Query 030412
Match_columns 177
No_of_seqs 226 out of 1877
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 13:20:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030412.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030412hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0648 Predicted NUDIX hydrol 100.0 1.9E-34 4.1E-39 237.6 11.8 165 13-177 19-184 (295)
2 cd03430 GDPMH GDP-mannose glyc 99.7 1.3E-16 2.8E-21 120.6 9.0 67 106-174 10-78 (144)
3 cd04679 Nudix_Hydrolase_20 Mem 99.7 1.9E-16 4.1E-21 116.0 9.5 66 108-175 2-67 (125)
4 cd04670 Nudix_Hydrolase_12 Mem 99.7 2.5E-16 5.4E-21 115.7 8.7 67 107-176 1-67 (127)
5 COG1051 ADP-ribose pyrophospha 99.7 3E-16 6.5E-21 119.0 8.6 70 104-176 6-75 (145)
6 PLN02325 nudix hydrolase 99.7 9.2E-16 2E-20 116.0 10.3 70 103-175 4-73 (144)
7 cd04700 DR1025_like DR1025 fro 99.6 9.6E-16 2.1E-20 115.4 8.9 67 106-174 11-77 (142)
8 PRK15434 GDP-mannose mannosyl 99.6 1.1E-15 2.4E-20 117.7 9.3 60 107-168 16-75 (159)
9 PRK09438 nudB dihydroneopterin 99.6 1.3E-15 2.8E-20 115.0 7.8 57 107-167 6-62 (148)
10 cd04678 Nudix_Hydrolase_19 Mem 99.6 2.3E-15 5E-20 110.7 8.8 65 108-174 2-66 (129)
11 cd03671 Ap4A_hydrolase_plant_l 99.6 1.9E-15 4.2E-20 114.1 8.2 63 108-174 3-65 (147)
12 cd04671 Nudix_Hydrolase_13 Mem 99.6 3.5E-15 7.6E-20 109.9 9.3 64 110-175 2-65 (123)
13 cd04684 Nudix_Hydrolase_25 Con 99.6 1.8E-15 4E-20 110.3 7.8 62 110-174 2-63 (128)
14 cd04691 Nudix_Hydrolase_32 Mem 99.6 3.5E-15 7.7E-20 108.6 9.0 61 111-172 3-63 (117)
15 cd04696 Nudix_Hydrolase_37 Mem 99.6 2.5E-15 5.4E-20 110.2 8.1 63 108-174 2-64 (125)
16 cd04681 Nudix_Hydrolase_22 Mem 99.6 3.3E-15 7.1E-20 109.9 8.5 63 110-174 3-65 (130)
17 cd04669 Nudix_Hydrolase_11 Mem 99.6 3.1E-15 6.7E-20 109.5 8.3 62 111-175 3-64 (121)
18 cd04511 Nudix_Hydrolase_4 Memb 99.6 5E-15 1.1E-19 109.5 9.4 73 100-175 5-77 (130)
19 PF00293 NUDIX: NUDIX domain; 99.6 4.6E-15 1E-19 108.4 8.9 67 108-174 2-68 (134)
20 PRK15472 nucleoside triphospha 99.6 3E-15 6.5E-20 112.1 8.0 59 110-168 5-63 (141)
21 cd03424 ADPRase_NUDT5 ADP-ribo 99.6 5.1E-15 1.1E-19 109.9 8.5 65 108-173 2-66 (137)
22 cd04677 Nudix_Hydrolase_18 Mem 99.6 6.5E-15 1.4E-19 108.3 8.1 63 107-174 6-68 (132)
23 cd04682 Nudix_Hydrolase_23 Mem 99.6 5.4E-15 1.2E-19 108.0 7.5 59 111-169 3-62 (122)
24 cd04673 Nudix_Hydrolase_15 Mem 99.6 7.3E-15 1.6E-19 106.4 7.7 63 109-174 1-63 (122)
