Query 030411
Match_columns 178
No_of_seqs 192 out of 1756
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 21:40:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030411.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030411hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3foj_A Uncharacterized protein 99.9 6.6E-27 2.3E-31 160.5 10.6 94 48-177 1-95 (100)
2 3iwh_A Rhodanese-like domain p 99.9 5.9E-27 2E-31 162.0 10.3 94 48-177 1-95 (103)
3 3eme_A Rhodanese-like domain p 99.9 1.7E-26 5.8E-31 159.2 10.5 94 48-177 1-95 (103)
4 1gmx_A GLPE protein; transfera 99.9 1.7E-26 5.8E-31 160.5 9.1 96 47-177 3-98 (108)
5 1tq1_A AT5G66040, senescence-a 99.9 5.1E-26 1.8E-30 163.0 8.4 109 45-177 14-122 (129)
6 3gk5_A Uncharacterized rhodane 99.9 8.3E-26 2.9E-30 157.2 9.1 92 48-177 3-94 (108)
7 1wv9_A Rhodanese homolog TT165 99.9 9E-26 3.1E-30 153.1 7.0 92 48-177 1-92 (94)
8 3d1p_A Putative thiosulfate su 99.9 7.6E-25 2.6E-29 158.5 10.6 109 45-177 19-131 (139)
9 1qxn_A SUD, sulfide dehydrogen 99.9 6E-25 2.1E-29 159.1 9.9 99 46-177 20-122 (137)
10 3hix_A ALR3790 protein; rhodan 99.9 3.6E-25 1.2E-29 153.4 7.0 90 54-177 1-92 (106)
11 2hhg_A Hypothetical protein RP 99.9 1.6E-24 5.5E-29 156.6 9.7 105 46-177 19-126 (139)
12 3g5j_A Putative ATP/GTP bindin 99.9 7.3E-26 2.5E-30 162.0 2.1 124 47-177 3-129 (134)
13 3ilm_A ALR3790 protein; rhodan 99.9 1.5E-24 5E-29 157.8 8.4 93 51-177 2-96 (141)
14 1t3k_A Arath CDC25, dual-speci 99.9 2.1E-24 7.2E-29 158.8 6.8 108 39-177 18-134 (152)
15 3flh_A Uncharacterized protein 99.9 4.8E-24 1.7E-28 151.7 7.8 93 49-177 15-112 (124)
16 3nhv_A BH2092 protein; alpha-b 99.9 1.5E-23 5.2E-28 152.9 9.3 94 49-177 16-113 (144)
17 3i2v_A Adenylyltransferase and 99.9 8.8E-24 3E-28 150.1 7.3 109 49-177 1-118 (127)
18 2fsx_A RV0390, COG0607: rhodan 99.9 4.7E-23 1.6E-27 150.7 11.1 103 47-175 3-118 (148)
19 2k0z_A Uncharacterized protein 99.9 1.3E-23 4.3E-28 146.6 6.9 91 49-177 5-95 (110)
20 4f67_A UPF0176 protein LPG2838 99.9 3.1E-23 1.1E-27 165.1 9.7 130 14-177 92-221 (265)
21 2jtq_A Phage shock protein E; 99.9 4.5E-23 1.5E-27 137.2 8.1 78 64-177 1-80 (85)
22 1vee_A Proline-rich protein fa 99.9 1.6E-22 5.4E-27 145.6 9.6 102 47-177 3-117 (134)
23 1e0c_A Rhodanese, sulfurtransf 99.9 3.6E-22 1.2E-26 158.9 11.8 111 49-177 9-122 (271)
24 1urh_A 3-mercaptopyruvate sulf 99.9 1.3E-21 4.4E-26 156.5 10.9 111 49-177 4-127 (280)
25 3op3_A M-phase inducer phospha 99.9 1.7E-21 5.7E-26 151.0 9.2 100 45-177 53-175 (216)
26 2vsw_A Dual specificity protei 99.9 7.7E-22 2.6E-26 144.7 6.9 110 49-177 4-126 (153)
27 1e0c_A Rhodanese, sulfurtransf 99.9 2.4E-21 8.3E-26 154.1 10.3 108 49-177 147-263 (271)
28 1c25_A CDC25A; hydrolase, cell 99.9 1.5E-21 5.2E-26 144.3 8.4 101 46-177 20-140 (161)
29 1urh_A 3-mercaptopyruvate sulf 99.8 4.5E-21 1.6E-25 153.3 11.6 106 49-177 152-270 (280)
30 3hzu_A Thiosulfate sulfurtrans 99.8 1.8E-21 6.1E-26 158.8 9.1 110 48-177 39-152 (318)
31 1qb0_A Protein (M-phase induce 99.8 4.6E-21 1.6E-25 148.0 10.3 102 45-177 40-162 (211)
32 2a2k_A M-phase inducer phospha 99.8 3.5E-21 1.2E-25 144.3 9.3 101 46-177 21-142 (175)
33 2j6p_A SB(V)-AS(V) reductase; 99.8 4.7E-21 1.6E-25 140.8 9.7 102 47-177 3-115 (152)
34 3aay_A Putative thiosulfate su 99.8 7.5E-21 2.6E-25 151.8 10.4 109 49-177 6-118 (277)
35 1rhs_A Sulfur-substituted rhod 99.8 7.9E-21 2.7E-25 153.3 10.6 107 49-177 160-280 (296)
36 2ouc_A Dual specificity protei 99.8 4.7E-21 1.6E-25 138.0 8.1 109 49-177 1-131 (142)
37 3olh_A MST, 3-mercaptopyruvate 99.8 7.2E-21 2.4E-25 154.2 9.8 107 49-177 175-294 (302)
38 1uar_A Rhodanese; sulfurtransf 99.8 3.5E-21 1.2E-25 154.2 7.5 110 48-177 7-120 (285)
39 1rhs_A Sulfur-substituted rhod 99.8 2.1E-20 7.3E-25 150.7 11.2 111 49-177 8-135 (296)
40 3olh_A MST, 3-mercaptopyruvate 99.8 2.4E-20 8.2E-25 151.1 11.2 111 49-177 22-150 (302)
41 1uar_A Rhodanese; sulfurtransf 99.8 3.2E-20 1.1E-24 148.6 11.6 106 49-176 146-273 (285)
42 3hzu_A Thiosulfate sulfurtrans 99.8 2.7E-20 9.4E-25 151.8 10.0 105 49-177 179-300 (318)
43 3f4a_A Uncharacterized protein 99.8 4E-21 1.4E-25 143.6 4.5 107 46-177 28-151 (169)
44 3tg1_B Dual specificity protei 99.8 5.1E-20 1.7E-24 136.0 9.9 117 46-177 8-141 (158)
45 3aay_A Putative thiosulfate su 99.8 4.9E-20 1.7E-24 147.0 10.6 104 50-177 145-267 (277)
46 3tp9_A Beta-lactamase and rhod 99.8 4.2E-20 1.4E-24 157.8 8.6 96 47-177 372-467 (474)
47 1hzm_A Dual specificity protei 99.8 5.4E-21 1.8E-25 140.2 2.3 116 47-177 14-141 (154)
48 2gwf_A Ubiquitin carboxyl-term 99.8 1.2E-19 4.1E-24 134.0 8.9 114 46-177 17-145 (157)
49 1whb_A KIAA0055; deubiqutinati 99.8 1.5E-19 5.1E-24 133.4 9.2 114 46-177 12-140 (157)
50 3ics_A Coenzyme A-disulfide re 99.8 7.8E-20 2.7E-24 159.5 7.8 96 45-177 485-580 (588)
51 1okg_A Possible 3-mercaptopyru 99.8 2.1E-19 7.3E-24 149.5 9.8 111 48-177 13-136 (373)
52 3ntd_A FAD-dependent pyridine 99.8 7.7E-20 2.6E-24 158.5 7.0 95 45-177 469-563 (565)
53 1yt8_A Thiosulfate sulfurtrans 99.8 2.7E-19 9.2E-24 155.2 10.1 97 47-177 5-103 (539)
54 2wlr_A Putative thiosulfate su 99.8 7E-19 2.4E-23 148.4 11.2 114 49-177 272-398 (423)
55 2eg4_A Probable thiosulfate su 99.8 4.7E-19 1.6E-23 138.0 9.0 93 49-177 121-223 (230)
56 1yt8_A Thiosulfate sulfurtrans 99.8 3.3E-19 1.1E-23 154.7 8.9 97 46-177 374-470 (539)
57 2wlr_A Putative thiosulfate su 99.8 1.7E-18 5.8E-23 146.1 9.9 108 49-177 124-243 (423)
58 2eg4_A Probable thiosulfate su 99.8 3.7E-18 1.3E-22 132.9 9.8 90 63-176 5-97 (230)
59 3r2u_A Metallo-beta-lactamase 99.7 1.9E-19 6.6E-24 153.6 0.0 87 56-177 379-465 (466)
60 1okg_A Possible 3-mercaptopyru 99.7 6.4E-18 2.2E-22 140.6 7.5 94 62-176 172-285 (373)
61 3utn_X Thiosulfate sulfurtrans 99.7 8.6E-17 2.9E-21 131.5 11.5 126 33-177 12-153 (327)
62 3utn_X Thiosulfate sulfurtrans 99.7 9.7E-17 3.3E-21 131.2 11.0 107 50-176 185-314 (327)
63 3tp9_A Beta-lactamase and rhod 99.7 8.6E-17 2.9E-21 137.2 8.9 97 45-177 269-365 (474)
64 3r2u_A Metallo-beta-lactamase 99.4 5.2E-13 1.8E-17 113.8 8.3 78 63-174 295-373 (466)
65 2f46_A Hypothetical protein; s 98.1 4.9E-06 1.7E-10 60.5 6.7 85 50-162 29-128 (156)
66 4erc_A Dual specificity protei 95.3 0.1 3.6E-06 36.4 8.2 88 52-162 24-116 (150)
67 1v8c_A MOAD related protein; r 94.4 0.0053 1.8E-07 45.1 -0.6 26 65-94 122-147 (168)
68 3rgo_A Protein-tyrosine phosph 94.2 0.18 6.1E-06 35.4 7.1 28 135-162 87-117 (157)
69 2img_A Dual specificity protei 93.2 0.53 1.8E-05 32.5 8.2 88 52-162 25-117 (151)
70 1xri_A AT1G05000; structural g 92.6 0.33 1.1E-05 33.9 6.3 28 136-163 91-120 (151)
71 2nt2_A Protein phosphatase sli 92.4 0.5 1.7E-05 32.8 7.0 28 135-162 79-109 (145)
72 2hcm_A Dual specificity protei 92.0 0.63 2.2E-05 33.1 7.3 28 135-162 87-117 (164)
73 2r0b_A Serine/threonine/tyrosi 91.4 1.7 5.8E-05 30.2 8.9 28 135-162 88-118 (154)
74 1yz4_A DUSP15, dual specificit 91.1 1.1 3.7E-05 31.6 7.7 28 135-162 82-112 (160)
75 1ywf_A Phosphotyrosine protein 91.0 0.5 1.7E-05 37.5 6.3 47 45-91 50-102 (296)
76 1wrm_A Dual specificity phosph 90.4 1.1 3.8E-05 31.8 7.3 28 135-162 81-111 (165)
77 2e0t_A Dual specificity phosph 90.1 1.3 4.5E-05 30.7 7.3 27 136-162 84-113 (151)
78 3ezz_A Dual specificity protei 89.5 1.7 5.8E-05 29.9 7.4 28 135-162 79-109 (144)
79 1fpz_A Cyclin-dependent kinase 89.3 2.4 8.2E-05 31.4 8.6 26 134-159 130-157 (212)
80 2esb_A Dual specificity protei 89.1 1.9 6.7E-05 31.4 7.9 28 135-162 95-125 (188)
81 1zzw_A Dual specificity protei 89.0 1.9 6.5E-05 29.8 7.5 28 135-162 81-111 (149)
82 3f81_A Dual specificity protei 88.3 2.2 7.5E-05 30.6 7.6 26 137-162 115-143 (183)
83 2wgp_A Dual specificity protei 88.2 2 6.9E-05 31.3 7.4 28 135-162 101-131 (190)
84 3s4e_A Dual specificity protei 88.0 3 0.0001 28.7 7.9 28 135-162 79-109 (144)
85 2pq5_A Dual specificity protei 87.1 6.2 0.00021 29.0 9.6 27 136-162 130-159 (205)
86 2jgn_A DBX, DDX3, ATP-dependen 86.8 1.3 4.4E-05 32.2 5.6 46 127-173 36-81 (185)
87 3rz2_A Protein tyrosine phosph 86.2 6.4 0.00022 28.4 9.2 28 135-162 115-144 (189)
88 2g6z_A Dual specificity protei 85.5 3.9 0.00013 30.6 7.8 28 135-162 81-111 (211)
89 3s4o_A Protein tyrosine phosph 85.1 6.4 0.00022 27.3 8.5 27 136-162 108-137 (167)
90 2q05_A Late protein H1, dual s 84.9 2.8 9.4E-05 30.7 6.6 29 135-163 123-154 (195)
91 3cm3_A Late protein H1, dual s 83.7 5.8 0.0002 28.2 7.9 28 136-163 107-137 (176)
92 2y96_A Dual specificity phosph 83.6 8.1 0.00028 28.8 8.9 28 135-162 137-167 (219)
93 2rb4_A ATP-dependent RNA helic 80.7 3.5 0.00012 29.2 5.6 37 136-173 33-69 (175)
94 1rxd_A Protein tyrosine phosph 78.8 13 0.00045 25.4 8.3 28 135-162 94-123 (159)
95 2hjv_A ATP-dependent RNA helic 78.7 2.7 9.2E-05 29.5 4.4 37 136-173 34-70 (163)
96 1ohe_A CDC14B, CDC14B2 phospha 78.4 13 0.00046 29.8 9.0 28 135-162 267-297 (348)
97 1t5i_A C_terminal domain of A 78.0 4.8 0.00016 28.6 5.6 37 136-173 30-66 (172)
98 1fuk_A Eukaryotic initiation f 77.5 5.1 0.00017 28.0 5.6 37 136-173 29-65 (165)
99 2i4i_A ATP-dependent RNA helic 74.1 6.6 0.00023 31.4 6.1 48 125-173 264-311 (417)
100 1yn9_A BVP, polynucleotide 5'- 73.8 6.6 0.00023 27.7 5.4 27 136-162 112-141 (169)
101 2j16_A SDP-1, tyrosine-protein 73.7 18 0.00063 26.1 7.9 28 135-162 115-145 (182)
102 2hxp_A Dual specificity protei 71.9 4.1 0.00014 28.4 3.9 28 135-162 83-113 (155)
103 2c46_A MRNA capping enzyme; ph 70.7 18 0.00063 27.3 7.6 24 50-73 66-92 (241)
104 3gxh_A Putative phosphatase (D 70.4 24 0.00083 24.5 8.0 26 50-75 27-52 (157)
105 3eaq_A Heat resistant RNA depe 68.1 5.9 0.0002 29.2 4.2 37 136-173 30-66 (212)
106 2v1x_A ATP-dependent DNA helic 67.5 9.9 0.00034 32.8 6.0 37 136-173 266-302 (591)
107 1jzt_A Hypothetical 27.5 kDa p 67.1 15 0.00051 28.1 6.4 30 138-168 59-91 (246)
108 2oud_A Dual specificity protei 66.9 6 0.0002 28.3 3.9 28 135-162 85-115 (177)
109 2p6n_A ATP-dependent RNA helic 64.9 7.9 0.00027 28.0 4.3 36 137-173 54-89 (191)
110 3v0d_A Voltage-sensor containi 64.7 10 0.00035 30.5 5.2 41 51-91 50-94 (339)
111 3to5_A CHEY homolog; alpha(5)b 64.7 7.9 0.00027 26.5 4.0 42 134-175 9-50 (134)
112 3nme_A Ptpkis1 protein, SEX4 g 64.2 26 0.0009 27.3 7.5 27 136-162 105-134 (294)
113 3emu_A Leucine rich repeat and 64.0 8.4 0.00029 27.1 4.2 28 135-162 85-115 (161)
114 3d3k_A Enhancer of mRNA-decapp 63.6 10 0.00034 29.3 4.8 30 138-168 86-118 (259)
115 2i6j_A Ssoptp, sulfolobus solf 63.5 32 0.0011 23.4 8.7 25 53-77 18-42 (161)
116 1vdm_A Purine phosphoribosyltr 61.8 9.1 0.00031 26.5 4.0 32 136-167 82-116 (153)
117 2o8n_A APOA-I binding protein; 61.8 11 0.00039 29.2 4.8 30 138-168 80-112 (265)
118 3d3j_A Enhancer of mRNA-decapp 60.5 12 0.00041 29.7 4.8 30 138-168 133-165 (306)
119 1vch_A Phosphoribosyltransfera 60.1 12 0.0004 26.6 4.4 32 136-167 119-153 (175)
120 3ohg_A Uncharacterized protein 59.6 11 0.00038 29.6 4.5 26 147-172 218-243 (285)
121 3i32_A Heat resistant RNA depe 58.0 14 0.00046 29.1 4.8 36 137-173 28-63 (300)
122 4fak_A Ribosomal RNA large sub 57.3 15 0.0005 26.5 4.4 47 129-175 66-117 (163)
123 4atq_A 4-aminobutyrate transam 57.0 19 0.00066 29.9 5.8 51 126-176 112-165 (456)
124 1zn8_A APRT, adenine phosphori 56.9 14 0.00048 26.3 4.4 33 135-167 118-153 (180)
125 3nbm_A PTS system, lactose-spe 56.5 9.8 0.00033 25.3 3.2 32 135-167 4-39 (108)
126 1i5e_A Uracil phosphoribosyltr 56.4 18 0.0006 26.9 4.9 33 136-168 123-158 (209)
127 4e3q_A Pyruvate transaminase; 56.2 21 0.00073 29.8 5.9 52 125-176 115-174 (473)
128 2d7d_A Uvrabc system protein B 56.0 17 0.00057 31.8 5.4 46 126-172 434-479 (661)
129 2geb_A Hypoxanthine-guanine ph 55.7 14 0.00049 26.6 4.2 32 136-167 97-131 (185)
130 1oyw_A RECQ helicase, ATP-depe 55.4 13 0.00044 31.5 4.5 37 136-173 235-271 (523)
131 2dy0_A APRT, adenine phosphori 55.4 15 0.00052 26.5 4.3 32 135-166 124-158 (190)
132 1y0b_A Xanthine phosphoribosyl 54.5 16 0.00054 26.5 4.3 32 135-166 118-152 (197)
133 1xti_A Probable ATP-dependent 54.5 15 0.00053 28.8 4.6 37 136-173 249-285 (391)
134 1hgx_A HGXPRTASE, hypoxanthine 54.2 16 0.00054 26.2 4.3 32 136-167 94-128 (183)
135 1wd5_A Hypothetical protein TT 53.8 19 0.00065 26.4 4.7 34 136-169 119-155 (208)
136 1c4o_A DNA nucleotide excision 53.5 15 0.00051 32.2 4.7 46 126-172 428-473 (664)
137 1g2q_A Adenine phosphoribosylt 53.3 17 0.00059 26.1 4.3 32 135-166 120-154 (187)
138 1dku_A Protein (phosphoribosyl 53.0 21 0.0007 28.4 5.1 34 136-169 216-252 (317)
139 1hv8_A Putative ATP-dependent 52.9 17 0.00058 28.1 4.6 38 135-173 236-273 (367)
140 1ufr_A TT1027, PYR mRNA-bindin 52.6 18 0.00061 25.8 4.3 32 136-167 95-130 (181)
141 3czc_A RMPB; alpha/beta sandwi 52.1 27 0.00092 22.9 4.8 26 138-163 19-49 (110)
142 1yfz_A Hypoxanthine-guanine ph 52.0 17 0.00059 26.6 4.2 32 136-167 117-151 (205)
143 1s2m_A Putative ATP-dependent 51.9 15 0.00053 29.0 4.2 37 136-173 257-293 (400)
144 1a3c_A PYRR, pyrimidine operon 50.8 19 0.00066 25.6 4.3 32 136-167 97-132 (181)
145 1tc1_A Protein (hypoxanthine p 49.9 19 0.00066 26.9 4.2 32 136-167 102-136 (220)
146 3i5x_A ATP-dependent RNA helic 49.7 28 0.00094 29.2 5.7 38 135-173 337-377 (563)
147 2yjt_D ATP-dependent RNA helic 55.1 3.5 0.00012 29.1 0.0 37 136-173 29-65 (170)
148 1o5o_A Uracil phosphoribosyltr 49.5 28 0.00096 26.2 5.1 33 136-168 135-170 (221)
149 1vbk_A Hypothetical protein PH 49.4 15 0.0005 29.0 3.7 28 137-166 179-206 (307)
150 3hh1_A Tetrapyrrole methylase 49.3 41 0.0014 22.1 5.5 43 127-170 69-116 (117)
151 1pzm_A HGPRT, hypoxanthine-gua 49.0 21 0.00071 26.4 4.3 32 136-167 117-151 (211)
152 3fht_A ATP-dependent RNA helic 48.8 18 0.0006 28.7 4.1 37 136-173 265-301 (412)
153 3pey_A ATP-dependent RNA helic 48.5 19 0.00063 28.2 4.2 37 136-173 242-278 (395)
154 4ao9_A Beta-phenylalanine amin 48.1 27 0.00093 29.1 5.3 41 137-177 142-184 (454)
155 1wp9_A ATP-dependent RNA helic 48.1 28 0.00094 27.8 5.2 35 135-170 359-393 (494)
156 1l1q_A Adenine phosphoribosylt 47.9 24 0.00081 25.4 4.4 32 135-166 115-151 (186)
157 1to0_A Hypothetical UPF0247 pr 47.9 22 0.00074 25.7 4.0 47 129-175 62-113 (167)
158 1ao0_A Glutamine phosphoribosy 47.7 26 0.00088 29.2 5.1 33 136-168 337-372 (459)
159 2p1z_A Phosphoribosyltransfera 47.2 22 0.00075 25.5 4.1 32 135-166 112-146 (180)
160 2j0s_A ATP-dependent RNA helic 46.6 20 0.00068 28.5 4.1 36 137-173 276-311 (410)
161 3sqw_A ATP-dependent RNA helic 46.5 32 0.0011 29.1 5.6 38 135-173 286-326 (579)
162 2aee_A OPRT, oprtase, orotate 46.5 25 0.00084 25.8 4.3 31 135-165 115-148 (211)
163 3rss_A Putative uncharacterize 46.4 23 0.00079 30.0 4.6 30 136-166 51-83 (502)
164 3kwp_A Predicted methyltransfe 46.2 85 0.0029 24.5 7.6 93 47-170 27-125 (296)
165 1u9y_A RPPK;, ribose-phosphate 46.1 24 0.00081 27.5 4.4 33 136-168 204-239 (284)
166 2ywu_A Hypoxanthine-guanine ph 45.5 27 0.00092 25.2 4.3 31 136-166 94-127 (181)
167 2l2q_A PTS system, cellobiose- 45.2 9.2 0.00032 25.2 1.6 28 136-163 3-34 (109)
168 2e55_A Uracil phosphoribosyltr 44.5 29 0.001 25.8 4.5 33 136-168 120-155 (208)
169 2wns_A Orotate phosphoribosylt 44.3 25 0.00087 25.7 4.1 32 135-166 109-143 (205)
170 4a29_A Engineered retro-aldol 44.2 85 0.0029 24.2 7.1 40 124-165 191-230 (258)
171 1qb7_A APRT, adenine phosphori 43.9 31 0.0011 25.9 4.6 32 135-166 136-170 (236)
172 2yzk_A OPRT, oprtase, orotate 43.2 31 0.0011 24.6 4.3 31 136-166 105-138 (178)
173 1w30_A PYRR bifunctional prote 43.1 30 0.001 25.3 4.3 31 136-166 111-145 (201)
174 3hvu_A Hypoxanthine phosphorib 43.1 34 0.0011 25.3 4.6 31 136-166 115-148 (204)
175 2jbh_A Phosphoribosyltransfera 43.0 29 0.00098 25.9 4.3 31 136-166 133-166 (225)
176 3ohp_A Hypoxanthine phosphorib 42.8 31 0.001 24.8 4.2 32 136-167 90-124 (177)
177 1ecf_A Glutamine phosphoribosy 42.2 32 0.0011 29.0 4.8 33 136-168 358-393 (504)
178 4etn_A LMPTP, low molecular we 42.1 17 0.00057 26.6 2.7 39 137-176 34-77 (184)
179 3rh0_A Arsenate reductase; oxi 41.9 27 0.00091 24.5 3.7 36 138-173 21-57 (148)
180 3o7m_A Hypoxanthine phosphorib 41.7 32 0.0011 24.9 4.2 31 136-166 93-126 (186)
181 1fsg_A HGPRTASE, hypoxanthine- 41.6 31 0.0011 25.8 4.3 31 136-166 141-174 (233)
182 1tvm_A PTS system, galactitol- 41.6 20 0.00067 23.8 2.8 27 137-163 21-52 (113)
183 2l17_A Synarsc, arsenate reduc 41.2 34 0.0012 23.3 4.1 34 139-172 6-40 (134)
184 3s5j_B Ribose-phosphate pyroph 40.7 34 0.0012 27.3 4.5 33 136-168 212-247 (326)
185 1z5z_A Helicase of the SNF2/RA 40.5 24 0.00083 27.0 3.6 38 135-173 110-148 (271)
186 1jf8_A Arsenate reductase; ptp 40.2 34 0.0012 23.2 3.9 37 138-174 4-41 (131)
187 2ps1_A Orotate phosphoribosylt 39.8 36 0.0012 25.3 4.4 31 136-166 124-157 (226)
188 1v9s_A Uracil phosphoribosyltr 39.3 30 0.001 25.7 3.8 32 137-168 123-157 (208)
189 3dah_A Ribose-phosphate pyroph 39.0 37 0.0013 27.0 4.5 33 136-168 215-250 (319)
190 2ehj_A Uracil phosphoribosyltr 38.4 34 0.0012 25.4 4.0 32 137-168 123-157 (208)
191 3dez_A OPRT, oprtase, orotate 38.3 43 0.0015 25.5 4.6 33 134-166 146-181 (243)
192 3ndc_A Precorrin-4 C(11)-methy 38.1 1.2E+02 0.0042 22.9 7.3 35 135-170 74-112 (264)
193 2db3_A ATP-dependent RNA helic 37.7 57 0.0019 26.4 5.6 34 139-173 302-335 (434)
194 3o8b_A HCV NS3 protease/helica 37.5 33 0.0011 30.2 4.3 37 136-173 395-431 (666)
195 3lrt_A Ribose-phosphate pyroph 36.9 44 0.0015 26.1 4.6 33 136-168 202-237 (286)
196 1e2b_A Enzyme IIB-cellobiose; 36.7 25 0.00085 23.0 2.7 26 138-163 4-33 (106)
197 3m3h_A OPRT, oprtase, orotate 36.4 49 0.0017 25.0 4.6 33 134-166 134-169 (234)
198 1z7g_A HGPRT, HGPRTASE, hypoxa 36.3 34 0.0012 25.3 3.7 31 136-166 125-158 (217)
199 2c5s_A THII, probable thiamine 35.8 21 0.00072 29.3 2.7 28 136-163 186-213 (413)
200 2ji4_A Phosphoribosyl pyrophos 35.7 44 0.0015 27.2 4.5 33 136-168 271-306 (379)
201 1o6d_A Hypothetical UPF0247 pr 35.4 44 0.0015 23.9 4.0 47 129-176 57-108 (163)
202 3eiq_A Eukaryotic initiation f 35.0 24 0.00081 28.0 2.8 37 136-173 279-315 (414)
203 4etm_A LMPTP, low molecular we 34.6 52 0.0018 23.5 4.4 40 138-177 19-64 (173)
204 1vkr_A Mannitol-specific PTS s 34.5 32 0.0011 23.3 3.0 27 136-162 12-43 (125)
205 1d5r_A Phosphoinositide phosph 34.5 1.6E+02 0.0056 22.9 8.2 41 51-91 42-86 (324)
206 3fpn_A Geobacillus stearotherm 34.0 82 0.0028 21.1 5.0 40 126-167 9-53 (119)
207 1o54_A SAM-dependent O-methylt 33.3 26 0.00087 26.5 2.6 51 125-175 194-244 (277)
208 3dmp_A Uracil phosphoribosyltr 32.9 59 0.002 24.3 4.5 32 137-168 129-165 (217)
209 3hmu_A Aminotransferase, class 32.3 71 0.0024 26.3 5.4 51 126-176 104-162 (472)
210 3e05_A Precorrin-6Y C5,15-meth 32.3 97 0.0033 21.7 5.6 39 124-162 122-160 (204)
211 3dfz_A SIRC, precorrin-2 dehyd 31.9 40 0.0014 25.3 3.5 31 137-169 31-61 (223)
212 4e16_A Precorrin-4 C(11)-methy 31.3 1.6E+02 0.0056 21.9 7.7 38 132-170 72-113 (253)
213 2fsf_A Preprotein translocase 30.7 55 0.0019 29.8 4.6 37 135-172 439-475 (853)
214 1tf5_A Preprotein translocase 30.6 32 0.0011 31.3 3.1 36 136-172 431-466 (844)
215 3tsm_A IGPS, indole-3-glycerol 30.5 1.9E+02 0.0063 22.3 7.7 40 124-165 207-246 (272)
216 3jux_A Protein translocase sub 30.5 34 0.0012 30.9 3.2 36 136-172 473-508 (822)
217 1bd3_D Uprtase, uracil phospho 30.4 51 0.0017 25.1 3.8 32 137-168 156-192 (243)
218 3mb5_A SAM-dependent methyltra 29.6 33 0.0011 25.3 2.7 52 124-175 174-227 (255)
219 3ozf_A Hypoxanthine-guanine-xa 29.5 58 0.002 24.9 4.0 31 136-166 155-188 (250)
220 1lh0_A OMP synthase; loop clos 29.4 75 0.0026 23.3 4.6 30 136-166 117-149 (213)
221 2pwy_A TRNA (adenine-N(1)-)-me 29.0 24 0.00082 26.0 1.8 52 124-175 178-229 (258)
222 1pdo_A Mannose permease; phosp 28.9 1.3E+02 0.0045 20.1 5.8 42 128-170 49-91 (135)
223 1wyz_A Putative S-adenosylmeth 28.7 1.4E+02 0.0048 22.2 6.1 43 127-170 73-120 (242)
224 4gl2_A Interferon-induced heli 28.6 62 0.0021 27.8 4.6 34 137-171 400-439 (699)
225 3mwy_W Chromo domain-containin 28.6 71 0.0024 28.4 5.0 39 134-173 569-607 (800)
226 3n5m_A Adenosylmethionine-8-am 28.2 76 0.0026 25.5 4.9 49 126-175 96-152 (452)
227 1jbe_A Chemotaxis protein CHEY 28.1 70 0.0024 20.1 3.9 31 139-169 6-36 (128)
228 3mjd_A Orotate phosphoribosylt 28.1 78 0.0027 23.8 4.5 29 136-164 135-166 (232)
229 3n0a_A Tyrosine-protein phosph 27.8 2.4E+02 0.0081 22.7 9.4 38 52-90 48-89 (361)
230 3jx9_A Putative phosphoheptose 27.7 89 0.003 22.3 4.6 35 133-168 74-110 (170)
231 3q87_B N6 adenine specific DNA 27.7 95 0.0032 21.3 4.7 43 124-167 104-146 (170)
232 3i5t_A Aminotransferase; pyrid 27.4 1.3E+02 0.0045 24.6 6.2 52 125-176 101-160 (476)
233 1nkt_A Preprotein translocase 27.4 56 0.0019 30.0 4.1 37 135-172 458-494 (922)
234 3ipz_A Monothiol glutaredoxin- 27.0 67 0.0023 20.6 3.6 28 136-163 16-49 (109)
235 3h1g_A Chemotaxis protein CHEY 26.7 60 0.002 20.7 3.3 27 140-166 8-34 (129)
236 1o57_A PUR operon repressor; p 26.5 56 0.0019 25.5 3.6 33 134-166 193-228 (291)
237 2wja_A Putative acid phosphata 26.2 71 0.0024 22.7 3.8 36 138-174 27-63 (168)
238 4ao6_A Esterase; hydrolase, th 26.2 60 0.0021 23.9 3.6 32 137-169 55-92 (259)
239 3e8x_A Putative NAD-dependent 26.2 91 0.0031 22.4 4.6 33 136-169 20-52 (236)
240 1yks_A Genome polyprotein [con 25.9 68 0.0023 26.2 4.2 33 137-170 177-209 (440)
241 3t38_A Arsenate reductase; low 25.9 57 0.0019 24.3 3.4 37 136-172 80-117 (213)
242 4h3k_B RNA polymerase II subun 25.6 90 0.0031 23.3 4.3 30 138-168 26-56 (214)
243 2fek_A Low molecular weight pr 25.5 83 0.0028 22.3 4.1 36 138-174 23-59 (167)
244 1z63_A Helicase of the SNF2/RA 25.5 67 0.0023 26.3 4.1 39 134-173 338-377 (500)
245 3fmp_B ATP-dependent RNA helic 25.4 15 0.00051 30.2 0.0 37 136-173 332-368 (479)
246 1z3i_X Similar to RAD54-like; 25.3 72 0.0025 27.6 4.4 37 136-173 415-451 (644)
247 4egs_A Ribose 5-phosphate isom 24.9 1E+02 0.0035 22.0 4.5 40 136-176 33-77 (180)
248 2g1u_A Hypothetical protein TM 24.9 1.1E+02 0.0039 20.5 4.7 32 136-169 18-49 (155)
249 4a6r_A Omega transaminase; tra 24.6 1.4E+02 0.0047 24.1 5.8 51 126-176 99-157 (459)
250 1yzh_A TRNA (guanine-N(7)-)-me 24.4 1.6E+02 0.0054 20.8 5.6 45 124-168 136-180 (214)
251 2j48_A Two-component sensor ki 24.4 79 0.0027 19.1 3.5 7 156-162 20-26 (119)
252 2dpl_A GMP synthetase, GMP syn 24.3 1E+02 0.0035 24.0 4.7 35 137-172 20-57 (308)
253 1c3p_A Protein (HDLP (histone 24.3 2E+02 0.0068 23.2 6.6 24 152-175 277-300 (375)
254 3mm4_A Histidine kinase homolo 24.3 81 0.0028 22.4 3.9 39 136-174 60-98 (206)
255 3l44_A Glutamate-1-semialdehyd 24.2 1.3E+02 0.0046 23.8 5.6 51 125-176 99-151 (434)
256 3oks_A 4-aminobutyrate transam 23.6 1.5E+02 0.0052 23.9 5.9 52 125-176 108-162 (451)
257 4ehx_A Tetraacyldisaccharide 4 23.5 87 0.003 24.6 4.2 34 140-176 112-145 (315)
258 1wy5_A TILS, hypothetical UPF0 23.5 1.4E+02 0.0047 23.2 5.4 39 134-172 21-65 (317)
259 3k5w_A Carbohydrate kinase; 11 23.5 1.1E+02 0.0037 25.7 4.9 36 130-167 39-77 (475)
260 2z83_A Helicase/nucleoside tri 23.4 85 0.0029 25.8 4.3 33 137-170 190-222 (459)
261 2zfz_A Arginine repressor; DNA 23.4 70 0.0024 19.6 3.0 26 134-159 52-77 (79)
262 1xxa_A ARGR, arginine represso 23.2 72 0.0025 19.6 2.9 26 135-160 48-73 (78)
263 1ns5_A Hypothetical protein YB 23.2 59 0.002 23.0 2.8 44 130-175 60-108 (155)
264 4a0g_A Adenosylmethionine-8-am 22.9 1.3E+02 0.0045 27.0 5.7 51 125-175 428-496 (831)
265 1yb2_A Hypothetical protein TA 22.8 35 0.0012 25.8 1.7 46 124-169 191-236 (275)
266 1b4b_A Arginine repressor; cor 22.7 65 0.0022 19.4 2.6 25 135-159 45-69 (71)
267 4dfc_B Uvrabc system protein A 22.7 1E+02 0.0036 20.8 4.0 34 133-167 17-55 (126)
268 4ffc_A 4-aminobutyrate aminotr 22.7 1.6E+02 0.0056 23.7 5.9 52 125-176 111-165 (453)
269 3oiy_A Reverse gyrase helicase 22.6 67 0.0023 25.5 3.4 33 137-170 252-285 (414)
270 2b4a_A BH3024; flavodoxin-like 22.5 90 0.0031 19.9 3.6 37 136-173 14-50 (138)
271 3dmq_A RNA polymerase-associat 22.4 94 0.0032 28.4 4.7 38 135-173 501-539 (968)
272 2v6i_A RNA helicase; membrane, 22.2 91 0.0031 25.3 4.2 34 137-171 171-204 (431)
273 3eod_A Protein HNR; response r 21.9 93 0.0032 19.6 3.6 32 137-169 7-38 (130)
274 2jlq_A Serine protease subunit 21.8 83 0.0029 25.7 3.9 35 137-172 188-222 (451)
275 1xtt_A Probable uracil phospho 21.6 1.1E+02 0.0036 22.8 4.1 29 139-168 135-167 (216)
276 4hjh_A Phosphomannomutase; str 21.6 1.2E+02 0.0042 25.1 5.0 42 126-168 163-208 (481)
277 3c85_A Putative glutathione-re 21.5 1E+02 0.0035 21.3 3.9 29 139-169 41-70 (183)
278 3fho_A ATP-dependent RNA helic 21.3 36 0.0012 28.4 1.6 37 136-173 356-392 (508)
279 1fuu_A Yeast initiation factor 21.0 20 0.0007 28.1 0.0 36 137-173 259-294 (394)
280 1vl6_A Malate oxidoreductase; 20.4 1.3E+02 0.0043 24.7 4.6 33 136-169 191-223 (388)
281 3gl9_A Response regulator; bet 20.4 1E+02 0.0035 19.4 3.5 11 152-162 17-27 (122)
282 2eyq_A TRCF, transcription-rep 20.3 1.4E+02 0.0047 28.0 5.4 47 126-173 801-849 (1151)
No 1
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=99.94 E-value=6.6e-27 Score=160.50 Aligned_cols=94 Identities=20% Similarity=0.356 Sum_probs=83.6
Q ss_pred ceeeCHHHHHHHhh-cCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHH
Q 030411 48 VNYVNAEEAKNLIA-VERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (178)
Q Consensus 48 ~~~Is~~e~~~~l~-~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (178)
++.|+++++.++++ +++++|||||+++||..||||||+|+|+..+.+.
T Consensus 1 ~~~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~------------------------------- 49 (100)
T 3foj_A 1 MESITVTELKEKILDANPVNIVDVRTDQETAMGIIPGAETIPMNSIPDN------------------------------- 49 (100)
T ss_dssp CCEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCEECCGGGGGGC-------------------------------
T ss_pred CCccCHHHHHHHHhcCCCcEEEECCCHHHHhcCcCCCCEECCHHHHHHH-------------------------------
Confidence 35799999999984 5689999999999999999999999999865321
Q ss_pred HHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 127 VQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 127 ~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
...++++++||+||.+|.||..+++.|+..|| +|++|+||+.+|++
T Consensus 50 ----~~~l~~~~~ivvyC~~g~rs~~a~~~L~~~G~-~v~~l~GG~~~W~~ 95 (100)
T 3foj_A 50 ----LNYFNDNETYYIICKAGGRSAQVVQYLEQNGV-NAVNVEGGMDEFGD 95 (100)
T ss_dssp ----GGGSCTTSEEEEECSSSHHHHHHHHHHHTTTC-EEEEETTHHHHHCS
T ss_pred ----HHhCCCCCcEEEEcCCCchHHHHHHHHHHCCC-CEEEecccHHHHHH
Confidence 34467899999999999999999999999999 89999999999976
No 2
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=99.94 E-value=5.9e-27 Score=161.95 Aligned_cols=94 Identities=20% Similarity=0.372 Sum_probs=82.2
Q ss_pred ceeeCHHHHHHHhhc-CCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHH
Q 030411 48 VNYVNAEEAKNLIAV-ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (178)
Q Consensus 48 ~~~Is~~e~~~~l~~-~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (178)
++.||++|+.+++.+ ++++|||||++.||+.||||||+|+|+.++.+.
T Consensus 1 ~k~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~------------------------------- 49 (103)
T 3iwh_A 1 MKSITTDELKNKLLESKPVQIVDVRTDEETAMGYIPNAKLIPMDTIPDN------------------------------- 49 (103)
T ss_dssp CCEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCEECCGGGGGGC-------------------------------
T ss_pred CCCcCHHHHHHHHhCCCCeEEEECCChhHHhcCccCCcccCcccchhhh-------------------------------
Confidence 468999999998764 478999999999999999999999999865321
Q ss_pred HHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 127 VQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 127 ~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
...++++++||+||.+|.||..++..|++.||+++ +|.||+.+|++
T Consensus 50 ----~~~l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~-~l~GG~~~W~~ 95 (103)
T 3iwh_A 50 ----LNSFNKNEIYYIVCAGGVRSAKVVEYLEANGIDAV-NVEGGMHAWGD 95 (103)
T ss_dssp ----GGGCCTTSEEEEECSSSSHHHHHHHHHHTTTCEEE-EETTHHHHHCS
T ss_pred ----hhhhcCCCeEEEECCCCHHHHHHHHHHHHcCCCEE-EecChHHHHHH
Confidence 34568899999999999999999999999999754 79999999986
No 3
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=99.94 E-value=1.7e-26 Score=159.19 Aligned_cols=94 Identities=20% Similarity=0.352 Sum_probs=83.2
Q ss_pred ceeeCHHHHHHHhh-cCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHH
Q 030411 48 VNYVNAEEAKNLIA-VERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (178)
Q Consensus 48 ~~~Is~~e~~~~l~-~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (178)
++.|+++++.+++. +++++|||||+++||..||||||+|+|+..+.+
T Consensus 1 ~~~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~-------------------------------- 48 (103)
T 3eme_A 1 MKSITTDELKNKLLESKPVQIVDVRTDEETAMGYIPNAKLIPMDTIPD-------------------------------- 48 (103)
T ss_dssp CCEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCEECCGGGGGG--------------------------------
T ss_pred CCccCHHHHHHHHhcCCCCEEEECCCHHHHhcCcCCCCEEcCHHHHHH--------------------------------
Confidence 35799999999884 568999999999999999999999999986532
Q ss_pred HHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 127 VQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 127 ~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
....++++++||+||.+|.+|..+++.|...|| +|++|+||+.+|++
T Consensus 49 ---~~~~l~~~~~iv~yC~~g~rs~~a~~~L~~~G~-~v~~l~GG~~~W~~ 95 (103)
T 3eme_A 49 ---NLNSFNKNEIYYIVCAGGVRSAKVVEYLEANGI-DAVNVEGGMHAWGD 95 (103)
T ss_dssp ---CGGGCCTTSEEEEECSSSSHHHHHHHHHHTTTC-EEEEETTHHHHHCS
T ss_pred ---HHHhCCCCCeEEEECCCChHHHHHHHHHHHCCC-CeEEeCCCHHHHHH
Confidence 134467899999999999999999999999999 89999999999975
No 4
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=99.93 E-value=1.7e-26 Score=160.47 Aligned_cols=96 Identities=18% Similarity=0.342 Sum_probs=85.4
Q ss_pred CceeeCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHH
Q 030411 47 DVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (178)
Q Consensus 47 ~~~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (178)
.++.|+++++.+++++++.+|||||++.||..||||||+|+|+..+.
