.47 E-value=60 Score=27.10 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=27.9
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
++++++|+++ +|.+-..++..|++.|-+.|+.+
T Consensus 229 ~gr~vlIVDDIidTG~Tl~~aa~~L~~~Ga~~V~~~ 264 (326)
T PLN02297 229 AGRHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSAY 264 (326)
T ss_pred CCCeEEEEecccCcHHHHHHHHHHHHHCCCcEEEEE
Confidence 5678999976 78888899999999999888754
No 243
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=37.28 E-value=58 Score=27.16 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=28.0
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEec
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACIT 169 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l~ 169 (178)
+++++||+++ +|.+-..++..|++.|-++|+.+.
T Consensus 229 ~g~~viiVDDii~TG~T~~~a~~~L~~~Ga~~v~~~~ 265 (330)
T PRK02812 229 KGKTAILVDDMIDTGGTICEGARLLRKEGAKQVYACA 265 (330)
T ss_pred CCCEEEEEccccCcHHHHHHHHHHHhccCCCeEEEEE
Confidence 4677888876 688888999999999998887553
No 244
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=36.94 E-value=84 Score=26.25 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=29.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCc-eEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQ-NIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~-~v~~l~GG~~ 173 (178)
.+.+++|+|++...+...+..|+..|.. ++..+.|...
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~ 309 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAP 309 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCC
Confidence 4678999999988999999999987642 4666666543
No 245
>PLN02293 adenine phosphoribosyltransferase
Probab=36.83 E-value=83 Score=23.89 Aligned_cols=32 Identities=34% Similarity=0.421 Sum_probs=26.8
Q ss_pred CCCCCeEEEEcC---CChhHHHHHHHHHHcCCceE
Q 030411 134 FSPESKLLVVCQ---EGLRSAAAANKLEEAGFQNI 165 (178)
Q Consensus 134 ~~~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v 165 (178)
+.++++|+|+++ +|.....+.+.|++.|.+-+
T Consensus 122 i~~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga~~v 156 (187)
T PLN02293 122 VEPGERALVIDDLIATGGTLCAAINLLERAGAEVV 156 (187)
T ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHHCCCEEE
Confidence 567889999987 78888899999999997643
No 246
>PLN02347 GMP synthetase
Probab=36.79 E-value=89 Score=27.96 Aligned_cols=49 Identities=20% Similarity=0.399 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHH-cCCceEE--Eecccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEE-AGFQNIA--CITSGLQT 174 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~-~G~~~v~--~l~GG~~~ 174 (178)
+.++...+.+.++.++++-..+|..|..++..+.+ .|. ++. .++.|+..
T Consensus 217 ~~i~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~alG~-~v~av~id~g~~~ 268 (536)
T PLN02347 217 EQIELIKATVGPDEHVICALSGGVDSTVAATLVHKAIGD-RLHCVFVDNGLLR 268 (536)
T ss_pred HHHHHHHHHhccCCeEEEEecCChhHHHHHHHHHHHhCC-cEEEEEEeCCCCC
Confidence 44455555566677888888999999999999988 684 455 55656543
No 247
>PRK12403 putative aminotransferase; Provisional
Probab=36.60 E-value=1.2e+02 Score=26.34 Aligned_cols=52 Identities=10% Similarity=0.038 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc-----CC---ceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA-----GF---QNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~-----G~---~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+.+-.-+++|++|..+..+|-.+.+. |- ..|....+||++|.
T Consensus 102 ~lae~L~~~~p~~~~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t 161 (460)
T PRK12403 102 ELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGST 161 (460)
T ss_pred HHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCccc
Confidence 455555555554435678899999988877776542 42 22446678898873
No 248
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=36.59 E-value=62 Score=28.78 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=28.2
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
++++|+++++ +|.++..+++.|++.|-++|.+-
T Consensus 366 ~gk~vllVDD~ittG~T~~~~~~~L~~~ga~~v~~r 401 (510)
T PRK07847 366 RGKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVR 401 (510)
T ss_pred CCCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEE
Confidence 5688999988 58899999999999999887653
No 249
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=36.42 E-value=65 Score=28.41 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=28.7
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEec
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACIT 169 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l~ 169 (178)
++++|+++++ +|.+...+++.|++.|-+.|.+..
T Consensus 349 ~gk~vllVDDvittG~T~~~~~~~L~~~Ga~~v~~~~ 385 (484)
T PRK07272 349 KGKRVVMVDDSIVRGTTSRRIVQLLKEAGAKEVHVAI 385 (484)
T ss_pred CCCEEEEEccccCchHHHHHHHHHHHhcCCcEEEEEE
Confidence 4688999998 588899999999999998877553
No 250
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=36.40 E-value=81 Score=23.90 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=26.3
Q ss_pred CCCCeEEEEcC---CChhHHHHHHHHHHcCCceE
Q 030411 135 SPESKLLVVCQ---EGLRSAAAANKLEEAGFQNI 165 (178)
Q Consensus 135 ~~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v 165 (178)
.++++|+|+++ +|.+...++..|++.|.+.+
T Consensus 103 ~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~Ga~vv 136 (187)
T TIGR01367 103 KPGEKFVAVEDVVTTGGSLLEAIRAIEGQGGQVV 136 (187)
T ss_pred CCCCEEEEEEeeecchHHHHHHHHHHHHcCCeEE
Confidence 46889999998 78888899999999998644
No 251
>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]
Probab=36.17 E-value=1e+02 Score=25.79 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=29.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHc--CCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~ 173 (178)
++-.+.++|++|..+...|.+|.+. +++++..|+--|.
T Consensus 100 PeLsvc~F~NSGSEANDLALRLAR~ftkhqDvItldHAYH 139 (452)
T KOG1403|consen 100 PELSVCFFVNSGSEANDLALRLARNFTKHQDVITLDHAYH 139 (452)
T ss_pred CCceEEEEecCCchhhHHHHHHHHhhcccCceEEEechhc
Confidence 3477999999999999998888774 6677777765544
No 252
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=35.86 E-value=1.2e+02 Score=23.09 Aligned_cols=45 Identities=22% Similarity=0.436 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCCCCeEEEEcC-----C------Ch-------hHHHHHHHHHHcCCceEEEecc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQ-----E------GL-------RSAAAANKLEEAGFQNIACITS 170 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~-----~------g~-------rs~~aa~~L~~~G~~~v~~l~G 170 (178)
.|++.. ..-.+++|||++-. . +. ....+...|++.|++|+++++|
T Consensus 82 ~fv~~i-R~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g 144 (178)
T PF14606_consen 82 GFVKTI-REAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRKEGDKNLYYLDG 144 (178)
T ss_dssp HHHHHH-HTT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-H
T ss_pred HHHHHH-HHhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCc
Confidence 344443 33467899998852 1 11 1224555677789999999986
No 253
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=35.79 E-value=73 Score=30.40 Aligned_cols=39 Identities=10% Similarity=0.017 Sum_probs=33.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 134 FSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 134 ~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
...++||+|.|.+-..|...+..|.+.|+. ..+|.+...
T Consensus 441 ~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~-h~vLnak~~ 479 (896)
T PRK13104 441 GVRKQPVLVGTVSIEASEFLSQLLKKENIK-HQVLNAKFH 479 (896)
T ss_pred HhCCCCEEEEeCcHHHHHHHHHHHHHcCCC-eEeecCCCC
Confidence 468899999999988999999999999997 567766554
No 254
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=35.78 E-value=92 Score=27.90 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=29.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 137 ESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 137 ~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
+.+.||||++-..+..++..|...|+. +..+-||+.
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~g~~-~~~~H~~l~ 259 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQGIS-ALAYHAGLS 259 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCCC-EEEEECCCC
Confidence 567899999988888999999999986 666677764
No 255
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=35.50 E-value=1.2e+02 Score=22.52 Aligned_cols=47 Identities=19% Similarity=0.335 Sum_probs=32.7
Q ss_pred HHHHhcCCCCCeEEEEcCCCh--hHHHHHHHHH---HcCCceEEEeccccccc
Q 030411 128 QSVKSQFSPESKLLVVCQEGL--RSAAAANKLE---EAGFQNIACITSGLQTV 175 (178)
Q Consensus 128 ~~~~~~~~~~~~iviyC~~g~--rs~~aa~~L~---~~G~~~v~~l~GG~~~w 175 (178)
+.+...++++..+|+.+-.|. .|...|..|. ..| .++..+-||-.+-
T Consensus 58 ~~il~~i~~~~~vi~Ld~~Gk~~sSe~fA~~l~~~~~~G-~~i~f~IGG~~Gl 109 (155)
T COG1576 58 EAILAAIPKGSYVVLLDIRGKALSSEEFADFLERLRDDG-RDISFLIGGADGL 109 (155)
T ss_pred HHHHHhcCCCCeEEEEecCCCcCChHHHHHHHHHHHhcC-CeEEEEEeCcccC
Confidence 445566778877777776554 5777777765 457 7899888986654
No 256
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=35.33 E-value=73 Score=26.16 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=27.1
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
++++++|+++ +|.+...+++.|++.|-++|+.+
T Consensus 209 ~g~~vliVDDii~tG~Tl~~a~~~l~~~ga~~v~~~ 244 (308)
T TIGR01251 209 EGKDVVIVDDIIDTGGTIAKAAEILKSAGAKRVIAA 244 (308)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 5678888876 68888899999999999887754
No 257
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=34.98 E-value=51 Score=21.24 Aligned_cols=24 Identities=38% Similarity=0.720 Sum_probs=15.7
Q ss_pred eEEEEcCCChhHH-HHHH----HHHHcCC
Q 030411 139 KLLVVCQEGLRSA-AAAN----KLEEAGF 162 (178)
Q Consensus 139 ~iviyC~~g~rs~-~aa~----~L~~~G~ 162 (178)
+++++|.+|..+. .... .+.+.++
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~~~i 30 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKENGI 30 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCC
Confidence 6899999987544 3443 4455565
No 258
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=34.57 E-value=70 Score=26.35 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=27.4
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
++++++++++ +|.+...+++.|++.|-++|+.+
T Consensus 207 ~g~~vliVDDii~TG~T~~~a~~~l~~~Ga~~v~~~ 242 (309)
T PRK01259 207 EGRDCILVDDMIDTAGTLCKAAEALKERGAKSVYAY 242 (309)
T ss_pred CCCEEEEEecccCcHHHHHHHHHHHHccCCCEEEEE
Confidence 4678999876 78888899999999999887754
No 259
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=34.49 E-value=1.2e+02 Score=22.28 Aligned_cols=45 Identities=13% Similarity=0.338 Sum_probs=31.2
Q ss_pred HHHhcCCCCCeEEEEcCCCh--hHHHHHHHHHH---cCCceEEEeccccccc
Q 030411 129 SVKSQFSPESKLLVVCQEGL--RSAAAANKLEE---AGFQNIACITSGLQTV 175 (178)
Q Consensus 129 ~~~~~~~~~~~iviyC~~g~--rs~~aa~~L~~---~G~~~v~~l~GG~~~w 175 (178)
..+..++ +.-+|+.|..|. .|...|..|.+ .| .++..+-||-.++
T Consensus 58 ~il~~~~-~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g-~~i~FvIGGa~G~ 107 (153)
T TIGR00246 58 RILAAIG-KAHVVTLDIPGKPWTTPQLADTLEKWKTDG-RDVTLLIGGPEGL 107 (153)
T ss_pred HHHHhCC-CCeEEEEcCCCCcCCHHHHHHHHHHHhccC-CeEEEEEcCCCcC
Confidence 3445565 456777777765 57788888874 46 5788888987655
No 260
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.31 E-value=91 Score=26.86 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=27.4
Q ss_pred eEEEEcC---CC-------hhHHHHHHHHHHcCCceEEEecccccccc
Q 030411 139 KLLVVCQ---EG-------LRSAAAANKLEEAGFQNIACITSGLQTVK 176 (178)
Q Consensus 139 ~iviyC~---~g-------~rs~~aa~~L~~~G~~~v~~l~GG~~~w~ 176 (178)
++.+||. ++ .-.......|++.|++ +.+|-||+.+|-
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~aGh~-~ivLigd~ta~I 78 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGHK-PIVLIGDATAMI 78 (401)
T ss_pred CceEEEeeCCCCCccchhhHHHHHHHHHHHHCCCe-EEEEecccceec
Confidence 7889986 33 1234556678889996 889999999884
No 261
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=34.20 E-value=52 Score=21.08 Aligned_cols=25 Identities=40% Similarity=0.607 Sum_probs=15.3
Q ss_pred eEEEEcCCChhH-HHHHH----HHHHcCCc
Q 030411 139 KLLVVCQEGLRS-AAAAN----KLEEAGFQ 163 (178)
Q Consensus 139 ~iviyC~~g~rs-~~aa~----~L~~~G~~ 163 (178)
+++++|++|.-+ ..... .+.+.|+.