T Consensus 3 ~~~~i~~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~--------------------------------- 49 (108)
T 1gmx_A 3 QFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTLG--------------------------------- 49 (108)
T ss_dssp SCEEECHHHHHHHHHTTCCEEEECSCHHHHHHCEETTCEECCHHHHH---------------------------------
T ss_pred cccccCHHHHHHHHhCCCCEEEEcCCHHHHHhCCCccCEeCCHHHHH---------------------------------
Confidence 46789999999999877899999999999999999999999987431
Q ss_pred HHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 127 VQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 127 ~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
.....++++++||+||.+|.||..+++.|+..||+||++|+||+.+|++
T Consensus 50 --~~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~ 98 (108)
T 1gmx_A 50 --AFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQR 98 (108)
T ss_dssp --HHHHHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHHHHH
T ss_pred --HHHHhcCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHHHHH
Confidence 1234478899999999999999999999999999999999999999964
No 5
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=99.93 E-value=5.1e-26 Score=162.98 Aligned_cols=109 Identities=26% Similarity=0.396 Sum_probs=92.5
Q ss_pred ccCceeeCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCCh
Q 030411 45 RADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNP 124 (178)
Q Consensus 45 ~~~~~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 124 (178)
....+.|+++++.++++ ++++|||||++.||..||||||+|+|+..+.. .....++
T Consensus 14 ~~~~~~is~~e~~~~l~-~~~~lIDvR~~~e~~~ghIpgAinip~~~~~~-----------------------~~~~~~~ 69 (129)
T 1tq1_A 14 SRVPSSVSVTVAHDLLL-AGHRYLDVRTPEEFSQGHACGAINVPYMNRGA-----------------------SGMSKNT 69 (129)
T ss_dssp SCCCEEEEHHHHHHHHH-HTCCEEEESCHHHHHHCCBTTBEECCSCCCST-----------------------TTCCCTT
T ss_pred cCCCcccCHHHHHHHhc-CCCEEEECCCHHHHhcCCCCCcEECcHhhccc-----------------------ccccCCH
Confidence 45678899999999987 56899999999999999999999999865421 1122345
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
++++.....++++++||+||.+|.||..+++.|++.||+||++|+||+.+|++
T Consensus 70 ~~~~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~ 122 (129)
T 1tq1_A 70 DFLEQVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAK 122 (129)
T ss_dssp THHHHHTTTCCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHHHHHh
Confidence 67666666788999999999999999999999999999999999999999964
No 6
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=99.93 E-value=8.3e-26 Score=157.22 Aligned_cols=92 Identities=29% Similarity=0.392 Sum_probs=82.7
Q ss_pred ceeeCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHH
Q 030411 48 VNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFV 127 (178)
Q Consensus 48 ~~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (178)
++.|+++++.+++++ ++|||||++.||..||||||+|+|+.++
T Consensus 3 ~~~is~~el~~~l~~--~~iiDvR~~~e~~~ghIpgA~~ip~~~l----------------------------------- 45 (108)
T 3gk5_A 3 YRSINAADLYENIKA--YTVLDVREPFELIFGSIANSINIPISEL----------------------------------- 45 (108)
T ss_dssp CCEECHHHHHHTTTT--CEEEECSCHHHHTTCBCTTCEECCHHHH-----------------------------------
T ss_pred ccEeCHHHHHHHHcC--CEEEECCCHHHHhcCcCCCCEEcCHHHH-----------------------------------
Confidence 578999999999875 8999999999999999999999999743
Q ss_pred HHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 128 QSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 128 ~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
......++++++||+||.+|.||..+++.|+..|| +|++|+||+.+|++
T Consensus 46 ~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~-~v~~l~GG~~~W~~ 94 (108)
T 3gk5_A 46 REKWKILERDKKYAVICAHGNRSAAAVEFLSQLGL-NIVDVEGGIQSWIE 94 (108)
T ss_dssp HHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTC-CEEEETTHHHHHHH
T ss_pred HHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCC-CEEEEcCcHHHHHH
Confidence 22345578899999999999999999999999999 99999999999974
No 7
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=99.92 E-value=9e-26 Score=153.13 Aligned_cols=92 Identities=28% Similarity=0.382 Sum_probs=77.4
Q ss_pred ceeeCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHH
Q 030411 48 VNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFV 127 (178)
Q Consensus 48 ~~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (178)
++.|+++++.+++++ +.+|||||++.||..||||||+|+|+.++.+.
T Consensus 1 ~~~is~~~l~~~~~~-~~~liDvR~~~e~~~ghi~gAi~ip~~~l~~~-------------------------------- 47 (94)
T 1wv9_A 1 MRKVRPEELPALLEE-GVLVVDVRPADRRSTPLPFAAEWVPLEKIQKG-------------------------------- 47 (94)
T ss_dssp -CEECGGGHHHHHHT-TCEEEECCCC--CCSCCSSCCEECCHHHHTTT--------------------------------
T ss_pred CCcCCHHHHHHHHHC-CCEEEECCCHHHHhcccCCCCEECCHHHHHHH--------------------------------
Confidence 357999999999875 78999999999999999999999999755321
Q ss_pred HHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 128 QSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 128 ~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
...+++ ++||+||.+|.||..+++.|+..||+ |++|+||+.+|++
T Consensus 48 ---~~~l~~-~~ivvyC~~g~rs~~a~~~L~~~G~~-v~~l~GG~~~W~~ 92 (94)
T 1wv9_A 48 ---EHGLPR-RPLLLVCEKGLLSQVAALYLEAEGYE-AMSLEGGLQALTQ 92 (94)
T ss_dssp ---CCCCCS-SCEEEECSSSHHHHHHHHHHHHHTCC-EEEETTGGGCC--
T ss_pred ---HHhCCC-CCEEEEcCCCChHHHHHHHHHHcCCc-EEEEcccHHHHHh
Confidence 233567 89999999999999999999999999 9999999999975
No 8
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=99.92 E-value=7.6e-25 Score=158.47 Aligned_cols=109 Identities=18% Similarity=0.308 Sum_probs=88.5
Q ss_pred ccCceeeCHHHHHHHhhc--CCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCC
Q 030411 45 RADVNYVNAEEAKNLIAV--ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQ 122 (178)
Q Consensus 45 ~~~~~~Is~~e~~~~l~~--~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 122 (178)
...++.|+++++.+++++ ++++|||||++.||..||||||+|+|+..+... ...
T Consensus 19 ~~~~~~is~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~------------------------~~~ 74 (139)
T 3d1p_A 19 VSNIQSYSFEDMKRIVGKHDPNVVLVDVREPSEYSIVHIPASINVPYRSHPDA------------------------FAL 74 (139)
T ss_dssp -CCCEECCHHHHHHHHHHTCTTEEEEECSCHHHHHHCCCTTCEECCTTTCTTG------------------------GGS
T ss_pred CCCcceecHHHHHHHHhCCCCCeEEEECcCHHHHhCCCCCCcEEcCHHHhhhh------------------------ccC
Confidence 346789999999999973 579999999999999999999999999866321 011
Q ss_pred ChHHHHHHHh--cCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 123 NPEFVQSVKS--QFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 123 ~~~~~~~~~~--~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
+++.+..... .++++++||+||.+|.||..++..|+..||+||++|+||+.+|++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~ 131 (139)
T 3d1p_A 75 DPLEFEKQIGIPKPDSAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMNDWVS 131 (139)
T ss_dssp CHHHHHHHHSSCCCCTTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHHHHHH
T ss_pred CHHHHHHHHhccCCCCCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHHHHHH
Confidence 2222222222 357889999999999999999999999999999999999999964
No 9
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=99.92 E-value=6e-25 Score=159.09 Aligned_cols=99 Identities=25% Similarity=0.376 Sum_probs=87.0
Q ss_pred cCceeeCHHHHHHHhh-cCCeEEEeeCChhhhhh-cc--CCCeEEecccccccCCcchhhhhhcccccccccccCCCCCC
Q 030411 46 ADVNYVNAEEAKNLIA-VERYAVLDVRDNSQYNR-AH--IKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTK 121 (178)
Q Consensus 46 ~~~~~Is~~e~~~~l~-~~~~~lIDvR~~~e~~~-gh--IpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 121 (178)
..++.|+++++.++++ +++++|||||++.||.. || ||||+|+|+..+..
T Consensus 20 ~~~~~is~~el~~~l~~~~~~~liDVR~~~E~~~~gh~~IpgAinip~~~l~~--------------------------- 72 (137)
T 1qxn_A 20 ADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEP--------------------------- 72 (137)
T ss_dssp HSSEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCSSEEECCTTTSHH---------------------------
T ss_pred ccCcccCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCcCCCCCEEcchHHhhh---------------------------
Confidence 4678899999999998 66799999999999999 99 99999999975421
Q ss_pred CChHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 122 QNPEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
......++++++||+||.+|.||..+++.|+..||+||++|+||+.+|++
T Consensus 73 ------~~~~~~l~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~W~~ 122 (137)
T 1qxn_A 73 ------LLAKSGLDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLE 122 (137)
T ss_dssp ------HHHHHCCCTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHHHHHH
T ss_pred ------HHhhccCCCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHHHHHH
Confidence 01234578899999999999999999999999999999999999999964
No 10
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=99.91 E-value=3.6e-25 Score=153.43 Aligned_cols=90 Identities=27% Similarity=0.399 Sum_probs=71.5
Q ss_pred HHHHHHhhc--CCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHHHHH
Q 030411 54 EEAKNLIAV--ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVK 131 (178)
Q Consensus 54 ~e~~~~l~~--~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (178)
+|+.++++. ++++|||||++.||..||||||+|+|+.++ .+...
T Consensus 1 eel~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l----------------------------------~~~~~ 46 (106)
T 3hix_A 1 MVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDL----------------------------------VDRAS 46 (106)
T ss_dssp ------------CCEEEECSCHHHHHTCEETTCEECCGGGH----------------------------------HHHHH
T ss_pred ChHHHHHHcCCCCeEEEECCCHHHHhcCcCCCCEeCCHHHH----------------------------------HHHHH
Confidence 356677763 468999999999999999999999999743 22233
Q ss_pred hcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 132 SQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 132 ~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
..++++++||+||.+|.+|..+++.|+..||+||++|+||+.+|++
T Consensus 47 ~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~ 92 (106)
T 3hix_A 47 SSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKA 92 (106)
T ss_dssp HHSCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHHHHH
T ss_pred hcCCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHHHHH
Confidence 5578899999999999999999999999999999999999999975
No 11
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=99.91 E-value=1.6e-24 Score=156.57 Aligned_cols=105 Identities=24% Similarity=0.383 Sum_probs=86.1
Q ss_pred cCceeeCHHHHHHHhh--cCCeEEEeeCChhhhhh-ccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCC
Q 030411 46 ADVNYVNAEEAKNLIA--VERYAVLDVRDNSQYNR-AHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQ 122 (178)
Q Consensus 46 ~~~~~Is~~e~~~~l~--~~~~~lIDvR~~~e~~~-ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 122 (178)
..+..|+++++.++++ +++++|||||++.||.. ||||||+|+|+..+....+ .. .
T Consensus 19 ~~~~~is~~~l~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA~~ip~~~l~~~~~-----~~------------~----- 76 (139)
T 2hhg_A 19 SSIETLTTADAIALHKSGASDVVIVDIRDPREIERDGKIPGSFSCTRGMLEFWID-----PQ------------S----- 76 (139)
T ss_dssp TTSEEECHHHHHHHHHTTCTTEEEEECSCHHHHHHHCCCTTCEECCGGGHHHHHC-----TT------------S-----
T ss_pred HhcCccCHHHHHHHHhccCCCeEEEECCCHHHHHhCCCCCCeEECChHHHHHhcC-----cc------------c-----
Confidence 5678999999999998 56899999999999999 9999999999975532100 00 0
Q ss_pred ChHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 123 NPEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 123 ~~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
+. ....++++++||+||.+|.||..+++.|+..||+||++|+||+.+|++
T Consensus 77 -~~----~~~~~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~ 126 (139)
T 2hhg_A 77 -PY----AKPIFQEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGAWRD 126 (139)
T ss_dssp -TT----CCGGGGSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHHHHHH
T ss_pred -hh----hhccCCCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHHHHHH
Confidence 00 012356889999999999999999999999999999999999999964
No 12
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=99.91 E-value=7.3e-26 Score=162.03 Aligned_cols=124 Identities=22% Similarity=0.466 Sum_probs=84.6
Q ss_pred CceeeCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCC-hH
Q 030411 47 DVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN-PE 125 (178)
Q Consensus 47 ~~~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~ 125 (178)
.++.|+++++.+ +++++|||||++.||..||||||+|+|+..+......+++....+. ..+...+.....++ ++
T Consensus 3 ~~~~i~~~el~~---~~~~~iiDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 77 (134)
T 3g5j_A 3 AMSVIKIEKALK---LDKVIFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVGTIYKMQGK--HEAIQKGFDYVSYKLKD 77 (134)
T ss_dssp --CEECHHHHTT---CTTEEEEECSCHHHHHHCCCTTCEECCSSCHHHHHHHHHHHHHHCH--HHHHHHHHHHHGGGHHH
T ss_pred CccccCHHHHHh---cCCcEEEEcCCHHHHhcCCCCCCEEcCccchhhhhcccceeeecCh--hHHHhcccccccccHHH
Confidence 467899999876 5689999999999999999999999999765432222222211100 00000011111111 12
Q ss_pred HHHHHHhcCCCC-CeEEEEc-CCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 126 FVQSVKSQFSPE-SKLLVVC-QEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 126 ~~~~~~~~~~~~-~~iviyC-~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
+.. ....++++ ++||+|| .+|.||..+++.|+..|| ||++|+||+.+|++
T Consensus 78 ~~~-~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~-~v~~l~GG~~~W~~ 129 (134)
T 3g5j_A 78 IYL-QAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGV-NVYQLEGGYKAYRN 129 (134)
T ss_dssp HHH-HHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTC-CCEEETTHHHHHHH
T ss_pred HHH-HHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCC-ceEEEeCcHHHHHH
Confidence 222 23345677 9999999 589999999999999999 89999999999974
No 13
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=99.91 E-value=1.5e-24 Score=157.83 Aligned_cols=93 Identities=27% Similarity=0.406 Sum_probs=82.2
Q ss_pred eCHHHHHHHhhcC--CeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHH
Q 030411 51 VNAEEAKNLIAVE--RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQ 128 (178)
Q Consensus 51 Is~~e~~~~l~~~--~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (178)
|+++++.++++++ +++|||||++.||..||||||+|+|+..+ .+
T Consensus 2 Is~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l----------------------------------~~ 47 (141)
T 3ilm_A 2 SDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDL----------------------------------VD 47 (141)
T ss_dssp CCHHHHHHHHHHSCSCEEEEECSCHHHHHHCEETTCEECCGGGH----------------------------------HH
T ss_pred CCHHHHHHHHhcCCCCEEEEECCCHHHHhCCCCCCCEEcCHHHH----------------------------------HH
Confidence 7999999999743 58999999999999999999999999743 22
Q ss_pred HHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 129 SVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 129 ~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
.....++++++||+||.+|.+|..+++.|+..||+||++|+||+.+|++
T Consensus 48 ~~~~~l~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~ 96 (141)
T 3ilm_A 48 RASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKA 96 (141)
T ss_dssp HHHTTSCTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHHHHHH
T ss_pred HHHhcCCCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHHHHHH
Confidence 2234578899999999999999999999999999999999999999974
No 14
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=99.90 E-value=2.1e-24 Score=158.83 Aligned_cols=108 Identities=18% Similarity=0.300 Sum_probs=88.0
Q ss_pred ccceeeccCceeeCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCC
Q 030411 39 RRNLKIRADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLP 118 (178)
Q Consensus 39 ~~~~~~~~~~~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 118 (178)
.........++.|+++++.+++++++++|||||+++||..||||||+|+|+..+.+
T Consensus 18 ~~~~~~~~~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpgAinip~~~l~~------------------------ 73 (152)
T 1t3k_A 18 GSHMAMARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDD------------------------ 73 (152)
T ss_dssp ---CCCCSSSEEECTTTTTTCCCCTTEEEEEESCSHHHHSSCCCSSEEECCSSSST------------------------
T ss_pred cchhhhcCCCceECHHHHHHHhcCCCEEEEECCChhhccCccCCCCEECCHHHHHH------------------------
Confidence 34444556788999999999887778999999999999999999999999986532
Q ss_pred CCCCChHHHHHHHhcCCCCCeEEEEcC-CChhHHHHHHHHHH--------cCCceEEEeccccccccC
Q 030411 119 FTKQNPEFVQSVKSQFSPESKLLVVCQ-EGLRSAAAANKLEE--------AGFQNIACITSGLQTVKP 177 (178)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~iviyC~-~g~rs~~aa~~L~~--------~G~~~v~~l~GG~~~w~~ 177 (178)
.++.....++++++||+||+ +|.||..++..|.+ .||+||++|+||+.+|++
T Consensus 74 -------~~~~l~~~~~~~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~~W~~ 134 (152)
T 1t3k_A 74 -------KISHLVQNVKDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEA 134 (152)
T ss_dssp -------THHHHHHTCCSCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHHHHH
T ss_pred -------HHHHHHHhcCCCCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHHHHHH
Confidence 22333444678899999999 99999999988753 899999999999999964
No 15
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=99.90 E-value=4.8e-24 Score=151.68 Aligned_cols=93 Identities=22% Similarity=0.260 Sum_probs=81.8
Q ss_pred eeeCHHHHHHHhhcC--CeEEEeeCChhhh-hhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChH
Q 030411 49 NYVNAEEAKNLIAVE--RYAVLDVRDNSQY-NRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPE 125 (178)
Q Consensus 49 ~~Is~~e~~~~l~~~--~~~lIDvR~~~e~-~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 125 (178)
..|+++++.++++++ +++|||||++.|| ..||||||+|+|+.++.
T Consensus 15 ~~is~~el~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA~nip~~~l~-------------------------------- 62 (124)
T 3flh_A 15 LYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPAKDLA-------------------------------- 62 (124)
T ss_dssp TEECHHHHHHHHHHTCCCEEEEECCCSCHHHHCCEETTCEECCHHHHH--------------------------------
T ss_pred ceecHHHHHHHHHcCCCCEEEEECCCHHHHHhcCcCCCCEECCHHHHH--------------------------------
Confidence 569999999999764 4999999999998 99999999999997432
Q ss_pred HHHHHHhcCCCCCeEEEEcCCChh--HHHHHHHHHHcCCceEEEeccccccccC
Q 030411 126 FVQSVKSQFSPESKLLVVCQEGLR--SAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 126 ~~~~~~~~~~~~~~iviyC~~g~r--s~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
.....++++++||+||.+|.+ |..+++.|+..||+ |++|+||+.+|+.
T Consensus 63 ---~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~-v~~l~GG~~~W~~ 112 (124)
T 3flh_A 63 ---TRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFE-AYELAGALEGWKG 112 (124)
T ss_dssp ---HHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCE-EEEETTHHHHHHH
T ss_pred ---HHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCe-EEEeCCcHHHHHH
Confidence 234567889999999999998 89999999999996 9999999999974
No 16
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=99.89 E-value=1.5e-23 Score=152.92 Aligned_cols=94 Identities=22% Similarity=0.331 Sum_probs=82.1
Q ss_pred eeeCHHHHHHHhhcC--CeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHH
Q 030411 49 NYVNAEEAKNLIAVE--RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (178)
Q Consensus 49 ~~Is~~e~~~~l~~~--~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (178)
..|+++++.++++++ +++|||||++.||..||||||+|+|+..+...
T Consensus 16 ~~is~~el~~~l~~~~~~~~liDvR~~~ey~~ghIpgAinip~~~l~~~------------------------------- 64 (144)
T 3nhv_A 16 YETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINED------------------------------- 64 (144)
T ss_dssp TEEEHHHHHHHHHTTCCSEEEEECSCHHHHHHCBCTTCEECCGGGCSTT-------------------------------
T ss_pred cccCHHHHHHHHHcCCCCEEEEECcCHHHHhcCCCCCCEECCHHHHhHH-------------------------------
Confidence 469999999999765 79999999999999999999999999865421
Q ss_pred HHHHHhcCCCCCeEEEEcCCC--hhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 127 VQSVKSQFSPESKLLVVCQEG--LRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 127 ~~~~~~~~~~~~~iviyC~~g--~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
....++++++||+||.+| .+|..+++.|+..|| +|++|+||+.+|++
T Consensus 65 ---~~~~l~~~~~ivvyC~~g~~~rs~~aa~~L~~~G~-~v~~l~GG~~~W~~ 113 (144)
T 3nhv_A 65 ---TTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGF-RVKELIGGIEYWRK 113 (144)
T ss_dssp ---TTTTCCTTSEEEEECSCTTCCHHHHHHHHHHHTTC-EEEEEESHHHHHHH
T ss_pred ---HHhhCCCCCeEEEEECCCCccHHHHHHHHHHHCCC-eEEEeCCcHHHHHH
Confidence 124467899999999998 799999999999999 69999999999964
No 17
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=99.89 E-value=8.8e-24 Score=150.05 Aligned_cols=109 Identities=20% Similarity=0.245 Sum_probs=81.6
Q ss_pred eeeCHHHHHHHhhcC-CeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHH
Q 030411 49 NYVNAEEAKNLIAVE-RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFV 127 (178)
Q Consensus 49 ~~Is~~e~~~~l~~~-~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (178)
++|+++++.++++++ +++|||||++.||..||||||+|+|+..+..... .+... -.+.+
T Consensus 1 ~~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~--~~~~~------------------~~~~l 60 (127)
T 3i2v_A 1 SRVSVTDYKRLLDSGAFHLLLDVRPQVEVDICRLPHALHIPLKHLERRDA--ESLKL------------------LKEAI 60 (127)
T ss_dssp CEECHHHHHHHHHHTCCCEEEECSCHHHHHHCCCTTSEECCHHHHHTTCH--HHHHH------------------HHHHH
T ss_pred CCCCHHHHHHHHhCCCCeEEEECCCHHHhhheecCCceeCChHHHhhhhh--hhHHH------------------HHHHH
Confidence 369999999999765 5999999999999999999999999986643211 00000 00011
Q ss_pred HHHHh--cCCCCCeEEEEcCCChhHHHHHHHHHHc------CCceEEEeccccccccC
Q 030411 128 QSVKS--QFSPESKLLVVCQEGLRSAAAANKLEEA------GFQNIACITSGLQTVKP 177 (178)
Q Consensus 128 ~~~~~--~~~~~~~iviyC~~g~rs~~aa~~L~~~------G~~~v~~l~GG~~~w~~ 177 (178)
..... .++++++||+||.+|.+|..+++.|.+. ||.+|++|+||+.+|++
T Consensus 61 ~~~~~~~~~~~~~~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~~W~~ 118 (127)
T 3i2v_A 61 WEEKQGTQEGAAVPIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMAWAA 118 (127)
T ss_dssp HHHHTTC---CCEEEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHHHHHH
T ss_pred hhhcccccCCCCCeEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHHHHHH
Confidence 11111 1345669999999999999999999999 68999999999999964
No 18
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=99.89 E-value=4.7e-23 Score=150.71 Aligned_cols=103 Identities=18% Similarity=0.277 Sum_probs=80.4
Q ss_pred CceeeCHHHHHHHhhc-CCeEEEeeCChhhhhh-ccC------CCeEEecccccccCCcchhhhhhcccccccccccCCC
Q 030411 47 DVNYVNAEEAKNLIAV-ERYAVLDVRDNSQYNR-AHI------KSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLP 118 (178)
Q Consensus 47 ~~~~Is~~e~~~~l~~-~~~~lIDvR~~~e~~~-ghI------pgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 118 (178)
.++.|+++++.+++++ ++++|||||++.||.. ||| |||+|+|+.. .+.
T Consensus 3 ~~~~is~~el~~~l~~~~~~~liDVR~~~e~~~~ghi~~~g~~pgAv~ip~~~-~~~----------------------- 58 (148)
T 2fsx_A 3 YAGDITPLQAWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWAT-SDG----------------------- 58 (148)
T ss_dssp CSEEECHHHHHHHHHHCTTCEEEECSCHHHHHHTCEECCGGGTCCCEECCSBC-TTS-----------------------
T ss_pred ccccCCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCCccccCCCCcEEeeeec-ccc-----------------------
Confidence 3567999999999975 5899999999999997 999 9999999975 110
Q ss_pred CCCCChHHHHHHHhc-----CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccc
Q 030411 119 FTKQNPEFVQSVKSQ-----FSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTV 175 (178)
Q Consensus 119 ~~~~~~~~~~~~~~~-----~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w 175 (178)
..++++.+.+... ++++++||+||.+|.||..+++.|+..||+||++|+||+.+|
T Consensus 59 --~~~~~~~~~l~~~l~~~~~~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~w 118 (148)
T 2fsx_A 59 --THNDNFLAELRDRIPADADQHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFEGH 118 (148)
T ss_dssp --CBCTTHHHHHHHHCC-------CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTTCC
T ss_pred --ccCHHHHHHHHHHHhhccCCCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChhhh
Confidence 0112233333322 478899999999999999999999999999999999999655
No 19
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=99.89 E-value=1.3e-23 Score=146.55 Aligned_cols=91 Identities=19% Similarity=0.365 Sum_probs=76.0
Q ss_pred eeeCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHH
Q 030411 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQ 128 (178)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (178)
..|+++++ ++++++|||||++.||..||||||+|+|+.++.. .+.
T Consensus 5 ~~is~~el----~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~-------------------------------~~~ 49 (110)
T 2k0z_A 5 YAISLEEV----NFNDFIVVDVRELDEYEELHLPNATLISVNDQEK-------------------------------LAD 49 (110)
T ss_dssp TEEETTTC----CGGGSEEEEEECHHHHHHSBCTTEEEEETTCHHH-------------------------------HHH
T ss_pred eeeCHHHh----ccCCeEEEECCCHHHHhcCcCCCCEEcCHHHHHH-------------------------------HHH
Confidence 45777765 3457899999999999999999999999975421 111
Q ss_pred HHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 129 SVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 129 ~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
...++++++||+||.+|.||..+++.|+..||++ ++|+||+.+|++
T Consensus 50 --~~~~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~-~~l~GG~~~W~~ 95 (110)
T 2k0z_A 50 --FLSQHKDKKVLLHCRAGRRALDAAKSMHELGYTP-YYLEGNVYDFEK 95 (110)
T ss_dssp --HHHSCSSSCEEEECSSSHHHHHHHHHHHHTTCCC-EEEESCGGGTTT
T ss_pred --hcccCCCCEEEEEeCCCchHHHHHHHHHHCCCCE-EEecCCHHHHHH
Confidence 1136789999999999999999999999999999 999999999975
No 20
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=99.89 E-value=3.1e-23 Score=165.06 Aligned_cols=130 Identities=16% Similarity=0.246 Sum_probs=99.3
Q ss_pred ccccccceeeeeecCCcccCCCcccccceeeccCceeeCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccccc
Q 030411 14 RSKLRTTWLQFETHPGRKVSGKSICRRNLKIRADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIEN 93 (178)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~ 93 (178)
..+|.+..+++.. .+++-+.+. ........+.|+++++.+++++++++|||||++.||+.||||||+|+|+..+.
T Consensus 92 ~~~F~~l~vk~k~---eiV~~g~~~--~dp~~~~~~~Is~~el~~ll~~~~~vlIDVR~~~Ey~~GHIpGAiniP~~~~~ 166 (265)
T 4f67_A 92 KNPFDKAKVKLRK---EIVTMGVQK--VDPSYNAGTYLSPEEWHQFIQDPNVILLDTRNDYEYELGTFKNAINPDIENFR 166 (265)
T ss_dssp SCCCSSEEEEECS---SSSCCCCTT--CCCTTCTTCEECHHHHHHHTTCTTSEEEECSCHHHHHHEEETTCBCCCCSSGG
T ss_pred CCCcccccccccc---ccccCCCCC--cCcccCCCceECHHHHHHHhcCCCeEEEEeCCchHhhcCcCCCCEeCCHHHHH
Confidence 3466666666655 344433221 11224457889999999999888999999999999999999999999998653
Q ss_pred cCCcchhhhhhcccccccccccCCCCCCCChHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 94 QDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
+. ++.+..... .+++++||+||.+|.||..+++.|+..||+||++|+||+.
T Consensus 167 ~~----------------------------~~~l~~~l~-~~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~ 217 (265)
T 4f67_A 167 EF----------------------------PDYVQRNLI-DKKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGIL 217 (265)
T ss_dssp GH----------------------------HHHHHHHTG-GGTTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred hh----------------------------HHHHHHhhh-hCCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 20 112211111 2678999999999999999999999999999999999999
Q ss_pred cccC
Q 030411 174 TVKP 177 (178)
Q Consensus 174 ~w~~ 177 (178)
+|.+
T Consensus 218 aW~~ 221 (265)
T 4f67_A 218 NYLE 221 (265)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9964
No 21
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=99.88 E-value=4.5e-23 Score=137.20 Aligned_cols=78 Identities=23% Similarity=0.385 Sum_probs=67.9
Q ss_pred CeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHHHHHhc--CCCCCeEE
Q 030411 64 RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQ--FSPESKLL 141 (178)
Q Consensus 64 ~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iv 141 (178)
+++|||||++.||+.||||||+|+|+.++. ..... .+++++||
T Consensus 1 ~~~liDvR~~~e~~~ghIpgA~~ip~~~l~-----------------------------------~~~~~l~~~~~~~iv 45 (85)
T 2jtq_A 1 AEHWIDVRVPEQYQQEHVQGAINIPLKEVK-----------------------------------ERIATAVPDKNDTVK 45 (85)
T ss_dssp CEEEEECSCHHHHTTEEETTCEECCHHHHH-----------------------------------HHHHHHCCCTTSEEE
T ss_pred CCEEEECCCHHHHHhCCCCCCEEcCHHHHH-----------------------------------HHHHHhCCCCCCcEE
Confidence 468999999999999999999999997442 11222 37889999
Q ss_pred EEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 142 VVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 142 iyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
+||.+|.+|..+++.|++.||++|+++ ||+.+|..
T Consensus 46 v~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~~w~~ 80 (85)
T 2jtq_A 46 VYCNAGRQSGQAKEILSEMGYTHVENA-GGLKDIAM 80 (85)
T ss_dssp EEESSSHHHHHHHHHHHHTTCSSEEEE-EETTTCCS
T ss_pred EEcCCCchHHHHHHHHHHcCCCCEEec-cCHHHHhc
Confidence 999999999999999999999999999 99999974
No 22
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=99.88 E-value=1.6e-22 Score=145.63 Aligned_cols=102 Identities=17% Similarity=0.230 Sum_probs=83.5
Q ss_pred CceeeCHHHHHHHhh-cCCeEEEeeCChhhhhh-ccC------CCeEEecccccccCCcchhhhhhcccccccccccCCC
Q 030411 47 DVNYVNAEEAKNLIA-VERYAVLDVRDNSQYNR-AHI------KSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLP 118 (178)
Q Consensus 47 ~~~~Is~~e~~~~l~-~~~~~lIDvR~~~e~~~-ghI------pgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 118 (178)
....|+++++.++++ +++++|||||+++||+. +|+ |||+|+|+..+.
T Consensus 3 ~~~~is~~e~~~~l~~~~~~~liDVR~~~E~~~~~~~~~~g~~~ga~~ip~~~~~------------------------- 57 (134)
T 1vee_A 3 SGSSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGED------------------------- 57 (134)
T ss_dssp CSCBCCHHHHHHHHHHCTTEEEEECSCHHHHHHTCEECCTTTSCCCEECCCCGGG-------------------------
T ss_pred CCCccCHHHHHHHHHhCCCeEEEEcCCHHHHhhcCCCcccccCCceEEeeccccc-------------------------
Confidence 456799999999987 46899999999999986 444 799999986431
Q ss_pred CCCCChHHHHHHHhcC--CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEecccc---ccccC
Q 030411 119 FTKQNPEFVQSVKSQF--SPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGL---QTVKP 177 (178)
Q Consensus 119 ~~~~~~~~~~~~~~~~--~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~---~~w~~ 177 (178)
+++|.+.+...+ +++++||+||.+|.||..++..|+..||+||++|.||+ .+|++
T Consensus 58 ----~~~~~~~l~~~~~~~~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~~~~~W~~ 117 (134)
T 1vee_A 58 ----KPGFLKKLSLKFKDPENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLN 117 (134)
T ss_dssp ----HHHHHHHHHTTCSCGGGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTTSTTSSGG
T ss_pred ----ChhHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCccCCcchhh
Confidence 123444444433 67899999999999999999999999999999999999 78975
No 23
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=99.87 E-value=3.6e-22 Score=158.93 Aligned_cols=111 Identities=16% Similarity=0.175 Sum_probs=92.5
Q ss_pred eeeCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHH
Q 030411 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQ 128 (178)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (178)
..|+++++.+++++++++|||||++.||..||||||+|+|+..+.... ...+.+.+..+.+.
T Consensus 9 ~~is~~~l~~~l~~~~~~iiDvR~~~ey~~ghIpgA~~ip~~~l~~~~------------------~~~~~~~~~~~~~~ 70 (271)
T 1e0c_A 9 LVIEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQ------------------PPAPGLQPPREQLE 70 (271)
T ss_dssp SEECHHHHHTTTTCTTEEEEECSCHHHHHHCBSTTCEECCGGGGSCCC------------------TTCTTSCCCHHHHH
T ss_pred ceeeHHHHHHhccCCCeEEEEcCCcchhhhCcCCCCEECCHHHhccCC------------------CCCCCCCCCHHHHH
Confidence 479999999999777899999999999999999999999998764321 11344555555555
Q ss_pred HHHhc--CCCCCeEEEEcCCCh-hHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 129 SVKSQ--FSPESKLLVVCQEGL-RSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 129 ~~~~~--~~~~~~iviyC~~g~-rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
..+.. ++++++|||||.+|. +|..+++.|+..||++|++|+||+.+|++
T Consensus 71 ~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~~~w~~ 122 (271)
T 1e0c_A 71 SLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLA 122 (271)
T ss_dssp HHHHHHTCCTTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHHHHHHH
T ss_pred HHHHHcCCCCCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCHHHHHH
Confidence 54554 688999999999887 99999999999999999999999999964
No 24
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=99.86 E-value=1.3e-21 Score=156.50 Aligned_cols=111 Identities=18% Similarity=0.232 Sum_probs=91.0
Q ss_pred eeeCHHHHHHHhhcCCeEEEeeC----------ChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCC
Q 030411 49 NYVNAEEAKNLIAVERYAVLDVR----------DNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLP 118 (178)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDvR----------~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 118 (178)
..|+++++.+++++++++||||| ++.||..||||||+|+|+..+..... ..+
T Consensus 4 ~~is~~~l~~~l~~~~~~iiDvR~~~~~~~~~~~~~e~~~ghIpgAi~ip~~~l~~~~~------------------~~~ 65 (280)
T 1urh_A 4 WFVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTS------------------PLP 65 (280)
T ss_dssp CEECHHHHHTTTTCTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCSSS------------------SSS
T ss_pred ceeeHHHHHHhcCCCCeEEEEeeccCCcccccchhhhhhhCcCCCCEECCHHHhcCCCC------------------CCC
Confidence 57999999999987789999999 78899999999999999986543211 133
Q ss_pred CCCCChHHHHHHHhc--CCCCCeEEEEcCCChh-HHHHHHHHHHcCCceEEEeccccccccC
Q 030411 119 FTKQNPEFVQSVKSQ--FSPESKLLVVCQEGLR-SAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 119 ~~~~~~~~~~~~~~~--~~~~~~iviyC~~g~r-s~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
.+.+..+.+...+.. ++++++||+||.+|.+ |..+++.|+..||+||++|+||+.+|++
T Consensus 66 ~~~~~~~~~~~~~~~~gi~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~~W~~ 127 (280)
T 1urh_A 66 HMLPRPETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGWQR 127 (280)
T ss_dssp SCCCCHHHHHHHHHHTTCCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHH
Confidence 445554444444444 6889999999999998 9999999999999999999999999964
No 25
>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens}
Probab=99.85 E-value=1.7e-21 Score=151.02 Aligned_cols=100 Identities=19% Similarity=0.341 Sum_probs=79.4
Q ss_pred ccCceeeCHHHHHHHhhcC------CeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCC
Q 030411 45 RADVNYVNAEEAKNLIAVE------RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLP 118 (178)
Q Consensus 45 ~~~~~~Is~~e~~~~l~~~------~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 118 (178)
...++.|+++++.++++++ +++|||||++.||+.||||||+|+|+.+.
T Consensus 53 ~~~~~~Is~~eL~~~l~~~~~~~~~~~~lIDVR~~~Ey~~GHIpGAinIP~~~~-------------------------- 106 (216)
T 3op3_A 53 HQDLKYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGGHIQGALNLYSQEE-------------------------- 106 (216)
T ss_dssp CSSSEEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTSEETTCEECCSHHH--------------------------
T ss_pred CCCCCEeCHHHHHHHHhCCCccccCCEEEEEeCcHHHHhcCCccCCEECChHHH--------------------------
Confidence 3468899999999999865 68999999999999999999999998631
Q ss_pred CCCCChHHHHHHHh--c--CCCCC--eEEEEcC-CChhHHHHHHHHHHc----------CCceEEEeccccccccC
Q 030411 119 FTKQNPEFVQSVKS--Q--FSPES--KLLVVCQ-EGLRSAAAANKLEEA----------GFQNIACITSGLQTVKP 177 (178)
Q Consensus 119 ~~~~~~~~~~~~~~--~--~~~~~--~iviyC~-~g~rs~~aa~~L~~~----------G~~~v~~l~GG~~~w~~ 177 (178)
+.+.... . .++++ +||+||. +|.||..++..|+.. ||++|++|+||+.+|++
T Consensus 107 -------l~~~l~~~~~~~~~~~k~~~VVvyC~~SG~Rs~~aa~~L~~~~~~~~~y~~lGf~~V~~L~GG~~aW~~ 175 (216)
T 3op3_A 107 -------LFNFFLKKPIVPLDTQKRIIIVFHCEFSSERGPRMCRCLREEDRSLNQYPALYYPELYILKGGYRDFFP 175 (216)
T ss_dssp -------HHHHHTSSCCCCSSTTSEEEEEEECCC--CCHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTT
T ss_pred -------HHHHHhhccccccccCCCCEEEEEeCCCChHHHHHHHHHHHcCcccccccccCCCcEEEECCcHHHHHH
Confidence 1011111 1 12344 4999999 999999999999987 89999999999999975
No 26
>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A
Probab=99.85 E-value=7.7e-22 Score=144.70 Aligned_cols=110 Identities=17% Similarity=0.241 Sum_probs=78.5
Q ss_pred eeeCHHHHHHHhhc--CCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHH
Q 030411 49 NYVNAEEAKNLIAV--ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (178)
Q Consensus 49 ~~Is~~e~~~~l~~--~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (178)
+.|+++++.+++++ ++++|||||++.||..||||||+|+|+..+... .+ .. + ......+
T Consensus 4 ~~Is~~~l~~~l~~~~~~~~iiDvR~~~ey~~gHIpgAinip~~~l~~~----~~-~~-----------~---~~~~~~l 64 (153)
T 2vsw_A 4 TQIVTERLVALLESGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKR----RL-QQ-----------D---KVLITEL 64 (153)
T ss_dssp EEECHHHHHHHHTSTTCCEEEEECSCHHHHHHCEETTCEECCCCHHHHH----HH-HT-----------T---SSCHHHH
T ss_pred ccccHHHHHHHHhcCCCCEEEEECCCHHHhccCccCCCeeeChHHHHHh----hh-hc-----------C---CcCHHHh
Confidence 57999999999973 578999999999999999999999999754110 00 00 0 0000011
Q ss_pred H-HHHHh--cCCCCCeEEEEcCCChhHHHH------HHHHHHc--CCceEEEeccccccccC
Q 030411 127 V-QSVKS--QFSPESKLLVVCQEGLRSAAA------ANKLEEA--GFQNIACITSGLQTVKP 177 (178)
Q Consensus 127 ~-~~~~~--~~~~~~~iviyC~~g~rs~~a------a~~L~~~--G~~~v~~l~GG~~~w~~ 177 (178)
+ ....+ .++++++||+||.+|.++..+ ++.|..+ ||++|++|+||+.+|++
T Consensus 65 l~~~~~~~~~~~~~~~iVvyc~~g~~s~~a~~~~~~~~~L~~l~~G~~~v~~L~GG~~~W~~ 126 (153)
T 2vsw_A 65 IQHSAKHKVDIDCSQKVVVYDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFAEFSR 126 (153)
T ss_dssp HHHSCSSCCCCCTTSEEEEECSSCCCGGGSCTTSHHHHHHHHHHHHCSCEEEETTHHHHHHH
T ss_pred cCchhhhhhccCCCCeEEEEeCCCCcccccccchHHHHHHHHHHhCCCcEEEEeChHHHHHH
Confidence 1 00011 246789999999999887665 4677743 99999999999999964
No 27
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=99.85 E-value=2.4e-21 Score=154.14 Aligned_cols=108 Identities=11% Similarity=0.195 Sum_probs=87.6
Q ss_pred eeeCHHHHHHHhhcCCeEEEeeCChhhhh--------hccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCC
Q 030411 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYN--------RAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFT 120 (178)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDvR~~~e~~--------~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 120 (178)
..|+++++.+++++++.+|||||++.||. .||||||+|+|+..+.+... ...
T Consensus 147 ~~i~~~~l~~~l~~~~~~liDvR~~~e~~g~~~~~~~~ghIpgA~~ip~~~~~~~~~--------------------~~~ 206 (271)
T 1e0c_A 147 PTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSR--------------------ALR 206 (271)
T ss_dssp TBCCHHHHHHHTTCTTEEEEECSCHHHHTTSSCCSSSCSBCTTCEECCGGGGEEGGG--------------------TTE
T ss_pred ccccHHHHHHHhcCCCcEEEEcCChhhcCCccCCCCcCCcCCCceeccHHHhCCCCC--------------------CCC
Confidence 46899999999987789999999999999 89999999999987643110 000
Q ss_pred CCChHHHHHHHh-cCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 121 KQNPEFVQSVKS-QFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 121 ~~~~~~~~~~~~-~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
..+++.+.+.. .++++++||+||.+|.||..++..|+..||+||++|+||+.+|+.
T Consensus 207 -~~~~l~~~~~~~~~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~ 263 (271)
T 1e0c_A 207 -IRTDIAGRLEELGITPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGN 263 (271)
T ss_dssp -ECTTHHHHHHHTTCCTTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHHHHTT
T ss_pred -CHHHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcHHHHhc
Confidence 11233333222 478999999999999999999999999999999999999999975
No 28
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1
Probab=99.85 E-value=1.5e-21 Score=144.35 Aligned_cols=101 Identities=17% Similarity=0.363 Sum_probs=80.6
Q ss_pred cCceeeCHHHHHHHhhc------CCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCC
Q 030411 46 ADVNYVNAEEAKNLIAV------ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPF 119 (178)
Q Consensus 46 ~~~~~Is~~e~~~~l~~------~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 119 (178)
..++.|+++++.+++++ ++++|||||++.||..||||||+|+|+..+...
T Consensus 20 ~~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~~~~~------------------------ 75 (161)
T 1c25_A 20 QDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEVED------------------------ 75 (161)
T ss_dssp TTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHH------------------------
T ss_pred CCcceeCHHHHHHHHhccccccCCCeEEEECCChHHccCCcccCcEeCChhHHHHH------------------------
Confidence 46788999999999975 378999999999999999999999999743210
Q ss_pred CCCChHHHHHHHhcC-CCCCeE--EEEcC-CChhHHHHHHHHHH----------cCCceEEEeccccccccC
Q 030411 120 TKQNPEFVQSVKSQF-SPESKL--LVVCQ-EGLRSAAAANKLEE----------AGFQNIACITSGLQTVKP 177 (178)
Q Consensus 120 ~~~~~~~~~~~~~~~-~~~~~i--viyC~-~g~rs~~aa~~L~~----------~G~~~v~~l~GG~~~w~~ 177 (178)
+... ...+ +++++| |+||. +|.||..++..|++ .||++|++|+||+.+|++
T Consensus 76 ------~~~~-~~~~~~~~~~ivvv~yC~~sg~rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~~W~~ 140 (161)
T 1c25_A 76 ------FLLK-KPIVPTDGKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFM 140 (161)
T ss_dssp ------HTTT-SCCCCCTTSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHH
T ss_pred ------HHhh-hhhccCCCCCeEEEEEcCCCCcchHHHHHHHHHHHHhhhhccccCCceEEEEcCCHHHHHH
Confidence 0000 0112 467775 67899 99999999999986 499999999999999964
No 29
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=99.85 E-value=4.5e-21 Score=153.34 Aligned_cols=106 Identities=14% Similarity=0.214 Sum_probs=85.3
Q ss_pred eeeCHHHHHHHhhcCCeEEEeeCChhhh-----------hhccCCCeEEecccccccCCcchhhhhhcccccccccccCC
Q 030411 49 NYVNAEEAKNLIAVERYAVLDVRDNSQY-----------NRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGL 117 (178)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDvR~~~e~-----------~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 117 (178)
..|+++++.+++++++++|||||++.|| ..||||||+|+|+.++....
T Consensus 152 ~~i~~~e~~~~~~~~~~~liDvR~~~e~~G~~~~~~~~~~~ghIpgA~nip~~~~~~~~--------------------- 210 (280)
T 1urh_A 152 AVVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREG--------------------- 210 (280)
T ss_dssp GBCCHHHHHHHHHHTCSEEEECSCHHHHSSCCCC----CCSSSCTTCEECCGGGGBSSS---------------------
T ss_pred cEEcHHHHHHHhcCCCcEEEeCCchhhcccccCCCCCCCcCccCCCceEeeHHHhhcCC---------------------
Confidence 4599999999998778999999999999 58999999999998764310
Q ss_pred CCCCCChHHHHHHHh--cCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 118 PFTKQNPEFVQSVKS--QFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 118 ~~~~~~~~~~~~~~~--~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
...+.+.+..... .++++++||+||.+|.||..++..|...||+||++|+||+.+|..
T Consensus 211 --~~~~~~~l~~~~~~~~~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~ 270 (280)
T 1urh_A 211 --ELKTTDELDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEWGA 270 (280)
T ss_dssp --SBCCHHHHHHHHHTTTCCSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC---
T ss_pred --ccCCHHHHHHHHHHcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHHHhc
Confidence 1112333333333 468899999999999999999999999999999999999999964
No 30
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=99.85 E-value=1.8e-21 Score=158.81 Aligned_cols=110 Identities=12% Similarity=0.133 Sum_probs=89.1
Q ss_pred ceeeCHHHHHHHhhcCCeEEEeeCChhh-hhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHH
Q 030411 48 VNYVNAEEAKNLIAVERYAVLDVRDNSQ-YNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (178)
Q Consensus 48 ~~~Is~~e~~~~l~~~~~~lIDvR~~~e-~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (178)
...|+++++.+++++++++|||||++.| |..||||||+|+|+...... ......++++.
T Consensus 39 ~~~is~~~l~~~l~~~~~~iiDvR~~~e~y~~gHIpGAi~ip~~~~~~~--------------------~~~~~~~~~~~ 98 (318)
T 3hzu_A 39 ERLVTADWLSAHMGAPGLAIVESDEDVLLYDVGHIPGAVKIDWHTDLND--------------------PRVRDYINGEQ 98 (318)
T ss_dssp GGEECHHHHHHHTTCTTEEEEECCSSTTSGGGCBCTTEEECCHHHHHBC--------------------SSSSSBCCHHH
T ss_pred CceecHHHHHHhccCCCEEEEECCCChhHHhcCcCCCCeEeCchhhhcc--------------------CcccCCCCHHH
Confidence 4579999999999878899999999876 99999999999998532111 01223344444
Q ss_pred HHHHHhc--CCCCCeEEEEcCCCh-hHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 127 VQSVKSQ--FSPESKLLVVCQEGL-RSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 127 ~~~~~~~--~~~~~~iviyC~~g~-rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
+...+.. ++++++||+||++|. +|.++++.|+..||+||++|+||+.+|++
T Consensus 99 ~~~~l~~lgi~~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~W~~ 152 (318)
T 3hzu_A 99 FAELMDRKGIARDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGRDLWLA 152 (318)
T ss_dssp HHHHHHHTTCCTTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHHHHHHH
T ss_pred HHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCHHHHhh
Confidence 4554554 789999999999877 89999999999999999999999999974
No 31
>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A
Probab=99.85 E-value=4.6e-21 Score=148.03 Aligned_cols=102 Identities=18% Similarity=0.408 Sum_probs=82.3
Q ss_pred ccCceeeCHHHHHHHhhcC------CeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCC
Q 030411 45 RADVNYVNAEEAKNLIAVE------RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLP 118 (178)
Q Consensus 45 ~~~~~~Is~~e~~~~l~~~------~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 118 (178)
...++.|+++++.++++++ +++|||||++.||..||||||+|+|+..+..
T Consensus 40 ~~~~~~Is~~el~~~l~~~~~~~~~~~~lIDvR~~~Ey~~gHIpGAinip~~~l~~------------------------ 95 (211)
T 1qb0_A 40 HQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAE------------------------ 95 (211)
T ss_dssp STTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHH------------------------
T ss_pred cCCCCeeCHHHHHHHHhcccccCCCCEEEEECCCHHHHccCcCCCCEECCchHHHH------------------------
Confidence 3567899999999999763 7899999999999999999999999874321
Q ss_pred CCCCChHHHHHHHhcCC--CCCeE--EEEcC-CChhHHHHHHHHHH----------cCCceEEEeccccccccC
Q 030411 119 FTKQNPEFVQSVKSQFS--PESKL--LVVCQ-EGLRSAAAANKLEE----------AGFQNIACITSGLQTVKP 177 (178)
Q Consensus 119 ~~~~~~~~~~~~~~~~~--~~~~i--viyC~-~g~rs~~aa~~L~~----------~G~~~v~~l~GG~~~w~~ 177 (178)
.++.. ...++ ++++| |+||. +|.||..+++.|+. .||++|++|+||+.+|++
T Consensus 96 ------~~~~~-~~~l~~~~d~~ivvVvyC~~sG~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~~ 162 (211)
T 1qb0_A 96 ------SFLLK-SPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFP 162 (211)
T ss_dssp ------HHHHT-TTCCCSSTTSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTT
T ss_pred ------Hhhhh-hhhccccCCCCeEEEEECCCCCccHHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHHHHHHH
Confidence 01000 11233 67887 78899 99999999999986 699999999999999975
No 32
>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A
Probab=99.85 E-value=3.5e-21 Score=144.29 Aligned_cols=101 Identities=18% Similarity=0.389 Sum_probs=78.4
Q ss_pred cCceeeCHHHHHHHhhc------CCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCC
Q 030411 46 ADVNYVNAEEAKNLIAV------ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPF 119 (178)
Q Consensus 46 ~~~~~Is~~e~~~~l~~------~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 119 (178)
..++.|+++++.+++++ ++++|||||++.||..||||||+|+|+..+..
T Consensus 21 ~~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~ey~~ghIpgAinip~~~l~~------------------------- 75 (175)
T 2a2k_A 21 QDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAE------------------------- 75 (175)
T ss_dssp TTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHH-------------------------
T ss_pred CCCceeCHHHHHHHHhcccccCCCCEEEEECCCHHHHcCCcCCCcEECChhHHHH-------------------------
Confidence 46788999999999975 37899999999999999999999999874321
Q ss_pred CCCChHHHHHHHhcC--CCCCeEEE--EcC-CChhHHHHHHHHHH----------cCCceEEEeccccccccC
Q 030411 120 TKQNPEFVQSVKSQF--SPESKLLV--VCQ-EGLRSAAAANKLEE----------AGFQNIACITSGLQTVKP 177 (178)
Q Consensus 120 ~~~~~~~~~~~~~~~--~~~~~ivi--yC~-~g~rs~~aa~~L~~----------~G~~~v~~l~GG~~~w~~ 177 (178)
.++.. ...+ +++++||+ ||. +|.||..++..|++ +||+||++|+||+.+|++
T Consensus 76 -----~~~~~-~~~~~~~~~~~ivvv~yC~~~g~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~~ 142 (175)
T 2a2k_A 76 -----SFLLK-SPIAPCSLDKRVILIFHSEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFP 142 (175)
T ss_dssp -----HHHHS-SCCCC----CEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTT
T ss_pred -----Hhhhh-hhhccccCCCCeEEEEECCCCCCccHHHHHHHHHhhhhhhhhhhcCCceEEEEcCCHHHHHH
Confidence 00000 0112 26788754 699 89999999999986 499999999999999975
No 33
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=99.84 E-value=4.7e-21 Score=140.78 Aligned_cols=102 Identities=18% Similarity=0.324 Sum_probs=77.2
Q ss_pred CceeeCHHHHHHHhhcC----CeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCC
Q 030411 47 DVNYVNAEEAKNLIAVE----RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQ 122 (178)
Q Consensus 47 ~~~~Is~~e~~~~l~~~----~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 122 (178)
.++.|+++++.++++++ +++|||||++ ||..||||||+|+|+..+... .+
T Consensus 3 ~~~~Is~~el~~~l~~~~~~~~~~lIDvR~~-ey~~gHIpGAinip~~~l~~~----~~--------------------- 56 (152)
T 2j6p_A 3 NYTYIKPEELVELLDNPDSLVKAAVIDCRDS-DRDCGFIVNSINMPTISCTEE----MY--------------------- 56 (152)
T ss_dssp CCEEECHHHHHHHHHSHHHHHTEEEEECCST-TGGGCBCTTCEECCTTTCCHH----HH---------------------
T ss_pred CcCccCHHHHHHHHhCCCCCCCEEEEEcCcH-HhCcCcCCCcEECChhHhhHH----HH---------------------
Confidence 46789999999999763 7899999999 999999999999999865310 00
Q ss_pred ChHHHHHHHhcCCCCCeEEEEc-CCChhHHHHH----HHHHHcCC--ceEEEeccccccccC
Q 030411 123 NPEFVQSVKSQFSPESKLLVVC-QEGLRSAAAA----NKLEEAGF--QNIACITSGLQTVKP 177 (178)
Q Consensus 123 ~~~~~~~~~~~~~~~~~iviyC-~~g~rs~~aa----~~L~~~G~--~~v~~l~GG~~~w~~ 177 (178)
+++...... ...+.||+|| .+|.||..++ +.|.+.|| ++|++|+||+.+|++
T Consensus 57 -~~l~~~l~~--~~~~~vV~yC~~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~~W~~ 115 (152)
T 2j6p_A 57 -EKLAKTLFE--EKKELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWEAFYH 115 (152)
T ss_dssp -HHHHHHHHH--TTCCEEEEECSSSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHHHHHH
T ss_pred -HHHHHHhcc--cCCCEEEEEcCCCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHH
Confidence 111111111 1234577789 6899998888 77888997 589999999999964
No 34
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=99.84 E-value=7.5e-21 Score=151.76 Aligned_cols=109 Identities=16% Similarity=0.186 Sum_probs=87.8
Q ss_pred eeeCHHHHHHHhhcCCeEEEeeCC-hhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHH
Q 030411 49 NYVNAEEAKNLIAVERYAVLDVRD-NSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFV 127 (178)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDvR~-~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (178)
..|+++++.+++++++.+|||||+ +.||..||||||+|+|+..+.... .....++.+.+
T Consensus 6 ~~is~~~l~~~l~~~~~~liDvR~~~~ey~~ghIpgA~~ip~~~~~~~~--------------------~~~~~~~~~~~ 65 (277)
T 3aay_A 6 VLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDP--------------------VKRDFVDAQQF 65 (277)
T ss_dssp HEECHHHHHTTTTCTTEEEEEEESSSHHHHHCBSTTCEEEETTTTTBCS--------------------SSSSBCCHHHH
T ss_pred ceEcHHHHHHHhCCCCEEEEEcCCChhhHhhCCCCCcEEecccccccCC--------------------CCCCCCCHHHH
Confidence 579999999999877899999998 899999999999999987532210 12233344444
Q ss_pred HHHHhc--CCCCCeEEEEcCCCh-hHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 128 QSVKSQ--FSPESKLLVVCQEGL-RSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 128 ~~~~~~--~~~~~~iviyC~~g~-rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
...+.. ++++++||+||.+|. +|..+++.|+..||++|++|+||+.+|++
T Consensus 66 ~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~ 118 (277)
T 3aay_A 66 SKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKWEL 118 (277)
T ss_dssp HHHHHHHTCCTTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHHHHHHH
T ss_pred HHHHHHcCCCCCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCHHHHHH
Confidence 444444 788999999999865 78899999999999999999999999964
No 35
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=99.84 E-value=7.9e-21 Score=153.27 Aligned_cols=107 Identities=16% Similarity=0.259 Sum_probs=87.7
Q ss_pred eeeCHHHHHHHhhcCCeEEEeeCChhhh------------hhccCCCeEEecccccccCCcchhhhhhcccccccccccC
Q 030411 49 NYVNAEEAKNLIAVERYAVLDVRDNSQY------------NRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFG 116 (178)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDvR~~~e~------------~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 116 (178)
..|+++++.+++++++.+|||||++.|| ..||||||+|+|+.++....
T Consensus 160 ~~i~~~e~~~~~~~~~~~liDvR~~~e~~G~~~~~~~~~~~~ghIpgA~nip~~~l~~~~-------------------- 219 (296)
T 1rhs_A 160 LLKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTED-------------------- 219 (296)
T ss_dssp GEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTCEECCGGGGBCTT--------------------
T ss_pred eEEcHHHHHHHhcCCCceEEeCCchhhcccccCCcccCCCcCccCCCCEeecHHHhcCCC--------------------
Confidence 5799999999998778999999999999 78999999999998764310
Q ss_pred CCCCCCChHHHHHHHh--cCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 117 LPFTKQNPEFVQSVKS--QFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 117 ~~~~~~~~~~~~~~~~--~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
....+.+.+...+. .++++++||+||.+|.||..++..|..+||+||++|+||+.+|..
T Consensus 220 --~~~~~~~~l~~~~~~~~~~~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~ 280 (296)
T 1rhs_A 220 --GFEKSPEELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFH 280 (296)
T ss_dssp --SCBCCHHHHHHHHHHTTCCTTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHHHHHH
T ss_pred --CcCCCHHHHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHHHHhc
Confidence 01112333333333 368899999999999999999999999999999999999999963
No 36
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=99.84 E-value=4.7e-21 Score=138.04 Aligned_cols=109 Identities=12% Similarity=0.203 Sum_probs=72.7
Q ss_pred eeeCHHHHHH--------HhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCC
Q 030411 49 NYVNAEEAKN--------LIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFT 120 (178)
Q Consensus 49 ~~Is~~e~~~--------~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 120 (178)
+.|+++|+.+ ++++++++|||||++.||..||||||+|+|+..+.... .+... .
T Consensus 1 k~Is~~~l~~~l~~~~~~~l~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~---~~~~~---------------~ 62 (142)
T 2ouc_A 1 KIIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRR---RLQQG---------------K 62 (142)
T ss_dssp CEECHHHHHHHHHC----------CEEEECSCHHHHHHEEETTCEECCCSSHHHHH---HHHTT---------------S
T ss_pred CccCHHHHHHHHHhcccccCCCCCCEEEEeCCHHHhhhhhccCccccCccHHHHHH---HhhcC---------------C
Confidence 3689999998 55556889999999999999999999999997542100 00000 0
Q ss_pred CCChHHHHHH-----HhcCCCCCeEEEEcCCChhH---------HHHHHHHHHcCCceEEEeccccccccC
Q 030411 121 KQNPEFVQSV-----KSQFSPESKLLVVCQEGLRS---------AAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 121 ~~~~~~~~~~-----~~~~~~~~~iviyC~~g~rs---------~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
..-++++... .... ++++||+||++|.++ ..++..|...|| +|++|+||+.+|++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~-~~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~-~v~~l~GG~~~w~~ 131 (142)
T 2ouc_A 63 ITVLDLISCREGKDSFKRI-FSKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGK-EPLVLKGGLSSFKQ 131 (142)
T ss_dssp SCHHHHHHTTSCTTHHHHH-HHSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTC-CCEEETTHHHHHTT
T ss_pred cchhhhCCChhhhHHHhcc-CCCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCC-cEEEEccCHHHHHH
Confidence 0001111100 0000 267899999998874 568888999999 89999999999975
No 37
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=99.84 E-value=7.2e-21 Score=154.20 Aligned_cols=107 Identities=15% Similarity=0.216 Sum_probs=87.6
Q ss_pred eeeCHHHHHHHhhcCCeEEEeeCChhhh-----------hhccCCCeEEecccccccCCcchhhhhhcccccccccccCC
Q 030411 49 NYVNAEEAKNLIAVERYAVLDVRDNSQY-----------NRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGL 117 (178)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDvR~~~e~-----------~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 117 (178)
..++++++.+.+++++++|||||+++|| ..||||||+|+|+.++.+..
T Consensus 175 ~~i~~~e~~~~~~~~~~~liDvR~~~ef~G~~~~p~~~~~~GhIpGAiniP~~~l~~~~--------------------- 233 (302)
T 3olh_A 175 FIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQE--------------------- 233 (302)
T ss_dssp GEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSTTCCCCCCTTCEECCGGGGBCSS---------------------
T ss_pred ceecHHHHHHhhcCCCcEEEecCCHHHccccccCCCcCCcCccCCCceecCHHHhcCCC---------------------
Confidence 4699999999998788999999999999 78999999999998764321
Q ss_pred CCCCCChHHHHHHHh--cCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 118 PFTKQNPEFVQSVKS--QFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 118 ~~~~~~~~~~~~~~~--~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
....+++.+...+. .++++++||+||.+|.||..++..|+.+||++|++|+||+.+|.+
T Consensus 234 -~~~~~~~~l~~~~~~~~~~~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~~W~~ 294 (302)
T 3olh_A 234 -GLEKSPEEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYM 294 (302)
T ss_dssp -SCBCCHHHHHHHHHHTTCCTTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHHHHHH
T ss_pred -CccCCHHHHHHHHHhcCCCCCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHHHHhh
Confidence 01122333333333 478899999999999999999999999999999999999999964
No 38
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=99.83 E-value=3.5e-21 Score=154.24 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=88.0
Q ss_pred ceeeCHHHHHHHhhcCCeEEEeeC-ChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHH
Q 030411 48 VNYVNAEEAKNLIAVERYAVLDVR-DNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (178)
Q Consensus 48 ~~~Is~~e~~~~l~~~~~~lIDvR-~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (178)
...|+++++.+++++++++||||| ++.||..||||||+|+|+..+... ..+...++++.
T Consensus 7 ~~~is~~~l~~~l~~~~~~liDvR~~~~e~~~ghIpgA~~ip~~~~~~~--------------------~~~~~~~~~~~ 66 (285)
T 1uar_A 7 EVLVSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWD--------------------PVVRDFISEEE 66 (285)
T ss_dssp GGEECHHHHHTTTTCTTEEEEEECSSTTHHHHCBCTTCEEECHHHHHBC--------------------SSSSSBCCHHH
T ss_pred CceEcHHHHHHhcCCCCEEEEEcCCCcchhhcCcCCCCEECCchhhccC--------------------CcccCCCCHHH
Confidence 357999999999987789999999 789999999999999998742111 01223334444
Q ss_pred HHHHHhc--CCCCCeEEEEcCCCh-hHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 127 VQSVKSQ--FSPESKLLVVCQEGL-RSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 127 ~~~~~~~--~~~~~~iviyC~~g~-rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
+...... ++++++||+||++|. +|..+++.|+..||+||++|+||+.+|++
T Consensus 67 ~~~~~~~~gi~~~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~ 120 (285)
T 1uar_A 67 FAKLMERLGISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVE 120 (285)
T ss_dssp HHHHHHHTTCCTTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHHHHHHH
T ss_pred HHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCHHHHHH
Confidence 4444443 688999999999988 79999999999999999999999999964
No 39
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=99.83 E-value=2.1e-20 Score=150.74 Aligned_cols=111 Identities=10% Similarity=0.093 Sum_probs=89.3
Q ss_pred eeeCHHHHHHHhhc----CCeEEEeeC--------ChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccC
Q 030411 49 NYVNAEEAKNLIAV----ERYAVLDVR--------DNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFG 116 (178)
Q Consensus 49 ~~Is~~e~~~~l~~----~~~~lIDvR--------~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 116 (178)
..|+++++.+++++ ++++||||| ++.||..||||||+|+|+..+.... ..
T Consensus 8 ~~is~~~l~~~l~~~~~~~~~~liDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~l~~~~------------------~~ 69 (296)
T 1rhs_A 8 ALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKA------------------SP 69 (296)
T ss_dssp SEECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCTT------------------SS
T ss_pred ceeeHHHHHHHHhccccCCCeEEEEecccCcCCcchhhhHhhCcCCCCEEeCHHHhcCCC------------------CC
Confidence 57999999999976 589999999 5899999999999999998654211 11
Q ss_pred CCCCCCChHHHHHHHhc--CCCCCeEEEEcCC--Chh-HHHHHHHHHHcCCceEEEeccccccccC
Q 030411 117 LPFTKQNPEFVQSVKSQ--FSPESKLLVVCQE--GLR-SAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 117 ~~~~~~~~~~~~~~~~~--~~~~~~iviyC~~--g~r-s~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
.+.+.++++.+...+.. ++++++||+||.+ |.+ +.++++.|+..||++|++|+||+.+|++
T Consensus 70 ~~~~lp~~~~~~~~l~~lgi~~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~W~~ 135 (296)
T 1rhs_A 70 YEVMLPSEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLK 135 (296)
T ss_dssp SSSCCCCHHHHHHHHHHTTCCTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHcCCCCCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCHHHHHH
Confidence 23444554444444443 6889999999998 776 7899999999999999999999999964
No 40
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=151.11 Aligned_cols=111 Identities=9% Similarity=0.108 Sum_probs=90.6
Q ss_pred eeeCHHHHHHHhhcC----CeEEEeeC---------ChhhhhhccCCCeEEecccccccCCcchhhhhhccccccccccc
Q 030411 49 NYVNAEEAKNLIAVE----RYAVLDVR---------DNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFF 115 (178)
Q Consensus 49 ~~Is~~e~~~~l~~~----~~~lIDvR---------~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~ 115 (178)
..|+++++.++++++ +++||||| ++.||..||||||+|+|+..+.... .
T Consensus 22 ~lIs~~~l~~~l~~~~~~~~~~ilDvR~~~~~~~~~~~~ey~~gHIpGAi~i~~~~~~~~~------------------~ 83 (302)
T 3olh_A 22 SMVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFFDIDQCSDRT------------------S 83 (302)
T ss_dssp CEECHHHHHHHHHCCCSSCCEEEEECCCCCCC--CCHHHHHHHSCCTTCEECCTTTSSCSS------------------C
T ss_pred CccCHHHHHHHhcCcCCCCCEEEEEeecCCCccCcccHHHHhhCcCCCCeEeCHHHhcCcC------------------C
Confidence 569999999999865 89999999 7889999999999999997653221 1
Q ss_pred CCCCCCCChHHHHHHHhc--CCCCCeEEEEcCC---ChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 116 GLPFTKQNPEFVQSVKSQ--FSPESKLLVVCQE---GLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~--~~~~~~iviyC~~---g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
..+.+.+..+.+...+.. ++++++||+||.+ +.+|.++++.|+..||++|++|+||+.+|++
T Consensus 84 ~~~~~lp~~~~~~~~~~~lgi~~~~~VVvyc~~~~g~~~a~ra~~~L~~~G~~~V~~L~GG~~~W~~ 150 (302)
T 3olh_A 84 PYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLRHWLR 150 (302)
T ss_dssp SSSSCCCCHHHHHHHHHHTTCCSSCEEEEECCCTTSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHcCCCCCCEEEEEeCCCCCcchHHHHHHHHHHcCCCcEEECCCCHHHHHH
Confidence 245566665555555555 4889999999963 4569999999999999999999999999974
No 41
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=99.83 E-value=3.2e-20 Score=148.62 Aligned_cols=106 Identities=16% Similarity=0.222 Sum_probs=86.8
Q ss_pred eeeCHHHHHHHhh---cCCeEEEeeCChhhhh----------------hccCCCeEEecccccccCCcchhhhhhccccc
Q 030411 49 NYVNAEEAKNLIA---VERYAVLDVRDNSQYN----------------RAHIKSSYHVPLFIENQDNDLGTIIKRTVHNN 109 (178)
Q Consensus 49 ~~Is~~e~~~~l~---~~~~~lIDvR~~~e~~----------------~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~ 109 (178)
..|+++++.++++ .++..|||||++.||. .||||||+|+|+..+.+..
T Consensus 146 ~~i~~~el~~~l~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~------------- 212 (285)
T 1uar_A 146 IRAYRDDVLEHIIKVKEGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAKAVNPD------------- 212 (285)
T ss_dssp GEECHHHHHHHHHHHHTTSEEEEECSCHHHHHTCC--------CCCSCCSBCTTCEECCGGGGBCTT-------------
T ss_pred eEEcHHHHHHHHhhcccCCCcEEEcCCccceeeeccccccccccccccCCcCCCccccCHHHhcCCC-------------
Confidence 4599999999884 2445799999999998 7999999999998664310
Q ss_pred ccccccCCCCCCCChHHHHHHHhc--CCCCCeEEEEcCCChhHHHHHHHHH-HcCCceEEEecccccccc
Q 030411 110 FSGLFFGLPFTKQNPEFVQSVKSQ--FSPESKLLVVCQEGLRSAAAANKLE-EAGFQNIACITSGLQTVK 176 (178)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iviyC~~g~rs~~aa~~L~-~~G~~~v~~l~GG~~~w~ 176 (178)
....+++.+...+.. ++++++||+||.+|.||..+++.|+ ..||+||++|+||+.+|+
T Consensus 213 ---------~~~~~~~~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~~W~ 273 (285)
T 1uar_A 213 ---------GTFKSAEELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWTEWG 273 (285)
T ss_dssp ---------SCBCCHHHHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHHHHT
T ss_pred ---------CcCCCHHHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchHHHHh
Confidence 112334455555555 7899999999999999999999999 999999999999999997
No 42
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=99.82 E-value=2.7e-20 Score=151.80 Aligned_cols=105 Identities=16% Similarity=0.258 Sum_probs=86.4
Q ss_pred eeeCHHHHHHHhhcCCeEEEeeCChhhhhh----------------ccCCCeEEecccccccCCcchhhhhhcccccccc
Q 030411 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYNR----------------AHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSG 112 (178)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~----------------ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~ 112 (178)
..|+++++.+++++. +|||||+++||.. ||||||+|+|+.++...
T Consensus 179 ~~i~~~el~~~l~~~--~liDvR~~~e~~~~~~~~~~~~~~~~~~~GhIpGA~niP~~~~~~~----------------- 239 (318)
T 3hzu_A 179 IRAFRDDVLAILGAQ--PLIDVRSPEEYTGKRTHMPDYPEEGALRAGHIPTAVHIPWGKAADE----------------- 239 (318)
T ss_dssp TBCCHHHHHHHTTTS--CEEECSCHHHHHTSCSSCTTSCSCSCSSCSBCTTCEECCGGGGBCT-----------------
T ss_pred ccccHHHHHHhhcCC--eEEecCCHHHhcccccCccccccccCCcCcCCCCeeecCHHHhcCC-----------------
Confidence 358999999998754 8999999999998 99999999999865321
Q ss_pred cccCCCCCCCChHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHH-cCCceEEEeccccccccC
Q 030411 113 LFFGLPFTKQNPEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEE-AGFQNIACITSGLQTVKP 177 (178)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~-~G~~~v~~l~GG~~~w~~ 177 (178)
......++.+...+..++++++||+||.+|.||..++..|.+ .||+||++|+||+.+|..
T Consensus 240 -----~g~~~~~~~l~~~~~~l~~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~~~W~~ 300 (318)
T 3hzu_A 240 -----SGRFRSREELERLYDFINPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSWTEWGN 300 (318)
T ss_dssp -----TSCBCCHHHHHHHTTTCCTTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHHHHHTT
T ss_pred -----CCcCCCHHHHHHHhcCCCCCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcHHHHhc
Confidence 011223344555556688999999999999999999999997 999999999999999973
No 43
>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A*
Probab=99.82 E-value=4e-21 Score=143.64 Aligned_cols=107 Identities=21% Similarity=0.304 Sum_probs=78.3
Q ss_pred cCceeeCHHHHHHHhhcC-------CeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCC
Q 030411 46 ADVNYVNAEEAKNLIAVE-------RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLP 118 (178)
Q Consensus 46 ~~~~~Is~~e~~~~l~~~-------~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 118 (178)
..++.|+++++.++++++ +++|||||+ .||..||||||+|+|+..+.... ..+
T Consensus 28 ~~~~~Is~~eL~~~l~~~~~~~~~~~~~iIDVR~-~Ey~~GHIpGAiniP~~~l~~~~--~~l----------------- 87 (169)
T 3f4a_A 28 TNVKYLDPTELHRWMQEGHTTTLREPFQVVDVRG-SDYMGGHIKDGWHYAYSRLKQDP--EYL----------------- 87 (169)
T ss_dssp CSEEEECHHHHHHHHHHTSCTTTCCCEEEEECCS-TTCTTCEETTCEECCHHHHHHCH--HHH-----------------
T ss_pred CCCcEeCHHHHHHHHhcCCccCcCCCEEEEECCc-hHHccCcCCCCEECCHHHhhccc--ccH-----------------
Confidence 467899999999999754 489999999 89999999999999998654210 000
Q ss_pred CCCCChHHHHHHHhc-C--CCCCeEEEEcCCC-hhHHHHHHHHHHc----C--CceEEEeccccccccC
Q 030411 119 FTKQNPEFVQSVKSQ-F--SPESKLLVVCQEG-LRSAAAANKLEEA----G--FQNIACITSGLQTVKP 177 (178)
Q Consensus 119 ~~~~~~~~~~~~~~~-~--~~~~~iviyC~~g-~rs~~aa~~L~~~----G--~~~v~~l~GG~~~w~~ 177 (178)
+++....... + ..+++||+||.+| .|+..++.+|.+. | +.+|++|+||+.+|++
T Consensus 88 -----~~l~~~~~~~~~~~~~~~~IVvyC~sG~~Rs~~aa~~l~~~L~~~G~~~~~V~~L~GG~~aW~~ 151 (169)
T 3f4a_A 88 -----RELKHRLLEKQADGRGALNVIFHCMLSQQRGPSAAMLLLRSLDTAELSRCRLWVLRGGFSRWQS 151 (169)
T ss_dssp -----HHHHHHHHHHHHTSSSCEEEEEECSSSSSHHHHHHHHHHHTCCHHHHTTEEEEEETTHHHHHHH
T ss_pred -----HHHHHHHHhhcccccCCCeEEEEeCCCCCcHHHHHHHHHHHHHHcCCCCCCEEEECCCHHHHHH
Confidence 1111111111 1 1247899999986 8999888777553 5 5789999999999964
No 44
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=99.82 E-value=5.1e-20 Score=135.98 Aligned_cols=117 Identities=14% Similarity=0.204 Sum_probs=77.5
Q ss_pred cCceeeCHHHHHHHhh--------cCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCC
Q 030411 46 ADVNYVNAEEAKNLIA--------VERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGL 117 (178)
Q Consensus 46 ~~~~~Is~~e~~~~l~--------~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 117 (178)
..++.|+++++.++++ +++.+|||||++.||..||||||+|+|+..+... +........+..-.
T Consensus 8 ~~~~~is~~el~~~l~~~~~~~~~~~~~~liDvR~~~e~~~ghI~ga~~i~~~~l~~~--------~~~~~~~~~~~~~~ 79 (158)
T 3tg1_B 8 ASIKIIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISR--------RRLQQGKITVLDLI 79 (158)
T ss_dssp ---CEECHHHHHHHHCC----------CEEEECSCHHHHHHCCBTTCEECCCSSHHHH--------HHHTTSSCCHHHHT
T ss_pred CCCcEecHHHHHHHHHhcccccCCCCCEEEEEcCCHHHHHhCCCCCceeechhHHHHH--------hhhhcCcccHHhhc
Confidence 4678899999999997 3478999999999999999999999999864200 00000000000000
Q ss_pred CCCCCChHHHHHHHhcCCCCCeEEEEcCCC---------hhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 118 PFTKQNPEFVQSVKSQFSPESKLLVVCQEG---------LRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~iviyC~~g---------~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
+.......+ . ..++++||+||.+| .+|..+++.|...|| +|++|+||+.+|++
T Consensus 80 ~~~~~~~~~-----~-~~~~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~-~v~~L~GG~~~W~~ 141 (158)
T 3tg1_B 80 SCREGKDSF-----K-RIFSKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGK-EPLVLKGGLSSFKQ 141 (158)
T ss_dssp CCCCSSCSS-----T-TTTTSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTC-CEEEETTHHHHHTS
T ss_pred CCHHHHHHH-----h-ccCCCeEEEEECCCCcccccCcchHHHHHHHHHHhCCC-cEEEeCCcHHHHHH
Confidence 000000000 0 12478999999998 468999999999999 69999999999975
No 45
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=99.82 E-value=4.9e-20 Score=147.00 Aligned_cols=104 Identities=20% Similarity=0.264 Sum_probs=83.1
Q ss_pred eeCHHHHHHHhhcCCeEEEeeCChhhhhh----------------ccCCCeEEecccccccCCcchhhhhhccccccccc
Q 030411 50 YVNAEEAKNLIAVERYAVLDVRDNSQYNR----------------AHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGL 113 (178)
Q Consensus 50 ~Is~~e~~~~l~~~~~~lIDvR~~~e~~~----------------ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~ 113 (178)
.++++++.+++.+++ |||||++.||.. ||||||+|+|+.++...
T Consensus 145 ~~~~~el~~~~~~~~--liDvR~~~e~~~~~~~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~------------------ 204 (277)
T 3aay_A 145 RAFRDEVLAAINVKN--LIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANE------------------ 204 (277)
T ss_dssp EECHHHHHHTTTTSE--EEECSCHHHHHTSCCC-----CCCCSCCSBCTTCEECCGGGGBCT------------------
T ss_pred hcCHHHHHHhcCCCC--EEEeCChHHeeeeecccccccccccccCCcCCCceecCHHHhcCC------------------
Confidence 488999999887554 999999999986 99999999999754321
Q ss_pred ccCCCCCCCChHHHHHHHh--cCCCCCeEEEEcCCChhHHHHHHHHHH-cCCceEEEeccccccccC
Q 030411 114 FFGLPFTKQNPEFVQSVKS--QFSPESKLLVVCQEGLRSAAAANKLEE-AGFQNIACITSGLQTVKP 177 (178)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~--~~~~~~~iviyC~~g~rs~~aa~~L~~-~G~~~v~~l~GG~~~w~~ 177 (178)
.....+++.+...+. .++++++||+||.+|.||..+++.|++ +||+||++|+||+.+|..
T Consensus 205 ----~~~~~~~~~l~~~~~~~~~~~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~~W~~ 267 (277)
T 3aay_A 205 ----DGTFKSDEELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGS 267 (277)
T ss_dssp ----TSCBCCHHHHHHHHHHHTCCTTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHHHHTT
T ss_pred ----CCcCCCHHHHHHHHHHcCCCCCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchHHHHhc
Confidence 111223333444343 378899999999999999999999996 999999999999999975
No 46
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=99.81 E-value=4.2e-20 Score=157.77 Aligned_cols=96 Identities=23% Similarity=0.373 Sum_probs=86.0
Q ss_pred CceeeCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHH
Q 030411 47 DVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEF 126 (178)
Q Consensus 47 ~~~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (178)
....|+++++.+++++++.+|||||++.||..||||||+|+|+.++.+
T Consensus 372 ~~~~i~~~~l~~~~~~~~~~lvDvR~~~e~~~ghIpgA~~ip~~~l~~-------------------------------- 419 (474)
T 3tp9_A 372 SYANVSPDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIPLSKLAA-------------------------------- 419 (474)
T ss_dssp CCEEECHHHHHHTTTTTCCEEEECSCHHHHHHCBCTTCEECCHHHHTT--------------------------------
T ss_pred cccccCHHHHHHHhcCCCcEEEECCCHHHHhcCcCCCCEECCHHHHHH--------------------------------
Confidence 457899999999998778999999999999999999999999975532
Q ss_pred HHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 127 VQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 127 ~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
....++++++||+||.+|.||..++..|+..||+||++|+||+.+|++
T Consensus 420 ---~~~~l~~~~~vvv~C~~G~ra~~a~~~L~~~G~~~v~~~~Gg~~~W~~ 467 (474)
T 3tp9_A 420 ---HIHDVPRDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYEAWRG 467 (474)
T ss_dssp ---TGGGSCSSSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHHHHHH
T ss_pred ---HHhcCCCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecChHHHHHh
Confidence 134467899999999999999999999999999999999999999974
No 47
>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1
Probab=99.80 E-value=5.4e-21 Score=140.16 Aligned_cols=116 Identities=11% Similarity=0.084 Sum_probs=80.2
Q ss_pred CceeeCHHHHHHHhhcC--CeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCCh
Q 030411 47 DVNYVNAEEAKNLIAVE--RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNP 124 (178)
Q Consensus 47 ~~~~Is~~e~~~~l~~~--~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 124 (178)
....|+++++.++++++ +++|||||++.||..||||||+|+|+..+... + .... ........+.+
T Consensus 14 ~~~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHIpgAinip~~~~~~~--------~-~~~~----~~~~~~~l~~~ 80 (154)
T 1hzm_A 14 MAISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLR--------R-LQKG----NLPVRALFTRG 80 (154)
T ss_dssp CSSBSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSSSCCCCCCSSHHHH--------T-BCCS----CCCTTTTSTTS
T ss_pred cccccCHHHHHHHHhCCCCCEEEEEcCCHHHHhhccccCceEeCccHHHHh--------h-hhcC----cccHHHhCCCH
Confidence 45679999999998765 78999999999999999999999998753200 0 0000 00011112222
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhH-------HHHHHHHHHc---CCceEEEeccccccccC
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRS-------AAAANKLEEA---GFQNIACITSGLQTVKP 177 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs-------~~aa~~L~~~---G~~~v~~l~GG~~~w~~ 177 (178)
+..+. +..++++++||+||.+|.++ ..+++.|+.+ ||+ |++|+||+.+|++
T Consensus 81 ~~~~~-~~~~~~~~~iVvyc~~g~~~~~~~~aa~~~~~~l~~l~~~G~~-v~~L~GG~~~W~~ 141 (154)
T 1hzm_A 81 EDRDR-FTRRCGTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCR-AFYLEGGFSKFQA 141 (154)
T ss_dssp HHHHH-HHHSTTSSCEEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTCC-CEECCCCHHHHHH
T ss_pred HHHHH-HhccCCCCeEEEEeCCCCccccccccchHHHHHHHHHHHCCCc-eEEEcChHHHHHH
Confidence 22222 23467888999999988765 3446666655 998 9999999999964
No 48
>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex, E3 ligase, protein ubiquitination, hydrolase, protease, UBL conjugation pathway; 2.30A {Homo sapiens} SCOP: c.46.1.4
Probab=99.80 E-value=1.2e-19 Score=134.02 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=75.8
Q ss_pred cCceeeCHHHHHHHhhcC--CeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCC
Q 030411 46 ADVNYVNAEEAKNLIAVE--RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN 123 (178)
Q Consensus 46 ~~~~~Is~~e~~~~l~~~--~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 123 (178)
...+.|+++++.++++++ +.+|||||++.||+.||||||+|+|+..+........+.+. .