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~~~i~ 30 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKELGIE 30 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHCCCc
Confidence 489999988743 33433 34455653
No 262
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=34.02 E-value=88 Score=28.79 Aligned_cols=36 Identities=19% Similarity=0.163 Sum_probs=30.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEecccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGL 172 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 172 (178)
...+++|+|++...+...+..|.+.|++ +..|.|..
T Consensus 472 ~~~pvLIft~t~~~se~L~~~L~~~gi~-~~~Lhg~~ 507 (656)
T PRK12898 472 QGRPVLVGTRSVAASERLSALLREAGLP-HQVLNAKQ 507 (656)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCC-EEEeeCCc
Confidence 3578999999989999999999999996 66777653
No 263
>PTZ00424 helicase 45; Provisional
Probab=33.99 E-value=79 Score=26.39 Aligned_cols=36 Identities=14% Similarity=0.471 Sum_probs=29.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 137 ESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 137 ~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
..++++||++-..+...+..|...|+. +..+.|++.
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~~~~-~~~~h~~~~ 302 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHERDFT-VSCMHGDMD 302 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHCCCc-EEEEeCCCC
Confidence 457899999888888899999999985 888888864
No 264
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=33.91 E-value=3.2e+02 Score=25.44 Aligned_cols=90 Identities=12% Similarity=0.213 Sum_probs=53.6
Q ss_pred eCHHHHHHHhhc----CCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHH
Q 030411 51 VNAEEAKNLIAV----ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (178)
Q Consensus 51 Is~~e~~~~l~~----~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (178)
++.+++.++++. +=-.||.|++.+|.+..---|+--|-... . +......+.+.
T Consensus 144 L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINn--R---------------------dL~tf~vd~~~ 200 (695)
T PRK13802 144 LDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINA--R---------------------NLKDLKVDVNK 200 (695)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeC--C---------------------CCccceeCHHH
Confidence 555666666642 33479999999998764333433222210 0 00111112333
Q ss_pred HHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceE
Q 030411 127 VQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNI 165 (178)
Q Consensus 127 ~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v 165 (178)
...+...+++ .+++++.+|..+..-...|.+.|++-+
T Consensus 201 t~~L~~~ip~--~~~~VsESGI~~~~d~~~l~~~G~dav 237 (695)
T PRK13802 201 YNELAADLPD--DVIKVAESGVFGAVEVEDYARAGADAV 237 (695)
T ss_pred HHHHHhhCCC--CcEEEEcCCCCCHHHHHHHHHCCCCEE
Confidence 4444555653 478889999999999999999999744
No 265
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=33.27 E-value=95 Score=29.10 Aligned_cols=38 Identities=11% Similarity=0.046 Sum_probs=31.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 135 SPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 135 ~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
.+..+++|+|++-..+...+..|.+.|+. +.+|.|...
T Consensus 422 ~~~~pvLIft~s~~~se~ls~~L~~~gi~-~~~L~a~~~ 459 (762)
T TIGR03714 422 ETGQPVLLITGSVEMSEIYSELLLREGIP-HNLLNAQNA 459 (762)
T ss_pred hCCCCEEEEECcHHHHHHHHHHHHHCCCC-EEEecCCCh
Confidence 56789999999988899999999999996 667776554
No 266
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=33.14 E-value=1.2e+02 Score=21.43 Aligned_cols=45 Identities=22% Similarity=0.435 Sum_probs=28.2
Q ss_pred hHHHHHHHhc--CCCCCeEEEEcCCChhHH--HHHHHHHHcCCceEEEec
Q 030411 124 PEFVQSVKSQ--FSPESKLLVVCQEGLRSA--AAANKLEEAGFQNIACIT 169 (178)
Q Consensus 124 ~~~~~~~~~~--~~~~~~iviyC~~g~rs~--~aa~~L~~~G~~~v~~l~ 169 (178)
+.|.+..... +.+++-+|++..+|.... .++...++.|.+ +..+.
T Consensus 89 ~~~~~~~~~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~-vIalT 137 (138)
T PF13580_consen 89 EGFARQLLALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMK-VIALT 137 (138)
T ss_dssp GTHHHHHHHHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-E-EEEEE
T ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE-EEEEe
Confidence 4566666655 677888899999887644 677788889986 54443
No 267
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=33.03 E-value=86 Score=29.53 Aligned_cols=38 Identities=21% Similarity=0.161 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 135 SPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 135 ~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
.++.+|+|.|.+-..|...+..|.+.|+. ..+|.+...
T Consensus 438 ~~g~pvLI~t~si~~se~ls~~L~~~gi~-~~~Lna~~~ 475 (796)
T PRK12906 438 AKGQPVLVGTVAIESSERLSHLLDEAGIP-HAVLNAKNH 475 (796)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHCCCC-eeEecCCcH
Confidence 57899999999989999999999999996 667766543
No 268
>PLN02645 phosphoglycolate phosphatase
Probab=32.47 E-value=2e+02 Score=23.42 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=19.1
Q ss_pred CceeeCHHHHHHHhhcCCeEEEeeCC
Q 030411 47 DVNYVNAEEAKNLIAVERYAVLDVRD 72 (178)
Q Consensus 47 ~~~~Is~~e~~~~l~~~~~~lIDvR~ 72 (178)
..+..+.+++.+++.+-+.+++|+=.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~D~DG 37 (311)
T PLN02645 12 AAQLLTLENADELIDSVETFIFDCDG 37 (311)
T ss_pred ccccCCHHHHHHHHHhCCEEEEeCcC
Confidence 34556777888888766888999743
No 269
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=32.04 E-value=66 Score=29.15 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
.+..-||||.+-......+.+|...|+. +..|-||+.
T Consensus 229 ~~~~GIIYc~sRk~~E~ia~~L~~~g~~-a~~YHaGl~ 265 (590)
T COG0514 229 LSKSGIIYCLTRKKVEELAEWLRKNGIS-AGAYHAGLS 265 (590)
T ss_pred cCCCeEEEEeeHHhHHHHHHHHHHCCCc-eEEecCCCC
Confidence 4556899999988889999999999986 777888875
No 270
>PF06901 FrpC: RTX iron-regulated protein FrpC; InterPro: IPR010692 This family consists of several RTX iron-regulated FrpC proteins which appear to be found exclusively in Neisseria meningitidis. FrpC has been shown to be related to the RTX family of bacterial cytotoxins. FrpC is found in the meningococcal outer membrane. The function of this family is unknown although it is thought to be a virulence factor [].
Probab=32.04 E-value=69 Score=24.87 Aligned_cols=59 Identities=15% Similarity=0.291 Sum_probs=43.9
Q ss_pred CCCCCC-hHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEecccccccc
Q 030411 118 PFTKQN-PEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVK 176 (178)
Q Consensus 118 ~~~~~~-~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~ 176 (178)
|+-..| ..|++.+.+.++--..|+|--++|.-+..+...|.++|++++..+---+.+|.
T Consensus 120 PyNqqNK~~Fiq~LrD~L~~vD~I~IrKdaC~L~~~~~k~l~~yG~Kki~S~~~eYeAYE 179 (271)
T PF06901_consen 120 PYNQQNKAHFIQFLRDGLDSVDDIVIRKDACLLDPKVGKMLLRYGSKKIPSYYPEYEAYE 179 (271)
T ss_pred cccchhHHHHHHHHHcCCcccceEEEeccceecChhHHHHHHHhccccCcccCchhhhhh
Confidence 344445 66888877888877788888778888888999999999988775554555553
No 271
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=31.88 E-value=1.5e+02 Score=25.75 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=22.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCc--eEEEec
Q 030411 137 ESKLLVVCQEGLRSAAAANKLEEAGFQ--NIACIT 169 (178)
Q Consensus 137 ~~~iviyC~~g~rs~~aa~~L~~~G~~--~v~~l~ 169 (178)
+.+||++. .|.-..-.+..|...|++ |++.++
T Consensus 199 d~kiv~~G-AGAAgiaia~~l~~~g~~~~~i~~~D 232 (432)
T COG0281 199 DQKIVING-AGAAGIAIADLLVAAGVKEENIFVVD 232 (432)
T ss_pred ceEEEEeC-CcHHHHHHHHHHHHhCCCcccEEEEe
Confidence 34444443 356667788899999997 888776
No 272
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=31.77 E-value=84 Score=29.36 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=31.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccc
Q 030411 134 FSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSG 171 (178)
Q Consensus 134 ~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG 171 (178)
..++++++|.|++-..|...+..|.+.|+. ...|.+.
T Consensus 402 ~~~grpvLV~t~si~~se~ls~~L~~~gi~-~~~Lna~ 438 (745)
T TIGR00963 402 HAKGQPVLVGTTSVEKSELLSNLLKERGIP-HNVLNAK 438 (745)
T ss_pred HhcCCCEEEEeCcHHHHHHHHHHHHHcCCC-eEEeeCC
Confidence 367899999999988999999999999996 4566554
No 273
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=31.51 E-value=1.1e+02 Score=19.64 Aligned_cols=16 Identities=25% Similarity=0.671 Sum_probs=11.7
Q ss_pred CCCeEEEEcCCCh-hHH
Q 030411 136 PESKLLVVCQEGL-RSA 151 (178)
Q Consensus 136 ~~~~iviyC~~g~-rs~ 151 (178)
.+.+|+|+|..|. |+.
T Consensus 38 ~~~pvlVHC~~G~gRtg 54 (105)
T smart00012 38 SSGPVVVHCSAGVGRTG 54 (105)
T ss_pred CCCCEEEEeCCCCChhh
Confidence 3679999999654 554
No 274
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=31.51 E-value=1.1e+02 Score=19.64 Aligned_cols=16 Identities=25% Similarity=0.671 Sum_probs=11.7
Q ss_pred CCCeEEEEcCCCh-hHH
Q 030411 136 PESKLLVVCQEGL-RSA 151 (178)
Q Consensus 136 ~~~~iviyC~~g~-rs~ 151 (178)
.+.+|+|+|..|. |+.
T Consensus 38 ~~~pvlVHC~~G~gRtg 54 (105)
T smart00404 38 SSGPVVVHCSAGVGRTG 54 (105)
T ss_pred CCCCEEEEeCCCCChhh
Confidence 3679999999654 554
No 275
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=31.38 E-value=84 Score=27.66 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=27.9
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
++++||++++ +|.+...++..|++.|-+.|++.
T Consensus 359 ~gk~vvlvDD~i~tG~Tl~~~~~~l~~~Ga~~v~~~ 394 (479)
T PRK09123 359 EGKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLR 394 (479)
T ss_pred CCCEEEEEeceeCchHHHHHHHHHHHHcCCCEEEEE
Confidence 4678999987 68899999999999999877753
No 276
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=31.03 E-value=1.7e+02 Score=20.21 Aligned_cols=43 Identities=14% Similarity=0.256 Sum_probs=23.4
Q ss_pred HHHHHhcCCCCCeEEEEcCC-ChhHHHHHHHHHHcCCceEEEecc
Q 030411 127 VQSVKSQFSPESKLLVVCQE-GLRSAAAANKLEEAGFQNIACITS 170 (178)
Q Consensus 127 ~~~~~~~~~~~~~iviyC~~-g~rs~~aa~~L~~~G~~~v~~l~G 170 (178)
+......++.++.+++.|+= |..-..++..+.... .+++++.|
T Consensus 47 i~~~i~~~~~~~~viil~Dl~GGSp~n~~~~~~~~~-~~~~visG 90 (122)
T cd00006 47 IKAALAELDSGEGVLILTDLFGGSPNNAAARLSMEH-PPVEVIAG 90 (122)
T ss_pred HHHHHHHhCCCCcEEEEEeCCCCCHHHHHHHHHhcC-CCEEEEEc
Confidence 34444555666778888873 333344444444332 45766654
No 277
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=30.83 E-value=1.4e+02 Score=25.87 Aligned_cols=38 Identities=13% Similarity=0.309 Sum_probs=27.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHc--CC----ce--EEEecccccc
Q 030411 137 ESKLLVVCQEGLRSAAAANKLEEA--GF----QN--IACITSGLQT 174 (178)
Q Consensus 137 ~~~iviyC~~g~rs~~aa~~L~~~--G~----~~--v~~l~GG~~~ 174 (178)
...-|++|++|..+..+|-.+.+. +. ++ +..++|||++
T Consensus 115 ~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG 160 (433)
T KOG1401|consen 115 SAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHG 160 (433)
T ss_pred CccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCC
Confidence 445799999999988877766553 22 23 6677888875
No 278
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=30.62 E-value=1.1e+02 Score=23.86 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=25.9
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHc-CCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEA-GFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~-G~~~v~~l 168 (178)
.++.+|+.+. +|.....+.+.|++. |.+|+.++
T Consensus 123 ~~~~viv~DPMLATG~s~i~ai~~L~~~G~~~~I~~v 159 (210)
T COG0035 123 DERTVIVLDPMLATGGSAIAAIDLLKKRGGPKNIKVV 159 (210)
T ss_pred cCCeEEEECchhhccHhHHHHHHHHHHhCCCceEEEE
Confidence 3566777776 788999999999999 77776644
No 279
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=30.38 E-value=64 Score=22.20 Aligned_cols=22 Identities=27% Similarity=0.682 Sum_probs=15.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHH
Q 030411 138 SKLLVVCQEGLRSAAAANKLEE 159 (178)
Q Consensus 138 ~~iviyC~~g~rs~~aa~~L~~ 159 (178)
++|.++|+.|..+...+..+++
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~ 23 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKK 23 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHH
Confidence 4799999999876665555444
No 280
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=30.27 E-value=1.5e+02 Score=24.90 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=29.1
Q ss_pred eEEEEcCCChhHHHHHHHHHHc--CCceEEEecccccccc
Q 030411 139 KLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVK 176 (178)
Q Consensus 139 ~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~ 176 (178)
+-+++|++|..+..+|-.+.+. |-++|...+++|.++.
T Consensus 82 ~~v~~~~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t 121 (364)
T PRK04013 82 EYVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRT 121 (364)
T ss_pred CEEEEeCchHHHHHHHHHHHHHHhCCCEEEEECCccccCc
Confidence 4688899999988888776664 5456878888888864
No 281
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=30.24 E-value=1.2e+02 Score=23.44 Aligned_cols=30 Identities=33% Similarity=0.493 Sum_probs=25.8
Q ss_pred CCCCCeEEEEcC---CChhHHHHHHHHHHcCCc
Q 030411 134 FSPESKLLVVCQ---EGLRSAAAANKLEEAGFQ 163 (178)
Q Consensus 134 ~~~~~~iviyC~---~g~rs~~aa~~L~~~G~~ 163 (178)
+.++++|+|+++ +|.....++..|++.|..
T Consensus 115 ~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~ 147 (206)
T PRK13809 115 FTPGQTCLVINDMVSSGKSIIETAVALEEEGLV 147 (206)
T ss_pred cCCCCEEEEEEeccccCHHHHHHHHHHHHCCCE
Confidence 357789999998 788889999999999975
No 282
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=30.21 E-value=83 Score=28.68 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=30.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 137 ESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 137 ~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
...+||||++-..+..++..|...||. +..+.|.+.
T Consensus 245 ~~~~IVF~~tk~~a~~l~~~L~~~g~~-~~~lhgd~~ 280 (629)
T PRK11634 245 FDAAIIFVRTKNATLEVAEALERNGYN-SAALNGDMN 280 (629)
T ss_pred CCCEEEEeccHHHHHHHHHHHHhCCCC-EEEeeCCCC
Confidence 356899999988888999999999996 778887653
No 283
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=30.14 E-value=1.2e+02 Score=23.19 Aligned_cols=32 Identities=28% Similarity=0.371 Sum_probs=24.9
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCC--ceEEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGF--QNIAC 167 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~--~~v~~ 167 (178)
.+++|++.+. +|.....+.+.|++.|. +++.+
T Consensus 120 ~~~~VillDpmlaTG~s~~~ai~~L~~~G~~~~~I~~ 156 (207)
T PF14681_consen 120 ENRKVILLDPMLATGGSAIAAIEILKEHGVPEENIII 156 (207)
T ss_dssp TTSEEEEEESEESSSHHHHHHHHHHHHTTG-GGEEEE
T ss_pred cCCEEEEEeccccchhhHHHHHHHHHHcCCCcceEEE
Confidence 3567888754 89999999999999987 45554
No 284
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=29.53 E-value=1.1e+02 Score=23.36 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=26.0
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~ 166 (178)
++++|+|+++ +|.....+...|++.|-+.+.
T Consensus 139 ~gk~VlIVDDVitTG~Tl~~ai~~l~~~Ga~~v~ 172 (200)
T PRK02277 139 EGKRCVIVDDVITSGTTMKETIEYLKEHGGKPVA 172 (200)
T ss_pred CcCEEEEEeeccCchHHHHHHHHHHHHcCCEEEE
Confidence 6789999987 688888999999999976543
No 285
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=29.51 E-value=1.1e+02 Score=28.51 Aligned_cols=46 Identities=15% Similarity=0.210 Sum_probs=32.7
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCC----hhHHHHHHHHHHcCCceEEEecccc
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEG----LRSAAAANKLEEAGFQNIACITSGL 172 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g----~rs~~aa~~L~~~G~~~v~~l~GG~ 172 (178)
+++++... ..+..+|++|..- .....++..|++.|.+++.++-||.
T Consensus 623 e~~v~aa~---~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G~~~v~vl~GG~ 672 (714)
T PRK09426 623 EEAARQAV---ENDVHVVGVSSLAAGHKTLVPALIEALKKLGREDIMVVVGGV 672 (714)
T ss_pred HHHHHHHH---HcCCCEEEEeccchhhHHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence 45554443 3567799999842 2355788889999988898888876
No 286
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics]
Probab=29.29 E-value=2e+02 Score=24.72 Aligned_cols=64 Identities=22% Similarity=0.399 Sum_probs=36.5
Q ss_pred eEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHHHHHhcCCCCCeEEEEcCC----Chh----------
Q 030411 84 SYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQFSPESKLLVVCQE----GLR---------- 149 (178)
Q Consensus 84 Avnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iviyC~~----g~r---------- 149 (178)
|+|+|+.+=.++.....+.+. .+....+...++ -||+=|.. |.|
T Consensus 222 avNVPL~dGidD~sy~~if~p---------------------Ii~~v~e~f~P~-AiVLQCGaDSL~gDRlgcFnLsi~G 279 (425)
T KOG1342|consen 222 AVNVPLKDGIDDESYESIFKP---------------------IISKVMERFQPE-AIVLQCGADSLAGDRLGCFNLSIKG 279 (425)
T ss_pred EEccchhccCCcHHHHHHHHH---------------------HHHHHHHHhCCc-eEEEEcCCccccCCccceeeecchh
Confidence 899999865554444444443 333444444444 48888873 332
Q ss_pred HHHHHHHHHHcCCceEEEecc
Q 030411 150 SAAAANKLEEAGFQNIACITS 170 (178)
Q Consensus 150 s~~aa~~L~~~G~~~v~~l~G 170 (178)
-.......++.+.. ..+|-|
T Consensus 280 h~~Cv~fvksfn~p-llvlGG 299 (425)
T KOG1342|consen 280 HAECVKFVKSFNLP-LLVLGG 299 (425)
T ss_pred HHHHHHHHHHcCCc-EEEecC
Confidence 33556667777764 555554
No 287
>PF10903 DUF2691: Protein of unknown function (DUF2691); InterPro: IPR020216 This entry represents a group of uncharacterised proteins.