T Consensus 17 ~~~~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gAinip~~~l~~~~~~~~l~~~----------------l-- 78 (157)
T 2gwf_A 17 RGSGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAH----------------L-- 78 (157)
T ss_dssp --CCEECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBTTCEECCGGGCCTTCCHHHHHHT----------------S--
T ss_pred CCCCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhcCccCCcccCHHHcCCCCcHHHHHHH----------------c--
Confidence 356789999999999866 89999999999999999999999999866432211111111 0
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCChh----HHHHHHHHH----Hc----CCc-eEEEeccccccccC
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEGLR----SAAAANKLE----EA----GFQ-NIACITSGLQTVKP 177 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g~r----s~~aa~~L~----~~----G~~-~v~~l~GG~~~w~~ 177 (178)
++.....+....+...||+||.++.+ +..+++.|. +. |+. +|++|+|||.+|++
T Consensus 79 p~~~~~l~~~~~~~~~VVvy~~~~~~~~~~a~~~l~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~ 145 (157)
T 2gwf_A 79 PDDSKDTWKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLL 145 (157)
T ss_dssp CHHHHHHHHTTTTSSEEEEECSSCCGGGCCTTCHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHH
T ss_pred CHHHHHHHHhcCCCCEEEEEcCCCCccccCcccHHHHHHHHHHhhccccccCCceEEEccHHHHHHH
Confidence 11111222333344569999987643 334555554 22 454 39999999999974
No 49
>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4
Probab=99.80 E-value=1.5e-19 Score=133.37 Aligned_cols=114 Identities=11% Similarity=0.074 Sum_probs=76.6
Q ss_pred cCceeeCHHHHHHHhhcC--CeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCC
Q 030411 46 ADVNYVNAEEAKNLIAVE--RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQN 123 (178)
Q Consensus 46 ~~~~~Is~~e~~~~l~~~--~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 123 (178)
+....|+++++.++++++ +.+|||||+++||+.||||||+|+|+..+........+... . ++
T Consensus 12 ~~~~~i~~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gainip~~~~~~~~~~~~l~~~---------------l-p~ 75 (157)
T 1whb_A 12 KEKGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAH---------------L-PD 75 (157)
T ss_dssp CCCSEECHHHHHHHHTCSSSCEEEEEESCHHHHHHCCBTTCEEECSSSCCTTCCHHHHHHS---------------C-CT
T ss_pred ccCCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhccccCCcccCHHHccCCCcHHHHHHH---------------C-Ch
Confidence 456789999999999866 89999999999999999999999999866432111111111 0 11
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCChh----HHHHHHHHHH----c----CCc-eEEEeccccccccC
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEGLR----SAAAANKLEE----A----GFQ-NIACITSGLQTVKP 177 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g~r----s~~aa~~L~~----~----G~~-~v~~l~GG~~~w~~ 177 (178)
. ....+....+...||+||.++.+ +..+++.|.+ . ||. +|++|+|||.+|++
T Consensus 76 ~--~~~~~~~~~~~~~VVvy~~~~~~~~~~a~~~~~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~ 140 (157)
T 1whb_A 76 D--SKDTWKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLL 140 (157)
T ss_dssp T--HHHHHHGGGTSSEEEEECSSCCGGGCCTTCHHHHHHHTTTTTCSSCCCSSCCEEESSCHHHHHH
T ss_pred H--HHHHHHhcCCCCEEEEECCCCCccccccccHHHHHHHHHHHhccccccCCCeEEEcchHHHHHH
Confidence 0 11111222234569999987643 3455666663 2 454 39999999999974
No 50
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=99.79 E-value=7.8e-20 Score=159.51 Aligned_cols=96 Identities=22% Similarity=0.368 Sum_probs=85.0
Q ss_pred ccCceeeCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCCh
Q 030411 45 RADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNP 124 (178)
Q Consensus 45 ~~~~~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 124 (178)
...++.|+++++.++++ ++.+|||||+++||..||||||+|+|+.++.+
T Consensus 485 ~~~~~~i~~~~~~~~~~-~~~~~iDvR~~~e~~~ghi~ga~~ip~~~l~~------------------------------ 533 (588)
T 3ics_A 485 DGFVDTVQWHEIDRIVE-NGGYLIDVREPNELKQGMIKGSINIPLDELRD------------------------------ 533 (588)
T ss_dssp TTSCCEECTTTHHHHHH-TTCEEEECSCGGGGGGCBCTTEEECCHHHHTT------------------------------
T ss_pred ccccceecHHHHHHHhc-CCCEEEEcCCHHHHhcCCCCCCEECCHHHHHH------------------------------
Confidence 45678899999999996 56899999999999999999999999975532
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
....++++++||+||.+|.||..+++.|++.||+ |++|+||+.+|++
T Consensus 534 -----~~~~l~~~~~iv~~C~~g~rs~~a~~~l~~~G~~-v~~l~GG~~~w~~ 580 (588)
T 3ics_A 534 -----RLEEVPVDKDIYITCQLGMRGYVAARMLMEKGYK-VKNVDGGFKLYGT 580 (588)
T ss_dssp -----CGGGSCSSSCEEEECSSSHHHHHHHHHHHHTTCC-EEEETTHHHHHHH
T ss_pred -----HHhhCCCCCeEEEECCCCcHHHHHHHHHHHcCCc-EEEEcchHHHHHh
Confidence 1344678999999999999999999999999998 9999999999974
No 51
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=99.79 E-value=2.1e-19 Score=149.54 Aligned_cols=111 Identities=17% Similarity=0.147 Sum_probs=86.8
Q ss_pred ceeeCHHHHHHHhhcCCeEEEeeCC--------hhhhhhccCCCeEEecccc-cccCCcchhhhhhcccccccccccCCC
Q 030411 48 VNYVNAEEAKNLIAVERYAVLDVRD--------NSQYNRAHIKSSYHVPLFI-ENQDNDLGTIIKRTVHNNFSGLFFGLP 118 (178)
Q Consensus 48 ~~~Is~~e~~~~l~~~~~~lIDvR~--------~~e~~~ghIpgAvnip~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~ 118 (178)
...|+++++.+++++ ++|||||+ +.||..||||||+|+|+.. +..... ....+
T Consensus 13 ~~~Is~~el~~~l~~--~~iIDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~~l~~~~~----------------~~~~~ 74 (373)
T 1okg_A 13 KVFLDPSEVADHLAE--YRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVP----------------TSTAR 74 (373)
T ss_dssp CCEECHHHHTTCGGG--SEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTSCCCCT----------------TCCCS
T ss_pred CcEEcHHHHHHHcCC--cEEEEecCCccccccchhHHhhCcCCCCEEeCchhhhhcccc----------------cCCcc
Confidence 568999999999875 89999998 6899999999999999975 432100 01123
Q ss_pred CCCCChHHHHHHHh--cCCCCCeEEEEc-CCChhHH-HHHHHHHHcCCceEEEeccccccccC
Q 030411 119 FTKQNPEFVQSVKS--QFSPESKLLVVC-QEGLRSA-AAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 119 ~~~~~~~~~~~~~~--~~~~~~~iviyC-~~g~rs~-~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
...+..+.+..... .++++++||+|| .+|.+|. ++++.|+.+|| ||++|+||+.+|++
T Consensus 75 ~~lp~~~~f~~~l~~~gi~~d~~VVvYc~~~G~rsa~ra~~~L~~~G~-~V~~L~GG~~aW~~ 136 (373)
T 1okg_A 75 HPLPPXAEFIDWCMANGMAGELPVLCYDDECGAMGGCRLWWMLNSLGA-DAYVINGGFQACKA 136 (373)
T ss_dssp SCCCCHHHHHHHHHHTTCSSSSCEEEECSSTTTTTHHHHHHHHHHHTC-CEEEETTTTHHHHT
T ss_pred ccCCCHHHHHHHHHHcCCCCCCeEEEEeCCCCchHHHHHHHHHHHcCC-eEEEeCCCHHHHHh
Confidence 44555444444343 368899999999 6788886 99999999999 99999999999975
No 52
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=99.79 E-value=7.7e-20 Score=158.48 Aligned_cols=95 Identities=20% Similarity=0.373 Sum_probs=83.6
Q ss_pred ccCceeeCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCCh
Q 030411 45 RADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNP 124 (178)
Q Consensus 45 ~~~~~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 124 (178)
...++.|+++++.++ +++++|||||+++||+.+|||||+|+|+.++.+.
T Consensus 469 ~~~~~~i~~~~~~~~--~~~~~~iDvR~~~e~~~~~i~ga~~ip~~~l~~~----------------------------- 517 (565)
T 3ntd_A 469 KGDATPIHFDQIDNL--SEDQLLLDVRNPGELQNGGLEGAVNIPVDELRDR----------------------------- 517 (565)
T ss_dssp HTSCCEECTTTTTSC--CTTEEEEECSCGGGGGGCCCTTCEECCGGGTTTS-----------------------------
T ss_pred ccccceeeHHHHHhC--CCCcEEEEeCCHHHHhcCCCCCcEECCHHHHHHH-----------------------------
Confidence 456778999998877 5689999999999999999999999999866421
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
...++++++||+||.+|.||..+++.|++.|| ||++|+||+.+|++
T Consensus 518 ------~~~~~~~~~iv~~c~~g~rs~~a~~~l~~~G~-~v~~l~gG~~~w~~ 563 (565)
T 3ntd_A 518 ------MHELPKDKEIIIFSQVGLRGNVAYRQLVNNGY-RARNLIGGYRTYKF 563 (565)
T ss_dssp ------GGGSCTTSEEEEECSSSHHHHHHHHHHHHTTC-CEEEETTHHHHHHH
T ss_pred ------HhhcCCcCeEEEEeCCchHHHHHHHHHHHcCC-CEEEEcChHHHHHh
Confidence 34467899999999999999999999999999 89999999999975
No 53
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=99.79 E-value=2.7e-19 Score=155.19 Aligned_cols=97 Identities=18% Similarity=0.310 Sum_probs=82.8
Q ss_pred CceeeCHHHHHHHhhcC-CeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChH
Q 030411 47 DVNYVNAEEAKNLIAVE-RYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPE 125 (178)
Q Consensus 47 ~~~~Is~~e~~~~l~~~-~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 125 (178)
.++.|+++++.++++++ +++|||||++.||..||||||+|+|+..+.
T Consensus 5 ~~~~is~~~l~~~l~~~~~~~liDvR~~~e~~~ghIpgAv~ip~~~~~-------------------------------- 52 (539)
T 1yt8_A 5 QIAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRLE-------------------------------- 52 (539)
T ss_dssp -CEEECHHHHHHHHHHTCCBEEEECSCHHHHTTSBCTTCEECCGGGHH--------------------------------
T ss_pred cCcccCHHHHHHHHhCCCCeEEEECCCHHHHhcCcCCCCEECCHHHHH--------------------------------
Confidence 36789999999999754 799999999999999999999999997432
Q ss_pred HHHHHHhcC-CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 126 FVQSVKSQF-SPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 126 ~~~~~~~~~-~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
....... +++++||+||++|.+|..+++.|+..||+||++|+||+.+|++
T Consensus 53 --~~~~~l~~~~~~~iVvyc~~g~~s~~a~~~L~~~G~~~V~~L~GG~~~W~~ 103 (539)
T 1yt8_A 53 --LEIHARVPRRDTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGLSGWRN 103 (539)
T ss_dssp --HHHHHHSCCTTSCEEEECSSSSHHHHHHHHHHHTTCSSEEEETTHHHHHHH
T ss_pred --HHHHhhCCCCCCeEEEEECCCChHHHHHHHHHHcCCCceEEeCCCHHHHHh
Confidence 1111222 4789999999999999999999999999999999999999964
No 54
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=99.78 E-value=7e-19 Score=148.42 Aligned_cols=114 Identities=12% Similarity=0.212 Sum_probs=86.9
Q ss_pred eeeCHHHHHHHhhcCCeEEEeeCChhhh-----------hhccCCCeEEecccccccCCcchhhhhhcccccccccccCC
Q 030411 49 NYVNAEEAKNLIAVERYAVLDVRDNSQY-----------NRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGL 117 (178)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDvR~~~e~-----------~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 117 (178)
..|+++++.+++++++.+|||||++.|| ..||||||+|+|+...... +..+.. .
T Consensus 272 ~~i~~~e~~~~l~~~~~~liDvR~~~e~~G~~~~~~~~~~~GhIpgAi~ip~~~~~~~--------------~~~~~~-~ 336 (423)
T 2wlr_A 272 LMLDMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHAGSDSTH--------------MEDFHN-P 336 (423)
T ss_dssp GEECHHHHHTTTTCSSEEEEECSCHHHHHTSCCSSTTCCCCSEETTCEECCCCSSTTC--------------CGGGBC-T
T ss_pred heecHHHHHHHhcCCCceEEecCchhheeeeccCCCCCCcCCCCCCcccccccccccc--------------HHHHcC-C
Confidence 4699999999988778999999999999 7899999999998621100 000000 0
Q ss_pred CCCCCChHHHHHHH--hcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 118 PFTKQNPEFVQSVK--SQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 118 ~~~~~~~~~~~~~~--~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
.....+++.+.... ..++++++||+||.+|.||..++..|+.+||+||++|+||+.+|..
T Consensus 337 ~~~~~~~~~l~~~~~~~~~~~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~~~W~~ 398 (423)
T 2wlr_A 337 DGTMRSADDITAMWKAWNIKPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGWYEWSS 398 (423)
T ss_dssp TSSBCCHHHHHHHHHTTTCCTTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHHHHHTT
T ss_pred CCcCCCHHHHHHHHHHcCCCCCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccHHHHhc
Confidence 11122333344434 2478899999999999999999999999999999999999999975
No 55
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=99.78 E-value=4.7e-19 Score=137.99 Aligned_cols=93 Identities=23% Similarity=0.295 Sum_probs=77.5
Q ss_pred eeeCHHHHHHHhhcCCeEEEeeCChhhhhh----------ccCCCeEEecccccccCCcchhhhhhcccccccccccCCC
Q 030411 49 NYVNAEEAKNLIAVERYAVLDVRDNSQYNR----------AHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLP 118 (178)
Q Consensus 49 ~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~----------ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 118 (178)
..|+++++.+ +.+|||||++.||.. ||||||+|+|+.++....
T Consensus 121 ~~i~~~e~~~-----~~~liDvR~~~e~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~---------------------- 173 (230)
T 2eg4_A 121 WLLTADEAAR-----HPLLLDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPLELFLSPE---------------------- 173 (230)
T ss_dssp GBCCHHHHHT-----CSCEEECSCHHHHTTSCCCTTSSSCCBCTTCEECCGGGGGCCT----------------------
T ss_pred ceeCHHHHhh-----CCeEEeCCCHHHcCcccCCCCCccCCCCCCcEEcCHHHhCChH----------------------
Confidence 4588888866 678999999999999 999999999998664210
Q ss_pred CCCCChHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 119 FTKQNPEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
+.+. ...++++++||+||.+|.||..++..|+..| +||++|+||+.+|++
T Consensus 174 ------e~~~--~~~~~~~~~iv~~C~~G~rs~~a~~~L~~~G-~~v~~~~Gg~~~W~~ 223 (230)
T 2eg4_A 174 ------GLLE--RLGLQPGQEVGVYCHSGARSAVAFFVLRSLG-VRARNYLGSMHEWLQ 223 (230)
T ss_dssp ------THHH--HHTCCTTCEEEEECSSSHHHHHHHHHHHHTT-CEEEECSSHHHHHHH
T ss_pred ------HHHH--hcCCCCCCCEEEEcCChHHHHHHHHHHHHcC-CCcEEecCcHHHHhh
Confidence 1111 1246789999999999999999999999999 899999999999964
No 56
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=99.78 E-value=3.3e-19 Score=154.65 Aligned_cols=97 Identities=11% Similarity=0.185 Sum_probs=86.2
Q ss_pred cCceeeCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChH
Q 030411 46 ADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPE 125 (178)
Q Consensus 46 ~~~~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 125 (178)
..+..|+++++.+++++++.+|||||++.||..||||||+|+|..++.
T Consensus 374 ~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~-------------------------------- 421 (539)
T 1yt8_A 374 PRADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQLK-------------------------------- 421 (539)
T ss_dssp CCCCEECHHHHHHHTTSTTEEEEECSCHHHHHHCBCTTCEECCGGGHH--------------------------------
T ss_pred CcCCccCHHHHHHHhcCCCeEEEEeCCHHHhhcCcCCCchhCCHHHHH--------------------------------
Confidence 456789999999999878899999999999999999999999987442
Q ss_pred HHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 126 FVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 126 ~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
..+..++++++||+||.+|.||..++..|+..||++|++|+||+.+|++
T Consensus 422 ---~~l~~l~~~~~ivv~C~sG~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~ 470 (539)
T 1yt8_A 422 ---QALERLGTAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSAWVA 470 (539)
T ss_dssp ---HHHHHHCCCSEEEEECSSSHHHHHHHHHHHHHHCSCEEEETTHHHHHHH
T ss_pred ---HHHHhCCCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEeCCcHHHHHh
Confidence 1233457899999999999999999999999999999999999999964
No 57
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=99.76 E-value=1.7e-18 Score=146.07 Aligned_cols=108 Identities=14% Similarity=0.189 Sum_probs=86.9
Q ss_pred eeeCHHHHHHHhh--------cCCeEEEeeC--ChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCC
Q 030411 49 NYVNAEEAKNLIA--------VERYAVLDVR--DNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLP 118 (178)
Q Consensus 49 ~~Is~~e~~~~l~--------~~~~~lIDvR--~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 118 (178)
..++++++.++++ +++.+|||+| ++.||..||||||+|+|+.++.... .
T Consensus 124 ~~i~~~~l~~~~~~~~~~~~~~~~~~liDvR~~~~~e~~~ghIpgA~nip~~~~~~~~---------------------~ 182 (423)
T 2wlr_A 124 QLVYPQWLHDLQQGKEVTAKPAGDWKVIEAAWGAPKLYLISHIPGADYIDTNEVESEP---------------------L 182 (423)
T ss_dssp GEECHHHHHHHHTTCCCTTCCSSCEEEEEEESSSCSHHHHCBCTTCEEEEGGGTEETT---------------------T
T ss_pred cccCHHHHHHHhhccccccccCCCeEEEEecCCCchhhccCcCCCcEEcCHHHhccCC---------------------C
Confidence 5799999998886 3478999999 9999999999999999998663210 1
Q ss_pred CCCCChHHHHHHHh--cCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 119 FTKQNPEFVQSVKS--QFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 119 ~~~~~~~~~~~~~~--~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
...+.++.+...+. .++++++||+||.+|.+|..+++.|+..||++|++|+||+.+|++
T Consensus 183 ~~~~~~~~l~~~~~~~gi~~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~~W~~ 243 (423)
T 2wlr_A 183 WNKVSDEQLKAMLAKHGIRHDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQTWSD 243 (423)
T ss_dssp TEECCHHHHHHHHHHTTCCTTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCCCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHHHHhh
Confidence 11223333444343 368899999999999999999999999999999999999999953
No 58
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=99.75 E-value=3.7e-18 Score=132.92 Aligned_cols=90 Identities=17% Similarity=0.130 Sum_probs=69.6
Q ss_pred CCeEEEeeCChhhhhhccCCCeEEeccc--ccccCCcchhhhhhcccccccccccCCCCCCCChHHHHHHHhcCCCCCeE
Q 030411 63 ERYAVLDVRDNSQYNRAHIKSSYHVPLF--IENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQFSPESKL 140 (178)
Q Consensus 63 ~~~~lIDvR~~~e~~~ghIpgAvnip~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 140 (178)
++++|||||++.||..||||||+|+|+. ++......+. .++++.++.....++.+++|
T Consensus 5 ~~~~iiDvR~~~ey~~ghIpgAi~ip~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~l~~~~~i 64 (230)
T 2eg4_A 5 EDAVLVDTRPRPAYEAGHLPGARHLDLSAPKLRLREEAEL--------------------KALEGGLTELFQTLGLRSPV 64 (230)
T ss_dssp TTCEEEECSCHHHHHHCBCTTCEECCCCSCCCCCCSHHHH--------------------HHHHHHHHHHHHHTTCCSSE
T ss_pred CCEEEEECCChhhHhhCcCCCCEECCccchhcccCCCCCc--------------------CCCHHHHHHHHHhcCCCCEE
Confidence 5789999999999999999999999997 4431110011 11123344445555668999
Q ss_pred EEEcCCCh-hHHHHHHHHHHcCCceEEEecccccccc
Q 030411 141 LVVCQEGL-RSAAAANKLEEAGFQNIACITSGLQTVK 176 (178)
Q Consensus 141 viyC~~g~-rs~~aa~~L~~~G~~~v~~l~GG~~~w~ 176 (178)
|+||.+|. +|..+++.|+ .||+||++|+|| |+
T Consensus 65 vvyc~~g~~~s~~a~~~L~-~G~~~v~~l~GG---W~ 97 (230)
T 2eg4_A 65 VLYDEGLTSRLCRTAFFLG-LGGLEVQLWTEG---WE 97 (230)
T ss_dssp EEECSSSCHHHHHHHHHHH-HTTCCEEEECSS---CG
T ss_pred EEEcCCCCccHHHHHHHHH-cCCceEEEeCCC---Cc
Confidence 99999988 9999999999 999999999999 75
No 59
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}
Probab=99.73 E-value=1.9e-19 Score=153.64 Aligned_cols=87 Identities=28% Similarity=0.479 Sum_probs=0.0
Q ss_pred HHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHHHHHhcCC
Q 030411 56 AKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQFS 135 (178)
Q Consensus 56 ~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (178)
+.+++++++.+|||||+++||..||||||+|+|+.++.+ ....++
T Consensus 379 ~~~~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~-----------------------------------~~~~l~ 423 (466)
T 3r2u_A 379 HSEDITGNESHILDVRNDNEWNNGHLSQAVHVPHGKLLE-----------------------------------TDLPFN 423 (466)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhCCCcEEEEeCCHHHHhcCcCCCCEECCHHHHHH-----------------------------------HHhhCC
Confidence 455566667899999999999999999999999986532 123367
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
++++||+||.+|.||..++..|+..||+||++|+||+.+|++
T Consensus 424 ~~~~iv~~C~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~ 465 (466)
T 3r2u_A 424 KNDVIYVHCQSGIRSSIAIGILEHKGYHNIINVNEGYKDIQL 465 (466)
T ss_dssp ------------------------------------------
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCEEEecChHHHHhh
Confidence 899999999999999999999999999999999999999975
No 60
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=99.72 E-value=6.4e-18 Score=140.62 Aligned_cols=94 Identities=12% Similarity=0.199 Sum_probs=72.4
Q ss_pred cCCeEEEeeCChhhhh-----------hccCCCeEEecccccc--cCCcchhhhhhcccccccccccCCCCCCCChHHHH
Q 030411 62 VERYAVLDVRDNSQYN-----------RAHIKSSYHVPLFIEN--QDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQ 128 (178)
Q Consensus 62 ~~~~~lIDvR~~~e~~-----------~ghIpgAvnip~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (178)
+++.+|||||++.||. .||||||+|+|+.++. ... +. ...+++.+.
T Consensus 172 ~~~~~lIDvR~~~Ef~G~~~~~~~~~~~GhIpGAiniP~~~l~~~~~~--~~-------------------~~~~~~~l~ 230 (373)
T 1okg_A 172 PPQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGD--GK-------------------VLRSEEEIR 230 (373)
T ss_dssp CTTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCGGGGEECCSS--SC-------------------EECCHHHHH
T ss_pred ccCceEEeCCCHHHccccccccccCCcCccCCCcEEecHHHhhccCCC--CC-------------------ccCCHHHHH
Confidence 4578899999999999 8999999999998763 210 00 011223344
Q ss_pred HHHhc----CCC---CCeEEEEcCCChhHHHHHHHHHHcCCceEEEecccccccc
Q 030411 129 SVKSQ----FSP---ESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVK 176 (178)
Q Consensus 129 ~~~~~----~~~---~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~ 176 (178)
..+.. +++ +++||+||.+|.||..++..|+..||+||++|+||+.+|.
T Consensus 231 ~~~~~~~~gi~~~~~d~~ivvyC~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~W~ 285 (373)
T 1okg_A 231 HNIMTVVQGAGDAADLSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWSEYS 285 (373)
T ss_dssp HHHHTTCC-----CCCTTSEEECSSSSTHHHHHHHHHHTTSCCCEECSSHHHHHH
T ss_pred HHHHhhhcCCCcccCCCCEEEECCchHHHHHHHHHHHHcCCCCeeEeCChHHHHh
Confidence 43443 367 8999999999999999999999999999999999999996
No 61
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=99.70 E-value=8.6e-17 Score=131.55 Aligned_cols=126 Identities=15% Similarity=0.164 Sum_probs=90.2
Q ss_pred CCCcccccceeeccCceeeCHHHHHHHhhcC---CeEEEeeC--------C-hhhh-hhccCCCeEEecccccccCCcch
Q 030411 33 SGKSICRRNLKIRADVNYVNAEEAKNLIAVE---RYAVLDVR--------D-NSQY-NRAHIKSSYHVPLFIENQDNDLG 99 (178)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~Is~~e~~~~l~~~---~~~lIDvR--------~-~~e~-~~ghIpgAvnip~~~~~~~~~~~ 99 (178)
.|.++....+...+.++-|||+++.+++..+ .+++||++ + ..|| +++|||||++++++.+.+.
T Consensus 12 ~~~~p~~~~~~sm~~~~LIsp~~l~~ll~~~~~~rvv~lDasw~lP~~~r~~~~E~~~~~HIPGAv~~Dld~~~d~---- 87 (327)
T 3utn_X 12 SGLVPRGSHMASMPLFDLISPKAFVKLVASEKVHRIVPVDATWYLPSWKLDNKVDFLTKPRIPNSIFFDIDAISDK---- 87 (327)
T ss_dssp ------------CCSCEEECHHHHHHHHHHCSSSCEEEEECCCCCGGGCCCHHHHHHHSCBCTTCEECCTTTSSCT----
T ss_pred CCCCCCccccccCccccccCHHHHHHHHhCCCCCcEEEEEecCCCCCCCCCHHHHHHhhCcCCCCeeeChHHhcCC----
Confidence 3444445555555567789999999999643 58899986 2 3466 6799999999998755332
Q ss_pred hhhhhcccccccccccCCCCCCCChHHHHHHHhc--CCCCCeEEEEcCCC-hhHHHHHHHHHHcCCceEEEecccccccc
Q 030411 100 TIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQ--FSPESKLLVVCQEG-LRSAAAANKLEEAGFQNIACITSGLQTVK 176 (178)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iviyC~~g-~rs~~aa~~L~~~G~~~v~~l~GG~~~w~ 176 (178)
....+++.|.++.++..+.. ++++++||+|++.+ ..|.+++|.|+.+|+++|++|+|| .+|+
T Consensus 88 --------------~~~~ph~LP~~~~f~~~l~~lGI~~d~~VVvYD~~~~~~AaR~wW~Lr~~Gh~~V~vLdGg-~aW~ 152 (327)
T 3utn_X 88 --------------KSPYPHMFPTKKVFDDAMSNLGVQKDDILVVYDRVGNFSSPRCAWTLGVMGHPKVYLLNNF-NQYR 152 (327)
T ss_dssp --------------TSSSTTCCCCHHHHHHHHHHTTCCTTCEEEEECSSSSSSHHHHHHHHHHTTCSEEEEESCH-HHHH
T ss_pred --------------CCCCCCCCcCHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHHcCCCceeecccH-HHHH
Confidence 22467888887666665655 78999999999865 468899999999999999999977 8896
Q ss_pred C
Q 030411 177 P 177 (178)
Q Consensus 177 ~ 177 (178)
+
T Consensus 153 ~ 153 (327)
T 3utn_X 153 E 153 (327)
T ss_dssp H
T ss_pred H
Confidence 4
No 62
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=99.69 E-value=9.7e-17 Score=131.24 Aligned_cols=107 Identities=17% Similarity=0.254 Sum_probs=81.9
Q ss_pred eeCHHHHHHHhhcC----CeEEEeeCChhhhh-----------hccCCCeEEecccccccCCcchhhhhhcccccccccc
Q 030411 50 YVNAEEAKNLIAVE----RYAVLDVRDNSQYN-----------RAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLF 114 (178)
Q Consensus 50 ~Is~~e~~~~l~~~----~~~lIDvR~~~e~~-----------~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~ 114 (178)
.++.+++.+.++++ +.+|||+|++++|. .||||||+|+|+.++.+...
T Consensus 185 v~~~~~v~~~v~~~~~~~~~~lvDaRs~~rf~G~~~ep~~~~r~GHIPGA~nlP~~~~ld~~~----------------- 247 (327)
T 3utn_X 185 IVDYEEMFQLVKSGELAKKFNAFDARSLGRFEGTEPEPRSDIPSGHIPGTQPLPYGSLLDPET----------------- 247 (327)
T ss_dssp EECHHHHHHHHHTTCHHHHCEEEECSCHHHHHTSSCCSSSSCCCCBCTTEEECCGGGGSCTTT-----------------
T ss_pred eecHHHHhhhhhcccccccceeeccCccceecccccCccccccCCCCCCCcccChhhccCCCC-----------------
Confidence 58889998888653 57899999999996 38999999999987643211
Q ss_pred cCCCCCCCChH----HHHHHH----hcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEecccccccc
Q 030411 115 FGLPFTKQNPE----FVQSVK----SQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVK 176 (178)
Q Consensus 115 ~~~~~~~~~~~----~~~~~~----~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~ 176 (178)
.......+ .++..+ ..++++++||+||.+|.+|+..+..|+.+||+++.+|+|++.+|.
T Consensus 248 ---~~~~~~~e~l~~~l~~~~~~~~~gid~~k~vI~yCgsGvtA~~~~laL~~lG~~~v~lYdGSWsEW~ 314 (327)
T 3utn_X 248 ---KTYPEAGEAIHATLEKALKDFHCTLDPSKPTICSCGTGVSGVIIKTALELAGVPNVRLYDGSWTEWV 314 (327)
T ss_dssp ---CCCCCTTHHHHHHHHHHHHHTTCCCCTTSCEEEECSSSHHHHHHHHHHHHTTCCSEEEESSHHHHHH
T ss_pred ---CCCCCcHHHHHHHHHHHHHHhhcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeCCCcHHHhc
Confidence 01111111 122211 246789999999999999999999999999999999999999994
No 63
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=99.68 E-value=8.6e-17 Score=137.25 Aligned_cols=97 Identities=14% Similarity=0.239 Sum_probs=80.0
Q ss_pred ccCceeeCHHHHHHHhhcCCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCCh
Q 030411 45 RADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNP 124 (178)
Q Consensus 45 ~~~~~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 124 (178)
.+.++.|+++++.+++++ + +|||+|++.+|..||||||+|+|+..
T Consensus 269 ~~~~~~is~~~l~~~l~~-~-~iiD~R~~~~y~~ghIpGA~~i~~~~--------------------------------- 313 (474)
T 3tp9_A 269 APERVDLPPERVRAWREG-G-VVLDVRPADAFAKRHLAGSLNIPWNK--------------------------------- 313 (474)
T ss_dssp CCEECCCCGGGHHHHHHT-S-EEEECSCHHHHHHSEETTCEECCSST---------------------------------
T ss_pred cCCCceeCHHHHHHHhCC-C-EEEECCChHHHhccCCCCeEEECcch---------------------------------
Confidence 445678999999999986 4 99999999999999999999999862
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccccC
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVKP 177 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~~ 177 (178)
.|.+......+++++||+||+.+. +..+++.|+.+||++|+.+.+|+.+|++
T Consensus 314 ~~~~~~~~l~~~~~~vvvy~~~~~-~~~~~~~L~~~G~~~v~~~l~G~~~W~~ 365 (474)
T 3tp9_A 314 SFVTWAGWLLPADRPIHLLAADAI-APDVIRALRSIGIDDVVDWTDPAAVDRA 365 (474)
T ss_dssp THHHHHHHHCCSSSCEEEECCTTT-HHHHHHHHHHTTCCCEEEEECGGGGTTC
T ss_pred HHHHHHHhcCCCCCeEEEEECCCc-HHHHHHHHHHcCCcceEEecCcHHHHHh
Confidence 122222333478899999999876 5669999999999999986669999975
No 64
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}
Probab=99.40 E-value=5.2e-13 Score=113.85 Aligned_cols=78 Identities=15% Similarity=0.286 Sum_probs=61.4
Q ss_pred CCeEEEeeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHHHHHhcCCCCCeEEE
Q 030411 63 ERYAVLDVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQSVKSQFSPESKLLV 142 (178)
Q Consensus 63 ~~~~lIDvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi 142 (178)
++++|||+|++.+|..||||||+|+|+.. .|.......++++++||+
T Consensus 295 ~~~~ilD~R~~~~y~~gHIpGAv~ip~~~---------------------------------~~~~~~~~~~~~~~~vvl 341 (466)
T 3r2u_A 295 TNRLTFDLRSKEAYHGGHIEGTINIPYDK---------------------------------NFINQIGWYLNYDQEINL 341 (466)
T ss_dssp CCSEEEECSCHHHHHHSCCTTCEECCSST---------------------------------THHHHHTTTCCTTSCEEE
T ss_pred CCeEEEECCCHHHHhhCCCCCcEECCccH---------------------------------HHHHHHHhccCCCCeEEE
Confidence 46799999999999999999999999862 122222333578999999
Q ss_pred EcCCChhHHHHHHHHHHcCCceEEE-ecccccc
Q 030411 143 VCQEGLRSAAAANKLEEAGFQNIAC-ITSGLQT 174 (178)
Q Consensus 143 yC~~g~rs~~aa~~L~~~G~~~v~~-l~GG~~~ 174 (178)
||+ +.++.++++.|+.+||++|+. ++|+.-.
T Consensus 342 y~~-~~~a~~a~~~L~~~G~~~v~~~l~g~~~~ 373 (466)
T 3r2u_A 342 IGD-YHLVSKATHTLQLIGYDDIAGYQLPQSKI 373 (466)
T ss_dssp ESC-HHHHHHHHHHHHTTTCCCEEEEECCC---
T ss_pred EEC-CchHHHHHHHhhhhhcccccccccCcccc
Confidence 999 568999999999999999997 6665443
No 65
>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491}
Probab=98.15 E-value=4.9e-06 Score=60.48 Aligned_cols=85 Identities=13% Similarity=0.225 Sum_probs=54.0
Q ss_pred eeCHHHHHHHhhcCCeEEEeeCChhh------------hhhc-cCCCeEEecccccccCCcchhhhhhcccccccccccC
Q 030411 50 YVNAEEAKNLIAVERYAVLDVRDNSQ------------YNRA-HIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFG 116 (178)
Q Consensus 50 ~Is~~e~~~~l~~~~~~lIDvR~~~e------------~~~g-hIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 116 (178)
.++++++..+.+.+-..|||+|++.| +... +|+|.+|+|+....
T Consensus 29 ~~~~~d~~~L~~~Gi~~IIdlR~~~E~~~~p~~~~~~~~~~~~gi~~~~~iPv~~~~----------------------- 85 (156)
T 2f46_A 29 QLTKADAEQIAQLGIKTIICNRPDREEESQPDFAQIKQWLEQAGVTGFHHQPVTARD----------------------- 85 (156)
T ss_dssp CCCGGGHHHHHHHTCCEEEECSCTTSSTTCCCHHHHHHHHGGGTCCEEEECCCCTTT-----------------------
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCccccCCCcHHHHHHHHHHCCCHhheECccCCCC-----------------------
Confidence 36778877776655568999997655 2333 59989999986320
Q ss_pred CCCCCCChHHHHHHHhcC-CCCCeEEEEcCCChhHHHHHHH-HHHcCC
Q 030411 117 LPFTKQNPEFVQSVKSQF-SPESKLLVVCQEGLRSAAAANK-LEEAGF 162 (178)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~-~~~~~iviyC~~g~rs~~aa~~-L~~~G~ 162 (178)
+..+.+..+...+ +.+.+|++||.+|.|+..++.. |...|.
T Consensus 86 -----~~~~~~~~~~~~l~~~~~pVlvHC~sG~Rs~~l~al~l~~~g~ 128 (156)
T 2f46_A 86 -----IQKHDVETFRQLIGQAEYPVLAYCRTGTRCSLLWGFRRAAEGM 128 (156)
T ss_dssp -----CCHHHHHHHHHHHHTSCSSEEEECSSSHHHHHHHHHHHHHTTC
T ss_pred -----CCHHHHHHHHHHHHhCCCCEEEECCCCCCHHHHHHHHHHHcCC
Confidence 1122233323322 2478999999999998754433 344565
No 66
>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A
Probab=95.28 E-value=0.1 Score=36.37 Aligned_cols=88 Identities=15% Similarity=0.131 Sum_probs=45.7
Q ss_pred CHHHHHHHhhcCCeEEEeeCChhhhhhccCCC--eEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHHH
Q 030411 52 NAEEAKNLIAVERYAVLDVRDNSQYNRAHIKS--SYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQS 129 (178)
Q Consensus 52 s~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpg--Avnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (178)
+++++..+.+.+=..|||+|++.+......+| -+++|+.+.... +...+ .++++.
T Consensus 24 ~~~~~~~L~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~----------------------~~~~~~ 80 (150)
T 4erc_A 24 LPAHYQFLLDLGVRHLVSLTERGPPHSDSCPGLTLHRLRIPDFCPP-APDQI----------------------DRFVQI 80 (150)
T ss_dssp SHHHHHHHHHTTEEEEEECSSSCCTTGGGCTTSEEEECCCCTTSCC-CHHHH----------------------HHHHHH
T ss_pred CHHHHHHHHHCCCCEEEEcCCCCCCcccccCCceEEEEecCCCCCC-CHHHH----------------------HHHHHH
Confidence 35555555444445799999976544444444 345565432110 00000 122222
Q ss_pred HHhcCCCCCeEEEEcCCCh-hHH-HHHH-HHHHcCC
Q 030411 130 VKSQFSPESKLLVVCQEGL-RSA-AAAN-KLEEAGF 162 (178)
Q Consensus 130 ~~~~~~~~~~iviyC~~g~-rs~-~aa~-~L~~~G~ 162 (178)
.......+.+|+++|..|. |+. .++. .+...|.
T Consensus 81 i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~~~ 116 (150)
T 4erc_A 81 VDEANARGEAVGVHCALGFGRTGTMLACYLVKERGL 116 (150)
T ss_dssp HHHHHHTTCEEEEECSSSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHcCC
Confidence 2222345789999999875 766 3333 3444565
No 67
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=94.44 E-value=0.0053 Score=45.11 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=23.2
Q ss_pred eEEEeeCChhhhhhccCCCeEEeccccccc
Q 030411 65 YAVLDVRDNSQYNRAHIKSSYHVPLFIENQ 94 (178)
Q Consensus 65 ~~lIDvR~~~e~~~ghIpgAvnip~~~~~~ 94 (178)
.++||||.+.||. |||+|+|...++.
T Consensus 122 ~~liDvRe~~E~~----pgA~~iprg~lE~ 147 (168)
T 1v8c_A 122 GAVVRFREVEPLK----VGSLSIPQLRVEV 147 (168)
T ss_dssp TEEEEEEEEEEEE----ETTEEEEEEEEEE
T ss_pred eEEEECCChhhcC----CCCEEcChhHHHH
Confidence 4899999999999 9999999987754
No 68
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A*
Probab=94.19 E-value=0.18 Score=35.40 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=19.3
Q ss_pred CCCCeEEEEcCCCh-hHHHH--HHHHHHcCC
Q 030411 135 SPESKLLVVCQEGL-RSAAA--ANKLEEAGF 162 (178)
Q Consensus 135 ~~~~~iviyC~~g~-rs~~a--a~~L~~~G~ 162 (178)
..+.+|+++|..|. ||..+ +..+...|.
T Consensus 87 ~~~~~vlVHC~~G~~Rsg~~~~a~l~~~~~~ 117 (157)
T 3rgo_A 87 ALGQCVYVHCKAGRSRSATMVAAYLIQVHNW 117 (157)
T ss_dssp HTTCEEEEESSSSSSHHHHHHHHHHHHHHTC
T ss_pred HCCCEEEEECCCCCChHHHHHHHHHHHHcCC
Confidence 45679999999876 77744 344454565
No 69
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens}
Probab=93.24 E-value=0.53 Score=32.53 Aligned_cols=88 Identities=15% Similarity=0.125 Sum_probs=43.8
Q ss_pred CHHHHHHHhhcCCeEEEeeCChhhhhhccCCC--eEEecccccccCCcchhhhhhcccccccccccCCCCCCCChHHHHH
Q 030411 52 NAEEAKNLIAVERYAVLDVRDNSQYNRAHIKS--SYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPEFVQS 129 (178)
Q Consensus 52 s~~e~~~~l~~~~~~lIDvR~~~e~~~ghIpg--Avnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (178)
+.+++..+.+.+=..|||+|++.|+....+++ -+++|+.+.... +...+ .++++.
T Consensus 25 ~~~~~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~~~~d~~~p-~~~~~----------------------~~~~~~ 81 (151)
T 2img_A 25 LPAHYQFLLDLGVRHLVSLTERGPPHSDSCPGLTLHRLRIPDFCPP-APDQI----------------------DRFVQI 81 (151)
T ss_dssp SHHHHHHHHHTTEEEEEECSSSCCTTGGGCTTSEEEECCCCTTCCC-CHHHH----------------------HHHHHH
T ss_pred cHHHHHHHHHCCCCEEEECCCCCCCCHHHHhhCCeEEEeCCCCCCC-CHHHH----------------------HHHHHH
Confidence 34444444443445799999876654333332 445665432110 00000 122322
Q ss_pred HHhcCCCCCeEEEEcCCCh-hHHH-HHHHHHHc-CC
Q 030411 130 VKSQFSPESKLLVVCQEGL-RSAA-AANKLEEA-GF 162 (178)
Q Consensus 130 ~~~~~~~~~~iviyC~~g~-rs~~-aa~~L~~~-G~ 162 (178)
....+..+.+|+++|..|. |+.. ++..|... |.
T Consensus 82 i~~~~~~~~~vlVHC~aG~~Rsg~~~~~~l~~~~~~ 117 (151)
T 2img_A 82 VDEANARGEAVGVHCALGFGRTGTMLACYLVKERGL 117 (151)
T ss_dssp HHHHHHTTCEEEEECSSSSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHhCCCcEEEECCCCCChHHHHHHHHHHHHhCc
Confidence 2222345789999999774 6553 33444433 65
No 70
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A
Probab=92.61 E-value=0.33 Score=33.93 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=19.5
Q ss_pred CCCeEEEEcCCCh-hHHH-HHHHHHHcCCc
Q 030411 136 PESKLLVVCQEGL-RSAA-AANKLEEAGFQ 163 (178)
Q Consensus 136 ~~~~iviyC~~g~-rs~~-aa~~L~~~G~~ 163 (178)
.+.+|+++|..|. |+.. ++.+|...|.+
T Consensus 91 ~~~~vlvHC~aG~~RTg~~~a~~l~~~g~~ 120 (151)
T 1xri_A 91 KNHPVLIHCKRGKHRTGCLVGCLRKLQKWC 120 (151)
T ss_dssp GGCSEEEECSSSSSHHHHHHHHHHHHTTBC
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 4679999999885 7664 44455666753
No 71
>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens}
Probab=92.43 E-value=0.5 Score=32.84 Aligned_cols=28 Identities=39% Similarity=0.446 Sum_probs=19.8
Q ss_pred CCCCeEEEEcCCC-hhHHH--HHHHHHHcCC
Q 030411 135 SPESKLLVVCQEG-LRSAA--AANKLEEAGF 162 (178)
Q Consensus 135 ~~~~~iviyC~~g-~rs~~--aa~~L~~~G~ 162 (178)
..+.+|+++|..| .||.. ++..+...|.
T Consensus 79 ~~~~~VlVHC~~G~~RS~~~v~ayLm~~~~~ 109 (145)
T 2nt2_A 79 KHGSKCLVHSKMGVSRSASTVIAYAMKEYGW 109 (145)
T ss_dssp HTTCEEEEECSSSSSHHHHHHHHHHHHHHCC
T ss_pred HcCCeEEEECCCCCchHHHHHHHHHHHHhCC
Confidence 3578999999988 68763 3555565665
No 72
>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus}
Probab=91.99 E-value=0.63 Score=33.05 Aligned_cols=28 Identities=36% Similarity=0.503 Sum_probs=20.0
Q ss_pred CCCCeEEEEcCCC-hhHHHH--HHHHHHcCC
Q 030411 135 SPESKLLVVCQEG-LRSAAA--ANKLEEAGF 162 (178)
Q Consensus 135 ~~~~~iviyC~~g-~rs~~a--a~~L~~~G~ 162 (178)
..+.+|+++|..| .||..+ +..+...|.
T Consensus 87 ~~~~~VlVHC~aG~~RSg~~~~ayLm~~~~~ 117 (164)
T 2hcm_A 87 RDGGSCLVYCKNGRSRSAAVCTAYLMRHRGH 117 (164)
T ss_dssp HTTCEEEEEESSSSHHHHHHHHHHHHHHSCC
T ss_pred HcCCEEEEECCCCCchHHHHHHHHHHHHhCC
Confidence 3578999999988 677643 455666675
No 73
>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics, phosphatase, PSI-2, protein structure initiative; 1.60A {Homo sapiens}
Probab=91.35 E-value=1.7 Score=30.24 Aligned_cols=28 Identities=39% Similarity=0.405 Sum_probs=19.3
Q ss_pred CCCCeEEEEcCCC-hhHHH-H-HHHHHHcCC
Q 030411 135 SPESKLLVVCQEG-LRSAA-A-ANKLEEAGF 162 (178)
Q Consensus 135 ~~~~~iviyC~~g-~rs~~-a-a~~L~~~G~ 162 (178)
..+.+|+++|..| .||.. + +..+...|.