Probab=29.28 E-value=2.4e+02 Score=20.91 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=26.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEec
Q 030411 137 ESKLLVVCQEGLRSAAAANKLEEAGFQNIACIT 169 (178)
Q Consensus 137 ~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~ 169 (178)
..-|-|||..-..-....+..+..||.|+..+.
T Consensus 110 ~~yv~IycKd~~~i~~lyqna~~~gy~~i~yIT 142 (153)
T PF10903_consen 110 SSYVSIYCKDQEIIESLYQNAQNQGYENIEYIT 142 (153)
T ss_pred ccEEEEEEcCHHHHHHHHHHHHHCCceEEEEEe
Confidence 455778888766667788889999999998775
No 288
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=29.08 E-value=72 Score=27.99 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=24.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEE
Q 030411 137 ESKLLVVCQEGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 137 ~~~iviyC~~g~rs~~aa~~L~~~G~~~v~ 166 (178)
..++++.+.+|..|..+++++.+.|++ |.
T Consensus 177 ~gk~lvllSGGiDS~va~~~~~krG~~-v~ 205 (482)
T PRK01269 177 QEDVLSLISGGFDSGVASYMLMRRGSR-VH 205 (482)
T ss_pred cCeEEEEEcCCchHHHHHHHHHHcCCE-EE
Confidence 457888889999999999999999985 54
No 289
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=28.87 E-value=87 Score=27.94 Aligned_cols=45 Identities=16% Similarity=0.347 Sum_probs=33.1
Q ss_pred HHHHHhcC--CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEecccc
Q 030411 127 VQSVKSQF--SPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGL 172 (178)
Q Consensus 127 ~~~~~~~~--~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 172 (178)
+...+..+ +++.++||+|.+-..+..++..|+..|+. +..+-|..
T Consensus 329 l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~-a~~iHGd~ 375 (519)
T KOG0331|consen 329 LGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWP-AVAIHGDK 375 (519)
T ss_pred HHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcc-eeeecccc
Confidence 33334443 35568999999988889999999999975 66666654
No 290
>PRK09694 helicase Cas3; Provisional
Probab=28.72 E-value=1.2e+02 Score=29.03 Aligned_cols=50 Identities=10% Similarity=0.156 Sum_probs=37.6
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCC--ceEEEeccccc
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGF--QNIACITSGLQ 173 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~--~~v~~l~GG~~ 173 (178)
...++.....+..+..++++|++-.++..++..|++.+. .++..+-+.+.
T Consensus 547 ~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~ 598 (878)
T PRK09694 547 LTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFT 598 (878)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCC
Confidence 455566666666788899999998899999999998752 24777777654
No 291
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=28.58 E-value=1.5e+02 Score=18.30 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=26.2
Q ss_pred HHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCc
Q 030411 130 VKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQ 163 (178)
Q Consensus 130 ~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~ 163 (178)
.+..+..+..+.+.++.......+..+.+..||+
T Consensus 19 al~~l~~G~~l~V~~d~~~a~~di~~~~~~~G~~ 52 (69)
T cd03420 19 EIDKLQDGEQLEVKASDPGFARDAQAWCKSTGNT 52 (69)
T ss_pred HHHcCCCCCEEEEEECCccHHHHHHHHHHHcCCE
Confidence 3555667777877777666667888999999997
No 292
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=28.24 E-value=92 Score=19.49 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=20.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHH
Q 030411 135 SPESKLLVVCQEGLRSAAAANKLEE 159 (178)
Q Consensus 135 ~~~~~iviyC~~g~rs~~aa~~L~~ 159 (178)
..+.+|++.|.+...+......|++
T Consensus 45 AgdDTilvi~~~~~~a~~l~~~l~~ 69 (70)
T PF02863_consen 45 AGDDTILVICRSEEDAEELEEKLKE 69 (70)
T ss_dssp EESSEEEEEESTTSHHHHHHHHHHT
T ss_pred eCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 4578899999999988888888765
No 293
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=28.06 E-value=1.2e+02 Score=23.79 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=26.5
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
+++.||++++ +|.+..-+.+.++..|-++|++.
T Consensus 123 ~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviA 158 (220)
T COG1926 123 KGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIA 158 (220)
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEE
Confidence 4677888887 47788888899999998887753
No 294
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=27.95 E-value=1.3e+02 Score=22.32 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=24.8
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcC-CceEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAG-FQNIA 166 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G-~~~v~ 166 (178)
.+++|+|+++ +|.+...++..|++.| -.++.
T Consensus 94 ~gr~VLIVDDIidTG~Tl~~~~~~L~~~G~~~~v~ 128 (176)
T PRK05205 94 EGKRVILVDDVLYTGRTIRAALDALFDYGRPARVQ 128 (176)
T ss_pred CCCEEEEEecccCcHHHHHHHHHHHHhcCCCcEEE
Confidence 5678999876 7889899999999998 44443
No 295
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=27.73 E-value=2.1e+02 Score=24.01 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=27.5
Q ss_pred EEEEcCCChhHHHHHHHHHH--------cCCceEEEecccccccc
Q 030411 140 LLVVCQEGLRSAAAANKLEE--------AGFQNIACITSGLQTVK 176 (178)
Q Consensus 140 iviyC~~g~rs~~aa~~L~~--------~G~~~v~~l~GG~~~w~ 176 (178)
-+++|++|..+..+|-.+.+ .|-++|..++++|++|-
T Consensus 94 ~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~ 138 (397)
T TIGR03246 94 KVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRT 138 (397)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCcc
Confidence 57888889888877766553 24456888899998874
No 296
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=27.39 E-value=1.2e+02 Score=22.96 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=25.9
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~ 166 (178)
++++|+++.+ +|.+-..+...|+..|.+.+.
T Consensus 96 ~gk~VliVDDIidTG~Tl~~~~~~l~~~g~~~v~ 129 (189)
T PLN02238 96 KGKHVLLVEDIVDTGNTLSALVAHLEAKGAASVS 129 (189)
T ss_pred CCCEEEEEecccchHHHHHHHHHHHHhCCCCEEE
Confidence 6788999987 788888899999999987654
No 297
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=27.16 E-value=1.5e+02 Score=24.08 Aligned_cols=14 Identities=0% Similarity=0.014 Sum_probs=9.9
Q ss_pred CCCCCeEEEEcCCC
Q 030411 134 FSPESKLLVVCQEG 147 (178)
Q Consensus 134 ~~~~~~iviyC~~g 147 (178)
++.+..|+.||+++
T Consensus 107 I~~g~~ILTh~~S~ 120 (275)
T PRK08335 107 IDDGDVIITHSFSS 120 (275)
T ss_pred cCCCCEEEEECCcH
Confidence 55666788888764
No 298
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=27.10 E-value=1.1e+02 Score=29.33 Aligned_cols=39 Identities=10% Similarity=0.000 Sum_probs=32.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 134 FSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 134 ~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
...+++|+|.|.+-..|...+..|...|+. ..+|.+...
T Consensus 446 ~~~GrpVLV~t~sv~~se~ls~~L~~~gi~-~~vLnak~~ 484 (908)
T PRK13107 446 RERGQPVLVGTVSIEQSELLARLMVKEKIP-HEVLNAKFH 484 (908)
T ss_pred HHcCCCEEEEeCcHHHHHHHHHHHHHCCCC-eEeccCccc
Confidence 367899999999989999999999999996 556766543
No 299
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=26.47 E-value=1e+02 Score=27.83 Aligned_cols=43 Identities=19% Similarity=0.320 Sum_probs=29.3
Q ss_pred hHHHHHHHhcCCCCCeEEEEcC---CChhHH-HHHHHHHHcCCceEE
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQ---EGLRSA-AAANKLEEAGFQNIA 166 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~---~g~rs~-~aa~~L~~~G~~~v~ 166 (178)
.+.++...+.+..+.+|+||.+ .|..|. .....|++.|..++.
T Consensus 56 ~~a~~ri~~ai~~~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~ 102 (575)
T PRK11070 56 EKAVELLYNALREGTRIIVVGDFDADGATSTALSVLALRSLGCSNVD 102 (575)
T ss_pred HHHHHHHHHHHHCCCEEEEEEecCccHHHHHHHHHHHHHHcCCCceE
Confidence 3455555666777889999966 366555 566779999985453
No 300
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=25.99 E-value=1.4e+02 Score=19.17 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=18.0
Q ss_pred CCeEEEEcCCC--hhHHHHHHHHHHcCCce
Q 030411 137 ESKLLVVCQEG--LRSAAAANKLEEAGFQN 164 (178)
Q Consensus 137 ~~~iviyC~~g--~rs~~aa~~L~~~G~~~ 164 (178)
+-+|-|+-.++ ..+..++..|+..||+.
T Consensus 3 ~v~V~VlNgt~~~GlA~~~a~~L~~~Gf~v 32 (90)
T PF13399_consen 3 DVRVEVLNGTGVSGLAARVADALRNRGFTV 32 (90)
T ss_pred ceEEEEEECcCCcCHHHHHHHHHHHCCCce
Confidence 34555554443 35677888888888864
No 301
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=25.93 E-value=1.3e+02 Score=20.70 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=20.8
Q ss_pred CCCeEEEEcCCC--hhHHHHHHHHHHcCCc
Q 030411 136 PESKLLVVCQEG--LRSAAAANKLEEAGFQ 163 (178)
Q Consensus 136 ~~~~iviyC~~g--~rs~~aa~~L~~~G~~ 163 (178)
++..+.|+|.+. ..+..++..|++.|++
T Consensus 8 ~g~di~iia~G~~~~~al~A~~~L~~~Gi~ 37 (124)
T PF02780_consen 8 EGADITIIAYGSMVEEALEAAEELEEEGIK 37 (124)
T ss_dssp SSSSEEEEEETTHHHHHHHHHHHHHHTTCE
T ss_pred CCCCEEEEeehHHHHHHHHHHHHHHHcCCc
Confidence 566677777653 4577899999999985
No 302
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=25.78 E-value=1.2e+02 Score=22.14 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=23.8
Q ss_pred CCCCCeEEEEcCC---ChhHHHHHHHHHHcCCceEE
Q 030411 134 FSPESKLLVVCQE---GLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 134 ~~~~~~iviyC~~---g~rs~~aa~~L~~~G~~~v~ 166 (178)
+...++|.++..| ...|..++..|.+.||+ |.
T Consensus 13 L~~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~-Vi 47 (140)
T COG1832 13 LKSAKTIAVVGASDKPDRPSYRVAKYLQQKGYR-VI 47 (140)
T ss_pred HHhCceEEEEecCCCCCccHHHHHHHHHHCCCE-EE
Confidence 3456777777654 34588999999999997 54
No 303
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=25.57 E-value=1.4e+02 Score=25.22 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=28.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEecccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGL 172 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 172 (178)
.+++|+|+ ..|..+..++..|...|+.++.++++..
T Consensus 134 ~~~~Vlvv-G~GG~Gs~ia~~La~~Gvg~i~lvD~d~ 169 (376)
T PRK08762 134 LEARVLLI-GAGGLGSPAALYLAAAGVGTLGIVDHDV 169 (376)
T ss_pred hcCcEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 45566666 4467788899999999999999998874
No 304
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=25.54 E-value=1.6e+02 Score=22.24 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=35.8
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEecccc
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGL 172 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 172 (178)
..++......+.++..+++.+..-.........+...|+. +.+.+||+
T Consensus 136 ~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~ 183 (202)
T PRK00121 136 PEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGF-LVSEAGDY 183 (202)
T ss_pred HHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccc-ccccchhh
Confidence 5677777777888888888887766667788888888974 55555544
No 305
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=25.35 E-value=1.1e+02 Score=19.18 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=16.0
Q ss_pred eEEEEcCCChhHH-HHHHHHHHc
Q 030411 139 KLLVVCQEGLRSA-AAANKLEEA 160 (178)
Q Consensus 139 ~iviyC~~g~rs~-~aa~~L~~~ 160 (178)
+++++|++|..+. ..+..|++.
T Consensus 2 kilivC~~G~~~s~~l~~~l~~~ 24 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKKL 24 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHHH
Confidence 5899999987655 566666664
No 306
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=25.26 E-value=2.3e+02 Score=23.94 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=27.9
Q ss_pred eEEEEcCCChhHHHHHHHHHHc--------CCceEEEecccccccc
Q 030411 139 KLLVVCQEGLRSAAAANKLEEA--------GFQNIACITSGLQTVK 176 (178)
Q Consensus 139 ~iviyC~~g~rs~~aa~~L~~~--------G~~~v~~l~GG~~~w~ 176 (178)
.-+++|++|..+..++-.+.+. |-+.|..++++|++|.
T Consensus 97 ~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t 142 (406)
T PRK12381 97 DRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRT 142 (406)
T ss_pred CeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcc
Confidence 3678899999888777766432 3345778899998874
No 307
>PRK10853 putative reductase; Provisional
Probab=25.23 E-value=1.4e+02 Score=20.77 Aligned_cols=24 Identities=17% Similarity=0.057 Sum_probs=17.1
Q ss_pred EEEEcC-CChhHHHHHHHHHHcCCc
Q 030411 140 LLVVCQ-EGLRSAAAANKLEEAGFQ 163 (178)
Q Consensus 140 iviyC~-~g~rs~~aa~~L~~~G~~ 163 (178)
|.||+. +|..+..|..+|...|++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~ 26 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGID 26 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCC
Confidence 456666 577777788888887764
No 308
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=25.22 E-value=4.3e+02 Score=23.67 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=29.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
++.+||++|.+++.-...+..|..+-.. |..+-|+..
T Consensus 329 ~~~KiiVF~sT~~~vk~~~~lL~~~dlp-v~eiHgk~~ 365 (543)
T KOG0342|consen 329 KRYKIIVFFSTCMSVKFHAELLNYIDLP-VLEIHGKQK 365 (543)
T ss_pred CCceEEEEechhhHHHHHHHHHhhcCCc-hhhhhcCCc
Confidence 3489999999999888999999977663 666777664
No 309
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=25.13 E-value=1.7e+02 Score=17.80 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=27.5
Q ss_pred HHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCc
Q 030411 128 QSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQ 163 (178)
Q Consensus 128 ~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~ 163 (178)
...+..++.+..+.+..+..........++...||+
T Consensus 18 ~~~l~~l~~G~~l~v~~d~~~~~~di~~~~~~~g~~ 53 (70)
T PF01206_consen 18 KKALKELPPGEVLEVLVDDPAAVEDIPRWCEENGYE 53 (70)
T ss_dssp HHHHHTSGTT-EEEEEESSTTHHHHHHHHHHHHTEE
T ss_pred HHHHHhcCCCCEEEEEECCccHHHHHHHHHHHCCCE
Confidence 344566778888888887766668899999999996
No 310
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.11 E-value=55 Score=25.08 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=22.2
Q ss_pred eeeCHHHHHHHhhcCCeEEEeeCChhhh
Q 030411 49 NYVNAEEAKNLIAVERYAVLDVRDNSQY 76 (178)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDvR~~~e~ 76 (178)
..|+.+|..+.+. ++.-||||.+|.|=
T Consensus 6 SPin~eEA~eAie-GGAdIiDVKNP~EG 32 (235)
T COG1891 6 SPINREEAIEAIE-GGADIIDVKNPAEG 32 (235)
T ss_pred ccCCHHHHHHHhh-CCCceEeccCcccC
Confidence 4588899888887 67889999999863
No 311
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=25.05 E-value=1.2e+02 Score=23.93 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=29.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHc------CCceEE--Eecccccccc
Q 030411 134 FSPESKLLVVCQEGLRSAAAANKLEEA------GFQNIA--CITSGLQTVK 176 (178)
Q Consensus 134 ~~~~~~iviyC~~g~rs~~aa~~L~~~------G~~~v~--~l~GG~~~w~ 176 (178)
+.++.+|++-+.+|..|...+..|... +|+ +. .++-|+..|.
T Consensus 26 i~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~-l~av~vd~g~~~~~ 75 (258)
T PRK10696 26 IEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFE-LVAVNLDQKQPGFP 75 (258)
T ss_pred CCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeE-EEEEEecCCCCCCC
Confidence 567789999999999999888777553 332 33 5566666653
No 312
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=25.03 E-value=1.2e+02 Score=25.77 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=27.2
Q ss_pred EEEEcCCChhHHHHHHHHHHc-------CCceEEEecccccccc
Q 030411 140 LLVVCQEGLRSAAAANKLEEA-------GFQNIACITSGLQTVK 176 (178)
Q Consensus 140 iviyC~~g~rs~~aa~~L~~~-------G~~~v~~l~GG~~~w~ 176 (178)
-+++|++|..+..+|-.+.+. |-++|..++++|++|.
T Consensus 95 ~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t 138 (395)
T PRK03715 95 KVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRT 138 (395)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCCh
Confidence 578899999888777666542 4456778899888763
No 313
>PTZ00346 histone deacetylase; Provisional
Probab=24.94 E-value=3.1e+02 Score=23.96 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=17.3
Q ss_pred HHHHHHHHcCCceEEEecccccc
Q 030411 152 AAANKLEEAGFQNIACITSGLQT 174 (178)
Q Consensus 152 ~aa~~L~~~G~~~v~~l~GG~~~ 174 (178)
.+.+.+++.+..=+.++.|||.-
T Consensus 298 ~~~~~l~~~~~plv~vleGGY~~ 320 (429)
T PTZ00346 298 QCVQAVRDLGIPMLALGGGGYTI 320 (429)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCc
Confidence 45667777787767788999974
No 314
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=24.93 E-value=1.7e+02 Score=18.31 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=20.6
Q ss_pred CCCeEEEEcC-CChhHHHHHHHHHHcCCc
Q 030411 136 PESKLLVVCQ-EGLRSAAAANKLEEAGFQ 163 (178)
Q Consensus 136 ~~~~iviyC~-~g~rs~~aa~~L~~~G~~ 163 (178)
...+|++|.. ++..+..+-..|.+.|++
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~ 34 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYD 34 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCC
Confidence 4556888876 467777888888888875
No 315
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=24.63 E-value=1.8e+02 Score=18.77 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=20.9
Q ss_pred CCCeEEEEcC------CChhHHHHHHHHHHcCCc
Q 030411 136 PESKLLVVCQ------EGLRSAAAANKLEEAGFQ 163 (178)
Q Consensus 136 ~~~~iviyC~------~g~rs~~aa~~L~~~G~~ 163 (178)
.+.+||+|.. .+..+..+-..|...|.+
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~ 39 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVD 39 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 3557888854 567788888889888864
No 316
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=24.56 E-value=94 Score=23.47 Aligned_cols=31 Identities=13% Similarity=0.238 Sum_probs=23.9
Q ss_pred EEEcCCChhHHHHHHHHHHcCCceEEEeccc
Q 030411 141 LVVCQEGLRSAAAANKLEEAGFQNIACITSG 171 (178)
Q Consensus 141 viyC~~g~rs~~aa~~L~~~G~~~v~~l~GG 171 (178)
|+.|.....-..+...++..||.++-++++|
T Consensus 75 vv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~ 105 (187)
T COG3620 75 VVSVSPDDSISDVVNLMRDKGISQLPVIEED 105 (187)
T ss_pred eeEECchhhHHHHHHHHHHcCCccCceeeCC
Confidence 4556665666789999999999988887764
No 317
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=24.17 E-value=1.2e+02 Score=20.88 Aligned_cols=29 Identities=17% Similarity=0.298 Sum_probs=21.4
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEe
Q 030411 140 LLVVCQEGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 140 iviyC~~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
-|++.++|.-+.++.+.++++|++-|.+.