T Consensus 88 ~~~~~vlvHC~aG~~RS~~~~~ayl~~~~~~ 118 (154)
T 2r0b_A 88 QMGGKVLVHGNAGISRSAAFVIAYIMETFGM 118 (154)
T ss_dssp HTTCCEEEECSSSSSHHHHHHHHHHHHHHTC
T ss_pred hcCCCEEEEcCCCCChHHHHHHHHHHHHcCC
Confidence 3578999999988 67774 3 344455665
No 74
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens}
Probab=91.09 E-value=1.1 Score=31.62 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=19.4
Q ss_pred CCCCeEEEEcCCC-hhHHH--HHHHHHHcCC
Q 030411 135 SPESKLLVVCQEG-LRSAA--AANKLEEAGF 162 (178)
Q Consensus 135 ~~~~~iviyC~~g-~rs~~--aa~~L~~~G~ 162 (178)
..+.+|+++|..| .||.. ++..+...|.
T Consensus 82 ~~~~~VlVHC~aG~~RSg~~~~aylm~~~~~ 112 (160)
T 1yz4_A 82 LNGGNCLVHSFAGISRSTTIVTAYVMTVTGL 112 (160)
T ss_dssp HTTCCEEEEETTSSSHHHHHHHHHHHHHHCC
T ss_pred HcCCeEEEECCCCCchHHHHHHHHHHHHcCC
Confidence 3578899999988 67763 3444455665
No 75
>1ywf_A Phosphotyrosine protein phosphatase PTPB; four stranded parallel beta sheet with flanking helices, structural genomics, PSI; 1.71A {Mycobacterium tuberculosis} SCOP: c.45.1.5 PDB: 2oz5_A*
Probab=90.98 E-value=0.5 Score=37.45 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=30.8
Q ss_pred ccCceeeCHHHHHHHhhcCCeEEEeeCChhhhhhc----cCCCe--EEecccc
Q 030411 45 RADVNYVNAEEAKNLIAVERYAVLDVRDNSQYNRA----HIKSS--YHVPLFI 91 (178)
Q Consensus 45 ~~~~~~Is~~e~~~~l~~~~~~lIDvR~~~e~~~g----hIpgA--vnip~~~ 91 (178)
.+....++++++..+.+-+=-.|||.|++.|.... .++|. +++|+..
T Consensus 50 S~~l~~lt~~d~~~L~~lGI~tVIDLR~~~E~~~~~pd~~~~Gi~~~~iPi~~ 102 (296)
T 1ywf_A 50 SSELSRLDDAGRATLRRLGITDVADLRSSREVARRGPGRVPDGIDVHLLPFPD 102 (296)
T ss_dssp ESCCTTCCHHHHHHHHHHTCCEEEECCCHHHHHHHCSCCCCTTCEEEECCCCC
T ss_pred cCCcccCCHHHHHHHHhCCCCEEEECcChhhhhccCCCCCCCCCEEEEecCcc
Confidence 44556688988877665455579999998885432 23443 4667653
No 76
>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens}
Probab=90.44 E-value=1.1 Score=31.84 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=19.3
Q ss_pred CCCCeEEEEcCCC-hhHHH--HHHHHHHcCC
Q 030411 135 SPESKLLVVCQEG-LRSAA--AANKLEEAGF 162 (178)
Q Consensus 135 ~~~~~iviyC~~g-~rs~~--aa~~L~~~G~ 162 (178)
..+.+|+++|..| .||.. ++..+...|.
T Consensus 81 ~~~~~VlVHC~aG~~RSg~~~~ayLm~~~~~ 111 (165)
T 1wrm_A 81 LRGESCLVHCLAGVSRSVTLVIAYIMTVTDF 111 (165)
T ss_dssp HTTCEEEEECSSSSSHHHHHHHHHHHHTSSC
T ss_pred HCCCeEEEECCCCCChhHHHHHHHHHHHcCC
Confidence 4578999999987 67775 3444455564
No 77
>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein, structural genomics, NPPSFA, project on protein structural and functional analyses; 1.67A {Homo sapiens}
Probab=90.08 E-value=1.3 Score=30.70 Aligned_cols=27 Identities=37% Similarity=0.438 Sum_probs=19.3
Q ss_pred CCCeEEEEcCCC-hhHH-H-HHHHHHHcCC
Q 030411 136 PESKLLVVCQEG-LRSA-A-AANKLEEAGF 162 (178)
Q Consensus 136 ~~~~iviyC~~g-~rs~-~-aa~~L~~~G~ 162 (178)
.+.+|+++|..| .||. . ++..+...|.
T Consensus 84 ~~~~vlVHC~aG~~RSg~~~~ayl~~~~~~ 113 (151)
T 2e0t_A 84 PGGKILVHCAVGVSRSATLVLAYLMLYHHL 113 (151)
T ss_dssp TTCCEEEECSSSSHHHHHHHHHHHHHHSCC
T ss_pred CCCcEEEECCCCCChHHHHHHHHHHHHcCC
Confidence 578999999988 6776 3 3445566665
No 78
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1m3g_A
Probab=89.48 E-value=1.7 Score=29.92 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=18.5
Q ss_pred CCCCeEEEEcCCCh-hHH-H-HHHHHHHcCC
Q 030411 135 SPESKLLVVCQEGL-RSA-A-AANKLEEAGF 162 (178)
Q Consensus 135 ~~~~~iviyC~~g~-rs~-~-aa~~L~~~G~ 162 (178)
..+.+|+|+|..|. ||. . ++..+...|.
T Consensus 79 ~~~~~VlVHC~~G~~RS~~~~~aylm~~~~~ 109 (144)
T 3ezz_A 79 DCRGRVLVHSQAGISRSATICLAYLMMKKRV 109 (144)
T ss_dssp HTTCCEEEEESSSSSHHHHHHHHHHHHHHTC
T ss_pred hcCCeEEEECCCCCChhHHHHHHHHHHHcCC
Confidence 35679999999875 765 3 3444455665
No 79
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich, hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB: 1fq1_A*
Probab=89.25 E-value=2.4 Score=31.36 Aligned_cols=26 Identities=35% Similarity=0.263 Sum_probs=17.3
Q ss_pred CCCCCeEEEEcCCCh-hHH-HHHHHHHH
Q 030411 134 FSPESKLLVVCQEGL-RSA-AAANKLEE 159 (178)
Q Consensus 134 ~~~~~~iviyC~~g~-rs~-~aa~~L~~ 159 (178)
+..+.+|+|+|..|. |+. .++.+|..
T Consensus 130 ~~~~~~VlVHC~aG~gRTg~~~a~~L~~ 157 (212)
T 1fpz_A 130 LKNYRKTLIHSYGGLGRSCLVAACLLLY 157 (212)
T ss_dssp HHTTCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HhCCCCEEEECCCCCCHHHHHHHHHHHH
Confidence 345789999999775 655 44445554
No 80
>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure, hydrolase; HET: EPE; 2.00A {Homo sapiens}
Probab=89.13 E-value=1.9 Score=31.36 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=19.9
Q ss_pred CCCCeEEEEcCCC-hhHHH--HHHHHHHcCC
Q 030411 135 SPESKLLVVCQEG-LRSAA--AANKLEEAGF 162 (178)
Q Consensus 135 ~~~~~iviyC~~g-~rs~~--aa~~L~~~G~ 162 (178)
..+.+|+++|..| .||.. ++..+...|.
T Consensus 95 ~~~~~VLVHC~aG~sRS~~vv~ayLm~~~~~ 125 (188)
T 2esb_A 95 MKQGRTLLHCAAGVSRSAALCLAYLMKYHAM 125 (188)
T ss_dssp HTTCCEEEECSSSSSHHHHHHHHHHHHHSCC
T ss_pred HcCCEEEEECCCCCchHHHHHHHHHHHHcCC
Confidence 3578999999988 67764 3455566665
No 81
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens}
Probab=89.01 E-value=1.9 Score=29.83 Aligned_cols=28 Identities=32% Similarity=0.438 Sum_probs=19.5
Q ss_pred CCCCeEEEEcCCC-hhHHHH--HHHHHHcCC
Q 030411 135 SPESKLLVVCQEG-LRSAAA--ANKLEEAGF 162 (178)
Q Consensus 135 ~~~~~iviyC~~g-~rs~~a--a~~L~~~G~ 162 (178)
..+.+|+++|..| .||..+ +..+...|.
T Consensus 81 ~~~~~VlVHC~~G~~RSg~~~~ayl~~~~~~ 111 (149)
T 1zzw_A 81 QCGKGLLIHCQAGVSRSATIVIAYLMKHTRM 111 (149)
T ss_dssp HTTCEEEEECSSSSSHHHHHHHHHHHHHSCC
T ss_pred HcCCeEEEECCCCCCHHHHHHHHHHHHHcCC
Confidence 3578999999988 677753 344555665
No 82
>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein dual-specificity phosphatase, inhibitor; HET: STT; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1vhr_A* 1j4x_A*
Probab=88.26 E-value=2.2 Score=30.63 Aligned_cols=26 Identities=27% Similarity=0.521 Sum_probs=18.0
Q ss_pred CCeEEEEcCCCh-hHHH-HHH-HHHHcCC
Q 030411 137 ESKLLVVCQEGL-RSAA-AAN-KLEEAGF 162 (178)
Q Consensus 137 ~~~iviyC~~g~-rs~~-aa~-~L~~~G~ 162 (178)
+.+|+|+|..|. ||.. ++. .+...|.
T Consensus 115 ~~~VlVHC~~G~~RSg~~v~ayLm~~~~~ 143 (183)
T 3f81_A 115 NGRVLVHCREGYSRSPTLVIAYLMMRQKM 143 (183)
T ss_dssp TCCEEEECSSSSSHHHHHHHHHHHHHHCC
T ss_pred CCeEEEECCCCcchHHHHHHHHHHHHhCC
Confidence 679999999875 7664 333 4455665
No 83
>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase, dual specifici phosphatase; 1.88A {Homo sapiens}
Probab=88.20 E-value=2 Score=31.35 Aligned_cols=28 Identities=29% Similarity=0.326 Sum_probs=19.6
Q ss_pred CCCCeEEEEcCCC-hhHHH--HHHHHHHcCC
Q 030411 135 SPESKLLVVCQEG-LRSAA--AANKLEEAGF 162 (178)
Q Consensus 135 ~~~~~iviyC~~g-~rs~~--aa~~L~~~G~ 162 (178)
..+.+|+++|..| .||.. ++..+...|.
T Consensus 101 ~~~~~VlVHC~aG~~RSgtvv~ayLm~~~~~ 131 (190)
T 2wgp_A 101 RKHGATLVHCAAGVSRSATLCIAYLMKFHNV 131 (190)
T ss_dssp HTTCCEEEECSSSSSHHHHHHHHHHHHHHCC
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHHHcCC
Confidence 3578899999987 67763 3455666665
No 84
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}
Probab=87.99 E-value=3 Score=28.69 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=18.6
Q ss_pred CCCCeEEEEcCCCh-hHHH--HHHHHHHcCC
Q 030411 135 SPESKLLVVCQEGL-RSAA--AANKLEEAGF 162 (178)
Q Consensus 135 ~~~~~iviyC~~g~-rs~~--aa~~L~~~G~ 162 (178)
..+.+|+|+|..|. ||.. ++..+...|.
T Consensus 79 ~~~~~VlVHC~~G~sRS~~~v~ayLm~~~~~ 109 (144)
T 3s4e_A 79 RKDGVVLVHSNAGVSRAAAIVIGFLMNSEQT 109 (144)
T ss_dssp HTTCCEEEECSSSSSHHHHHHHHHHHHHHCC
T ss_pred HcCCeEEEEcCCCCchHHHHHHHHHHHHcCC
Confidence 35778999999875 7653 3444555665
No 85
>2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual specificity phosphatase, DUSP13, testis and skeletal muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A
Probab=87.13 E-value=6.2 Score=29.04 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=19.0
Q ss_pred CCCeEEEEcCCC-hhHHH--HHHHHHHcCC
Q 030411 136 PESKLLVVCQEG-LRSAA--AANKLEEAGF 162 (178)
Q Consensus 136 ~~~~iviyC~~g-~rs~~--aa~~L~~~G~ 162 (178)
.+.+|+|+|..| .||.. ++..+...|.
T Consensus 130 ~~~~VLVHC~aG~sRS~tvv~aYLm~~~~~ 159 (205)
T 2pq5_A 130 PQGRVLVHCAMGVSRSATLVLAFLMIYENM 159 (205)
T ss_dssp TTCCEEEECSSSSSHHHHHHHHHHHHHSCC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHcCC
Confidence 577899999987 57663 3445566665
No 86
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=86.76 E-value=1.3 Score=32.17 Aligned_cols=46 Identities=13% Similarity=0.145 Sum_probs=32.8
Q ss_pred HHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 127 VQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 127 ~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
+...+....++.++||+|++-..+..++..|...|+. +..+.|++.
T Consensus 36 L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~-~~~lhg~~~ 81 (185)
T 2jgn_A 36 LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYA-CTSIHGDRS 81 (185)
T ss_dssp HHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCC-EEEEC----
T ss_pred HHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCc-eEEEeCCCC
Confidence 3344444556778999999988888999999999986 888888875
No 87
>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual specific phosphatase, COMP with peptide, hydrolase; 2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A
Probab=86.19 E-value=6.4 Score=28.43 Aligned_cols=28 Identities=36% Similarity=0.542 Sum_probs=19.0
Q ss_pred CCCCeEEEEcCCCh-hHH-HHHHHHHHcCC
Q 030411 135 SPESKLLVVCQEGL-RSA-AAANKLEEAGF 162 (178)
Q Consensus 135 ~~~~~iviyC~~g~-rs~-~aa~~L~~~G~ 162 (178)
.++.+|+|+|..|. |+. .++..|...|.
T Consensus 115 ~~~~~VlVHC~aG~gRSg~~va~~L~~~g~ 144 (189)
T 3rz2_A 115 EPGCCIAVHCVAGLGRAPVLVALALIEGGM 144 (189)
T ss_dssp STTCEEEEECSSSSTTHHHHHHHHHHTTTC
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 46789999999764 555 45555555565
No 88
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase; 2.70A {Homo sapiens}
Probab=85.50 E-value=3.9 Score=30.56 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=19.6
Q ss_pred CCCCeEEEEcCCC-hhHHH--HHHHHHHcCC
Q 030411 135 SPESKLLVVCQEG-LRSAA--AANKLEEAGF 162 (178)
Q Consensus 135 ~~~~~iviyC~~g-~rs~~--aa~~L~~~G~ 162 (178)
..+.+|+|+|..| .||.. ++..+...|.
T Consensus 81 ~~~~~VLVHC~aG~sRSgtvv~AYLm~~~g~ 111 (211)
T 2g6z_A 81 EKGGKVLVHSEAGISRSPTICMAYLMKTKQF 111 (211)
T ss_dssp HTTCCEEEEESSSSSHHHHHHHHHHHHHHCC
T ss_pred hcCCeEEEECCCCCCcHHHHHHHHHHHHcCC
Confidence 4578999999987 57763 4455555665
No 89
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics, medical structural genomics of pathogen protozoa, MSGPP, unknown function; HET: MSE EPE; 2.30A {Leishmania major}
Probab=85.13 E-value=6.4 Score=27.29 Aligned_cols=27 Identities=33% Similarity=0.445 Sum_probs=17.8
Q ss_pred CCCeEEEEcCCCh-hHH-HHHHHHHHc-CC
Q 030411 136 PESKLLVVCQEGL-RSA-AAANKLEEA-GF 162 (178)
Q Consensus 136 ~~~~iviyC~~g~-rs~-~aa~~L~~~-G~ 162 (178)
++.+|+|+|..|. |+. .++..|... |.
T Consensus 108 ~~~~vlVHC~aG~~RTg~~~a~~L~~~~~~ 137 (167)
T 3s4o_A 108 PPPTIGVHCVAGLGRAPILVALALVEYGNV 137 (167)
T ss_dssp CCCEEEEECSSSSSHHHHHHHHHHHHTTCC
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 4789999999764 554 444455554 65
No 90
>2q05_A Late protein H1, dual specificity protein phosphatase; structural genomics, APC7320, P protein structure initiative; HET: MSE; 2.57A {Vaccinia virus WR}
Probab=84.88 E-value=2.8 Score=30.75 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=18.3
Q ss_pred CCCCeEEEEcCCC-hhHHHH--HHHHHHcCCc
Q 030411 135 SPESKLLVVCQEG-LRSAAA--ANKLEEAGFQ 163 (178)
Q Consensus 135 ~~~~~iviyC~~g-~rs~~a--a~~L~~~G~~ 163 (178)
..+.+|+++|..| .|+..+ +..+...|.+
T Consensus 123 ~~~~~VlVHC~aG~~RSg~~v~~yL~~~~~~~ 154 (195)
T 2q05_A 123 QRNEPVLVHCAAGVNRSGAMILAYLMSKNKES 154 (195)
T ss_dssp HTTCCEEEECSSSSSHHHHHHHHHHHHHCCSS
T ss_pred HcCCcEEEEcCCCCChHHHHHHHHHHHHhCCC
Confidence 3567899999987 576643 3333445543
No 91
>3cm3_A Late protein H1, dual specificity protein phosphatase; dual-specificity phosphatase, VH1, hydrolase; 1.32A {Vaccinia virus} PDB: 2rf6_A 2p4d_A
Probab=83.70 E-value=5.8 Score=28.25 Aligned_cols=28 Identities=25% Similarity=0.203 Sum_probs=18.4
Q ss_pred CCCeEEEEcCCC-hhHHH--HHHHHHHcCCc
Q 030411 136 PESKLLVVCQEG-LRSAA--AANKLEEAGFQ 163 (178)
Q Consensus 136 ~~~~iviyC~~g-~rs~~--aa~~L~~~G~~ 163 (178)
.+.+|+|+|..| .||.. ++..+...|.+
T Consensus 107 ~~~~VlVHC~aG~~RSg~~v~aylm~~~~~~ 137 (176)
T 3cm3_A 107 RNEPVLVHSAAGVNRSGAMILAYLMSKNKES 137 (176)
T ss_dssp HTCCEEEECSSSSSHHHHHHHHHHHHHCCSS
T ss_pred CCCcEEEECCcCCCHHHHHHHHHHHHHhCCC
Confidence 467899999987 56653 34445555553
No 92
>2y96_A Dual specificity phosphatase DUPD1; hydrolase; 2.38A {Homo sapiens}
Probab=83.62 E-value=8.1 Score=28.82 Aligned_cols=28 Identities=36% Similarity=0.426 Sum_probs=19.5
Q ss_pred CCCCeEEEEcCCC-hhHHH--HHHHHHHcCC
Q 030411 135 SPESKLLVVCQEG-LRSAA--AANKLEEAGF 162 (178)
Q Consensus 135 ~~~~~iviyC~~g-~rs~~--aa~~L~~~G~ 162 (178)
..+.+|+|+|..| .||.. ++..+...|.
T Consensus 137 ~~~~~VLVHC~aG~sRS~tvv~aYLm~~~~~ 167 (219)
T 2y96_A 137 DDHSKILVHCVMGRSRSATLVLAYLMIHKDM 167 (219)
T ss_dssp STTCCEEEECSSSSSHHHHHHHHHHHHHSCC
T ss_pred ccCCeEEEECCCCCCHHHHHHHHHHHHHcCC
Confidence 4577999999987 57664 3445566665
No 93
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=80.66 E-value=3.5 Score=29.22 Aligned_cols=37 Identities=14% Similarity=0.291 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
+..+++|+|++-..+..++..|...|+. +..+.|++.
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~-~~~~~g~~~ 69 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQDGHQ-VSLLSGELT 69 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTTTCC-EEEECSSCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCc-EEEEeCCCC
Confidence 4568999999988888999999999985 888888864
No 94
>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine phosphatase IVA1...; structural genomics, NYSGXRC, unknown function, PSI; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A
Probab=78.81 E-value=13 Score=25.37 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=18.7
Q ss_pred CCCCeEEEEcCCC-hhHH-HHHHHHHHcCC
Q 030411 135 SPESKLLVVCQEG-LRSA-AAANKLEEAGF 162 (178)
Q Consensus 135 ~~~~~iviyC~~g-~rs~-~aa~~L~~~G~ 162 (178)
+++.+|+++|..| .|+. .++..|...|.
T Consensus 94 ~~~~~vlVHC~aG~~Rtg~~~a~~l~~~~~ 123 (159)
T 1rxd_A 94 EPGCCIAVHCVAGLGRAPVLVALALIEGGM 123 (159)
T ss_dssp STTCEEEEECSSSSTTHHHHHHHHHHHTTC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 3568999999977 4655 44445555565
No 95
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=78.66 E-value=2.7 Score=29.50 Aligned_cols=37 Identities=14% Similarity=0.377 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
+..+++|+|++-..+..++..|...|+. +..+.|++.
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~-~~~~hg~~~ 70 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDLGYP-CDKIHGGMI 70 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCC-EEEECTTSC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCc-EEEEeCCCC
Confidence 4567999999988888999999999986 888888764
No 96
>1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle, hydrolase; HET: SEP; 2.20A {Homo sapiens} SCOP: c.45.1.1 c.45.1.1 PDB: 1ohc_A 1ohd_A
Probab=78.44 E-value=13 Score=29.85 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=18.2
Q ss_pred CCCCeEEEEcCCC-hhHHH-HHHHHHH-cCC
Q 030411 135 SPESKLLVVCQEG-LRSAA-AANKLEE-AGF 162 (178)
Q Consensus 135 ~~~~~iviyC~~g-~rs~~-aa~~L~~-~G~ 162 (178)
..+.+|+|+|..| .|+.. ++..|.. .|.
T Consensus 267 ~~~~~VLVHC~aG~gRTGtvvaayLm~~~g~ 297 (348)
T 1ohe_A 267 NAEGAIAVHSKAGLGRTGTLIACYIMKHYRM 297 (348)
T ss_dssp SCSSEEEEECSSSSHHHHHHHHHHHHHHHCC
T ss_pred hCCCcEEEECCCCCChHHHHHHHHHHHHcCC
Confidence 4678999999987 56553 3333433 565
No 97
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=77.99 E-value=4.8 Score=28.57 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
+..+++|+|++-..+..++..|...|+. +..+.|++.
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~-~~~~hg~~~ 66 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQNFP-AIAIHRGMP 66 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCC-EEEECTTSC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCC-EEEEECCCC
Confidence 4568999999988888999999999986 788888764
No 98
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=77.49 E-value=5.1 Score=28.05 Aligned_cols=37 Identities=19% Similarity=0.387 Sum_probs=31.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
+..+++|+|++-..+...+..|...|+. +..+.|++.
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 65 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKFT-VSAIYSDLP 65 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTCC-EEEECTTSC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCC-EEEEECCCC
Confidence 4567999999988888999999999985 888888764
No 99
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=74.08 E-value=6.6 Score=31.37 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
+.+.........+.+++|+|++-..+..++..|...|+. +..+.|++.
T Consensus 264 ~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~-~~~~h~~~~ 311 (417)
T 2i4i_A 264 SFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYA-CTSIHGDRS 311 (417)
T ss_dssp HHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCC-EEEECTTSC
T ss_pred HHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCC-eeEecCCCC
Confidence 344445555566788999999988888999999999985 888888764
No 100
>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine phosphatase, P-loop, hydrolase; HET: PO4; 1.50A {Autographa californicanucleopolyhedrovirus}
Probab=73.78 E-value=6.6 Score=27.66 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=17.8
Q ss_pred CCCeEEEEcCCCh-hHH-HHHHHHHH-cCC
Q 030411 136 PESKLLVVCQEGL-RSA-AAANKLEE-AGF 162 (178)
Q Consensus 136 ~~~~iviyC~~g~-rs~-~aa~~L~~-~G~ 162 (178)
.+.+|+|+|..|. |+. .++.+|.. .|+
T Consensus 112 ~~~~vlVHC~aG~~RTg~~va~~L~~~~~~ 141 (169)
T 1yn9_A 112 PGMLVGVHCTHGINRTGYMVCRYLMHTLGI 141 (169)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHHHHHHCC
T ss_pred CCCcEEEECCCCCChHHHHHHHHHHHHhCC
Confidence 5789999999764 555 34444443 676
No 101
>2j16_A SDP-1, tyrosine-protein phosphatase YIL113W; hydrolase, hypothetical protein; 2.7A {Saccharomyces cerevisiae} PDB: 2j17_A* 2j16_B
Probab=73.70 E-value=18 Score=26.10 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=19.0
Q ss_pred CCCCeEEEEcCCC-hhHHH--HHHHHHHcCC
Q 030411 135 SPESKLLVVCQEG-LRSAA--AANKLEEAGF 162 (178)
Q Consensus 135 ~~~~~iviyC~~g-~rs~~--aa~~L~~~G~ 162 (178)
..+.+|+|+|..| .||.. +|..+...|.
T Consensus 115 ~~g~~VLVHC~~G~sRS~tvv~ayLm~~~~~ 145 (182)
T 2j16_A 115 TKREKILIHAQCGLSRSATLIIAYIMKYHNL 145 (182)
T ss_dssp HTTCCEEEEESSCCSHHHHHHHHHHHHHTTC
T ss_pred hcCCeEEEECCCCCChHHHHHHHHHHHHcCC
Confidence 4678999999977 46663 4445555565
No 102
>2hxp_A Dual specificity protein phosphatase 9; human phosphatase, structural genomics, PSI-2, protein structure initiative; 1.83A {Homo sapiens} PDB: 3lj8_A 1mkp_A
Probab=71.89 E-value=4.1 Score=28.45 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=19.0
Q ss_pred CCCCeEEEEcCCC-hhHHHH--HHHHHHcCC
Q 030411 135 SPESKLLVVCQEG-LRSAAA--ANKLEEAGF 162 (178)
Q Consensus 135 ~~~~~iviyC~~g-~rs~~a--a~~L~~~G~ 162 (178)
..+.+|+++|..| .||..+ +..+...|.
T Consensus 83 ~~~~~VlVHC~~G~~RS~~vv~ayLm~~~~~ 113 (155)
T 2hxp_A 83 SQNCGVLVHSLAGVSRSVTVTVAYLMQKLHL 113 (155)
T ss_dssp HTTCEEEEECSSSSSHHHHHHHHHHHHHHTC
T ss_pred HcCCcEEEECCCCCchhHHHHHHHHHHHcCC
Confidence 3578999999988 677743 334445564
No 103
>2c46_A MRNA capping enzyme; phosphatase, transferase, hydrolase, mRNA processing, multifunctional enzyme, nucleotidyltransferase; 1.6A {Homo sapiens} PDB: 1i9s_A 1i9t_A
Probab=70.73 E-value=18 Score=27.34 Aligned_cols=24 Identities=8% Similarity=0.127 Sum_probs=16.7
Q ss_pred eeCHHHHHHHhhc---CCeEEEeeCCh
Q 030411 50 YVNAEEAKNLIAV---ERYAVLDVRDN 73 (178)
Q Consensus 50 ~Is~~e~~~~l~~---~~~~lIDvR~~ 73 (178)
..+++++.+.++. +-..|||++..
T Consensus 66 r~~~~~v~~~l~~~~~~i~~VInL~~e 92 (241)
T 2c46_A 66 RFHPSMLSNYLKSLKVKMGLLVDLTNT 92 (241)
T ss_dssp CCCHHHHHHHHHHHTCEEEEEEECSSC
T ss_pred cCCHHHHHHHHHHhCCCcceeeeccCC
Confidence 4678888776653 23579999864
No 104
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Probab=70.42 E-value=24 Score=24.52 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=17.3
Q ss_pred eeCHHHHHHHhhcCCeEEEeeCChhh
Q 030411 50 YVNAEEAKNLIAVERYAVLDVRDNSQ 75 (178)
Q Consensus 50 ~Is~~e~~~~l~~~~~~lIDvR~~~e 75 (178)
.++.+.+..+.+.+--++|+.|+..+
T Consensus 27 ~p~~a~a~~La~~Ga~vvi~~r~~~e 52 (157)
T 3gxh_A 27 LPNEQQFSLLKQAGVDVVINLMPDSS 52 (157)
T ss_dssp CCCHHHHHHHHHTTCCEEEECSCTTS
T ss_pred CCCHHHHHHHHHcCCCEEEECCCccc
Confidence 46777777766655457788886543
No 105
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=68.11 E-value=5.9 Score=29.17 Aligned_cols=37 Identities=14% Similarity=0.212 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
...+++|+|++-..+..++..|...|+. +..+.|++.
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~-~~~lhg~~~ 66 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRLGHP-AQALHGDLS 66 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHHTCC-EEEECSSSC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCC-EEEEECCCC
Confidence 3568999999877888999999999986 788888864
No 106
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=67.51 E-value=9.9 Score=32.83 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
++.++||||++-..+..++..|...|+. +..+.||+.
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~g~~-~~~~h~~l~ 302 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNLGIH-AGAYHANLE 302 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCC-EEEECTTSC
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHCCCC-EEEecCCCC
Confidence 5678999999988888999999999985 888888874
No 107
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Probab=67.08 E-value=15 Score=28.05 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=24.2
Q ss_pred CeEEEEcCCCh---hHHHHHHHHHHcCCceEEEe
Q 030411 138 SKLLVVCQEGL---RSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 138 ~~iviyC~~g~---rs~~aa~~L~~~G~~~v~~l 168 (178)
.+|+|+|..|+ ....+|++|...||+ |.++
T Consensus 59 ~~v~VlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 91 (246)
T 1jzt_A 59 KHVFVIAGPGNNGGDGLVCARHLKLFGYN-PVVF 91 (246)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHTTCC-EEEE
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHCCCe-EEEE
Confidence 58999998654 577899999999996 6543
No 108
>2oud_A Dual specificity protein phosphatase 10; A central five-stranded B-sheet, hydrolase; 2.80A {Homo sapiens}
Probab=66.94 E-value=6 Score=28.29 Aligned_cols=28 Identities=32% Similarity=0.438 Sum_probs=19.1
Q ss_pred CCCCeEEEEcCCC-hhHHHH--HHHHHHcCC
Q 030411 135 SPESKLLVVCQEG-LRSAAA--ANKLEEAGF 162 (178)
Q Consensus 135 ~~~~~iviyC~~g-~rs~~a--a~~L~~~G~ 162 (178)
..+.+|+++|..| .||..+ +..+...|.
T Consensus 85 ~~~~~VlVHC~aG~~RSg~~v~ayLm~~~~~ 115 (177)
T 2oud_A 85 QCGKGLLIHCQAGVSRSATIVIAYLMKHTRM 115 (177)
T ss_dssp HTTCEEEEECSSSSSHHHHHHHHHHHHTSCC
T ss_pred hcCCcEEEEcCCCCCchHHHHHHHHHHHcCC
Confidence 3578999999987 677653 344445665
No 109
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=64.89 E-value=7.9 Score=28.02 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=30.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 137 ESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 137 ~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
..++||+|++-..+..++..|...|+. +..+.|++.
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~g~~-~~~lhg~~~ 89 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLKGVE-AVAIHGGKD 89 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHTCC-EEEECTTSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCc-EEEEeCCCC
Confidence 457999999988888999999999986 778888764
No 110
>3v0d_A Voltage-sensor containing phosphatase; PTP, hydrolase; HET: PO4; 1.10A {Ciona intestinalis} PDB: 3v0f_A* 3v0g_A 3v0h_A* 3awf_A 3v0j_A 3awe_A 3awg_A 3v0e_A 3v0i_A
Probab=64.69 E-value=10 Score=30.50 Aligned_cols=41 Identities=10% Similarity=0.263 Sum_probs=26.1
Q ss_pred eCHHHHHHHhh---cCCeEEEeeCChhhhhhccCCC-eEEecccc
Q 030411 51 VNAEEAKNLIA---VERYAVLDVRDNSQYNRAHIKS-SYHVPLFI 91 (178)
Q Consensus 51 Is~~e~~~~l~---~~~~~lIDvR~~~e~~~ghIpg-Avnip~~~ 91 (178)
-..+++...++ .+.+.|++++++..|......+ -.++|+.+
T Consensus 50 n~i~dv~~~L~~~h~~~y~V~NL~sE~~Yd~~~f~~~v~~~p~pD 94 (339)
T 3v0d_A 50 NPIGEVSRFFKTKHPDKFRIYNLCSERGYDETKFDNHVYRVMIDD 94 (339)
T ss_dssp EEHHHHHHHHHHHSTTCEEEEEEETTCCCCGGGGTTCEEEEEECT
T ss_pred CCHHHHHHHHHHhCCCceEEEECCCCCCCChHHcCCeEEEeccCC
Confidence 46677777775 3578999998765665544333 34666653
No 111
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=64.65 E-value=7.9 Score=26.54 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=31.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccc
Q 030411 134 FSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTV 175 (178)
Q Consensus 134 ~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w 175 (178)
.+++-+|+++++...........|...||..|..-..|..++
T Consensus 9 m~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al 50 (134)
T 3to5_A 9 LNKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTAL 50 (134)
T ss_dssp CCTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHH
T ss_pred hCCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHH
Confidence 356668999988765556778889999998777777777665
No 112
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}
Probab=64.21 E-value=26 Score=27.29 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=17.1
Q ss_pred CCCeEEEEcCCCh-hHHH-HHH-HHHHcCC
Q 030411 136 PESKLLVVCQEGL-RSAA-AAN-KLEEAGF 162 (178)
Q Consensus 136 ~~~~iviyC~~g~-rs~~-aa~-~L~~~G~ 162 (178)
.+.+|+|+|..|. ||.. ++. .+...|.
T Consensus 105 ~g~~VLVHC~aG~sRS~tvv~ayLm~~~g~ 134 (294)
T 3nme_A 105 NGGVTYVHSTAGMGRAPAVALTYMFWVQGY 134 (294)
T ss_dssp HCSEEEEECSSSSSHHHHHHHHHHHHTSCC
T ss_pred CCCEEEEECCCCCchhHHHHHHHHHHHhCC
Confidence 3678999999875 7553 333 3444454
No 113
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}
Probab=64.03 E-value=8.4 Score=27.08 Aligned_cols=28 Identities=11% Similarity=0.214 Sum_probs=19.1
Q ss_pred CCCCeEEEEcCCCh-hHH--HHHHHHHHcCC
Q 030411 135 SPESKLLVVCQEGL-RSA--AAANKLEEAGF 162 (178)
Q Consensus 135 ~~~~~iviyC~~g~-rs~--~aa~~L~~~G~ 162 (178)
..+.+|+|+|..|. ||. .++..+...|.
T Consensus 85 ~~~~~VlVHC~~G~sRS~~vv~ayLm~~~~~ 115 (161)
T 3emu_A 85 QRKEGVLIISGTGVNKAPAIVIAFLMYYQRL 115 (161)
T ss_dssp HTTCEEEEEESSSSSHHHHHHHHHHHHHTTC
T ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHHHhCC
Confidence 35689999999875 755 34455566665
No 114
>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.20A {Homo sapiens}
Probab=63.64 E-value=10 Score=29.30 Aligned_cols=30 Identities=10% Similarity=0.313 Sum_probs=24.0
Q ss_pred CeEEEEcCCCh---hHHHHHHHHHHcCCceEEEe
Q 030411 138 SKLLVVCQEGL---RSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 138 ~~iviyC~~g~---rs~~aa~~L~~~G~~~v~~l 168 (178)
.+|+++|..|+ ....+|++|...||+ |.++
T Consensus 86 ~~vlVlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 118 (259)
T 3d3k_A 86 PTVALLCGPHVKGAQGISCGRHLANHDVQ-VILF 118 (259)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHTTCE-EEEE
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHCCCe-EEEE
Confidence 58999998654 577899999999996 5543
No 115
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB: 2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Probab=63.54 E-value=32 Score=23.42 Aligned_cols=25 Identities=12% Similarity=0.009 Sum_probs=15.6
Q ss_pred HHHHHHHhhcCCeEEEeeCChhhhh
Q 030411 53 AEEAKNLIAVERYAVLDVRDNSQYN 77 (178)
Q Consensus 53 ~~e~~~~l~~~~~~lIDvR~~~e~~ 77 (178)
.+++..+.+.+=..|||+|++.|..
T Consensus 18 ~~d~~~L~~~gi~~Vi~l~~~~e~~ 42 (161)
T 2i6j_A 18 ENEILEWRKEGVKRVLVLPEDWEIE 42 (161)
T ss_dssp HHHHHHHHHHTCCEEEECSCHHHHH
T ss_pred HHHHHHHHHCCCCEEEEcCchhhhh
Confidence 3445444444445799999986643
No 116
>1vdm_A Purine phosphoribosyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Pyrococcus horikoshii} SCOP: c.61.1.1
Probab=61.84 E-value=9.1 Score=26.45 Aligned_cols=32 Identities=13% Similarity=0.298 Sum_probs=26.9
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIAC 167 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~ 167 (178)
++++|+|+++ +|.+...++..|++.|.+.|.+
T Consensus 82 ~gk~VllVDDvitTG~Tl~~a~~~L~~~ga~~v~~ 116 (153)
T 1vdm_A 82 KDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKI 116 (153)
T ss_dssp BTCEEEEEEEEESSCHHHHHHHHHHHTTTBSEEEE
T ss_pred CCCEEEEEecccCChHHHHHHHHHHHHcCCCEEEE
Confidence 5788999987 7889899999999999887653
No 117
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A
Probab=61.77 E-value=11 Score=29.20 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=24.1
Q ss_pred CeEEEEcCCCh---hHHHHHHHHHHcCCceEEEe
Q 030411 138 SKLLVVCQEGL---RSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 138 ~~iviyC~~g~---rs~~aa~~L~~~G~~~v~~l 168 (178)
.+|+|+|..|+ ....+|++|...||+ |.++
T Consensus 80 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~-V~V~ 112 (265)
T 2o8n_A 80 PTVLVICGPGNNGGDGLVCARHLKLFGYQ-PTIY 112 (265)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHTTCE-EEEE
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHCCCc-EEEE
Confidence 58999998654 577899999999996 6543
No 118
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens}
Probab=60.48 E-value=12 Score=29.67 Aligned_cols=30 Identities=10% Similarity=0.313 Sum_probs=24.0
Q ss_pred CeEEEEcCCCh---hHHHHHHHHHHcCCceEEEe
Q 030411 138 SKLLVVCQEGL---RSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 138 ~~iviyC~~g~---rs~~aa~~L~~~G~~~v~~l 168 (178)
.+|+|+|..|+ .+..+|++|...||+ |.++
T Consensus 133 ~~vlVlcG~GNNGGDGlv~AR~L~~~G~~-V~V~ 165 (306)
T 3d3j_A 133 PTVALLCGPHVKGAQGISCGRHLANHDVQ-VILF 165 (306)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHTTCE-EEEE
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHCCCc-EEEE
Confidence 58999998654 577899999999996 5543
No 119
>1vch_A Phosphoribosyltransferase-related protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.94A {Thermus thermophilus} SCOP: c.61.1.1
Probab=60.13 E-value=12 Score=26.58 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=27.1
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIAC 167 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~ 167 (178)
++++|+++++ +|.+...++..|++.|-+.|++
T Consensus 119 ~gk~VllVDDvitTG~Tl~~~~~~L~~~Ga~~V~~ 153 (175)
T 1vch_A 119 LNQRVVLVSDVVASGETMRAMEKMVLRAGGHVVAR 153 (175)
T ss_dssp TTCEEEEEEEEESSSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCeEEEE
Confidence 5788999987 7999899999999999876653
No 120
>3ohg_A Uncharacterized protein from DUF2233 family; structural genomics, unknown function, joint center for STRU genomics, JCSG; HET: MSE; 1.80A {Bacteroides ovatus}
Probab=59.63 E-value=11 Score=29.59 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.9
Q ss_pred ChhHHHHHHHHHHcCCceEEEecccc
Q 030411 147 GLRSAAAANKLEEAGFQNIACITSGL 172 (178)
Q Consensus 147 g~rs~~aa~~L~~~G~~~v~~l~GG~ 172 (178)
|..-...+..|+++|..+..+||||-
T Consensus 218 G~tl~ela~~~~~lG~~~AlnLDGGg 243 (285)
T 3ohg_A 218 GLTLPHLATMMKAVGCYNAINLDGGG 243 (285)
T ss_dssp CBCHHHHHHHHHHHTCSEEEECCCGG
T ss_pred CCCHHHHHHHHHHcCCCeEEECCCCc
Confidence 45678999999999999999999984
No 121
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=58.00 E-value=14 Score=29.05 Aligned_cols=36 Identities=11% Similarity=0.203 Sum_probs=30.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 137 ESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 137 ~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
..+++|+|++-..+..++..|...|+. +..+.|++.
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~g~~-~~~lhg~l~ 63 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRLGHP-AQALHGDMS 63 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTTTCC-EEEECSCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCC-EEEEeCCCC
Confidence 678999999877888999999999986 788888864
No 122
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=57.33 E-value=15 Score=26.46 Aligned_cols=47 Identities=17% Similarity=0.365 Sum_probs=35.3
Q ss_pred HHHhcCCCCCeEEEEcCCCh--hHHHHHHHHHH---cCCceEEEeccccccc
Q 030411 129 SVKSQFSPESKLLVVCQEGL--RSAAAANKLEE---AGFQNIACITSGLQTV 175 (178)
Q Consensus 129 ~~~~~~~~~~~iviyC~~g~--rs~~aa~~L~~---~G~~~v~~l~GG~~~w 175 (178)
..+..++++..+|+.|-.|. .|...|..|.+ .|..++..+-||-.+.
T Consensus 66 ~il~~i~~~~~vI~LD~~Gk~~sS~~fA~~l~~~~~~g~~~i~FvIGG~~Gl 117 (163)
T 4fak_A 66 RILAKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGL 117 (163)
T ss_dssp HHHHTCCTTSEEEEEEEEEEECCHHHHHHHHHHHHHTTCCEEEEEECBTTBC
T ss_pred HHHHhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCcceEEEEECCCcc
Confidence 34566778888888887664 58888888776 5888899888986554
No 123
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=57.02 E-value=19 Score=29.92 Aligned_cols=51 Identities=12% Similarity=0.160 Sum_probs=36.3
Q ss_pred HHHHHHhcCCC-CCeEEEEcCCChhHHHHHHHHHHc--CCceEEEecccccccc
Q 030411 126 FVQSVKSQFSP-ESKLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVK 176 (178)
Q Consensus 126 ~~~~~~~~~~~-~~~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~ 176 (178)
+.+.+.+..+. ...-+++|++|..+..+|-.|.+. |-++|...+|+|++|.