T Consensus 4 kvLIanrGeia~r~~ra~r~~Gi~tv~v~ 32 (110)
T PF00289_consen 4 KVLIANRGEIAVRIIRALRELGIETVAVN 32 (110)
T ss_dssp EEEESS-HHHHHHHHHHHHHTTSEEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHhCCcceecc
Confidence 35666778889999999999999754443
No 318
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=23.94 E-value=1.9e+02 Score=21.40 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=25.2
Q ss_pred CCCCCeEEEEcC---CChhHHHHHHHHHHcCCc
Q 030411 134 FSPESKLLVVCQ---EGLRSAAAANKLEEAGFQ 163 (178)
Q Consensus 134 ~~~~~~iviyC~---~g~rs~~aa~~L~~~G~~ 163 (178)
+.++++|+|+++ +|..-..+...|++.|.+
T Consensus 105 ~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~ 137 (173)
T TIGR00336 105 LLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQ 137 (173)
T ss_pred CCCCCEEEEEeccccChHHHHHHHHHHHHcCCe
Confidence 457889999987 688888899999999974
No 319
>PRK00919 GMP synthase subunit B; Validated
Probab=23.92 E-value=2.3e+02 Score=23.43 Aligned_cols=44 Identities=18% Similarity=0.394 Sum_probs=30.0
Q ss_pred HHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHH-cCCceEE--Eecccc
Q 030411 127 VQSVKSQFSPESKLLVVCQEGLRSAAAANKLEE-AGFQNIA--CITSGL 172 (178)
Q Consensus 127 ~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~-~G~~~v~--~l~GG~ 172 (178)
++...+.+.. .++++-..+|..|..++..+.+ .|++ +. .++.|+
T Consensus 12 ~~~l~~~~~~-~kVlVa~SGGVDSsvla~la~~~lG~~-v~aV~vD~G~ 58 (307)
T PRK00919 12 IEEIREEIGD-GKAIIALSGGVDSSVAAVLAHRAIGDR-LTPVFVDTGL 58 (307)
T ss_pred HHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHHhCCe-EEEEEEECCC
Confidence 3334444544 6788888899999999998877 5864 44 445555
No 320
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=23.87 E-value=1.9e+02 Score=19.11 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=21.1
Q ss_pred CCCeEEEEcC------CChhHHHHHHHHHHcCCc
Q 030411 136 PESKLLVVCQ------EGLRSAAAANKLEEAGFQ 163 (178)
Q Consensus 136 ~~~~iviyC~------~g~rs~~aa~~L~~~G~~ 163 (178)
.+.+||+|.. .|-.+..+-..|...|++
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~ 43 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVP 43 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCC
Confidence 4567888854 467778888888888874
No 321
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=23.82 E-value=2.9e+02 Score=23.12 Aligned_cols=37 Identities=11% Similarity=0.142 Sum_probs=26.4
Q ss_pred EEEEcCCChhHHHHHHHHHH----------cCCceEEEecccccccc
Q 030411 140 LLVVCQEGLRSAAAANKLEE----------AGFQNIACITSGLQTVK 176 (178)
Q Consensus 140 iviyC~~g~rs~~aa~~L~~----------~G~~~v~~l~GG~~~w~ 176 (178)
-+++|++|..+..+|-.+.+ .|-++|...+|+|.+|-
T Consensus 99 ~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~ 145 (396)
T PRK04073 99 MVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRT 145 (396)
T ss_pred eEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCC
Confidence 56778889988877666543 24345778889888864
No 322
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=23.77 E-value=1.9e+02 Score=21.93 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=26.4
Q ss_pred cCCCCCeEEEEcC---CChhHHHHHHHHHHcCCc
Q 030411 133 QFSPESKLLVVCQ---EGLRSAAAANKLEEAGFQ 163 (178)
Q Consensus 133 ~~~~~~~iviyC~---~g~rs~~aa~~L~~~G~~ 163 (178)
.++++++|+|+++ +|.....+.+.+++.|.+
T Consensus 113 ~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~ 146 (189)
T PRK09219 113 FLSEGDRVLIIDDFLANGQAALGLIDIIEQAGAK 146 (189)
T ss_pred hCCCCCEEEEEeehhhcChHHHHHHHHHHHCCCE
Confidence 3568999999998 688888899999999975
No 323
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=23.77 E-value=1.9e+02 Score=21.63 Aligned_cols=30 Identities=23% Similarity=0.364 Sum_probs=25.8
Q ss_pred CCCCCeEEEEcC---CChhHHHHHHHHHHcCCc
Q 030411 134 FSPESKLLVVCQ---EGLRSAAAANKLEEAGFQ 163 (178)
Q Consensus 134 ~~~~~~iviyC~---~g~rs~~aa~~L~~~G~~ 163 (178)
+.++++|+|+++ +|.+...+...|++.|.+
T Consensus 104 ~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~ 136 (176)
T PRK13812 104 LDEGEEVVVLEDIATTGQSAVDAVEALREAGAT 136 (176)
T ss_pred CCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCe
Confidence 457889999987 788888999999999975
No 324
>KOG4053 consensus Ataxin-1, involved in Ca2+ homeostasis [Function unknown]
Probab=23.67 E-value=1.2e+02 Score=23.48 Aligned_cols=46 Identities=9% Similarity=0.016 Sum_probs=36.5
Q ss_pred cCceeeCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccc
Q 030411 46 ADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFI 91 (178)
Q Consensus 46 ~~~~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~ 91 (178)
.++..++.+++.+--..++.+.||.-.-......|.||.+-|-+..
T Consensus 50 kkVEDl~TeDFirsA~~S~~lkidsstVvrI~~S~~pg~vti~F~~ 95 (224)
T KOG4053|consen 50 KKVEDLSTEDFIRSAEESDDLKIDSSTVVRIKSSGCPGSVTIIFEV 95 (224)
T ss_pred eehhhcchHHHHHHHHhcCCeEeecceEEEeeccCCCceEEEEEEe
Confidence 3678899999987766667788888777777778999999887764
No 325
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=23.62 E-value=1.6e+02 Score=22.93 Aligned_cols=33 Identities=30% Similarity=0.361 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCc--eEEEec
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQ--NIACIT 169 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~--~v~~l~ 169 (178)
++++++|+.. |..+.-++..|...|.+ ++++++
T Consensus 24 ~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivd 58 (226)
T cd05311 24 EEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVD 58 (226)
T ss_pred cCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEe
Confidence 4566666654 67778888888999998 898775
No 326
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=23.54 E-value=1.9e+02 Score=21.89 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=26.2
Q ss_pred cCCCCCeEEEEcC---CChhHHHHHHHHHHcCCc
Q 030411 133 QFSPESKLLVVCQ---EGLRSAAAANKLEEAGFQ 163 (178)
Q Consensus 133 ~~~~~~~iviyC~---~g~rs~~aa~~L~~~G~~ 163 (178)
.+.++++|+++++ +|.....+...+++.|.+
T Consensus 118 ~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~ 151 (187)
T PRK13810 118 DLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAY 151 (187)
T ss_pred cCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCE
Confidence 3568899999998 688888899999999974
No 327
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=23.49 E-value=1.2e+02 Score=25.07 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=20.5
Q ss_pred EEEEcCCChhHHHHHHHH-HHcCCceEEEecccccccc
Q 030411 140 LLVVCQEGLRSAAAANKL-EEAGFQNIACITSGLQTVK 176 (178)
Q Consensus 140 iviyC~~g~rs~~aa~~L-~~~G~~~v~~l~GG~~~w~ 176 (178)
.|++|.. |.. ++..+ +..+. +|.++|+|+|-|+
T Consensus 102 ~V~V~~d--R~~-a~~~~~~~~~~-dviilDDGfQh~~ 135 (311)
T TIGR00682 102 TVVASKD--RKD-AILLILEQLDP-DVIILDDGLQHRK 135 (311)
T ss_pred cEEEeCh--HHH-HHHHHHhcCCC-CEEEECCCCcCcc
Confidence 3556654 433 33344 44466 5999999999774
No 328
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=23.44 E-value=96 Score=22.98 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=18.6
Q ss_pred hHHHHHHHhc-CC-CCCeEEEEcCCCh-hHHHHHHHHHH
Q 030411 124 PEFVQSVKSQ-FS-PESKLLVVCQEGL-RSAAAANKLEE 159 (178)
Q Consensus 124 ~~~~~~~~~~-~~-~~~~iviyC~~g~-rs~~aa~~L~~ 159 (178)
++.+.+.++. ++ ...||+|+|..|. |...+...|++
T Consensus 76 ~~~v~~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lRk 114 (164)
T PF03162_consen 76 EEQVAEALEIILDPRNYPVLIHCNHGKDRTGLVVGCLRK 114 (164)
T ss_dssp HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHHH
Confidence 3444444443 33 4579999999764 55544444443
No 329
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=23.44 E-value=1.8e+02 Score=17.48 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=25.5
Q ss_pred HhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCc
Q 030411 131 KSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQ 163 (178)
Q Consensus 131 ~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~ 163 (178)
+..++.+..+.+..+....-.....++...||+
T Consensus 20 l~~l~~g~~l~v~~d~~~~~~~i~~~~~~~g~~ 52 (69)
T cd00291 20 LEKLKSGEVLEVLLDDPGAVEDIPAWAKETGHE 52 (69)
T ss_pred HhcCCCCCEEEEEecCCcHHHHHHHHHHHcCCE
Confidence 455677777777777666667888999999997
No 330
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=23.12 E-value=84 Score=21.19 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=21.2
Q ss_pred cCceeeCHHHHHHHhhcCCeEEEeeCCh
Q 030411 46 ADVNYVNAEEAKNLIAVERYAVLDVRDN 73 (178)
Q Consensus 46 ~~~~~Is~~e~~~~l~~~~~~lIDvR~~ 73 (178)
..+..++.+++...+. +..+|||+|.-
T Consensus 77 ~~f~~l~~~~~~~~~~-~~~~iiD~~~~ 103 (106)
T PF03720_consen 77 DEFRELDWEEIAKLMR-KPPVIIDGRNI 103 (106)
T ss_dssp GGGGCCGHHHHHHHSC-SSEEEEESSST
T ss_pred HHHhccCHHHHHHhcC-CCCEEEECccc
Confidence 4566788899888884 67899999963
No 331
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=23.02 E-value=3.1e+02 Score=20.16 Aligned_cols=28 Identities=36% Similarity=0.527 Sum_probs=18.3
Q ss_pred CCCCCeEEEEcCCCh-hHHH-HHHHHHHcC
Q 030411 134 FSPESKLLVVCQEGL-RSAA-AANKLEEAG 161 (178)
Q Consensus 134 ~~~~~~iviyC~~g~-rs~~-aa~~L~~~G 161 (178)
..++.+|+|+|..|. ||.. ++.+|.+.|
T Consensus 95 ~~~g~~V~VHC~aGigRSgt~~a~yL~~~~ 124 (166)
T PTZ00242 95 STPPETIAVHCVAGLGRAPILVALALVEYG 124 (166)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHhC
Confidence 356889999999754 5553 455555544
No 332
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=22.93 E-value=50 Score=23.01 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=18.7
Q ss_pred CChhHHHHHHHHHHcCCc--eEEEe
Q 030411 146 EGLRSAAAANKLEEAGFQ--NIACI 168 (178)
Q Consensus 146 ~g~rs~~aa~~L~~~G~~--~v~~l 168 (178)
+|.|+...+.+|+..|++ ++.+.
T Consensus 60 ~G~Ra~DmalRLkyAGv~~~~i~v~ 84 (113)
T PF08353_consen 60 SGTRAEDMALRLKYAGVDEEKIIVE 84 (113)
T ss_pred EeeeHHHHHhHeeecCcchHHeEec
Confidence 588999999999999997 35443
No 333
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=22.90 E-value=1.6e+02 Score=28.02 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=30.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEecc
Q 030411 135 SPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITS 170 (178)
Q Consensus 135 ~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~G 170 (178)
.++.+|+|.|.+-..|...+..|.+.|++ ...|.+
T Consensus 428 ~~grpVLIft~Si~~se~Ls~~L~~~gi~-~~vLna 462 (830)
T PRK12904 428 KKGQPVLVGTVSIEKSELLSKLLKKAGIP-HNVLNA 462 (830)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHCCCc-eEeccC
Confidence 56789999999988999999999999986 556655
No 334
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=22.70 E-value=1.4e+02 Score=20.47 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=27.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEecccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGL 172 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 172 (178)
.+..+||.|-....+...+..+.+.|+ .|.-+.+-+
T Consensus 65 ~~~Dvvf~a~~~~~~~~~~~~~~~~g~-~ViD~s~~~ 100 (121)
T PF01118_consen 65 SDVDVVFLALPHGASKELAPKLLKAGI-KVIDLSGDF 100 (121)
T ss_dssp TTESEEEE-SCHHHHHHHHHHHHHTTS-EEEESSSTT
T ss_pred hcCCEEEecCchhHHHHHHHHHhhCCc-EEEeCCHHH
Confidence 466799999987888899999999998 466665544
No 335
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=22.63 E-value=2.3e+02 Score=24.84 Aligned_cols=43 Identities=12% Similarity=0.054 Sum_probs=30.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHc-------CC----------------------ceEEEecccccccc
Q 030411 134 FSPESKLLVVCQEGLRSAAAANKLEEA-------GF----------------------QNIACITSGLQTVK 176 (178)
Q Consensus 134 ~~~~~~iviyC~~g~rs~~aa~~L~~~-------G~----------------------~~v~~l~GG~~~w~ 176 (178)
.+.+-.-|++|++|..+..+|-.|.+. ++ .+|..+.|+|+++.
T Consensus 118 ~p~~~~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t 189 (464)
T TIGR00699 118 APKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRL 189 (464)
T ss_pred CCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCcc
Confidence 343445688999999988877776642 22 15778899999874
No 336
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=22.56 E-value=2e+02 Score=21.35 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=24.6
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCc
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQ 163 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~ 163 (178)
++++++++++ +|.+...+.+.|++.|-+
T Consensus 103 ~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~ 133 (170)
T PRK13811 103 KGKRVLLVEDVTTSGGSALYGIEQLRAAGAV 133 (170)
T ss_pred CCCEEEEEEecccccHHHHHHHHHHHHCCCe
Confidence 6889999987 788889999999999974
No 337
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=22.52 E-value=1.1e+02 Score=21.25 Aligned_cols=30 Identities=20% Similarity=0.488 Sum_probs=24.1
Q ss_pred CceeeCHHHHHHHhhcC-CeEEEeeCChhhh
Q 030411 47 DVNYVNAEEAKNLIAVE-RYAVLDVRDNSQY 76 (178)
Q Consensus 47 ~~~~Is~~e~~~~l~~~-~~~lIDvR~~~e~ 76 (178)
.-.+|+.+++.++..++ ++.++|..+-++-
T Consensus 16 tS~YITLedi~~lV~~g~~f~V~DakTgeDi 46 (107)
T TIGR01848 16 TSSYVTLEDIRDLVREGREFQVVDSKSGDDL 46 (107)
T ss_pred ccceeeHHHHHHHHHCCCeEEEEECCCCchh
Confidence 34689999999999765 7889999986553
No 338
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=22.47 E-value=3.3e+02 Score=21.03 Aligned_cols=12 Identities=33% Similarity=0.299 Sum_probs=7.5
Q ss_pred HhhcCCeEEEee
Q 030411 59 LIAVERYAVLDV 70 (178)
Q Consensus 59 ~l~~~~~~lIDv 70 (178)
++++-+.+++|+
T Consensus 4 ~~~~~~~~~~D~ 15 (242)
T TIGR01459 4 LINDYDVFLLDL 15 (242)
T ss_pred hhhcCCEEEEec
Confidence 344446678887
No 339
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=22.45 E-value=3.3e+02 Score=22.91 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=18.8
Q ss_pred CeEEEE----cCCChh--HHHHHHHHHHcCCceEEE
Q 030411 138 SKLLVV----CQEGLR--SAAAANKLEEAGFQNIAC 167 (178)
Q Consensus 138 ~~iviy----C~~g~r--s~~aa~~L~~~G~~~v~~ 167 (178)
.++|+. |.-|.+ +..+.+.++..|++-.++
T Consensus 148 a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fv 183 (339)
T COG3367 148 AKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFV 183 (339)
T ss_pred CcEEEEeccccccchhHHHHHHHHHHHHhCCccceE
Confidence 445554 334554 557888899999974333
No 340
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=22.42 E-value=3e+02 Score=22.84 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=32.3
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHH--cCCceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEE--AGFQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~--~G~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+.+..-++++++|..+..++-.+.. .+-+.|...+++|.+|.
T Consensus 83 ~l~~~l~~~~~~~~~~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~ 136 (413)
T cd00610 83 ELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRT 136 (413)
T ss_pred HHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCcc
Confidence 34444444444234457778888888876665442 34456888888888863
No 341
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=22.29 E-value=1.5e+02 Score=19.86 Aligned_cols=26 Identities=31% Similarity=0.597 Sum_probs=19.0
Q ss_pred CeEEEEcCCChhHHH-----HHHHHHHcCCc
Q 030411 138 SKLLVVCQEGLRSAA-----AANKLEEAGFQ 163 (178)
Q Consensus 138 ~~iviyC~~g~rs~~-----aa~~L~~~G~~ 163 (178)
.+|++.|.+|.-+.. +-..|++.|++
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~ 32 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKELGID 32 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHHcCCC
Confidence 479999998876543 34568888984
No 342
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=22.29 E-value=2.4e+02 Score=22.08 Aligned_cols=38 Identities=21% Similarity=0.360 Sum_probs=29.0
Q ss_pred hcCCCCCeEEEEcCCChhHHHHHHHHHHcCCce-EEEec
Q 030411 132 SQFSPESKLLVVCQEGLRSAAAANKLEEAGFQN-IACIT 169 (178)
Q Consensus 132 ~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~-v~~l~ 169 (178)
..++.+.+++.+.....+...|.+.+++.|+.+ |..+.
T Consensus 79 ~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~ 117 (219)
T COG4122 79 LALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLL 117 (219)
T ss_pred hhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEe
Confidence 345656677777777889999999999999977 55554
No 343
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=22.16 E-value=1.5e+02 Score=24.01 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCChhHHH-HHHHHHHcC
Q 030411 136 PESKLLVVCQEGLRSAA-AANKLEEAG 161 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~-aa~~L~~~G 161 (178)
++.++++..|++.++.. .+..|...|
T Consensus 39 ~g~~~iflTNn~~~s~~~~~~~L~~~~ 65 (269)
T COG0647 39 AGKPVIFLTNNSTRSREVVAARLSSLG 65 (269)
T ss_pred cCCeEEEEeCCCCCCHHHHHHHHHhhc
Confidence 67899999998888776 777888844
No 344
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=22.15 E-value=2e+02 Score=21.82 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=24.6
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCce
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQN 164 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~ 164 (178)
++++|+++++ +|.+...+.+.|++.|.+.
T Consensus 112 ~g~~VliVDDvi~tG~Tl~~~~~~l~~~Ga~~ 143 (202)
T PRK00455 112 FGKRVLVVEDVITTGGSVLEAVEAIRAAGAEV 143 (202)
T ss_pred CCCEEEEEecccCCcHHHHHHHHHHHHcCCEE
Confidence 5789999987 6888889999999999753
No 345
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=22.07 E-value=2.4e+02 Score=21.06 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=28.2
Q ss_pred HHHHHHhcCCCCCeEEEEcC--CChhHHHHHHHHHHcCCc--eEEEecc
Q 030411 126 FVQSVKSQFSPESKLLVVCQ--EGLRSAAAANKLEEAGFQ--NIACITS 170 (178)
Q Consensus 126 ~~~~~~~~~~~~~~iviyC~--~g~rs~~aa~~L~~~G~~--~v~~l~G 170 (178)
+++.+....+. .+++|+.. +|.-+..+|..|...|++ .+..+++
T Consensus 55 y~~~I~~~~~~-gp~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~ 102 (229)
T PF00975_consen 55 YAEAIRARQPE-GPYVLAGWSFGGILAFEMARQLEEAGEEVSRLILIDS 102 (229)
T ss_dssp HHHHHHHHTSS-SSEEEEEETHHHHHHHHHHHHHHHTT-SESEEEEESC
T ss_pred HHHHhhhhCCC-CCeeehccCccHHHHHHHHHHHHHhhhccCceEEecC
Confidence 44443333333 37777755 577888999999999985 3555664
No 346
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=22.05 E-value=1.4e+02 Score=25.68 Aligned_cols=32 Identities=13% Similarity=0.243 Sum_probs=27.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEec
Q 030411 137 ESKLLVVCQEGLRSAAAANKLEEAGFQNIACIT 169 (178)
Q Consensus 137 ~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~ 169 (178)
...+|+++..|.-....+..+++.|| +|++++
T Consensus 70 ~~s~iV~D~KgEl~~~t~~~r~~~G~-~V~vld 101 (469)
T PF02534_consen 70 PGSMIVTDPKGELYEKTAGYRKKRGY-KVYVLD 101 (469)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHCCC-EEEEee
Confidence 44899999999988899999999999 588775
No 347
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=21.92 E-value=1.8e+02 Score=23.49 Aligned_cols=29 Identities=38% Similarity=0.534 Sum_probs=20.5
Q ss_pred CCCCCeEEEEcCCCh-hHH--HHHHHHHHcCC
Q 030411 134 FSPESKLLVVCQEGL-RSA--AAANKLEEAGF 162 (178)
Q Consensus 134 ~~~~~~iviyC~~g~-rs~--~aa~~L~~~G~ 162 (178)
..++.+|+++|..|. ||. .+|..+...|.