T Consensus 112 lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t 165 (456)
T 4atq_A 112 VTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRT 165 (456)
T ss_dssp HHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSS
T ss_pred HHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCcc
Confidence 34444444553 356788899999988888777654 6567888999999874
No 124
>1zn8_A APRT, adenine phosphoribosyltransferase; glycosyltransferase, purine salvage; HET: AMP; 1.76A {Homo sapiens} SCOP: c.61.1.1 PDB: 1ore_A* 1zn7_A* 1zn9_A*
Probab=56.90 E-value=14 Score=26.32 Aligned_cols=33 Identities=24% Similarity=0.357 Sum_probs=27.5
Q ss_pred CCCCeEEEEcC---CChhHHHHHHHHHHcCCceEEE
Q 030411 135 SPESKLLVVCQ---EGLRSAAAANKLEEAGFQNIAC 167 (178)
Q Consensus 135 ~~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~ 167 (178)
.++++|+++++ +|.+...++..|++.|.+.|.+
T Consensus 118 ~~gk~VllVDDvitTG~Tl~~~~~~L~~~Ga~~v~~ 153 (180)
T 1zn8_A 118 EPGQRVVVVDDLLATGGTMNAACELLGRLQAEVLEC 153 (180)
T ss_dssp CTTCEEEEEEEEESSSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEEEcCCcccHHHHHHHHHHHHHcCCEEEEE
Confidence 36788999987 7999999999999999876653
No 125
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=56.45 E-value=9.8 Score=25.30 Aligned_cols=32 Identities=34% Similarity=0.460 Sum_probs=22.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHH----cCCceEEE
Q 030411 135 SPESKLLVVCQEGLRSAAAANKLEE----AGFQNIAC 167 (178)
Q Consensus 135 ~~~~~iviyC~~g~rs~~aa~~L~~----~G~~~v~~ 167 (178)
.+..+|++.|.+|..+...+..+++ .|++ +.+
T Consensus 4 ~~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~-v~i 39 (108)
T 3nbm_A 4 SKELKVLVLCAGSGTSAQLANAINEGANLTEVR-VIA 39 (108)
T ss_dssp -CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCS-EEE
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHCCCc-eEE
Confidence 3566899999999887777766554 4765 444
No 126
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} SCOP: c.61.1.1
Probab=56.40 E-value=18 Score=26.86 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=27.6
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
.++.|+++++ +|.....+.+.|++.|.++|+++
T Consensus 123 ~~~~VllvDd~l~TG~T~~~a~~~L~~~G~~~I~~~ 158 (209)
T 1i5e_A 123 EERDFIIVDPMLATGGSAVAAIDALKKRGAKSIKFM 158 (209)
T ss_dssp TTSEEEEECSEESSSHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCEEEEEcCCCcCHHHHHHHHHHHHHcCCCEEEEE
Confidence 4668898877 78999999999999999887754
No 127
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=56.20 E-value=21 Score=29.84 Aligned_cols=52 Identities=12% Similarity=0.036 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHH-----cCC---ceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEE-----AGF---QNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~-----~G~---~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+.+-.-|++|++|..+..+|-.|.+ .|. ++|....|||.++.
T Consensus 115 ~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t 174 (473)
T 4e3q_A 115 MLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVT 174 (473)
T ss_dssp HHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSS
T ss_pred HHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCc
Confidence 34444455556566678999999988877766643 243 45778899998864
No 128
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=55.97 E-value=17 Score=31.85 Aligned_cols=46 Identities=15% Similarity=0.329 Sum_probs=35.5
Q ss_pred HHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEecccc
Q 030411 126 FVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGL 172 (178)
Q Consensus 126 ~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 172 (178)
++......+..+.+++|+|++-.++...+..|.+.|++ +..+.|++
T Consensus 434 Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~-~~~lh~~~ 479 (661)
T 2d7d_A 434 LIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIK-VNYLHSEI 479 (661)
T ss_dssp HHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCC-EEEECTTC
T ss_pred HHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCC-eEEEeCCC
Confidence 33444444456779999999988889999999999985 77777775
No 129
>2geb_A Hypoxanthine-guanine phosphoribosyltransferase; HGPRT, mutant, inhibitor design, selectivity; 1.70A {Thermoanaerobacter tengcongensis}
Probab=55.67 E-value=14 Score=26.56 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=27.0
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIAC 167 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~ 167 (178)
++++|+|+++ +|.+...++..|++.|-+.|.+
T Consensus 97 ~gk~VllVDDvi~TG~Tl~~a~~~L~~~Ga~~V~~ 131 (185)
T 2geb_A 97 EGKDVLIVEDIIDSGLTLAYLRETLLGRKPRSLKI 131 (185)
T ss_dssp TTSEEEEEEEEESSCHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCEEEEECCccCCHHHHHHHHHHHHhcCCCEEEE
Confidence 5778999987 7999999999999999887653
No 130
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=55.44 E-value=13 Score=31.46 Aligned_cols=37 Identities=19% Similarity=0.395 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
++.++||||++-..+...+..|...|+. +..+.||+.
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~g~~-~~~~h~~l~ 271 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSKGIS-AAAYHAGLE 271 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCC-EEEECTTSC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCC-EEEecCCCC
Confidence 5678999999988888999999999985 888888875
No 131
>2dy0_A APRT, adenine phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.25A {Escherichia coli K12}
Probab=55.35 E-value=15 Score=26.51 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=27.3
Q ss_pred CCCCeEEEEcC---CChhHHHHHHHHHHcCCceEE
Q 030411 135 SPESKLLVVCQ---EGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 135 ~~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~ 166 (178)
.++++|+|+++ +|.+...++..|++.|.+.|.
T Consensus 124 ~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~~V~ 158 (190)
T 2dy0_A 124 KPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVAD 158 (190)
T ss_dssp CTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEEE
T ss_pred CCcCEEEEEEccccchHHHHHHHHHHHHcCCEEEE
Confidence 46789999987 799999999999999987654
No 132
>1y0b_A Xanthine phosphoribosyltransferase; purine metabolism, STRU genomics, PSI, protein structure initative, midwest center structural genomics; HET: G4P; 1.80A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 2fxv_A*
Probab=54.54 E-value=16 Score=26.48 Aligned_cols=32 Identities=16% Similarity=0.276 Sum_probs=27.3
Q ss_pred CCCCeEEEEcC---CChhHHHHHHHHHHcCCceEE
Q 030411 135 SPESKLLVVCQ---EGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 135 ~~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~ 166 (178)
.++++|+++++ +|.+...++..|++.|.+.|+
T Consensus 118 ~~gk~VllVDDvitTG~Tl~~a~~~L~~~Ga~~V~ 152 (197)
T 1y0b_A 118 SDQDHVLIIDDFLANGQAAHGLVSIVKQAGASIAG 152 (197)
T ss_dssp CTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEEE
T ss_pred CCcCEEEEEEcccccCHHHHHHHHHHHHCCCEEEE
Confidence 36789999987 799999999999999987665
No 133
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=54.45 E-value=15 Score=28.81 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
+..+++|+|++-..+...+..|...|+. +..+.|++.
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 285 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQNFP-AIAIHRGMP 285 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCC-EEEECTTSC
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCc-EEEEeCCCC
Confidence 5678999999988888999999999986 778888764
No 134
>1hgx_A HGXPRTASE, hypoxanthine-guanine-xanthine phosphoribosyltransferase; glycosyltransferase, purine salvage, transferase (glycosyltransferase); HET: 5GP; 1.90A {Tritrichomonas foetus} SCOP: c.61.1.1
Probab=54.24 E-value=16 Score=26.21 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=26.9
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIAC 167 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~ 167 (178)
++++|+|+++ +|.+...+++.|++.|-+.|.+
T Consensus 94 ~gk~VllVDDvi~TG~Tl~~a~~~L~~~ga~~v~~ 128 (183)
T 1hgx_A 94 EGRHVLVVEDIIDTGLTMYQLLNNLQMRKPASLKV 128 (183)
T ss_dssp TTSEEEEEEEEESSSHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCEEEEECCccCCHHHHHHHHHHHHhcCCCEEEE
Confidence 5778999986 7899899999999999877653
No 135
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Probab=53.75 E-value=19 Score=26.39 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=28.2
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEec
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACIT 169 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l~ 169 (178)
++++|+|+++ +|.+...++..|++.|-+.|++..
T Consensus 119 ~gk~VllVDDvi~TG~Tl~~a~~~L~~~ga~~V~v~~ 155 (208)
T 1wd5_A 119 KGRDVVLVDDGVATGASMEAALSVVFQEGPRRVVVAV 155 (208)
T ss_dssp TTSEEEEECSCBSSCHHHHHHHHHHHTTCCSEEEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 5788999987 688888999999999988777543
No 136
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=53.51 E-value=15 Score=32.16 Aligned_cols=46 Identities=13% Similarity=0.191 Sum_probs=35.0
Q ss_pred HHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEecccc
Q 030411 126 FVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGL 172 (178)
Q Consensus 126 ~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 172 (178)
++.........+.+++|+|++-.++...+..|.+.|++ +..+.|++
T Consensus 428 Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~-~~~lh~~~ 473 (664)
T 1c4o_A 428 LMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIR-ARYLHHEL 473 (664)
T ss_dssp HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCC-EEEECTTC
T ss_pred HHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCC-ceeecCCC
Confidence 33333333446779999999988889999999999985 77777775
No 137
>1g2q_A Adenine phosphoribosyltransferase 1; dimer, single domain, catalytic loop; 1.50A {Saccharomyces cerevisiae} SCOP: c.61.1.1 PDB: 1g2p_A
Probab=53.29 E-value=17 Score=26.13 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=27.1
Q ss_pred CCCCeEEEEcC---CChhHHHHHHHHHHcCCceEE
Q 030411 135 SPESKLLVVCQ---EGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 135 ~~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~ 166 (178)
.++++|+++++ +|.+...++..|++.|.+.|.
T Consensus 120 ~~gk~VLlVDDvitTG~Tl~~~~~~L~~~Ga~~v~ 154 (187)
T 1g2q_A 120 PAGSNVIIVDDIIATGGSAAAAGELVEQLEANLLE 154 (187)
T ss_dssp CTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEEE
T ss_pred CCcCEEEEECCCcccHHHHHHHHHHHHHcCCeEEE
Confidence 36788999987 799999999999999987665
No 138
>1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta structure, domain duplication, phosphoribosyltransferase type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis} SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A*
Probab=53.01 E-value=21 Score=28.37 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=29.1
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEec
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACIT 169 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l~ 169 (178)
++++++++++ +|.+...++..|++.|-++|+.+.
T Consensus 216 ~gk~VlLVDDiitTG~Tl~~aa~~Lk~~Ga~~V~~~~ 252 (317)
T 1dku_A 216 EGKTAILIDDIIDTAGTITLAANALVENGAKEVYACC 252 (317)
T ss_dssp TTCEEEEECSEESSCHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCEEEEEecccCCCHHHHHHHHHHHHcCCcEEEEEE
Confidence 4678999987 799999999999999999888654
No 139
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=52.85 E-value=17 Score=28.11 Aligned_cols=38 Identities=26% Similarity=0.380 Sum_probs=31.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 135 SPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 135 ~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
....+++|+|++-..+...+..|.+.|+. +..+.|++.
T Consensus 236 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 273 (367)
T 1hv8_A 236 NKEFYGLVFCKTKRDTKELASMLRDIGFK-AGAIHGDLS 273 (367)
T ss_dssp STTCCEEEECSSHHHHHHHHHHHHHTTCC-EEEECSSSC
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHhcCCC-eEEeeCCCC
Confidence 45678999999988888999999999986 788888764
No 140
>1ufr_A TT1027, PYR mRNA-binding attenuation protein; pyrimidine nucleotide biosynthesis, transcriptional attenuation, RNA-binding protein; 2.60A {Thermus thermophilus} SCOP: c.61.1.1
Probab=52.56 E-value=18 Score=25.82 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=26.6
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcC-CceEEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAG-FQNIAC 167 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G-~~~v~~ 167 (178)
++++|+|+++ +|.+...++..|++.| .+.|++
T Consensus 95 ~gk~VllVDDvitTG~Tl~~a~~~L~~~G~a~~V~~ 130 (181)
T 1ufr_A 95 TGKAIVLVDDVLYTGRTARAALDALIDLGRPRRIYL 130 (181)
T ss_dssp TTCEEEEEEEEESSSHHHHHHHHHHHHHCCCSEEEE
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHhcCCCcEEEE
Confidence 5678999977 7999999999999999 776653
No 141
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=52.14 E-value=27 Score=22.89 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=18.1
Q ss_pred CeEEEEcCCChhHHH-HH----HHHHHcCCc
Q 030411 138 SKLLVVCQEGLRSAA-AA----NKLEEAGFQ 163 (178)
Q Consensus 138 ~~iviyC~~g~rs~~-aa----~~L~~~G~~ 163 (178)
.+|+++|.+|.-+.. ++ ..+.+.|++
T Consensus 19 ~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~ 49 (110)
T 3czc_A 19 VKVLTACGNGMGSSMVIKMKVENALRQLGVS 49 (110)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred cEEEEECCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 579999999976554 33 346666775
No 142
>1yfz_A Hypoxanthine-guanine phosphoribosyltransferase; protein-nucleotide complex; HET: IMP; 2.20A {Thermoanaerobacter tengcongensis} SCOP: c.61.1.1 PDB: 1r3u_A*
Probab=51.98 E-value=17 Score=26.57 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=26.9
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIAC 167 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~ 167 (178)
++++|+|+++ +|.+...++..|++.|-+.|.+
T Consensus 117 ~gk~VllVDDvi~TG~Tl~~a~~~L~~~Ga~~V~~ 151 (205)
T 1yfz_A 117 EGKDVLIVEDIIDSGLTLAYLRETLLGRKPRSLKI 151 (205)
T ss_dssp TTSEEEEEEEEESSCHHHHHHHHHHHTTCCSEEEE
T ss_pred CcCEEEEECCccCcHHHHHHHHHHHHhcCCCEEEE
Confidence 5678999987 7889899999999999877653
No 143
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=51.87 E-value=15 Score=29.00 Aligned_cols=37 Identities=14% Similarity=0.316 Sum_probs=31.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
...+++++|++-..+..++..|...|+. +..+.|++.
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 293 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLGYS-CYYSHARMK 293 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHTCC-EEEECTTSC
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhcCCC-eEEecCCCC
Confidence 4568999999988888999999999986 788888764
No 144
>1a3c_A PYRR, pyrimidine operon regulatory protein PYRR; transcription regulation, attenuation protein, RNA-binding P pyrimidine biosynthesis; 1.60A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 1a4x_A 2igb_A* 1xz8_A* 1non_A 1xzn_A*
Probab=50.82 E-value=19 Score=25.56 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=26.6
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcC-CceEEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAG-FQNIAC 167 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G-~~~v~~ 167 (178)
++++|+|+++ +|.+...++..|++.| .+.|++
T Consensus 97 ~gk~VllVDDvitTG~Tl~~a~~~L~~~G~a~~V~~ 132 (181)
T 1a3c_A 97 TDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQL 132 (181)
T ss_dssp TTSEEEEEEEEESSSHHHHHHHHHHHHHCCCSEEEE
T ss_pred CCCEEEEEeCccCcHHHHHHHHHHHHhcCCCcEEEE
Confidence 5778999976 7999999999999997 776653
No 145
>1tc1_A Protein (hypoxanthine phosphoribosyltransferase); transferase,phosphoribosyltransferase, purine salvage, nucleotide metabolism; HET: FMB MES; 1.41A {Trypanosoma cruzi} SCOP: c.61.1.1 PDB: 1tc2_A* 1p19_A* 1p18_A* 1p17_A* 1i0l_A* 1i14_A* 1i0i_A* 1i13_A*
Probab=49.86 E-value=19 Score=26.87 Aligned_cols=32 Identities=9% Similarity=-0.013 Sum_probs=27.2
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIAC 167 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~ 167 (178)
++++|+|+++ +|.+...++..|++.|-+.|.+
T Consensus 102 ~Gk~VLLVDDii~TG~Tl~~a~~~L~~~Ga~~V~v 136 (220)
T 1tc1_A 102 EGHHVLIVEDIVDTALTLNYLYHMYFTRRPASLKT 136 (220)
T ss_dssp TTSEEEEEEEEESSCHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCEEEEEeCccCcHHHHHHHHHHHHhcCCCEEEE
Confidence 5788999987 7999999999999999887663
No 146
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=49.69 E-value=28 Score=29.20 Aligned_cols=38 Identities=8% Similarity=0.077 Sum_probs=31.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHc---CCceEEEeccccc
Q 030411 135 SPESKLLVVCQEGLRSAAAANKLEEA---GFQNIACITSGLQ 173 (178)
Q Consensus 135 ~~~~~iviyC~~g~rs~~aa~~L~~~---G~~~v~~l~GG~~ 173 (178)
.++.++||||++-..+..++..|... |+. +..+.|++.
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~-v~~~h~~~~ 377 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLP-ILEFHGKIT 377 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSC-EEEESTTSC
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccCCce-EEEecCCCC
Confidence 56779999999988888899999887 775 888888864
No 147
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=55.11 E-value=3.5 Score=29.12 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=30.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
++.++||+|++-..+..++..|...|+. +..+.|++.
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~~~~-~~~~~g~~~ 65 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREAGIN-NCYLEGEMV 65 (170)
Confidence 3567999999888888999999999885 777777764
No 148
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI, protein structure initiative, joint center for structu genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1
Probab=49.52 E-value=28 Score=26.17 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=27.5
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
.++.||++++ +|.....+.+.|++.|.++|+++
T Consensus 135 ~gr~VilvDd~laTG~Tl~~ai~~L~~~G~~~I~~~ 170 (221)
T 1o5o_A 135 DDKEVFLLDPMLATGVSSIKAIEILKENGAKKITLV 170 (221)
T ss_dssp TTCEEEEECSEESSSHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEECCccccHHHHHHHHHHHHHcCCCEEEEE
Confidence 3567888876 78899999999999999887754
No 149
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=49.43 E-value=15 Score=29.03 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=21.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEE
Q 030411 137 ESKLLVVCQEGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 137 ~~~iviyC~~g~rs~~aa~~L~~~G~~~v~ 166 (178)
..++++...+ ..|..+++.|.+.|++ |.
T Consensus 179 ~~kvlvllSG-vDS~vaa~ll~~~G~~-v~ 206 (307)
T 1vbk_A 179 EGRMIGILHD-ELSALAIFLMMKRGVE-VI 206 (307)
T ss_dssp TCEEEEECSS-HHHHHHHHHHHHBTCE-EE
T ss_pred CCcEEEEEeC-CcHHHHHHHHHhCCCe-EE
Confidence 3466666666 8888999999999985 44
No 150
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=49.32 E-value=41 Score=22.13 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=26.6
Q ss_pred HHHHHhcCCCCCeEEEEcCCCh-----hHHHHHHHHHHcCCceEEEecc
Q 030411 127 VQSVKSQFSPESKLLVVCQEGL-----RSAAAANKLEEAGFQNIACITS 170 (178)
Q Consensus 127 ~~~~~~~~~~~~~iviyC~~g~-----rs~~aa~~L~~~G~~~v~~l~G 170 (178)
.+...+.+..+++|++.++.|. +.......+.+.|++ +.++.|
T Consensus 69 ~~~i~~~~~~G~~V~~l~d~GdP~i~~~~~~l~~~~~~~gi~-v~viPG 116 (117)
T 3hh1_A 69 VRQVIELLEEGSDVALVTDAGTPAISDPGYTMASAAHAAGLP-VVPVPG 116 (117)
T ss_dssp HHHHHHHHHTTCCEEEEEETTSCGGGSTTHHHHHHHHHTTCC-EEEEC-
T ss_pred HHHHHHHHHCCCeEEEEecCCcCeEeccHHHHHHHHHHCCCc-EEEeCC
Confidence 3334444456778888884222 345666777888986 777766
No 151
>1pzm_A HGPRT, hypoxanthine-guanine phosphoribosyltransferase; HET: 5GP; 2.10A {Leishmania tarentolae} SCOP: c.61.1.1
Probab=49.00 E-value=21 Score=26.39 Aligned_cols=32 Identities=3% Similarity=0.010 Sum_probs=27.1
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIAC 167 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~ 167 (178)
++++|+|+++ +|.+...++..|++.|-+.|.+
T Consensus 117 ~gk~VllVDDvi~TG~Tl~aa~~~L~~~Ga~~V~v 151 (211)
T 1pzm_A 117 ENRHIMLVEDIVDSAITLQYLMRFMLAKKPASLKT 151 (211)
T ss_dssp TTCEEEEEEEEESSCHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCEEEEECCccccHHHHHHHHHHHHhcCCCEEEE
Confidence 5788999987 7999999999999999877653
No 152
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=48.81 E-value=18 Score=28.66 Aligned_cols=37 Identities=16% Similarity=0.354 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
...+++|+|++-..+..++..|...|+. +..+.|++.
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 301 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKEGHQ-VALLSGEMM 301 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHTTCC-CEEECTTSC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhCCCe-EEEecCCCC
Confidence 4568999999988889999999999985 788888764
No 153
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=48.54 E-value=19 Score=28.22 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
.+.+++|+|++-..+...+..|...|+. +..+.|++.
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 278 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSEGHE-VSILHGDLQ 278 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHTTCC-CEEECTTSC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcCCc-EEEeCCCCC
Confidence 4578999999988888999999999985 888888764
No 154
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=48.15 E-value=27 Score=29.08 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=31.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHc--CCceEEEeccccccccC
Q 030411 137 ESKLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVKP 177 (178)
Q Consensus 137 ~~~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~~ 177 (178)
.-.-|++|++|..+...|-.|.+. |-++|...+|+|.+|..
T Consensus 142 ~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~ 184 (454)
T 4ao9_A 142 QIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVL 184 (454)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTC
T ss_pred CCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccc
Confidence 445678899999988877776553 66778899999998753
No 155
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=48.06 E-value=28 Score=27.79 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=30.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEecc
Q 030411 135 SPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITS 170 (178)
Q Consensus 135 ~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~G 170 (178)
.++.+++|+|++-..+..++..|...|+. +..+.|
T Consensus 359 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~-~~~~~g 393 (494)
T 1wp9_A 359 KQNSKIIVFTNYRETAKKIVNELVKDGIK-AKRFVG 393 (494)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHTTCC-EEEECC
T ss_pred CCCCeEEEEEccHHHHHHHHHHHHHcCCC-cEEEec
Confidence 46788999999977888999999999986 778888
No 156
>1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine metabolism, cataly transferase; HET: 9DA; 1.85A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A*
Probab=47.94 E-value=24 Score=25.38 Aligned_cols=32 Identities=31% Similarity=0.315 Sum_probs=27.1
Q ss_pred CCCCeEEEEcC---CChhHHHHHHHHHHcCCc--eEE
Q 030411 135 SPESKLLVVCQ---EGLRSAAAANKLEEAGFQ--NIA 166 (178)
Q Consensus 135 ~~~~~iviyC~---~g~rs~~aa~~L~~~G~~--~v~ 166 (178)
.++++|+++++ +|.+...++..|++.|-+ .|.
T Consensus 115 ~~gk~VLLVDDVitTG~Tl~aa~~~L~~~Ga~~~~V~ 151 (186)
T 1l1q_A 115 GPHDVVLLHDDVLATGGTLLAAIELCETAGVKPENIY 151 (186)
T ss_dssp CTTCCEEEEEEEESSSHHHHHHHHHHHHTTCCGGGEE
T ss_pred CCcCEEEEEecccccHHHHHHHHHHHHHcCCCcceEE
Confidence 36788999987 788988999999999987 655
No 157
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=47.92 E-value=22 Score=25.66 Aligned_cols=47 Identities=19% Similarity=0.403 Sum_probs=33.5
Q ss_pred HHHhcCCCCCeEEEEcCCCh--hHHHHHHHHHH---cCCceEEEeccccccc
Q 030411 129 SVKSQFSPESKLLVVCQEGL--RSAAAANKLEE---AGFQNIACITSGLQTV 175 (178)
Q Consensus 129 ~~~~~~~~~~~iviyC~~g~--rs~~aa~~L~~---~G~~~v~~l~GG~~~w 175 (178)
.++..++++.-+|+.|..|. .|...|..|.+ .|..++..+-||-.+.
T Consensus 62 ~il~~i~~~~~vI~LD~~Gk~~sS~~fA~~l~~~~~~G~~~i~FvIGGa~Gl 113 (167)
T 1to0_A 62 RILSKISPDAHVIALAIEGKMKTSEELADTIDKLATYGKSKVTFVIGGSLGL 113 (167)
T ss_dssp HHHTTSCTTSEEEEEEEEEEECCHHHHHHHHHHHHTTTCCEEEEEECCSSCC
T ss_pred HHHhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCceEEEEEECCCCC
Confidence 34455666655788887664 58888888877 5777888888887654
No 158
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Probab=47.71 E-value=26 Score=29.17 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=28.6
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
++++|+++++ +|.+...+++.|++.|-+.|+++
T Consensus 337 ~gk~VlLVDDvitTG~Tl~~a~~~L~~~Ga~~V~~~ 372 (459)
T 1ao0_A 337 EGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVK 372 (459)
T ss_dssp TTCEEEEEESCCSSSHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCCeEEEEeeeecCHHHHHHHHHHHHHcCCCEEEEE
Confidence 5788999988 68999999999999999887754
No 159
>2p1z_A Phosphoribosyltransferase; STRU genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.44A {Corynebacterium diphtheriae}
Probab=47.24 E-value=22 Score=25.48 Aligned_cols=32 Identities=31% Similarity=0.356 Sum_probs=26.9
Q ss_pred CCCCeEEEEcC---CChhHHHHHHHHHHcCCceEE
Q 030411 135 SPESKLLVVCQ---EGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 135 ~~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~ 166 (178)
.++++|+++++ +|.+...++..|++.|.+.|.
T Consensus 112 ~~gk~VllVDDvitTG~Tl~~~~~~L~~~Ga~~v~ 146 (180)
T 2p1z_A 112 VVGKKVLVVEDTTTTGNSPLTAVKALREAGAEVVG 146 (180)
T ss_dssp CTTCEEEEEEEECSSSHHHHHHHHHHHHHTCEEEE
T ss_pred CCcCEEEEEEeccCCcHHHHHHHHHHHHcCCeEEE
Confidence 46789999987 788888999999999987655
No 160
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=46.59 E-value=20 Score=28.48 Aligned_cols=36 Identities=14% Similarity=0.375 Sum_probs=30.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 137 ESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 137 ~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
..+++|+|++-..+...+..|...|+. +..+.|++.
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~~~~-~~~~h~~~~ 311 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREANFT-VSSMHGDMP 311 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCC-CEEECTTSC
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhCCCc-eEEeeCCCC
Confidence 458999999988888999999999985 888888864
No 161
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=46.55 E-value=32 Score=29.13 Aligned_cols=38 Identities=8% Similarity=0.077 Sum_probs=31.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHc---CCceEEEeccccc
Q 030411 135 SPESKLLVVCQEGLRSAAAANKLEEA---GFQNIACITSGLQ 173 (178)
Q Consensus 135 ~~~~~iviyC~~g~rs~~aa~~L~~~---G~~~v~~l~GG~~ 173 (178)
.++.++||||++...+..++..|... |+. +..+.|++.
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~-v~~~hg~~~ 326 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLP-ILEFHGKIT 326 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSC-EEEESTTSC
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCc-EEEecCCCC
Confidence 56778999999988888999999887 775 788888864
No 162
>2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural genomics, PSI, structure initiative; 1.95A {Streptococcus pyogenes} SCOP: c.61.1.1
Probab=46.51 E-value=25 Score=25.83 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=26.4
Q ss_pred CCCCeEEEEcC---CChhHHHHHHHHHHcCCceE
Q 030411 135 SPESKLLVVCQ---EGLRSAAAANKLEEAGFQNI 165 (178)
Q Consensus 135 ~~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v 165 (178)
.++++|+|+++ +|.....++..|++.|.+.|
T Consensus 115 ~~gk~VliVDDvitTG~Tl~~a~~~L~~~Ga~~v 148 (211)
T 2aee_A 115 LKGQKMVIIEDLISTGGSVLDAAAAASREGADVL 148 (211)
T ss_dssp CTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEE
T ss_pred CCcCEEEEEeecccchHHHHHHHHHHHHCCCcEE
Confidence 36788999976 78999999999999998764
No 163
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=46.40 E-value=23 Score=30.02 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCh---hHHHHHHHHHHcCCceEE
Q 030411 136 PESKLLVVCQEGL---RSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 136 ~~~~iviyC~~g~---rs~~aa~~L~~~G~~~v~ 166 (178)
+.++|+|+|..|+ ....+|++|...||+ |.
T Consensus 51 ~~~~v~VlcG~GNNGGDGlv~AR~L~~~G~~-V~ 83 (502)
T 3rss_A 51 SDYRFLVLCGGGNNGGDGFVVARNLLGVVKD-VL 83 (502)
T ss_dssp TTCEEEEEECSSHHHHHHHHHHHHHTTTSSE-EE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCCCe-EE
Confidence 4678999998655 567899999999996 54
No 164
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367}
Probab=46.22 E-value=85 Score=24.45 Aligned_cols=93 Identities=10% Similarity=0.140 Sum_probs=51.2
Q ss_pred CceeeCHHHHHHHhhcCCeEEE-eeCChhhhhhccCCCeEEecccccccCCcchhhhhhcccccccccccCCCCCCCChH
Q 030411 47 DVNYVNAEEAKNLIAVERYAVL-DVRDNSQYNRAHIKSSYHVPLFIENQDNDLGTIIKRTVHNNFSGLFFGLPFTKQNPE 125 (178)
Q Consensus 47 ~~~~Is~~e~~~~l~~~~~~lI-DvR~~~e~~~ghIpgAvnip~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 125 (178)
....||...+. .+++-++++. |.|.....-...-++.--+++.... ..+
T Consensus 27 ~~~~lT~rA~~-~L~~aDvI~~edtr~~~~lL~~~~~~~~~i~~~~~~-----------------------------~~~ 76 (296)
T 3kwp_A 27 NLDDMTFRAVK-TLTAVDLIAAEDTRNTQKLLNHFEITTKQISFHEHN-----------------------------TQE 76 (296)
T ss_dssp CGGGCCHHHHH-HHHHSSEEEESCHHHHHHHHHHTTCCCEEEECSTTT-----------------------------HHH
T ss_pred CccchhhHHHH-HHhHhhhhhhhccccHHHHhhheeeeeeeeehhhcc-----------------------------hhh
Confidence 44568877654 4555688888 7775444332111222223322110 022
Q ss_pred HHHHHHhcCCCCCeEEEEcCCC-----hhHHHHHHHHHHcCCceEEEecc
Q 030411 126 FVQSVKSQFSPESKLLVVCQEG-----LRSAAAANKLEEAGFQNIACITS 170 (178)
Q Consensus 126 ~~~~~~~~~~~~~~iviyC~~g-----~rs~~aa~~L~~~G~~~v~~l~G 170 (178)
..+...+.+..+++|++.+++| .........+.+.|++ |.++.|
T Consensus 77 ~~~~li~~l~~G~~Va~lsdaGdP~i~~~g~~lv~~~~~~gi~-v~viPG 125 (296)
T 3kwp_A 77 RIPQLIAKLKQGMQIAQVSDAGMPSISDPGHELVNACIDAHIP-VVPLPG 125 (296)
T ss_dssp HHHHHHHHHHTTCEEEEECSSBCTTSSHHHHHHHHHHHHTTCC-EEECCC
T ss_pred HhHHHHHHHhcCceEEEeccCCCCCCCCCchHHHHHHHHcCCC-eeeCCC
Confidence 3344444445677888887544 2455677778888885 777765
No 165
>1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase, transferase; 2.65A {Methanocaldococcus jannaschii} SCOP: c.61.1.2 c.61.1.2 PDB: 1u9z_A*
Probab=46.12 E-value=24 Score=27.48 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=27.7
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
++++++++++ +|.+...++..|++.|-+.|+.+
T Consensus 204 ~Gk~VlIVDDii~TG~Tl~~aa~~Lk~~Ga~~V~~~ 239 (284)
T 1u9y_A 204 KDRDVFIVDDIISTGGTMATAVKLLKEQGAKKIIAA 239 (284)
T ss_dssp TTCCEEEEEEECSSSHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCEEEEEecccCchHHHHHHHHHHHHCCCcEEEEE
Confidence 4678999876 78899999999999999877743
No 166
>2ywu_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold, structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus thermophilus} PDB: 2ywt_A* 2yws_A* 3acb_A 3acc_A* 3acd_A*
Probab=45.51 E-value=27 Score=25.18 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=26.3
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~ 166 (178)
++++|+|+++ +|.+...++..|++.|-+.+.
T Consensus 94 ~gk~vliVDDii~TG~Tl~~~~~~l~~~g~~~v~ 127 (181)
T 2ywu_A 94 HGRDVIVVEDIVDTGLTLSYLLDYLEARKPASVR 127 (181)
T ss_dssp TTCEEEEEEEEESSSHHHHHHHHHHHTTCCSEEE
T ss_pred CCCEEEEECCeeCChHHHHHHHHHHHhcCCcEEE
Confidence 5788999876 799999999999999987655
No 167
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=45.24 E-value=9.2 Score=25.19 Aligned_cols=28 Identities=14% Similarity=0.427 Sum_probs=18.1
Q ss_pred CCCeEEEEcCCChhHHHHHHH----HHHcCCc
Q 030411 136 PESKLLVVCQEGLRSAAAANK----LEEAGFQ 163 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~----L~~~G~~ 163 (178)
+.-+|++.|.+|..+..++.. +.+.|++
T Consensus 3 ~~mkIlvvC~~G~~TSll~~kl~~~~~~~gi~ 34 (109)
T 2l2q_A 3 GSMNILLVCGAGMSTSMLVQRIEKYAKSKNIN 34 (109)
T ss_dssp CCEEEEEESSSSCSSCHHHHHHHHHHHHHTCS
T ss_pred CceEEEEECCChHhHHHHHHHHHHHHHHCCCC
Confidence 445699999988754444444 5556764
No 168
>2e55_A Uracil phosphoribosyltransferase; structural genomics; 2.15A {Aquifex aeolicus}
Probab=44.49 E-value=29 Score=25.77 Aligned_cols=33 Identities=6% Similarity=0.067 Sum_probs=27.0
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
.++.++++++ +|.....+...|++.|.++|+++
T Consensus 120 ~~r~vilvDd~laTG~T~~~ai~~L~~~G~~~I~~~ 155 (208)
T 2e55_A 120 KGKIVVILDPMLATGGTLEVALREILKHSPLKVKSV 155 (208)
T ss_dssp BTSEEEEECSEESSSHHHHHHHHHHHTTCBSEEEEE
T ss_pred CCCEEEEECCccccHHHHHHHHHHHHHcCCCEEEEE
Confidence 3567888876 78888999999999999887643
No 169
>2wns_A Orotate phosphoribosyltransferase; alternative splicing, multifunctional enzyme, lyase, polymorphism, decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo sapiens}
Probab=44.28 E-value=25 Score=25.72 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=26.9
Q ss_pred CCCCeEEEEcC---CChhHHHHHHHHHHcCCceEE
Q 030411 135 SPESKLLVVCQ---EGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 135 ~~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~ 166 (178)
.++++|+|+++ +|.....++..|++.|.+.|.
T Consensus 109 ~~gk~VliVDDvitTG~Tl~~a~~~L~~~Ga~~v~ 143 (205)
T 2wns_A 109 NPGETCLIIEDVVTSGSSVLETVEVLQKEGLKVTD 143 (205)
T ss_dssp CTTCBEEEEEEEESSSHHHHHHHHHHHHTTCBCCE
T ss_pred CCCCEEEEEEEeccccHHHHHHHHHHHHCCCEEEE
Confidence 46889999987 789989999999999987554
No 170
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=44.15 E-value=85 Score=24.20 Aligned_cols=40 Identities=15% Similarity=0.255 Sum_probs=29.2
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceE
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNI 165 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v 165 (178)
.+........++.+ +++++.+|..+..-...|...|++.+
T Consensus 191 l~~t~~L~~~ip~~--~~~VsESGI~t~~dv~~l~~~G~~a~ 230 (258)
T 4a29_A 191 KENQRKLISMIPSN--VVKVAKLGISERNEIEELRKLGVNAF 230 (258)
T ss_dssp HHHHHHHHTTSCTT--SEEEEEESSCCHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHhhCCCC--CEEEEcCCCCCHHHHHHHHHCCCCEE
Confidence 34444555666654 56778899999988899999999743
No 171
>1qb7_A APRT, adenine phosphoribosyltransferase; dinucleotide binding fold; HET: ADE CIT; 1.50A {Leishmania donovani} SCOP: c.61.1.1 PDB: 1qb8_A* 1qcc_A* 1qcd_A 1mzv_A*
Probab=43.90 E-value=31 Score=25.90 Aligned_cols=32 Identities=9% Similarity=0.154 Sum_probs=27.1
Q ss_pred CCCCeEEEEcC---CChhHHHHHHHHHHcCCceEE
Q 030411 135 SPESKLLVVCQ---EGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 135 ~~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~ 166 (178)
.++++|+|+++ +|.+...++..|++.|.+.|.
T Consensus 136 ~~Gk~VLIVDDvitTG~Tl~~a~~~L~~~Ga~~v~ 170 (236)
T 1qb7_A 136 GKGSRVVLIDDVLATGGTALSGLQLVEASDAVVVE 170 (236)
T ss_dssp CTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEEE
T ss_pred CCcCEEEEEecccccHHHHHHHHHHHHHcCCeEEE
Confidence 46889999987 799999999999999987654
No 172
>2yzk_A OPRT, oprtase, orotate phosphoribosyltransferase; rossmann fold, glycosyltransferase, magnesium, pyrimidine biosynthesis, structural genomics; 1.80A {Aeropyrum pernix}
Probab=43.20 E-value=31 Score=24.58 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=26.2
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~ 166 (178)
++++|+++++ +|.+...++..|++.|.+.+.
T Consensus 105 ~gk~VllVDDvitTG~Tl~~~~~~L~~~Ga~~v~ 138 (178)
T 2yzk_A 105 PKGRVVVVDDVATTGTSIAKSIEVLRSNGYTVGT 138 (178)
T ss_dssp CSSEEEEEEEEESSSHHHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEEEEeccCCcHHHHHHHHHHHHcCCeEEE
Confidence 6889999987 789999999999999976443
No 173
>1w30_A PYRR bifunctional protein; transferase, glycosyltransferase, PSI, protein structure initiative, TB structural genomics consortium, TB; 1.9A {Mycobacterium tuberculosis} SCOP: c.61.1.1
Probab=43.12 E-value=30 Score=25.30 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=26.2
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcC-CceEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAG-FQNIA 166 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G-~~~v~ 166 (178)
++++|+|+++ +|.+...++..|++.| -+.|+
T Consensus 111 ~gk~VlLVDDVitTG~Tl~aa~~~L~~~G~a~~V~ 145 (201)
T 1w30_A 111 DDALVILVDDVLYSGRSVRSALDALRDVGRPRAVQ 145 (201)
T ss_dssp TTCEEEEEEEEESSSHHHHHHHHHHHHHCCCSEEE
T ss_pred CCCEEEEECCccchHHHHHHHHHHHHhCCCCcEEE
Confidence 5678999987 7999999999999999 77664
No 174
>3hvu_A Hypoxanthine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase, 2-(N-morphol ethanesulfonic acid (MES), IDP01892; HET: MES; 1.95A {Bacillus anthracis str} PDB: 3h83_A* 3kb8_A*
Probab=43.10 E-value=34 Score=25.30 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=26.2
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~ 166 (178)
++++|+|+++ +|.+...++..|++.|-+.|.
T Consensus 115 ~gk~VliVDDii~TG~Tl~~~~~~l~~~g~~~v~ 148 (204)
T 3hvu_A 115 EGRDILIVEDIIDSGLTLSYLVDLFKYRKAKSVK 148 (204)
T ss_dssp TTCEEEEEEEEESSCHHHHHHHHHHHHTTCSEEE
T ss_pred CCCEEEEEeceeCchHHHHHHHHHHHHcCCCEEE
Confidence 5788999876 799999999999999987655
No 175
>2jbh_A Phosphoribosyltransferase domain-containing prote; glycosyltransferase, purine salvage; HET: 5GP; 1.7A {Homo sapiens}
Probab=42.97 E-value=29 Score=25.87 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=26.5
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~ 166 (178)
++++|+|+++ +|.+...+...|++.|-+.|.
T Consensus 133 ~Gk~VllVDDii~TG~Tl~~a~~~L~~~ga~~V~ 166 (225)
T 2jbh_A 133 AGKNVLIVEDVVGTGRTMKALLSNIEKYKPNMIK 166 (225)
T ss_dssp TTSEEEEEEEEESSSHHHHHHHHHHHTTCCSEEE
T ss_pred CCCEEEEEccccCcHHHHHHHHHHHHhcCCCEEE
Confidence 5788999986 799999999999999987665
No 176
>3ohp_A Hypoxanthine phosphoribosyltransferase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Vibrio cholerae} SCOP: c.61.1.1 PDB: 1g9s_A* 1g9t_A* 1grv_A 1j7j_A
Probab=42.77 E-value=31 Score=24.77 Aligned_cols=32 Identities=16% Similarity=0.084 Sum_probs=26.6
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIAC 167 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~ 167 (178)
++++|+++++ +|.+...+...|++.|-+.|.+
T Consensus 90 ~gk~vliVDDii~TG~Tl~~~~~~l~~~g~~~v~~ 124 (177)
T 3ohp_A 90 KGKDVLLVEDIIDTGNTLNKVKEILALREPKSIRI 124 (177)
T ss_dssp TTSEEEEEEEEESSCHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCEEEEEeeEeCcHHHHHHHHHHHHhcCCcEEEE
Confidence 5788999876 7889899999999999876653
No 177
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*
Probab=42.20 E-value=32 Score=29.04 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=28.4
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
++++|+|+++ +|.+...++..|++.|-+.|++.
T Consensus 358 ~Gk~VllVDDii~TG~Tl~~~~~~L~~~Ga~~V~~~ 393 (504)
T 1ecf_A 358 RDKNVLLVDDSIVRGTTSEQIIEMAREAGAKKVYLA 393 (504)
T ss_dssp TTCCEEEEESCCSSSHHHHHHHHHHHHTTCSSEEEE
T ss_pred CCCeEEEEeccccccHHHHHHHHHHHhcCCcEEEEE
Confidence 5788999988 68999999999999999877743
No 178
>4etn_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.10A {Bacillus subtilis} PDB: 4eti_A 1zgg_A
Probab=42.05 E-value=17 Score=26.56 Aligned_cols=39 Identities=21% Similarity=0.407 Sum_probs=27.0
Q ss_pred CCeEEEEcCCCh-hHHHHHHHHHHc----CCceEEEecccccccc
Q 030411 137 ESKLLVVCQEGL-RSAAAANKLEEA----GFQNIACITSGLQTVK 176 (178)
Q Consensus 137 ~~~iviyC~~g~-rs~~aa~~L~~~----G~~~v~~l~GG~~~w~ 176 (178)
..+|+|+|.+.. ||..|..+|+.+ |. ++.+..-|..+|.