T Consensus 152 ~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~ 183 (285)
T KOG1716|consen 152 REKGGKVLVHCQAGVSRSATLVIAYLMKYEGL 183 (285)
T ss_pred HhCCCeEEEEcCCccchhHHHHHHHHHHHcCC
Confidence 346889999999654 555 56666666665
No 348
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=21.54 E-value=1.6e+02 Score=23.43 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=25.9
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~ 166 (178)
+++.|+|+.+ +|.+...+...|++.|.++|+
T Consensus 149 ~gk~VLIVDDIidTG~Tl~~~~~~L~~~g~~~V~ 182 (241)
T PTZ00149 149 KDKHVLIVEDIIDTGNTLVKFCEYLKKFEPKTIR 182 (241)
T ss_pred CCCEEEEEEeEeChHHHHHHHHHHHHhcCCCEEE
Confidence 5678998876 788888899999999987765
No 349
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=21.45 E-value=2.2e+02 Score=21.64 Aligned_cols=30 Identities=17% Similarity=0.369 Sum_probs=25.9
Q ss_pred CCCCCeEEEEcC---CChhHHHHHHHHHHcCCc
Q 030411 134 FSPESKLLVVCQ---EGLRSAAAANKLEEAGFQ 163 (178)
Q Consensus 134 ~~~~~~iviyC~---~g~rs~~aa~~L~~~G~~ 163 (178)
++++++|+|+++ +|.....+.+.+++.|.+
T Consensus 114 l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~ 146 (191)
T TIGR01744 114 LSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAK 146 (191)
T ss_pred CCCcCEEEEEEehhccChHHHHHHHHHHHCCCE
Confidence 568999999998 688888899999999975
No 350
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=21.25 E-value=1.7e+02 Score=25.26 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=28.8
Q ss_pred HhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCc
Q 030411 131 KSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQ 163 (178)
Q Consensus 131 ~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~ 163 (178)
++.+.++.||+|+..++..+..-...|+..|++
T Consensus 106 LD~~~~d~Pv~l~~~~~H~~~~Ns~al~~~gi~ 138 (479)
T cd01300 106 LDAVSPDRPVLLLRRDGHSAWVNSAALRLAGIT 138 (479)
T ss_pred HhcccCCCcEEEEccCchHHHHHHHHHHHcCCC
Confidence 566778999999999998888888899999985
No 351
>PLN00144 acetylornithine transaminase
Probab=21.01 E-value=2.8e+02 Score=23.26 Aligned_cols=37 Identities=14% Similarity=0.260 Sum_probs=27.4
Q ss_pred EEEEcCCChhHHHHHHHHHHc--C-------------CceEEEecccccccc
Q 030411 140 LLVVCQEGLRSAAAANKLEEA--G-------------FQNIACITSGLQTVK 176 (178)
Q Consensus 140 iviyC~~g~rs~~aa~~L~~~--G-------------~~~v~~l~GG~~~w~ 176 (178)
-|++|++|..+..+|-.|.+. | -.+|..++|+|++|.
T Consensus 74 ~v~f~~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t 125 (382)
T PLN00144 74 RVFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRT 125 (382)
T ss_pred eEEEeCCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCccccc
Confidence 578899999888777776553 1 134778899999875
No 352
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=21.00 E-value=1.4e+02 Score=18.36 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=18.8
Q ss_pred CChhHHHHHHHHHHcCCceEEEecc
Q 030411 146 EGLRSAAAANKLEEAGFQNIACITS 170 (178)
Q Consensus 146 ~g~rs~~aa~~L~~~G~~~v~~l~G 170 (178)
+|.....+|..|.+.|+ +|.+++.
T Consensus 4 aG~sGl~aA~~L~~~g~-~v~v~E~ 27 (68)
T PF13450_consen 4 AGISGLAAAYYLAKAGY-RVTVFEK 27 (68)
T ss_dssp -SHHHHHHHHHHHHTTS-EEEEEES
T ss_pred eCHHHHHHHHHHHHCCC-cEEEEec
Confidence 46677889999999998 5888763
No 353
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=20.97 E-value=2.4e+02 Score=21.76 Aligned_cols=39 Identities=18% Similarity=0.370 Sum_probs=27.5
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCc
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQ 163 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~ 163 (178)
+.+.+.......++++|++.|..+.+ ......|.+.|+.
T Consensus 105 e~L~~~~~~~~~~~~~vL~~rg~~~r-~~l~~~L~~~G~~ 143 (240)
T PRK09189 105 VRLAETVAAALAPTARLLYLAGRPRA-PVFEDRLAAAGIP 143 (240)
T ss_pred HHHHHHHHHhcCCCCcEEEeccCccc-chhHHHHHhCCCe
Confidence 44555544445577889998876555 6788899999974
No 354
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=20.94 E-value=1.8e+02 Score=17.70 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=15.9
Q ss_pred eEEEEcCC-ChhHHHHHHHHHHcCCc
Q 030411 139 KLLVVCQE-GLRSAAAANKLEEAGFQ 163 (178)
Q Consensus 139 ~iviyC~~-g~rs~~aa~~L~~~G~~ 163 (178)
+|++|+.. +..+..+-.+|.+.|++
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~ 27 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLP 27 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCc
Confidence 46666653 55566666777777754
No 355
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=20.75 E-value=3.4e+02 Score=22.13 Aligned_cols=31 Identities=29% Similarity=0.399 Sum_probs=23.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHHcCCceEEEec
Q 030411 138 SKLLVVCQEGLRSAAAANKLEEAGFQNIACIT 169 (178)
Q Consensus 138 ~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~ 169 (178)
++++ ++..|..+.-++..|.+.|.++|+++.
T Consensus 127 ~~vl-ilGAGGAarAv~~aL~~~g~~~i~V~N 157 (283)
T COG0169 127 KRVL-ILGAGGAARAVAFALAEAGAKRITVVN 157 (283)
T ss_pred CEEE-EECCcHHHHHHHHHHHHcCCCEEEEEe
Confidence 4444 445677788899999999998887764
No 356
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=20.72 E-value=2.1e+02 Score=23.09 Aligned_cols=33 Identities=30% Similarity=0.317 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEec
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACIT 169 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~ 169 (178)
.+++++|+. .|..+..++..|.+.|+++|+++.
T Consensus 124 ~~k~vlvlG-aGGaarai~~aL~~~G~~~i~I~n 156 (282)
T TIGR01809 124 AGFRGLVIG-AGGTSRAAVYALASLGVTDITVIN 156 (282)
T ss_pred CCceEEEEc-CcHHHHHHHHHHHHcCCCeEEEEe
Confidence 356676664 466777888889999998888764
No 357
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=20.48 E-value=1.6e+02 Score=24.43 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=22.4
Q ss_pred EEEcCCChhHHHHHHHHHHcCCceEEEecccccccc
Q 030411 141 LVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVK 176 (178)
Q Consensus 141 viyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~ 176 (178)
|++|. .|..-+...+.+.+ .+|.++|+|+|-++
T Consensus 110 V~V~~--dR~~~~~~~~~~~~-~dviilDDGfQh~~ 142 (326)
T PF02606_consen 110 VIVGP--DRVAAARAALKEFP-ADVIILDDGFQHRR 142 (326)
T ss_pred EEEeC--cHHHHHHHHHHHCC-CCEEEEcCCccccc
Confidence 44444 36555555666667 46999999999764
No 358
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=20.41 E-value=1.7e+02 Score=21.47 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=23.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
++++|+|+. +|..+..++..|.+.| ++|.++
T Consensus 166 ~~k~V~VVG-~G~SA~d~a~~l~~~g-~~V~~~ 196 (203)
T PF13738_consen 166 KGKRVVVVG-GGNSAVDIAYALAKAG-KSVTLV 196 (203)
T ss_dssp TTSEEEEE---SHHHHHHHHHHTTTC-SEEEEE
T ss_pred CCCcEEEEc-ChHHHHHHHHHHHhhC-CEEEEE
Confidence 457777774 5688889999999999 678765
No 359
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=20.29 E-value=2.6e+02 Score=20.93 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=27.0
Q ss_pred hcCCCCCeEEEEcC---CChhHHHHHHHHHHcCCc
Q 030411 132 SQFSPESKLLVVCQ---EGLRSAAAANKLEEAGFQ 163 (178)
Q Consensus 132 ~~~~~~~~iviyC~---~g~rs~~aa~~L~~~G~~ 163 (178)
..+.++++|+|+++ +|.+..-....+.+.|.+
T Consensus 111 ~~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~ 145 (179)
T COG0503 111 DALKPGDRVLIVDDLLATGGTALALIELLEQAGAE 145 (179)
T ss_pred hhCCCCCEEEEEecchhcChHHHHHHHHHHHCCCE
Confidence 34568899999998 788888899999999975
No 360
>PRK06031 phosphoribosyltransferase; Provisional
Probab=20.11 E-value=2.4e+02 Score=22.24 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=24.7
Q ss_pred CCCCeEEEEcC---CChhHHHHHHHHHHcCCc
Q 030411 135 SPESKLLVVCQ---EGLRSAAAANKLEEAGFQ 163 (178)
Q Consensus 135 ~~~~~iviyC~---~g~rs~~aa~~L~~~G~~ 163 (178)
.++++|+|+++ +|.....+.+.|++.|-+
T Consensus 152 ~~GkrVLIVDDVitTG~Tl~aa~~lL~~~Ga~ 183 (233)
T PRK06031 152 LEGRRVALIDDVISSGASIVAGLRLLAACGIE 183 (233)
T ss_pred CCCCEEEEEEeEccccHHHHHHHHHHHHcCCe
Confidence 36889999998 788888899999999964
No 361
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=20.03 E-value=4.5e+02 Score=20.88 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=26.5
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceE
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNI 165 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v 165 (178)
.+........++. .+++++-+|..+..-+..+...|++-|
T Consensus 198 ~~~~~~l~~~~p~--~~~vIaegGI~t~ed~~~~~~~Gad~v 237 (260)
T PRK00278 198 LETTERLAPLIPS--DRLVVSESGIFTPEDLKRLAKAGADAV 237 (260)
T ss_pred HHHHHHHHHhCCC--CCEEEEEeCCCCHHHHHHHHHcCCCEE
Confidence 3444444554543 346777888887888888888998744
No 362
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=20.02 E-value=3e+02 Score=20.51 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=28.1
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCC
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGF 162 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~ 162 (178)
.++++.....+.++..++++...-.....+...|++.||
T Consensus 125 ~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 125 KEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF 163 (198)
T ss_pred HHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC
Confidence 456666666778888887755444556678888999998
Done!