T Consensus 34 ~~~VLFVC~gNiCRSpmAEai~r~~~~~~g~-~~~v~SAGt~~~~ 77 (184)
T 4etn_A 34 SMDIIFVCTGNTSRSPMAEALFKSIAEREGL-NVNVRSAGVFASP 77 (184)
T ss_dssp CEEEEEEESSSSSHHHHHHHHHHHHHHHHTC-CEEEEEEETTCCT
T ss_pred CCEEEEECCCchhHHHHHHHHHHHHHHhcCC-cEEEEeeecCCcC
Confidence 357999998643 777777766654 42 4777777887773
No 179
>3rh0_A Arsenate reductase; oxidoreductase; 1.72A {Corynebacterium glutamicum}
Probab=41.86 E-value=27 Score=24.45 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=25.7
Q ss_pred CeEEEEcCCC-hhHHHHHHHHHHcCCceEEEeccccc
Q 030411 138 SKLLVVCQEG-LRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 138 ~~iviyC~~g-~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
.+|+|+|.+. -||..|..+|+.+.-+++.+..-|..
T Consensus 21 ~~VLFVC~gN~cRSpmAEal~~~~~~~~~~v~SAGt~ 57 (148)
T 3rh0_A 21 KSVLFVCVGNGGKSQMAAALAQKYASDSVEIHSAGTK 57 (148)
T ss_dssp CEEEEEESSSSSHHHHHHHHHHHHCCTTSEEEEEESS
T ss_pred CEEEEECCCchhHHHHHHHHHHHhcCCCEEEEecccC
Confidence 5799999864 48888888888875445555555553
No 180
>3o7m_A Hypoxanthine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase, salvage of nucleosides and nucleotides; HET: GOL; 1.98A {Bacillus anthracis} SCOP: c.61.1.0
Probab=41.67 E-value=32 Score=24.91 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=26.3
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~ 166 (178)
++++|+|+++ +|.+...+...|++.|-+.+.
T Consensus 93 ~gk~VliVDDii~TG~Tl~~~~~~l~~~g~~~v~ 126 (186)
T 3o7m_A 93 TGKNVIVVEDIIDSGLTLHFLKDHFFMHKPKALK 126 (186)
T ss_dssp TTSEEEEEEEEESSCHHHHHHHHHHHTTCCSEEE
T ss_pred CcCEEEEEcCeeCCcHHHHHHHHHHHhcCCcEEE
Confidence 5788999876 799999999999999987655
No 181
>1fsg_A HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase; glycosyltransferase, purine salvage; HET: PRP 9DG; 1.05A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1qk3_A* 1qk4_A* 1qk5_A* 1dbr_A
Probab=41.60 E-value=31 Score=25.84 Aligned_cols=31 Identities=16% Similarity=0.364 Sum_probs=26.5
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~ 166 (178)
++++|+|+++ +|.+...+...|++.|-+.|.
T Consensus 141 ~Gk~VLIVDDii~TG~Tl~~a~~~L~~~ga~~V~ 174 (233)
T 1fsg_A 141 RDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSMR 174 (233)
T ss_dssp TTCEEEEEEEEESSSHHHHHHHHHHHTTCCSEEE
T ss_pred CCCEEEEEccccCcHHHHHHHHHHHHhcCCCEEE
Confidence 5788999987 799999999999999987665
No 182
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=41.56 E-value=20 Score=23.78 Aligned_cols=27 Identities=19% Similarity=0.400 Sum_probs=18.4
Q ss_pred CCeEEEEcCCChhHHH-HHH----HHHHcCCc
Q 030411 137 ESKLLVVCQEGLRSAA-AAN----KLEEAGFQ 163 (178)
Q Consensus 137 ~~~iviyC~~g~rs~~-aa~----~L~~~G~~ 163 (178)
-.+|++.|.+|.-+.. ++. .+.+.|++
T Consensus 21 ~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~ 52 (113)
T 1tvm_A 21 KRKIIVACGGAVATSTMAAEEIKELCQSHNIP 52 (113)
T ss_dssp SEEEEEESCSCSSHHHHHHHHHHHHHHHTTCC
T ss_pred ccEEEEECCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 4579999999876544 444 45556875
No 183
>2l17_A Synarsc, arsenate reductase; alpha/beta sandwich, oxidoreductase; NMR {Synechocystis} PDB: 2l18_A 2l19_A
Probab=41.18 E-value=34 Score=23.26 Aligned_cols=34 Identities=32% Similarity=0.490 Sum_probs=23.6
Q ss_pred eEEEEcCCC-hhHHHHHHHHHHcCCceEEEecccc
Q 030411 139 KLLVVCQEG-LRSAAAANKLEEAGFQNIACITSGL 172 (178)
Q Consensus 139 ~iviyC~~g-~rs~~aa~~L~~~G~~~v~~l~GG~ 172 (178)
+|+|+|.+. -||..|..+|+...-+++.+...|.
T Consensus 6 ~VLFVC~gN~cRSpmAEa~~~~~~~~~~~v~SAGt 40 (134)
T 2l17_A 6 KVMFVCKRNSCRSQMAEGFAKTLGAGKIAVTSCGL 40 (134)
T ss_dssp EEEEECCSSTHHHHHHHHHHHHHSBTTEEEEEECC
T ss_pred EEEEEeCCchHHHHHHHHHHHHHcCCCEEEEcccC
Confidence 689999864 4788888888877544455555554
No 184
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis, transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h06_A 2h07_A 2h08_A
Probab=40.69 E-value=34 Score=27.33 Aligned_cols=33 Identities=24% Similarity=0.203 Sum_probs=27.9
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
++++++++++ +|.+...++..|++.|-++|+.+
T Consensus 212 ~gk~viIVDDii~TG~Tl~~a~~~L~~~Ga~~v~~~ 247 (326)
T 3s5j_B 212 KDRVAILVDDMADTCGTICHAADKLLSAGATRVYAI 247 (326)
T ss_dssp TTSEEEEEEEEESSCHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCCEEEEEccccCCcHHHHHHHHHHHHcCCCEEEEE
Confidence 5678888875 78999999999999999888754
No 185
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=40.53 E-value=24 Score=27.02 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=30.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHc-CCceEEEeccccc
Q 030411 135 SPESKLLVVCQEGLRSAAAANKLEEA-GFQNIACITSGLQ 173 (178)
Q Consensus 135 ~~~~~iviyC~~g~rs~~aa~~L~~~-G~~~v~~l~GG~~ 173 (178)
..+.++||+|+.-.........|... |+. +..+.|+..
T Consensus 110 ~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~-~~~l~G~~~ 148 (271)
T 1z5z_A 110 DEGDKIAIFTQFVDMGKIIRNIIEKELNTE-VPFLYGELS 148 (271)
T ss_dssp HTTCCEEEEESCHHHHHHHHHHHHHHHCSC-CCEECTTSC
T ss_pred hCCCeEEEEeccHHHHHHHHHHHHHhcCCc-EEEEECCCC
Confidence 45778999999877777888888874 885 778888764
No 186
>1jf8_A Arsenate reductase; ptpase I fold, P-loop, sulfinic acid, oxidoreductase; 1.12A {Staphylococcus aureus} SCOP: c.44.1.1 PDB: 1jfv_A 2fxi_A 1lju_A* 1rxi_A 1rxe_A 1ljl_A 2cd7_A 1lk0_A
Probab=40.24 E-value=34 Score=23.18 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=25.7
Q ss_pred CeEEEEcCCC-hhHHHHHHHHHHcCCceEEEecccccc
Q 030411 138 SKLLVVCQEG-LRSAAAANKLEEAGFQNIACITSGLQT 174 (178)
Q Consensus 138 ~~iviyC~~g-~rs~~aa~~L~~~G~~~v~~l~GG~~~ 174 (178)
++|+|+|.+. -||..|..+|+...-.++.+...|...
T Consensus 4 ~~VLFVC~gN~cRSpmAEa~~~~~~~~~~~v~SAGt~~ 41 (131)
T 1jf8_A 4 KTIYFISTGNSARSQMAEGWGKEILGEGWNVYSAGIET 41 (131)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHSTTTEEEEEEESSC
T ss_pred CEEEEEcCCcchHHHHHHHHHHHhcCCCEEEEcCcCCC
Confidence 4799999864 488888888887643446666666543
No 187
>2ps1_A Orotate phosphoribosyltransferase 1; alpha beta, oprtase-OA-PRPP complex; HET: ORO PRP; 1.75A {Saccharomyces cerevisiae} PDB: 2pry_A* 2prz_A*
Probab=39.84 E-value=36 Score=25.31 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=26.1
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~ 166 (178)
++++|+|+++ +|.....++..|++.|.+.+.
T Consensus 124 ~Gk~VlIVDDvitTG~Tl~~a~~~L~~~Ga~~v~ 157 (226)
T 2ps1_A 124 ENKRILIIDDVMTAGTAINEAFEIISNAKGQVVG 157 (226)
T ss_dssp TTCEEEEEEEEESSSHHHHHHHHHHHHTTCEEEE
T ss_pred CcCEEEEEEecccChHHHHHHHHHHHHcCCeEEE
Confidence 6788999987 788989999999999986543
No 188
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics, RI structural genomics/proteomics initiative; 2.10A {Thermus thermophilus} SCOP: c.61.1.1
Probab=39.26 E-value=30 Score=25.68 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=26.3
Q ss_pred CCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 137 ESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 137 ~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
++.++++++ +|.....+.+.|++.|.++|+++
T Consensus 123 ~r~vilvDd~laTG~T~~~ai~~L~~~G~~~I~~~ 157 (208)
T 1v9s_A 123 ERRAFLLDPMLATGGSASLALSLLKERGATGVKLM 157 (208)
T ss_dssp GSCEEEECSEESSSHHHHHHHHHHHHTTCCSCEEE
T ss_pred CCEEEEECCccccHHHHHHHHHHHHHcCCCEEEEE
Confidence 567888876 78888999999999998877643
No 189
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle structural genomics center for infectious disease, magnesium, metal binding; HET: AMP; 2.30A {Burkholderia pseudomallei}
Probab=38.96 E-value=37 Score=27.00 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=27.9
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
++++++++++ +|.+...++..|++.|-+.|+.+
T Consensus 215 ~gk~viiVDDii~TG~Tl~~a~~~L~~~Ga~~v~~~ 250 (319)
T 3dah_A 215 EGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVFAY 250 (319)
T ss_dssp CCSEEEEEEEEESSCHHHHHHHHHHHHTTCSCEEEE
T ss_pred CCCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEE
Confidence 5778999876 78999999999999999887754
No 190
>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A {Escherichia coli}
Probab=38.40 E-value=34 Score=25.42 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=26.3
Q ss_pred CCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 137 ESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 137 ~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
++.|+++++ +|.....+...|++.|.++|.++
T Consensus 123 ~r~VilvDd~laTG~T~~~ai~~L~~~G~~~I~~~ 157 (208)
T 2ehj_A 123 ERMALIVDPMLATGGSVIATIDLLKKAGCSSIKVL 157 (208)
T ss_dssp GCEEEEEEEEESSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEECCccccHHHHHHHHHHHHHcCCCEEEEE
Confidence 567888876 78888999999999998877643
No 191
>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase; glycosyltransferase, MAGN pyrimidine biosynthesis; 2.40A {Streptococcus mutans}
Probab=38.33 E-value=43 Score=25.45 Aligned_cols=33 Identities=12% Similarity=0.211 Sum_probs=27.3
Q ss_pred CCCCCeEEEEcC---CChhHHHHHHHHHHcCCceEE
Q 030411 134 FSPESKLLVVCQ---EGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 134 ~~~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~ 166 (178)
+.++++|+|+++ +|.....++..|++.|.+.+.
T Consensus 146 ~~~Gk~VLIVDDvitTG~Tl~~a~~~L~~~Ga~vv~ 181 (243)
T 3dez_A 146 VTKGQKMVIIEDLISTGGSVLDAVAAAQREGADVLG 181 (243)
T ss_dssp CCTTCEEEEEEEEESSSHHHHHHHHHHHHTTCEEEE
T ss_pred cCCCCEEEEEEeeccccHHHHHHHHHHHHCCCEEEE
Confidence 357889999987 788999999999999986544
No 192
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A
Probab=38.09 E-value=1.2e+02 Score=22.88 Aligned_cols=35 Identities=3% Similarity=0.017 Sum_probs=20.6
Q ss_pred CCCCeEEEEcCC--C--hhHHHHHHHHHHcCCceEEEecc
Q 030411 135 SPESKLLVVCQE--G--LRSAAAANKLEEAGFQNIACITS 170 (178)
Q Consensus 135 ~~~~~iviyC~~--g--~rs~~aa~~L~~~G~~~v~~l~G 170 (178)
..+++|++.+.+ + .........|.+.|++ +.++.|
T Consensus 74 ~~G~~Va~L~~GDP~iyg~~~~l~~~l~~~gi~-veviPG 112 (264)
T 3ndc_A 74 AAGQDVARLHSGDLSIWSAMGEQLRRLRALNIP-YDVTPG 112 (264)
T ss_dssp HHTCCEEEEESBCTTSSCSHHHHHHHHHHTTCC-EEEECC
T ss_pred HCCCeEEEEeCCCCccccHHHHHHHHHHhCCCC-EEEeCC
Confidence 346667777642 1 1345566677777775 666654
No 193
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=37.70 E-value=57 Score=26.43 Aligned_cols=34 Identities=18% Similarity=0.124 Sum_probs=29.4
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 139 KLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 139 ~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
+++|+|++-..+...+..|...|+. +..+.|++.
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~~~~-~~~lhg~~~ 335 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEKEFP-TTSIHGDRL 335 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCC-EEEESTTSC
T ss_pred CEEEEEeCcHHHHHHHHHHHhCCCC-EEEEeCCCC
Confidence 4999999988888999999999996 888888764
No 194
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=37.52 E-value=33 Score=30.23 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
+..+++|||++-..+..++..|.+.|++ +..+-|++.
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~-v~~lHG~l~ 431 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGIN-AVAYYRGLD 431 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCC-EEEECTTSC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCc-EEEecCCCC
Confidence 4678999999988888999999999985 888888875
No 195
>3lrt_A Ribose-phosphate pyrophosphokinase; phosphoribosyl transferase, ATP analog binding, ATP-binding, metal-binding, nucleotide biosynthesis; HET: ADP; 1.53A {Thermoplasma volcanium} PDB: 3lpn_A* 3nag_A* 3mbi_A*
Probab=36.94 E-value=44 Score=26.07 Aligned_cols=33 Identities=30% Similarity=0.297 Sum_probs=27.5
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
++++++++++ +|.+...++..|++.|-+.|+.+
T Consensus 202 ~gk~vliVDDii~TG~Tl~~a~~~L~~~Ga~~v~~~ 237 (286)
T 3lrt_A 202 NGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVS 237 (286)
T ss_dssp TTCEEEEEEEEESSCHHHHHHHHHHHHTTCSEEEEE
T ss_pred CcCEEEEEeccccccHHHHHHHHHHHhCCCCEEEEE
Confidence 5778999876 78899999999999999877643
No 196
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=36.73 E-value=25 Score=23.04 Aligned_cols=26 Identities=8% Similarity=0.234 Sum_probs=18.5
Q ss_pred CeEEEEcCCChhHHHHHH----HHHHcCCc
Q 030411 138 SKLLVVCQEGLRSAAAAN----KLEEAGFQ 163 (178)
Q Consensus 138 ~~iviyC~~g~rs~~aa~----~L~~~G~~ 163 (178)
.+|++.|.+|..+..++. .+++.|++
T Consensus 4 kkIll~Cg~G~sTS~l~~k~~~~~~~~gi~ 33 (106)
T 1e2b_A 4 KHIYLFSSAGMSTSLLVSKMRAQAEKYEVP 33 (106)
T ss_dssp EEEEEECSSSTTTHHHHHHHHHHHHHSCCS
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCC
Confidence 479999998876555444 45667875
No 197
>3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, structural genomics, infectious diseases; 1.75A {Bacillus anthracis} PDB: 3osc_A*
Probab=36.43 E-value=49 Score=24.98 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=27.1
Q ss_pred CCCCCeEEEEcC---CChhHHHHHHHHHHcCCceEE
Q 030411 134 FSPESKLLVVCQ---EGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 134 ~~~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~ 166 (178)
+.++++|+|+++ +|.....++..|++.|.+.+.
T Consensus 134 ~~~Gk~VLIVDDvitTG~Tl~~a~~~L~~~Ga~vv~ 169 (234)
T 3m3h_A 134 AEKGQKVVVVEDLISTGGSAITCVEALREAGCEVLG 169 (234)
T ss_dssp CCTTCEEEEEEEEESSSHHHHHHHHHHHHTTCEEEE
T ss_pred cCCCCEEEEEecccchhHHHHHHHHHHHHCCCEEEE
Confidence 347889999986 788999999999999986543
No 198
>1z7g_A HGPRT, HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase; flexibility, trans CIS peptide bond isomerization, nucleotide binding; 1.90A {Homo sapiens} SCOP: c.61.1.1 PDB: 1hmp_A* 1bzy_A 3gep_A* 3ggc_A* 3ggj_A* 1d6n_A* 2vfa_A*
Probab=36.27 E-value=34 Score=25.32 Aligned_cols=31 Identities=10% Similarity=0.113 Sum_probs=25.9
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~ 166 (178)
++++|+|+++ +|.+...+...|++.|-+.|.
T Consensus 125 ~gk~VliVDDii~TG~Tl~~~~~~L~~~g~~~v~ 158 (217)
T 1z7g_A 125 TGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVK 158 (217)
T ss_dssp TTSEEEEEEEECCCHHHHHHHHHHHHTTCCSEEE
T ss_pred CCCEEEEEeceeCcHHHHHHHHHHHHhcCCCEEE
Confidence 5778999876 788888999999999987665
No 199
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=35.75 E-value=21 Score=29.30 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=24.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQ 163 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~ 163 (178)
.+.++++.+.+|..|..++..|.+.|++
T Consensus 186 ~~~kvlvalSGGvDS~vll~ll~~~G~~ 213 (413)
T 2c5s_A 186 VGGKVMVLLSGGIDSPVAAYLTMKRGVS 213 (413)
T ss_dssp TTEEEEEECCSSSHHHHHHHHHHHBTEE
T ss_pred CCCeEEEEeCCCChHHHHHHHHHHcCCc
Confidence 3567888888999999999999999975
No 200
>2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2; phosphorylation, nucleotide biosynthesis, transferase; 2.55A {Homo sapiens} PDB: 2c4k_A*
Probab=35.72 E-value=44 Score=27.21 Aligned_cols=33 Identities=24% Similarity=0.167 Sum_probs=27.8
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEEEe
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
+++++||+++ +|.+...++..|++.|-+.|+.+
T Consensus 271 ~Gk~viiVDDii~TG~Tl~~a~~~L~~~Ga~~v~~~ 306 (379)
T 2ji4_A 271 GGRIAIIVDDIIDDVDSFLAAAETLKERGAYKIFVM 306 (379)
T ss_dssp TTSEEEEEEEEECSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEecCCCchHHHHHHHHHHHhcCCCEEEEE
Confidence 5678899876 78999999999999999887744
No 201
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=35.45 E-value=44 Score=23.93 Aligned_cols=47 Identities=21% Similarity=0.354 Sum_probs=32.3
Q ss_pred HHHhcCCCCCeEEEEcCCCh--hHHHHHHHHHHc---CCceEEEecccccccc
Q 030411 129 SVKSQFSPESKLLVVCQEGL--RSAAAANKLEEA---GFQNIACITSGLQTVK 176 (178)
Q Consensus 129 ~~~~~~~~~~~iviyC~~g~--rs~~aa~~L~~~---G~~~v~~l~GG~~~w~ 176 (178)
..+..++++.-+|+.|..|. .|...|..|.+. | .++..+-||-.++.
T Consensus 57 ~il~~i~~~~~vI~LD~~Gk~~sS~~fA~~l~~~~~~G-~~i~FvIGGa~Gl~ 108 (163)
T 1o6d_A 57 DLTNRILPGSFVMVMDKRGEEVSSEEFADFLKDLEMKG-KDITILIGGPYGLN 108 (163)
T ss_dssp HHHTTCCTTCEEEEEEEEEEECCHHHHHHHHHHHHHHT-CCEEEEECCTTCCC
T ss_pred HHHHhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcC-CeEEEEEECCCCCC
Confidence 34555666655788887664 577888777654 7 67888888876553
No 202
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=35.03 E-value=24 Score=27.96 Aligned_cols=37 Identities=5% Similarity=0.205 Sum_probs=28.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
...+++|+|++-..+..++..|...|+. +..+.|++.
T Consensus 279 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~h~~~~ 315 (414)
T 3eiq_A 279 TITQAVIFINTRRKVDWLTEKMHARDFT-VSAMHGDMD 315 (414)
T ss_dssp CCSSCEEECSCHHHHHHHHHHHHTTTCC-CEEC---CH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHhcCCe-EEEecCCCC
Confidence 3457999999988888999999999986 778888764
No 203
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis}
Probab=34.64 E-value=52 Score=23.50 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=26.5
Q ss_pred CeEEEEcCCC-hhHHHHHHHHH----HcCCc-eEEEeccccccccC
Q 030411 138 SKLLVVCQEG-LRSAAAANKLE----EAGFQ-NIACITSGLQTVKP 177 (178)
Q Consensus 138 ~~iviyC~~g-~rs~~aa~~L~----~~G~~-~v~~l~GG~~~w~~ 177 (178)
.+|+|+|.+. -||..|...|+ +.|.. ++.+-.-|..+|..
T Consensus 19 ~kVLFVCtGNiCRSpmAE~i~r~~~~~~gl~~~~~v~SAGt~~~~~ 64 (173)
T 4etm_A 19 ISVLFVCLGNICRSPMAEAIFRDLAAKKGLEGKIKADSAGIGGWHI 64 (173)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHTTCTTTEEEEEEESSCTTT
T ss_pred cEEEEEeCCcchhhHHHHHHHHHHHHHcCCCCceEEeccccccCCC
Confidence 5799999753 37776666554 34654 46666678888753
No 204
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=34.54 E-value=32 Score=23.28 Aligned_cols=27 Identities=37% Similarity=0.730 Sum_probs=18.6
Q ss_pred CCCeEEEEcCCChhHHHH-HH----HHHHcCC
Q 030411 136 PESKLLVVCQEGLRSAAA-AN----KLEEAGF 162 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~a-a~----~L~~~G~ 162 (178)
+-.+|+++|.+|.-+... +. .|.+.|+
T Consensus 12 ~~kkIlvVC~sGmgTS~ml~~klkk~~~e~gi 43 (125)
T 1vkr_A 12 HVRKIIVACDAGMGSSAMGAGVLRKKIQDAGL 43 (125)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHHHHHHHHTTC
T ss_pred cccEEEEECCCcHHHHHHHHHHHHHHHHHCCC
Confidence 346799999999865544 33 4555687
No 205
>1d5r_A Phosphoinositide phosphotase PTEN; C2 domain, phosphotidylinositol, hydrolase; HET: TLA; 2.10A {Homo sapiens} SCOP: b.7.1.1 c.45.1.1
Probab=34.45 E-value=1.6e+02 Score=22.91 Aligned_cols=41 Identities=12% Similarity=0.302 Sum_probs=23.2
Q ss_pred eCHHHHHHHhhc---CCeEEEeeCChhhhhhccCC-CeEEecccc
Q 030411 51 VNAEEAKNLIAV---ERYAVLDVRDNSQYNRAHIK-SSYHVPLFI 91 (178)
Q Consensus 51 Is~~e~~~~l~~---~~~~lIDvR~~~e~~~ghIp-gAvnip~~~ 91 (178)
-...++..+++. +.+.++++..+..|...... .-+++|+.+
T Consensus 42 ~~i~~Vv~~l~~~~~~~~~v~nl~~e~~y~~~~~~~~~~~~~~~D 86 (324)
T 1d5r_A 42 NNIDDVVRFLDSKHKNHYKIYNLCAERHYDTAKFNCRVAQYPFED 86 (324)
T ss_dssp CBHHHHHHHHHHHSSSCEEEEEEESSCCCCTTSCSSCEEEEEECT
T ss_pred cCHHHHHHHHHhcCCCcEEEEEcCCCCCCChHHhCCeEEEEeecC
Confidence 456677666643 46789999654444433222 234666653
No 206
>3fpn_A Geobacillus stearothermophilus UVRA interaction domain; UVRA, nucleotide excision repair, DNA repair, DNA binding protein; 1.80A {Geobacillus stearothermophilus}
Probab=34.03 E-value=82 Score=21.13 Aligned_cols=40 Identities=13% Similarity=0.395 Sum_probs=27.7
Q ss_pred HHHHHHhcCCCCCeEEEEcC-----CChhHHHHHHHHHHcCCceEEE
Q 030411 126 FVQSVKSQFSPESKLLVVCQ-----EGLRSAAAANKLEEAGFQNIAC 167 (178)
Q Consensus 126 ~~~~~~~~~~~~~~iviyC~-----~g~rs~~aa~~L~~~G~~~v~~ 167 (178)
.++..+ .++.++++.|..+ .|. -......|++.||.++.+
T Consensus 9 ivd~il-~~~egtri~iLAPvv~~rKg~-~~~ll~~l~~~Gf~Rvrv 53 (119)
T 3fpn_A 9 MVDRLL-SYPERTKMQILAPIVSGKKGT-HAKTLEDIRKQGYVRVRI 53 (119)
T ss_dssp HHHHHH-TSCTTCEEEEEEEEEEEECSC-CHHHHHHHHHTTCCEEEE
T ss_pred HHHHHH-hCCCCCEEEEEEEEeeCCCCc-HHHHHHHHHhCCCeEEEE
Confidence 444433 4677889988876 232 357788899999987654
No 207
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=33.32 E-value=26 Score=26.50 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTV 175 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w 175 (178)
++++.....+.++..+++++............|.+.||..+..++--...|
T Consensus 194 ~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~ 244 (277)
T 1o54_A 194 NYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWESLFRPY 244 (277)
T ss_dssp GTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEEECCCCCCE
T ss_pred HHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCceeEEEEEeeeee
Confidence 667776677778888999988655666777888899998777665444444
No 208
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} SCOP: c.61.1.1
Probab=32.88 E-value=59 Score=24.27 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=25.7
Q ss_pred CCeEEEEcC---CChhHHHHHHHHHHcCC--ceEEEe
Q 030411 137 ESKLLVVCQ---EGLRSAAAANKLEEAGF--QNIACI 168 (178)
Q Consensus 137 ~~~iviyC~---~g~rs~~aa~~L~~~G~--~~v~~l 168 (178)
++.|++.++ +|.....+...|++.|. ++|.++
T Consensus 129 ~~~VilvD~~laTG~T~~~ai~~L~~~G~pe~~I~~~ 165 (217)
T 3dmp_A 129 DRIFILCDPMVATGYSAAHAIDVLKRRGVPGERLMFL 165 (217)
T ss_dssp TCEEEEECSEESSSHHHHHHHHHHHTTTCCGGGEEEE
T ss_pred CCEEEEEcCcccccHHHHHHHHHHHHcCCCcCeEEEE
Confidence 467788766 78888899999999998 777644
No 209
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=32.33 E-value=71 Score=26.25 Aligned_cols=51 Identities=6% Similarity=0.031 Sum_probs=33.5
Q ss_pred HHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc--------CCceEEEecccccccc
Q 030411 126 FVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA--------GFQNIACITSGLQTVK 176 (178)
Q Consensus 126 ~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~--------G~~~v~~l~GG~~~w~ 176 (178)
+.+.+.+..+.+..-|++|++|..+..++-.+... |-++|...+++|.++.
T Consensus 104 lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t 162 (472)
T 3hmu_A 104 LAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGST 162 (472)
T ss_dssp HHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSS
T ss_pred HHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCcc
Confidence 34444444544455688899998888766655443 4566888899888763
No 210
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=32.33 E-value=97 Score=21.73 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=31.3
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCC
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGF 162 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~ 162 (178)
.++++.....+.++..+++.+..-.........|.+.||
T Consensus 122 ~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~ 160 (204)
T 3e05_A 122 EEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGY 160 (204)
T ss_dssp HHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCC
Confidence 567777777788898888887765566678888999998
No 211
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=31.91 E-value=40 Score=25.28 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=20.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEec
Q 030411 137 ESKLLVVCQEGLRSAAAANKLEEAGFQNIACIT 169 (178)
Q Consensus 137 ~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~ 169 (178)
+++|+|+ .+|..+...+..|.+.|.+ |.+++
T Consensus 31 gk~VLVV-GgG~va~~ka~~Ll~~GA~-VtVva 61 (223)
T 3dfz_A 31 GRSVLVV-GGGTIATRRIKGFLQEGAA-ITVVA 61 (223)
T ss_dssp TCCEEEE-CCSHHHHHHHHHHGGGCCC-EEEEC
T ss_pred CCEEEEE-CCCHHHHHHHHHHHHCCCE-EEEEC
Confidence 5556555 4467777778888888864 66654
No 212
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile}
Probab=31.27 E-value=1.6e+02 Score=21.93 Aligned_cols=38 Identities=5% Similarity=0.115 Sum_probs=22.0
Q ss_pred hcCCCCCeEEEEcCCC----hhHHHHHHHHHHcCCceEEEecc
Q 030411 132 SQFSPESKLLVVCQEG----LRSAAAANKLEEAGFQNIACITS 170 (178)
Q Consensus 132 ~~~~~~~~iviyC~~g----~rs~~aa~~L~~~G~~~v~~l~G 170 (178)
+....+++|++.+.+. .+.......|.+.|++ +.++.|
T Consensus 72 ~~~~~g~~V~~l~~GDP~i~~~~~~l~~~l~~~gi~-veviPG 113 (253)
T 4e16_A 72 EGIENNKSVVRLQTGDFSIYGSIREQVEDLNKLNID-YDCTPG 113 (253)
T ss_dssp HHHHTTCCEEEEESBCTTTTCCHHHHHHHHHHHTCC-EEEECC
T ss_pred HHHHCCCcEEEEeCCCCccccCHHHHHHHHHHCCCC-EEEECC
Confidence 3334566777776421 2345566677777775 666664
No 213
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=30.71 E-value=55 Score=29.79 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=31.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEecccc
Q 030411 135 SPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGL 172 (178)
Q Consensus 135 ~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 172 (178)
.+.++++|.|.+-..|...+..|.+.|++ ..+|.|..
T Consensus 439 ~~gqpvLVft~sie~se~Ls~~L~~~gi~-~~vLnak~ 475 (853)
T 2fsf_A 439 AKGQPVLVGTISIEKSELVSNELTKAGIK-HNVLNAKF 475 (853)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHTTCC-CEECCTTC
T ss_pred cCCCCEEEEECcHHHHHHHHHHHHHCCCC-EEEecCCh
Confidence 46789999999988999999999999996 66777764
No 214
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=30.55 E-value=32 Score=31.26 Aligned_cols=36 Identities=14% Similarity=0.072 Sum_probs=31.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEecccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGL 172 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 172 (178)
++.+++|+|++-..+...+..|...|+. +.+|.|..
T Consensus 431 ~~~pvLVft~s~~~se~Ls~~L~~~gi~-~~vLhg~~ 466 (844)
T 1tf5_A 431 TGQPVLVGTVAVETSELISKLLKNKGIP-HQVLNAKN 466 (844)
T ss_dssp HTCCEEEEESCHHHHHHHHHHHHTTTCC-CEEECSSC
T ss_pred cCCcEEEEECCHHHHHHHHHHHHHCCCC-EEEeeCCc
Confidence 5678999999988999999999999996 67777764
No 215
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=30.50 E-value=1.9e+02 Score=22.30 Aligned_cols=40 Identities=15% Similarity=0.266 Sum_probs=28.6
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceE
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNI 165 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v 165 (178)
.+........++.+ ++++|.+|..+..-+..+.+.|++-|
T Consensus 207 l~~~~~L~~~ip~~--~~vIaesGI~t~edv~~l~~~Ga~gv 246 (272)
T 3tsm_A 207 LAVSERLAKMAPSD--RLLVGESGIFTHEDCLRLEKSGIGTF 246 (272)
T ss_dssp THHHHHHHHHSCTT--SEEEEESSCCSHHHHHHHHTTTCCEE
T ss_pred hHHHHHHHHhCCCC--CcEEEECCCCCHHHHHHHHHcCCCEE
Confidence 34444555556543 56778899988888889999998743
No 216
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=30.48 E-value=34 Score=30.90 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEecccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGL 172 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 172 (178)
++.+++|+|++-..+...+..|.+.|+. ..+|.|+.
T Consensus 473 ~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~-~~vLhgkq 508 (822)
T 3jux_A 473 KGQPVLVGTTSIEKSELLSSMLKKKGIP-HQVLNAKY 508 (822)
T ss_dssp HTCCEEEEESSHHHHHHHHHHHHTTTCC-CEEECSCH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCC-EEEeeCCc
Confidence 5789999999988999999999999996 66777763
No 217
>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D 1jlr_A* 1jls_B* 1upf_D 1upu_D*
Probab=30.41 E-value=51 Score=25.13 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=26.0
Q ss_pred CCeEEEEcC---CChhHHHHHHHHHHcCC--ceEEEe
Q 030411 137 ESKLLVVCQ---EGLRSAAAANKLEEAGF--QNIACI 168 (178)
Q Consensus 137 ~~~iviyC~---~g~rs~~aa~~L~~~G~--~~v~~l 168 (178)
++.||++++ +|.....+...|++.|. ++|.++
T Consensus 156 ~r~VilvDdmlaTG~T~~~ai~~L~~~G~~p~~I~~~ 192 (243)
T 1bd3_D 156 ERWVMLLDPMCATAGSVCKAIEVLLRLGVKEERIIFV 192 (243)
T ss_dssp GSEEEEECSEESSCHHHHHHHHHHHHHTCCGGGEEEE
T ss_pred CCEEEEECCccccHHHHHHHHHHHHHcCCCcceEEEE
Confidence 467888876 78888999999999998 776643
No 218
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=29.57 E-value=33 Score=25.28 Aligned_cols=52 Identities=13% Similarity=0.084 Sum_probs=38.4
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcC--CceEEEeccccccc
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAG--FQNIACITSGLQTV 175 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G--~~~v~~l~GG~~~w 175 (178)
.++++.....+.++..+++++............|.+.| |.++..++--...|
T Consensus 174 ~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~f~~~~~~e~~~r~~ 227 (255)
T 3mb5_A 174 ERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTINVLVFDQ 227 (255)
T ss_dssp GGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTGGGBSCCEEECCCCCCE
T ss_pred HHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCccccEEEEEeeeee
Confidence 45777777778888889999887666777888999999 88776655433333
No 219
>3ozf_A Hypoxanthine-guanine-xanthine phosphoribosyltrans; transferase-transferase inhibitor complex; HET: HPA; 1.94A {Plasmodium falciparum fcr-3} PDB: 3ozg_A* 1cjb_A*
Probab=29.53 E-value=58 Score=24.92 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=26.3
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~ 166 (178)
++++|+|+++ +|.+...+...|++.|-+.|.
T Consensus 155 ~gk~VlIVDDii~TG~Tl~~~~~~L~~~g~~~v~ 188 (250)
T 3ozf_A 155 KGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVA 188 (250)
T ss_dssp TTCEEEEEEEEESSSHHHHHHHHHHGGGCCSEEE
T ss_pred CCCEEEEEeceeCchHHHHHHHHHHHhcCCCEEE
Confidence 5788999876 799999999999999987655
No 220
>1lh0_A OMP synthase; loop closure, monomer closure, orotate phosphoribosyltransferase; HET: ORO PRP; 2.00A {Salmonella typhimurium} SCOP: c.61.1.1 PDB: 1opr_A* 1sto_A* 1oro_A
Probab=29.38 E-value=75 Score=23.26 Aligned_cols=30 Identities=10% Similarity=0.173 Sum_probs=25.1
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCceEE
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~ 166 (178)
++ +|+|+++ +|.....++..|++.|-+.+.
T Consensus 117 ~g-~VliVDDvitTG~Tl~~a~~~l~~~Ga~~v~ 149 (213)
T 1lh0_A 117 QG-RVMLVDDVITAGTAIRESMEIIQAHGATLAG 149 (213)
T ss_dssp CS-EEEEECSCCSSSCHHHHHHHHHHHTTCEEEE
T ss_pred CC-CEEEEEecccchHHHHHHHHHHHHCCCeEEE
Confidence 57 9999987 688888999999999976543
No 221
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=29.02 E-value=24 Score=26.00 Aligned_cols=52 Identities=10% Similarity=0.073 Sum_probs=36.9
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccccc
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTV 175 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w 175 (178)
.++++.....+.++..+++++............|.+.||..+...+-....|
T Consensus 178 ~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~ 229 (258)
T 2pwy_A 178 WKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRLERVLEVGWREW 229 (258)
T ss_dssp GGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCceEEEEEeeeeEe
Confidence 3677777777778888999988755666777788889998766655333333
No 222
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=28.88 E-value=1.3e+02 Score=20.12 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=23.2
Q ss_pred HHHHhcCCCCCeEEEEcCC-ChhHHHHHHHHHHcCCceEEEecc
Q 030411 128 QSVKSQFSPESKLLVVCQE-GLRSAAAANKLEEAGFQNIACITS 170 (178)
Q Consensus 128 ~~~~~~~~~~~~iviyC~~-g~rs~~aa~~L~~~G~~~v~~l~G 170 (178)
....+.++.+..|+|.|+= |..-..++..+... ..++.++.|
T Consensus 49 ~~~i~~~~~~~gvliLtDl~GGSp~n~a~~~~~~-~~~v~vi~G 91 (135)
T 1pdo_A 49 NAQLAKLDTTKGVLFLVDTWGGSPFNAASRIVVD-KEHYEVIAG 91 (135)
T ss_dssp HHHHTTSCCTTCEEEEESSTTSHHHHHHHHHHTT-CTTEEEEES
T ss_pred HHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHhc-cCCEEEEeC
Confidence 3344556666678888883 44433334444333 346777754
No 223
>1wyz_A Putative S-adenosylmethionine-dependent methyltra; northeast structural genomics consortium, BTR28, methyltrans PSI; 2.50A {Bacteroides thetaiotaomicron} SCOP: c.90.1.1
Probab=28.72 E-value=1.4e+02 Score=22.15 Aligned_cols=43 Identities=7% Similarity=0.130 Sum_probs=26.9
Q ss_pred HHHHHhcCCCCCeEEEEcCCC-----hhHHHHHHHHHHcCCceEEEecc
Q 030411 127 VQSVKSQFSPESKLLVVCQEG-----LRSAAAANKLEEAGFQNIACITS 170 (178)
Q Consensus 127 ~~~~~~~~~~~~~iviyC~~g-----~rs~~aa~~L~~~G~~~v~~l~G 170 (178)
.+...+.+..+++|++.|.+| .+.......+.+.|++ +.++.|
T Consensus 73 ~~~i~~~~~~G~~Va~ls~~GdP~i~~~g~~l~~~l~~~gi~-vevIPG 120 (242)
T 1wyz_A 73 ISGYLKPLAGGASMGVISEAGCPAVADPGADVVAIAQRQKLK-VIPLVG 120 (242)
T ss_dssp HHHHHHHHHTTCCEEEECC-------CHHHHHHHHHHHTTCC-EEECCC
T ss_pred HHHHHHHHHcCCEEEEEecCCCCcccCcHHHHHHHHHHCCCC-EEEeCc
Confidence 344444455678899887533 3445566777788885 777765
No 224
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=28.62 E-value=62 Score=27.82 Aligned_cols=34 Identities=9% Similarity=0.164 Sum_probs=26.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHc------CCceEEEeccc
Q 030411 137 ESKLLVVCQEGLRSAAAANKLEEA------GFQNIACITSG 171 (178)
Q Consensus 137 ~~~iviyC~~g~rs~~aa~~L~~~------G~~~v~~l~GG 171 (178)
+.++||||++-..+...+..|... |++ +..+.|+
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~-~~~lhg~ 439 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVK-AHHLIGA 439 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC------CEECCCS
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcc-eEEEECC
Confidence 788999999978888899999887 875 7777776
No 225
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=28.58 E-value=71 Score=28.39 Aligned_cols=39 Identities=10% Similarity=0.073 Sum_probs=31.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 134 FSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 134 ~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
...+.++||+|+.-.........|...|++ +..++|+..
T Consensus 569 ~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~-~~~i~G~~~ 607 (800)
T 3mwy_W 569 KKDGHRVLIFSQMVRMLDILGDYLSIKGIN-FQRLDGTVP 607 (800)
T ss_dssp TTTTCCEEEEESCHHHHHHHHHHHHHHTCC-CEEESTTSC
T ss_pred hhCCCeEEEEechHHHHHHHHHHHHhCCCC-EEEEeCCCC
Confidence 356789999999867777888899999996 778898864
No 226
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=28.24 E-value=76 Score=25.54 Aligned_cols=49 Identities=10% Similarity=0.106 Sum_probs=31.8
Q ss_pred HHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHH-----c---CCceEEEeccccccc
Q 030411 126 FVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEE-----A---GFQNIACITSGLQTV 175 (178)
Q Consensus 126 ~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~-----~---G~~~v~~l~GG~~~w 175 (178)
+.+.+.+..+.+.. |++|++|..+..++-.+.. . |-+.|...+++|.++
T Consensus 96 la~~l~~~~~~~~~-v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~ 152 (452)
T 3n5m_A 96 LAEKLNEWLGGEYV-IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGN 152 (452)
T ss_dssp HHHHHHHHHTSCEE-EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCS
T ss_pred HHHHHHHhCCCCce-EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCC
Confidence 33333333444445 8889999888877665544 3 556788888888765
No 227
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=28.13 E-value=70 Score=20.09 Aligned_cols=31 Identities=32% Similarity=0.342 Sum_probs=14.2
Q ss_pred eEEEEcCCChhHHHHHHHHHHcCCceEEEec
Q 030411 139 KLLVVCQEGLRSAAAANKLEEAGFQNIACIT 169 (178)
Q Consensus 139 ~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~ 169 (178)
+|+++++...........|...||..+....
T Consensus 6 ~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~ 36 (128)
T 1jbe_A 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAE 36 (128)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTTCCCEEEES
T ss_pred EEEEECCCHHHHHHHHHHHHHcCCcEEEeeC
Confidence 3444444433334444455555554344433
No 228
>3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural genomics, center for structural genomics of infectious diseases; 1.90A {Francisella tularensis}
Probab=28.09 E-value=78 Score=23.81 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=25.0
Q ss_pred CCCeEEEEcC---CChhHHHHHHHHHHcCCce
Q 030411 136 PESKLLVVCQ---EGLRSAAAANKLEEAGFQN 164 (178)
Q Consensus 136 ~~~~iviyC~---~g~rs~~aa~~L~~~G~~~ 164 (178)
++++|+|+++ +|.....++..|++.|.+-
T Consensus 135 ~Gk~VLIVDDVitTG~Tl~~a~~~L~~~Ga~v 166 (232)
T 3mjd_A 135 TNKKVLLIDDVMTAGTAFYESYNKLKIINAKI 166 (232)
T ss_dssp TTCEEEEECSCCSSSHHHHHHHHHHHTTTCEE
T ss_pred CCCEEEEEEeeccccHHHHHHHHHHHHCCCEE
Confidence 6889999987 6888889999999999753
No 229
>3n0a_A Tyrosine-protein phosphatase auxilin; phosphatase-like domain, C2 domain, hydrolase; 2.20A {Bos taurus}
Probab=27.83 E-value=2.4e+02 Score=22.68 Aligned_cols=38 Identities=13% Similarity=0.376 Sum_probs=22.7
Q ss_pred CHHHHHHHhh---cCCeEEEeeCChhhhhhccCCCe-EEeccc
Q 030411 52 NAEEAKNLIA---VERYAVLDVRDNSQYNRAHIKSS-YHVPLF 90 (178)
Q Consensus 52 s~~e~~~~l~---~~~~~lIDvR~~~e~~~ghIpgA-vnip~~ 90 (178)
..+++...++ .+.+.|++++. ..|......+. +++|+.
T Consensus 48 ~i~~v~~~L~~~H~~~y~V~NLse-~~Yd~~~f~~~V~~~~~p 89 (361)
T 3n0a_A 48 QVDDIRSFLDSRHLDHYTVYNLSP-KSYRTAKFHSRVSECSWP 89 (361)
T ss_dssp -CHHHHHHHHHHHTTCEEEEECSS-SCCGGGSCGGGEEECCCC
T ss_pred CHHHHHHHHHHhCCCeEEEEECCC-CCCChhhcCCcEEEeecC
Confidence 3356666664 35899999964 56665554443 355554
No 230
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=27.66 E-value=89 Score=22.33 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=27.2
Q ss_pred cCCCCCeEEEEcCCChhH--HHHHHHHHHcCCceEEEe
Q 030411 133 QFSPESKLLVVCQEGLRS--AAAANKLEEAGFQNIACI 168 (178)
Q Consensus 133 ~~~~~~~iviyC~~g~rs--~~aa~~L~~~G~~~v~~l 168 (178)
.+.+.+.+++++++|... ...|..+++.|.+ +..+
T Consensus 74 ~i~~~D~vii~S~Sg~n~~~ie~A~~ake~G~~-vIaI 110 (170)
T 3jx9_A 74 TLHAVDRVLIFTPDTERSDLLASLARYDAWHTP-YSII 110 (170)
T ss_dssp CCCTTCEEEEEESCSCCHHHHHHHHHHHHHTCC-EEEE
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCc-EEEE
Confidence 467788999999987754 5788999999987 4433
No 231
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=27.66 E-value=95 Score=21.32 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=31.1
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEE
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIAC 167 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~ 167 (178)
.+++......+ ++..+++.+............|++.||+.+.+
T Consensus 104 ~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~ 146 (170)
T 3q87_B 104 REVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRIL 146 (170)
T ss_dssp CHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEE
Confidence 34566666666 77778888776667778888999999975443
No 232
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=27.42 E-value=1.3e+02 Score=24.61 Aligned_cols=52 Identities=10% Similarity=0.141 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHH--------cCCceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEE--------AGFQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~--------~G~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+.+..-|++|++|..+..++-.+.. .|-+.|...+++|.++.
T Consensus 101 ~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~ 160 (476)
T 3i5t_A 101 RLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGST 160 (476)
T ss_dssp HHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSS
T ss_pred HHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCC
Confidence 33443333344344468888988888776655443 34456778888887653
No 233
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=27.40 E-value=56 Score=29.97 Aligned_cols=37 Identities=8% Similarity=0.074 Sum_probs=31.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEecccc
Q 030411 135 SPESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGL 172 (178)
Q Consensus 135 ~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 172 (178)
.++++++|.|.+-..|...+..|.+.|++ ..+|.|..
T Consensus 458 ~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~-~~vLnak~ 494 (922)
T 1nkt_A 458 AKGQPVLIGTTSVERSEYLSRQFTKRRIP-HNVLNAKY 494 (922)
T ss_dssp HTTCCEEEEESCHHHHHHHHHHHHHTTCC-CEEECSSC
T ss_pred hcCCcEEEEECCHHHHHHHHHHHHHCCCC-EEEecCCh
Confidence 45789999999989999999999999996 66777764
No 234
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=26.99 E-value=67 Score=20.59 Aligned_cols=28 Identities=11% Similarity=0.046 Sum_probs=22.9
Q ss_pred CCCeEEEEcC------CChhHHHHHHHHHHcCCc
Q 030411 136 PESKLLVVCQ------EGLRSAAAANKLEEAGFQ 163 (178)
Q Consensus 136 ~~~~iviyC~------~g~rs~~aa~~L~~~G~~ 163 (178)
...+|++|.. .|..+..+-.+|.+.|++
T Consensus 16 ~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~ 49 (109)
T 3ipz_A 16 NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVP 49 (109)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCC
T ss_pred ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCC
Confidence 4567899977 488899999999999875
No 235
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=26.69 E-value=60 Score=20.68 Aligned_cols=27 Identities=26% Similarity=0.397 Sum_probs=11.6
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEE
Q 030411 140 LLVVCQEGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 140 iviyC~~g~rs~~aa~~L~~~G~~~v~ 166 (178)
|+++.+...........|...||..+.
T Consensus 8 iLivdd~~~~~~~l~~~L~~~g~~~v~ 34 (129)
T 3h1g_A 8 LLVVDDSSTMRRIIKNTLSRLGYEDVL 34 (129)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCCCEE
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCcEEE
Confidence 444444333333444445555554333
No 236
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=26.49 E-value=56 Score=25.45 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=27.2
Q ss_pred CCCCCeEEEEcC---CChhHHHHHHHHHHcCCceEE
Q 030411 134 FSPESKLLVVCQ---EGLRSAAAANKLEEAGFQNIA 166 (178)
Q Consensus 134 ~~~~~~iviyC~---~g~rs~~aa~~L~~~G~~~v~ 166 (178)
+.++++|+|+++ +|.....++..|++.|-+.|.
T Consensus 193 l~~Gk~VLIVDDViTTG~Tl~~a~~~L~~aGA~vV~ 228 (291)
T 1o57_A 193 MKTGSNVLIIDDFMKAGGTINGMINLLDEFNANVAG 228 (291)
T ss_dssp SCTTCEEEEEEEEESSSHHHHHHHHHTGGGTCEEEE
T ss_pred CCCcCEEEEEEEEcCcHHHHHHHHHHHHHCCCEEEE
Confidence 347889999987 788888999999999986544
No 237
>2wja_A Putative acid phosphatase WZB; hydrolase; 2.50A {Escherichia coli}
Probab=26.24 E-value=71 Score=22.65 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=25.3
Q ss_pred CeEEEEcCCC-hhHHHHHHHHHHcCCceEEEecccccc
Q 030411 138 SKLLVVCQEG-LRSAAAANKLEEAGFQNIACITSGLQT 174 (178)
Q Consensus 138 ~~iviyC~~g-~rs~~aa~~L~~~G~~~v~~l~GG~~~ 174 (178)
.+|+|+|.+. -||..|..+|+... .++.+...|..+
T Consensus 27 ~~VLFVCtgNicRSpmAEal~r~~~-~~~~v~SAGt~~ 63 (168)
T 2wja_A 27 DSILVICTGNICRSPIGERLLRRLL-PSKKINSAGVGA 63 (168)
T ss_dssp SEEEEEESSSSSHHHHHHHHHHHHS-TTSEEEEEETTC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHHhc-CCeEEEeeecCC
Confidence 3799999864 48888888888764 235566666643
No 238
>4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A
Probab=26.20 E-value=60 Score=23.93 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCh------hHHHHHHHHHHcCCceEEEec
Q 030411 137 ESKLLVVCQEGL------RSAAAANKLEEAGFQNIACIT 169 (178)
Q Consensus 137 ~~~iviyC~~g~------rs~~aa~~L~~~G~~~v~~l~ 169 (178)
..++||++.++. +-...++.|...||. |..++
T Consensus 55 ~~p~Vl~~HG~g~~~~~~~~~~~a~~la~~Gy~-Vl~~D 92 (259)
T 4ao6_A 55 SDRLVLLGHGGTTHKKVEYIEQVAKLLVGRGIS-AMAID 92 (259)
T ss_dssp CSEEEEEEC--------CHHHHHHHHHHHTTEE-EEEEC
T ss_pred CCCEEEEeCCCcccccchHHHHHHHHHHHCCCe-EEeec
Confidence 457888887432 123567889999995 66554
No 239
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=26.19 E-value=91 Score=22.44 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=26.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEec
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACIT 169 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~ 169 (178)
.+++|+|...+|.-...++..|.+.|++ |..+.
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~-V~~~~ 52 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGHE-PVAMV 52 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCCe-EEEEE
Confidence 4677888888888888999999999984 76553
No 240
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=25.94 E-value=68 Score=26.21 Aligned_cols=33 Identities=12% Similarity=0.071 Sum_probs=28.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEecc
Q 030411 137 ESKLLVVCQEGLRSAAAANKLEEAGFQNIACITS 170 (178)
Q Consensus 137 ~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~G 170 (178)
..+++++|++-..+...+..|...|++ +..+.|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~~~-v~~lhg 209 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAGKS-VVVLNR 209 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCC-EEECCS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCC-EEEecc
Confidence 568999999988888999999999985 777766
No 241
>3t38_A Arsenate reductase; low molecular weight tyrosine phosphatase fold, reduction of to arsenite, oxidoreductase; 2.20A {Corynebacterium glutamicum}
Probab=25.91 E-value=57 Score=24.29 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=25.8
Q ss_pred CCCeEEEEcCCC-hhHHHHHHHHHHcCCceEEEecccc
Q 030411 136 PESKLLVVCQEG-LRSAAAANKLEEAGFQNIACITSGL 172 (178)
Q Consensus 136 ~~~~iviyC~~g-~rs~~aa~~L~~~G~~~v~~l~GG~ 172 (178)
...+|+|+|.+. -||..+..+|+...-+++.+...|.
T Consensus 80 ~~~~VLFVCtgN~cRSpmAEal~~~~~~~~~~v~SAGt 117 (213)
T 3t38_A 80 PVPQVLFICVHNAGRSQIASALLSHYAGSSVEVRSAGS 117 (213)
T ss_dssp CCCEEEEEESSSSSHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCCEEEEECCCchhHHHHHHHHHHHhccCceEEEeccc
Confidence 356899999864 4888888888776444555555554
No 242
>4h3k_B RNA polymerase II subunit A C-terminal domain PHO SSU72; heat repeat, phosphatase, RNA polymerase II, hydrolase; HET: SEP; 2.00A {Homo sapiens} PDB: 3o2q_B* 4h3h_B* 3o2s_B
Probab=25.62 E-value=90 Score=23.32 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=25.1
Q ss_pred CeEEEEcCCC-hhHHHHHHHHHHcCCceEEEe
Q 030411 138 SKLLVVCQEG-LRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 138 ~~iviyC~~g-~rs~~aa~~L~~~G~~~v~~l 168 (178)
-++-++|.+. .||..+-..|.+.|| +|..+
T Consensus 26 Lr~avVCaSN~NRSMEAH~~L~k~Gf-~V~Sf 56 (214)
T 4h3k_B 26 LRVAVVSSSNQNRSMEAHNILSKRGF-SVRSF 56 (214)
T ss_dssp CEEEEEESSSSSHHHHHHHHHHHTTC-EEEEE
T ss_pred CeEEEECCCCcchhHHHHHHHHHCCC-ceEee
Confidence 4688999974 799999999999999 47655
No 243
>2fek_A Low molecular weight protein-tyrosine- phosphatase WZB; phosphate binding, hydrolase; NMR {Escherichia coli K12}
Probab=25.53 E-value=83 Score=22.28 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=25.5
Q ss_pred CeEEEEcCCC-hhHHHHHHHHHHcCCceEEEecccccc
Q 030411 138 SKLLVVCQEG-LRSAAAANKLEEAGFQNIACITSGLQT 174 (178)
Q Consensus 138 ~~iviyC~~g-~rs~~aa~~L~~~G~~~v~~l~GG~~~ 174 (178)
++|+|+|.+. -||..|..+|+... .++.+...|..+
T Consensus 23 ~~VLFVCtgN~cRSpmAEal~r~~~-~~~~v~SAGt~~ 59 (167)
T 2fek_A 23 NNILVVCVGNICRSPTAERLLQRYH-PELKVESAGLGA 59 (167)
T ss_dssp CEEEEEESSSSSHHHHHHHHHHHHC-TTCEEEEEETTC
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHhc-CCeEEEeeecCC
Confidence 4799999864 48888888888764 335566666643
No 244
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=25.47 E-value=67 Score=26.31 Aligned_cols=39 Identities=13% Similarity=0.116 Sum_probs=30.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHc-CCceEEEeccccc
Q 030411 134 FSPESKLLVVCQEGLRSAAAANKLEEA-GFQNIACITSGLQ 173 (178)
Q Consensus 134 ~~~~~~iviyC~~g~rs~~aa~~L~~~-G~~~v~~l~GG~~ 173 (178)
...+.+++|+|+.-.........|... |+. +..+.|+..
T Consensus 338 ~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~-~~~~~g~~~ 377 (500)
T 1z63_A 338 LDEGDKIAIFTQFVDMGKIIRNIIEKELNTE-VPFLYGELS 377 (500)
T ss_dssp HTTTCCEEEECSCHHHHHHHHHHHHHHHTCC-CCEEETTSC
T ss_pred HccCCcEEEEEehHHHHHHHHHHHHHhhCCC-eEEEECCCC
Confidence 456788999999877777888888875 875 777888764
No 245
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=25.38 E-value=15 Score=30.22 Aligned_cols=37 Identities=16% Similarity=0.354 Sum_probs=0.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
...+++++|++...+..++..|...|+. +..+.|++.
T Consensus 332 ~~~~~lvF~~s~~~~~~l~~~L~~~~~~-v~~lh~~~~ 368 (479)
T 3fmp_B 332 TIAQAMIFCHTRKTASWLAAELSKEGHQ-VALLSGEMM 368 (479)
T ss_dssp --------------------------------------
T ss_pred cCCceEEEeCcHHHHHHHHHHHHhCCcc-EEEecCCCC
Confidence 3467999999988888999999999885 778888764
No 246
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=25.31 E-value=72 Score=27.57 Aligned_cols=37 Identities=5% Similarity=0.046 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
.+.++||+|+.-.........|...|+. +..++|++.
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~g~~-~~~l~G~~~ 451 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNRRYL-YVRLDGTMS 451 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHTCC-EEEECSSCC
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHCCCC-EEEEeCCCC
Confidence 5778999999877777888899999996 778898864
No 247
>4egs_A Ribose 5-phosphate isomerase RPIB; tyrosine phosphatase, dephosphorylation, hydrolase; 2.30A {Thermoanaerobacter tengcongensis}
Probab=24.93 E-value=1e+02 Score=22.04 Aligned_cols=40 Identities=20% Similarity=0.322 Sum_probs=25.6
Q ss_pred CCCeEEEEcCCCh-hHHHHHHHHHH----cCCceEEEecccccccc
Q 030411 136 PESKLLVVCQEGL-RSAAAANKLEE----AGFQNIACITSGLQTVK 176 (178)
Q Consensus 136 ~~~~iviyC~~g~-rs~~aa~~L~~----~G~~~v~~l~GG~~~w~ 176 (178)
..-+|+|+|.+.. ||..|...|+. .|- ++.+..-|...|.
T Consensus 33 ~~mkVLFVC~GNiCRSpmAE~l~r~~~~~~g~-~~~v~SAGt~~~~ 77 (180)
T 4egs_A 33 GSMRVLFVCTGNTCRSPMAEGIFNAKSKALGK-DWEAKSAGVFAPE 77 (180)
T ss_dssp -CCEEEEEESSSSSHHHHHHHHHHHHHHHTTC-CCEEEEEETTCCT
T ss_pred CCeEEEEEeCCCcccCHHHHHHHHHHHHhcCC-ceEEEEeeecCcC
Confidence 3457999998643 77777666643 353 4666666776663
No 248
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=24.92 E-value=1.1e+02 Score=20.51 Aligned_cols=32 Identities=13% Similarity=0.223 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEec
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACIT 169 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~ 169 (178)
+..+|+|+ ..|.-...++..|...|+ +|.+++
T Consensus 18 ~~~~v~Ii-G~G~iG~~la~~L~~~g~-~V~vid 49 (155)
T 2g1u_A 18 KSKYIVIF-GCGRLGSLIANLASSSGH-SVVVVD 49 (155)
T ss_dssp CCCEEEEE-CCSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred CCCcEEEE-CCCHHHHHHHHHHHhCCC-eEEEEE
Confidence 34455544 568888999999999998 477664
No 249
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=24.58 E-value=1.4e+02 Score=24.10 Aligned_cols=51 Identities=6% Similarity=0.001 Sum_probs=31.6
Q ss_pred HHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc--------CCceEEEecccccccc
Q 030411 126 FVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA--------GFQNIACITSGLQTVK 176 (178)
Q Consensus 126 ~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~--------G~~~v~~l~GG~~~w~ 176 (178)
+.+.+.+..+.+..-|++|++|..+..++-.+... |-+.|...+++|.++.
T Consensus 99 la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~ 157 (459)
T 4a6r_A 99 LSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGST 157 (459)
T ss_dssp HHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSS
T ss_pred HHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCcc
Confidence 33333344444444578888888887666554432 4456888888887653
No 250
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=24.39 E-value=1.6e+02 Score=20.82 Aligned_cols=45 Identities=7% Similarity=0.048 Sum_probs=33.4
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEe
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
..++......+.++..+++.|+.......+...|...||..+...
T Consensus 136 ~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 180 (214)
T 1yzh_A 136 KTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVW 180 (214)
T ss_dssp HHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeeecc
Confidence 467887777788888888888764555677778888899755443
No 251
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=24.38 E-value=79 Score=19.12 Aligned_cols=7 Identities=57% Similarity=0.880 Sum_probs=2.6
Q ss_pred HHHHcCC
Q 030411 156 KLEEAGF 162 (178)
Q Consensus 156 ~L~~~G~ 162 (178)
.|...||
T Consensus 20 ~l~~~g~ 26 (119)
T 2j48_A 20 MLTAAGF 26 (119)
T ss_dssp HHHHTTC
T ss_pred HHHhCCc
Confidence 3333333
No 252
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=24.33 E-value=1e+02 Score=24.01 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=26.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHc-CCceEE--Eecccc
Q 030411 137 ESKLLVVCQEGLRSAAAANKLEEA-GFQNIA--CITSGL 172 (178)
Q Consensus 137 ~~~iviyC~~g~rs~~aa~~L~~~-G~~~v~--~l~GG~ 172 (178)
+.++++...+|..|..++..|.+. |++ +. .++-|+
T Consensus 20 ~~kvlvalSGGvDSsvla~ll~~~~g~~-v~av~vd~g~ 57 (308)
T 2dpl_A 20 DSKAIIALSGGVDSSTAAVLAHKAIGDR-LHAVFVNTGF 57 (308)
T ss_dssp TSCEEEECCSSHHHHHHHHHHHHHHGGG-EEEEEEECSC
T ss_pred CCCEEEEEeChHHHHHHHHHHHHhhCCC-EEEEEEcCCC
Confidence 467888888999999999998877 864 43 455454
No 253
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=24.31 E-value=2e+02 Score=23.24 Aligned_cols=24 Identities=17% Similarity=0.002 Sum_probs=15.4
Q ss_pred HHHHHHHHcCCceEEEeccccccc
Q 030411 152 AAANKLEEAGFQNIACITSGLQTV 175 (178)
Q Consensus 152 ~aa~~L~~~G~~~v~~l~GG~~~w 175 (178)
...+.+.+....=+.++.|||+-+
T Consensus 277 ~~~~~l~~~a~~vv~vleGGY~~~ 300 (375)
T 1c3p_A 277 KAFNIVREVFGEGVYLGGGGYHPY 300 (375)
T ss_dssp HHHHHHHHHHCSCEEECCCCCCHH
T ss_pred HHHHHHHHhccceEEEECCCCChH
Confidence 344556665555477889999643
No 254
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=24.30 E-value=81 Score=22.36 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=26.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEecccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQT 174 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~ 174 (178)
...+|+|+.+...........|...||..|.....|-.+
T Consensus 60 ~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~ea 98 (206)
T 3mm4_A 60 RGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEA 98 (206)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHH
Confidence 345677777765666677788888898657766655443
No 255
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=24.23 E-value=1.3e+02 Score=23.77 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc--CCceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~~w~ 176 (178)
++.+...+.++ +..-|+++++|..+...+-.+... |-+.|...+++|.++.
T Consensus 99 ~l~~~la~~~~-~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~ 151 (434)
T 3l44_A 99 KFAKMLKEAMP-ALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHS 151 (434)
T ss_dssp HHHHHHHHHCT-TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSS
T ss_pred HHHHHHHHhCC-CCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCc
Confidence 34444334444 445677888888888776655443 6567888888887653
No 256
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=23.62 E-value=1.5e+02 Score=23.85 Aligned_cols=52 Identities=8% Similarity=0.079 Sum_probs=33.5
Q ss_pred HHHHHHHhcCCCC-CeEEEEcCCChhHHHHHHHHHH--cCCceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPE-SKLLVVCQEGLRSAAAANKLEE--AGFQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~-~~iviyC~~g~rs~~aa~~L~~--~G~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+.+ ..-|++|++|..+..++-.+.. .|-+.|...+++|.++.
T Consensus 108 ~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~ 162 (451)
T 3oks_A 108 AVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRT 162 (451)
T ss_dssp HHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSS
T ss_pred HHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCcc
Confidence 3334433434422 3467888888888877765544 37667888889888664
No 257
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=23.51 E-value=87 Score=24.62 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=22.2
Q ss_pred EEEEcCCChhHHHHHHHHHHcCCceEEEecccccccc
Q 030411 140 LLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQTVK 176 (178)
Q Consensus 140 iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~w~ 176 (178)
.|++|.. |...+...+...|++ +.++|+|+|-++
T Consensus 112 ~v~v~~~--R~~~~~~~~~~~~~d-viIlDDGfQh~~ 145 (315)
T 4ehx_A 112 SVVASED--RYKGGLLALEKLSPE-VFILDDGFQHRK 145 (315)
T ss_dssp EEEEESS--HHHHHHHHHHHHCCS-EEEEETCTTCTT
T ss_pred eEEEecc--hHHHHHHHhhccCCc-EEEecCcccccc
Confidence 3455543 444444555667875 999999999764
No 258
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=23.51 E-value=1.4e+02 Score=23.16 Aligned_cols=39 Identities=23% Similarity=0.375 Sum_probs=29.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHHc----CCceE--EEecccc
Q 030411 134 FSPESKLLVVCQEGLRSAAAANKLEEA----GFQNI--ACITSGL 172 (178)
Q Consensus 134 ~~~~~~iviyC~~g~rs~~aa~~L~~~----G~~~v--~~l~GG~ 172 (178)
+.++.+|++-+.+|..|..++..|.+. |++++ .+++-|+
T Consensus 21 ~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~ 65 (317)
T 1wy5_A 21 FSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHML 65 (317)
T ss_dssp CSSCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCS
T ss_pred CCCCCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCC
Confidence 567788999999999999999888875 66523 3555554
No 259
>3k5w_A Carbohydrate kinase; 11206B,helicobacter pylori,PSI-II, NYSGXRC, , structural genomics, protein structure initiative; 2.60A {Helicobacter pylori}
Probab=23.48 E-value=1.1e+02 Score=25.72 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=25.5
Q ss_pred HHhcCCCCCeEEEEcCCCh---hHHHHHHHHHHcCCceEEE
Q 030411 130 VKSQFSPESKLLVVCQEGL---RSAAAANKLEEAGFQNIAC 167 (178)
Q Consensus 130 ~~~~~~~~~~iviyC~~g~---rs~~aa~~L~~~G~~~v~~ 167 (178)
..+.+++.++|+|+|..|+ ....+|++|... |+ |.+
T Consensus 39 i~~~~~~~~~v~VlcG~GNNGGDGlv~AR~L~~~-~~-V~v 77 (475)
T 3k5w_A 39 VLQNASLGAKVIILCGSGDNGGDGYALARRLVGR-FR-VLV 77 (475)
T ss_dssp HHTTSCTTCEEEEEECSSHHHHHHHHHHHHHBTT-BE-EEE
T ss_pred HHHHcCCCCeEEEEECCCCCHHHHHHHHHHHHcC-Cc-eEE
Confidence 3444566789999999765 567888888866 64 553
No 260
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=23.45 E-value=85 Score=25.76 Aligned_cols=33 Identities=15% Similarity=0.078 Sum_probs=27.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEecc
Q 030411 137 ESKLLVVCQEGLRSAAAANKLEEAGFQNIACITS 170 (178)
Q Consensus 137 ~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~G 170 (178)
..+++|+|++-..+..++..|...|+. +..|.|
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~-v~~lh~ 222 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKK-VIQLNR 222 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCC-EEEEST
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCc-EEecCH
Confidence 567999999988888999999999985 666665
No 261
>2zfz_A Arginine repressor; DNA binding protein, core, oligomeriza domain, alpha/beta topology, structural genomics; HET: ARG; 1.85A {Mycobacterium tuberculosis} PDB: 3bue_A 3cag_A*
Probab=23.44 E-value=70 Score=19.63 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=21.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHH
Q 030411 134 FSPESKLLVVCQEGLRSAAAANKLEE 159 (178)
Q Consensus 134 ~~~~~~iviyC~~g~rs~~aa~~L~~ 159 (178)
+..|.+|++.|.+...+......|.+
T Consensus 52 IAGDDTIlvi~r~~~~a~~l~~~l~~ 77 (79)
T 2zfz_A 52 IAGDDTILVVAREPTTGAQLAGMFEN 77 (79)
T ss_dssp EECSSEEEEEECTTCCHHHHHHHHHH
T ss_pred EecCCEEEEEECCHHHHHHHHHHHHh
Confidence 34678999999998888888887765
No 262
>1xxa_A ARGR, arginine repressor; complex (DNA binding protein/peptide); HET: ARG; 2.20A {Escherichia coli K12} SCOP: d.74.2.1 PDB: 1xxb_A* 1xxc_A
Probab=23.19 E-value=72 Score=19.60 Aligned_cols=26 Identities=8% Similarity=0.148 Sum_probs=21.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHHc
Q 030411 135 SPESKLLVVCQEGLRSAAAANKLEEA 160 (178)
Q Consensus 135 ~~~~~iviyC~~g~rs~~aa~~L~~~ 160 (178)
..|.+|++.|.++..+......+++.
T Consensus 48 AGDDTIlvi~r~~~~a~~l~~~i~~l 73 (78)
T 1xxa_A 48 AGDDTIFTTPANGFTVKDLYEAILEL 73 (78)
T ss_dssp ECSSEEEEEECTTCCHHHHHHHHHTT
T ss_pred ecCCEEEEEECCHHHHHHHHHHHHHH
Confidence 35789999999999988888888764
No 263
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=23.17 E-value=59 Score=22.98 Aligned_cols=44 Identities=14% Similarity=0.281 Sum_probs=30.3
Q ss_pred HHhcCCCCCeEEEEcCCCh--hHHHHHHHHHHc---CCceEEEeccccccc
Q 030411 130 VKSQFSPESKLLVVCQEGL--RSAAAANKLEEA---GFQNIACITSGLQTV 175 (178)
Q Consensus 130 ~~~~~~~~~~iviyC~~g~--rs~~aa~~L~~~---G~~~v~~l~GG~~~w 175 (178)
....++++ .+|+.|..|. .|...|..|.+. | .++..+-||-.++
T Consensus 60 il~~i~~~-~vi~Ld~~Gk~~sS~~fA~~l~~~~~~g-~~i~FvIGG~~Gl 108 (155)
T 1ns5_A 60 MLAAAGKN-RIVTLDIPGKPWDTPQLAAELERWKLDG-RDVSLLIGGPEGL 108 (155)
T ss_dssp HHHHHTTS-EEEEEEEEEECCCHHHHHHHHHHHHHHC-SCEEEEECBTTBC
T ss_pred HHHhcCCC-cEEEEcCCCCcCCHHHHHHHHHHHHhcC-CeEEEEEECCCCC
Confidence 34445555 5777777654 577888777654 7 6788888887654
No 264
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=22.85 E-value=1.3e+02 Score=27.02 Aligned_cols=51 Identities=6% Similarity=0.081 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCCC-CeEEEEcCCChhHHHHHHHHH-H-----cC-----------CceEEEeccccccc
Q 030411 125 EFVQSVKSQFSPE-SKLLVVCQEGLRSAAAANKLE-E-----AG-----------FQNIACITSGLQTV 175 (178)
Q Consensus 125 ~~~~~~~~~~~~~-~~iviyC~~g~rs~~aa~~L~-~-----~G-----------~~~v~~l~GG~~~w 175 (178)
++.+.+.+..+.+ ..-|+||++|..+..+|-.|. + .| -.+|..++++|.+.
T Consensus 428 ~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~ 496 (831)
T 4a0g_A 428 KCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGD 496 (831)
T ss_dssp HHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCS
T ss_pred HHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccC
Confidence 3444444444444 457899999998887777665 2 12 33577888988764
No 265
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=22.77 E-value=35 Score=25.76 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=33.7
Q ss_pred hHHHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHcCCceEEEec
Q 030411 124 PEFVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEAGFQNIACIT 169 (178)
Q Consensus 124 ~~~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~ 169 (178)
.++++.....+.++..++++|............|.+.||..+..++
T Consensus 191 ~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 191 WNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLETVE 236 (275)
T ss_dssp GGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEEEE
T ss_pred HHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEEEE
Confidence 4677777777778888888887654556777788889997666554
No 266
>1b4b_A Arginine repressor; core, oligomerization domain, helix TUR; HET: ARG; 2.20A {Geobacillus stearothermophilus} SCOP: d.74.2.1
Probab=22.74 E-value=65 Score=19.36 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=20.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHH
Q 030411 135 SPESKLLVVCQEGLRSAAAANKLEE 159 (178)
Q Consensus 135 ~~~~~iviyC~~g~rs~~aa~~L~~ 159 (178)
..|.+|++.|.++..+....+.+.+
T Consensus 45 AGDDTIlvi~r~~~~a~~l~~~i~~ 69 (71)
T 1b4b_A 45 CGDDTCLIICRTPKDAKKVSNQLLS 69 (71)
T ss_dssp ECSSEEEEEESSHHHHHHHHHHHHT
T ss_pred eeCCEEEEEECCHHHHHHHHHHHHH
Confidence 4678999999998888888877764
No 267
>4dfc_B Uvrabc system protein A; alpha/beta domains, DNA repair, ATP binding, DNA binding, NU excision repair, hydrolase-DNA binding protein complex; 2.80A {Escherichia coli}
Probab=22.67 E-value=1e+02 Score=20.80 Aligned_cols=34 Identities=12% Similarity=0.275 Sum_probs=24.9
Q ss_pred cCCCCCeEEEEcC-----CChhHHHHHHHHHHcCCceEEE
Q 030411 133 QFSPESKLLVVCQ-----EGLRSAAAANKLEEAGFQNIAC 167 (178)
Q Consensus 133 ~~~~~~~iviyC~-----~g~rs~~aa~~L~~~G~~~v~~ 167 (178)
.++.++++.|+.+ .|. -......|++.||.++.+
T Consensus 17 ~~~egtki~iLAPvv~~rKg~-~~~ll~~l~~~Gf~Rvrv 55 (126)
T 4dfc_B 17 SQPEGKRLMLLAPIIKERKGE-HTKTLENLASQGYIRARI 55 (126)
T ss_dssp SSCTTCCEEEEEEEEEEEESC-CHHHHHHHHHHTCCEEEE
T ss_pred hCCCCCEEEEEeEEEeCCCCc-HHHHHHHHHhCCCeEEEE
Confidence 4577889988876 232 357788899999987654
No 268
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=22.66 E-value=1.6e+02 Score=23.72 Aligned_cols=52 Identities=10% Similarity=0.160 Sum_probs=33.5
Q ss_pred HHHHHHHhcCCCC-CeEEEEcCCChhHHHHHHHHHH--cCCceEEEecccccccc
Q 030411 125 EFVQSVKSQFSPE-SKLLVVCQEGLRSAAAANKLEE--AGFQNIACITSGLQTVK 176 (178)
Q Consensus 125 ~~~~~~~~~~~~~-~~iviyC~~g~rs~~aa~~L~~--~G~~~v~~l~GG~~~w~ 176 (178)
++.+.+.+..+.+ ..-|++|++|..+..++-.+.. .|-+.|...+++|.++.
T Consensus 111 ~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~ 165 (453)
T 4ffc_A 111 QVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRT 165 (453)
T ss_dssp HHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSS
T ss_pred HHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcc
Confidence 3334444444432 3567788888888877765544 36567888888888653
No 269
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=22.56 E-value=67 Score=25.52 Aligned_cols=33 Identities=12% Similarity=0.184 Sum_probs=26.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEE-Eecc
Q 030411 137 ESKLLVVCQEGLRSAAAANKLEEAGFQNIA-CITS 170 (178)
Q Consensus 137 ~~~iviyC~~g~rs~~aa~~L~~~G~~~v~-~l~G 170 (178)
+.+++|||++-..+..++..|...|+. +. .+.|
T Consensus 252 ~~~~lVF~~~~~~~~~l~~~L~~~~~~-~~~~~h~ 285 (414)
T 3oiy_A 252 RDGILIFAQTEEEGKELYEYLKRFKFN-VGETWSE 285 (414)
T ss_dssp CSSEEEEESSHHHHHHHHHHHHHTTCC-EEESSSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCc-eehhhcC
Confidence 478999999988888999999999986 54 5544
No 270
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=22.47 E-value=90 Score=19.94 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
+..+|+++++...........|...||. +.....+-.
T Consensus 14 ~~~~ilivdd~~~~~~~l~~~L~~~g~~-v~~~~~~~~ 50 (138)
T 2b4a_A 14 QPFRVTLVEDEPSHATLIQYHLNQLGAE-VTVHPSGSA 50 (138)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCE-EEEESSHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCCE-EEEeCCHHH
Confidence 4556777666655666777788888884 666555443
No 271
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=22.45 E-value=94 Score=28.40 Aligned_cols=38 Identities=24% Similarity=0.467 Sum_probs=31.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHH-cCCceEEEeccccc
Q 030411 135 SPESKLLVVCQEGLRSAAAANKLEE-AGFQNIACITSGLQ 173 (178)
Q Consensus 135 ~~~~~iviyC~~g~rs~~aa~~L~~-~G~~~v~~l~GG~~ 173 (178)
.++.++||+|++...+...+..|.. .|+. +..+.|++.
T Consensus 501 ~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~-~~~lhG~~~ 539 (968)
T 3dmq_A 501 HRSQKVLVICAKAATALQLEQVLREREGIR-AAVFHEGMS 539 (968)
T ss_dssp TSSSCCCEECSSTHHHHHHHHHHHTTTCCC-EEEECTTSC
T ss_pred CCCCCEEEEeCcHHHHHHHHHHHHHHcCCc-EEEEeCCCC
Confidence 4577899999998888899999984 6985 888899875
No 272
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=22.24 E-value=91 Score=25.31 Aligned_cols=34 Identities=12% Similarity=0.177 Sum_probs=28.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccc
Q 030411 137 ESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSG 171 (178)
Q Consensus 137 ~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG 171 (178)
..+++++|++-..+...+..|...|+. +..+.|+
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~-v~~lhg~ 204 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKK-VLYLNRK 204 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCC-EEEESTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCe-EEEeCCc
Confidence 457999999988888999999999875 7777775
No 273
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=21.92 E-value=93 Score=19.56 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=17.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEec
Q 030411 137 ESKLLVVCQEGLRSAAAANKLEEAGFQNIACIT 169 (178)
Q Consensus 137 ~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~ 169 (178)
..+|+++++...........|...||. +....
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~-v~~~~ 38 (130)
T 3eod_A 7 GKQILIVEDEQVFRSLLDSWFSSLGAT-TVLAA 38 (130)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCE-EEEES
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCce-EEEeC
Confidence 345666655544445555666666664 44333
No 274
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=21.80 E-value=83 Score=25.70 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=28.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEecccc
Q 030411 137 ESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGL 172 (178)
Q Consensus 137 ~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 172 (178)
..+++|+|++-..+..++..|.+.|+. +..+.|..
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~~-~~~lh~~~ 222 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKR-VIQLSRKT 222 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCC-EEEECTTT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCCe-EEECCHHH
Confidence 457999999988888999999999985 77776654
No 275
>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1 phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A {Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A* 1xtu_A* 1xtv_A* 3g6w_A*
Probab=21.64 E-value=1.1e+02 Score=22.82 Aligned_cols=29 Identities=3% Similarity=0.064 Sum_probs=23.4
Q ss_pred eEEEEcC---CChhHHHHHHHHHHcCC-ceEEEe
Q 030411 139 KLLVVCQ---EGLRSAAAANKLEEAGF-QNIACI 168 (178)
Q Consensus 139 ~iviyC~---~g~rs~~aa~~L~~~G~-~~v~~l 168 (178)
.||++++ +|.....+...|++ |. ++|.++
T Consensus 135 ~VilvDp~laTG~T~~~ai~~L~~-G~p~~I~~~ 167 (216)
T 1xtt_A 135 NVIIADPMIATASTMLKVLEEVVK-ANPKRIYIV 167 (216)
T ss_dssp EEEEECSEESSSHHHHHHHHHHGG-GCCSEEEEE
T ss_pred eEEEEcCCccchHHHHHHHHHHHh-CCCCeEEEE
Confidence 7888876 78888899999999 98 776644
No 276
>4hjh_A Phosphomannomutase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SEP G6Q; 2.10A {Brucella melitensis BV}
Probab=21.63 E-value=1.2e+02 Score=25.13 Aligned_cols=42 Identities=7% Similarity=0.070 Sum_probs=31.9
Q ss_pred HHHHHHhcCC----CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEe
Q 030411 126 FVQSVKSQFS----PESKLLVVCQEGLRSAAAANKLEEAGFQNIACI 168 (178)
Q Consensus 126 ~~~~~~~~~~----~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l 168 (178)
+++...+.++ ++-+|+++|.+|.-...+...|+++|++ +..+
T Consensus 163 Yi~~~~~~~~~~~~~~lkivvd~~~Ga~~~~~~~~l~~lG~~-v~~l 208 (481)
T 4hjh_A 163 YADRYAGFLGKGSLNGLRVGVYQHSSVARDLLMYLLTTLGVE-PVAL 208 (481)
T ss_dssp HHHHHHHHHCTTTTTTCEEEEEEETCTTHHHHHHHHHHTTCE-EEEE
T ss_pred HHHHHHHhcCcccccCCEEEEECCCChHHHHHHHHHHHcCCe-EEEe
Confidence 6666555443 3568999999888888999999999995 5544
No 277
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=21.50 E-value=1e+02 Score=21.35 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=21.1
Q ss_pred eEEEEcCCChhHHHHHHHHHHc-CCceEEEec
Q 030411 139 KLLVVCQEGLRSAAAANKLEEA-GFQNIACIT 169 (178)
Q Consensus 139 ~iviyC~~g~rs~~aa~~L~~~-G~~~v~~l~ 169 (178)
+|+ +|..|.....++..|.+. |++ |..++
T Consensus 41 ~v~-IiG~G~~G~~~a~~L~~~~g~~-V~vid 70 (183)
T 3c85_A 41 QVL-ILGMGRIGTGAYDELRARYGKI-SLGIE 70 (183)
T ss_dssp SEE-EECCSHHHHHHHHHHHHHHCSC-EEEEE
T ss_pred cEE-EECCCHHHHHHHHHHHhccCCe-EEEEE
Confidence 444 446688888899999998 985 66554
No 278
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=21.34 E-value=36 Score=28.40 Aligned_cols=37 Identities=19% Similarity=0.501 Sum_probs=27.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
...+++|+|++-..+..++..|...|+. +..+.|++.
T Consensus 356 ~~~~~LVF~~s~~~a~~l~~~L~~~~~~-v~~~hg~~~ 392 (508)
T 3fho_A 356 TIGQSIIFCKKKDTAEEIARRMTADGHT-VACLTGNLE 392 (508)
T ss_dssp -CCCEEEBCSSTTTTTHHHHHHTTTTCC-CCEEC----
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhCCCc-EEEEeCCCC
Confidence 4568999999988888999999999885 778888764
No 279
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=21.00 E-value=20 Score=28.06 Aligned_cols=36 Identities=19% Similarity=0.394 Sum_probs=0.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHHcCCceEEEeccccc
Q 030411 137 ESKLLVVCQEGLRSAAAANKLEEAGFQNIACITSGLQ 173 (178)
Q Consensus 137 ~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 173 (178)
..+++|+|++-..+...+..|...|+. +..+.|++.
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~ 294 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRNDKFT-VSAIYSDLP 294 (394)
T ss_dssp -------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcCCe-EEEeeCCCC
Confidence 467999999888888899999998885 777777754
No 280
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=20.45 E-value=1.3e+02 Score=24.68 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=25.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHHcCCceEEEec
Q 030411 136 PESKLLVVCQEGLRSAAAANKLEEAGFQNIACIT 169 (178)
Q Consensus 136 ~~~~iviyC~~g~rs~~aa~~L~~~G~~~v~~l~ 169 (178)
.+.+|+++ ..|....-+++.|...|.++|++++
T Consensus 191 ~~~kVVv~-GAGaAG~~iAkll~~~G~~~I~v~D 223 (388)
T 1vl6_A 191 EEVKVVVN-GIGAAGYNIVKFLLDLGVKNVVAVD 223 (388)
T ss_dssp TTCEEEEE-CCSHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CCcEEEEE-CCCHHHHHHHHHHHhCCCCeEEEEE
Confidence 35566666 4567888899999999998999876
No 281
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=20.41 E-value=1e+02 Score=19.35 Aligned_cols=11 Identities=18% Similarity=0.492 Sum_probs=4.6
Q ss_pred HHHHHHHHcCC
Q 030411 152 AAANKLEEAGF 162 (178)
Q Consensus 152 ~aa~~L~~~G~ 162 (178)
.....|...||
T Consensus 17 ~l~~~l~~~g~ 27 (122)
T 3gl9_A 17 IVSFNLKKEGY 27 (122)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCc
Confidence 33334444444
No 282
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=20.33 E-value=1.4e+02 Score=28.02 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=36.1
Q ss_pred HHHHHHhcCCCCCeEEEEcCCChhHHHHHHHHHHc--CCceEEEeccccc
Q 030411 126 FVQSVKSQFSPESKLLVVCQEGLRSAAAANKLEEA--GFQNIACITSGLQ 173 (178)
Q Consensus 126 ~~~~~~~~~~~~~~iviyC~~g~rs~~aa~~L~~~--G~~~v~~l~GG~~ 173 (178)
..+.....+..+.+++++|++-..+...+..|.+. |+. +..+.|++.
T Consensus 801 i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~-v~~lhg~~~ 849 (1151)
T 2eyq_A 801 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEAR-IAIGHGQMR 849 (1151)
T ss_dssp HHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSC-EEECCSSCC
T ss_pred HHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCe-EEEEeCCCC
Confidence 34445555667788999999888888899999887 664 888888864
Done!