25 cd04699 Nudix_Hydrolase_39 Mem 99.6 7.9E-15 1.7E-19 107.1 7.4 64 109-172 2-65 (129)
26 cd04683 Nudix_Hydrolase_24 Mem 99.6 1.3E-14 2.8E-19 105.3 8.2 57 110-168 2-58 (120)
27 cd04680 Nudix_Hydrolase_21 Mem 99.6 9.6E-15 2.1E-19 105.6 7.4 61 110-175 2-63 (120)
28 cd04697 Nudix_Hydrolase_38 Mem 99.6 1.1E-14 2.3E-19 107.3 7.5 64 110-173 2-66 (126)
29 cd03674 Nudix_Hydrolase_1 Memb 99.6 1.3E-14 2.8E-19 108.5 7.8 58 110-172 4-62 (138)
30 cd04672 Nudix_Hydrolase_14 Mem 99.5 2E-14 4.3E-19 105.2 8.3 62 108-175 2-63 (123)
31 cd04687 Nudix_Hydrolase_28 Mem 99.5 2.6E-14 5.7E-19 105.1 8.6 62 109-174 2-63 (128)
32 cd04690 Nudix_Hydrolase_31 Mem 99.5 2.3E-14 5E-19 103.5 8.2 59 111-174 3-63 (118)
33 PRK00241 nudC NADH pyrophospha 99.5 4.8E-14 1.1E-18 116.2 10.8 107 43-174 88-194 (256)
34 cd03427 MTH1 MutT homolog-1 (M 99.5 2.4E-14 5.3E-19 106.1 8.1 61 112-175 5-65 (137)
35 cd04676 Nudix_Hydrolase_17 Mem 99.5 2.9E-14 6.4E-19 103.6 8.3 60 109-173 3-62 (129)
36 cd03673 Ap6A_hydrolase Diadeno 99.5 1.1E-14 2.5E-19 106.5 6.1 61 109-174 2-65 (131)
37 cd04693 Nudix_Hydrolase_34 Mem 99.5 2E-14 4.3E-19 105.6 7.2 59 110-169 2-61 (127)
38 PRK00714 RNA pyrophosphohydrol 99.5 4E-14 8.6E-19 108.4 9.0 64 107-174 7-70 (156)
39 cd03429 NADH_pyrophosphatase N 99.5 1.9E-14 4.2E-19 106.8 6.6 62 110-174 2-63 (131)
40 cd03426 CoAse Coenzyme A pyrop 99.5 3.6E-14 7.7E-19 108.6 8.2 66 110-175 4-72 (157)
41 cd03675 Nudix_Hydrolase_2 Cont 99.5 3.7E-14 8E-19 104.9 7.9 61 110-174 2-62 (134)
42 cd03672 Dcp2p mRNA decapping e 99.5 2.4E-14 5.1E-19 108.5 6.9 55 110-169 3-58 (145)
43 cd04664 Nudix_Hydrolase_7 Memb 99.5 3.9E-14 8.5E-19 104.2 7.7 62 110-174 3-66 (129)
44 PRK10776 nucleoside triphospha 99.5 8E-14 1.7E-18 101.6 9.2 62 110-172 6-67 (129)
45 cd04689 Nudix_Hydrolase_30 Mem 99.5 5.6E-14 1.2E-18 102.8 8.0 60 109-174 2-61 (125)
46 PRK10546 pyrimidine (deoxy)nuc 99.5 8.1E-14 1.8E-18 103.1 8.5 62 111-173 6-67 (135)
47 PRK11762 nudE adenosine nucleo 99.5 9.6E-14 2.1E-18 109.0 9.4 64 110-174 49-112 (185)
48 cd04694 Nudix_Hydrolase_35 Mem 99.5 1.2E-13 2.5E-18 104.6 9.0 61 109-169 2-62 (143)
49 cd04686 Nudix_Hydrolase_27 Mem 99.5 1E-13 2.2E-18 102.9 8.0 58 110-173 2-60 (131)
50 cd04688 Nudix_Hydrolase_29 Mem 99.5 1.1E-13 2.4E-18 101.4 8.0 59 110-174 3-61 (126)
51 cd04692 Nudix_Hydrolase_33 Mem 99.5 1.1E-13 2.4E-18 104.1 7.3 59 110-168 4-66 (144)
52 TIGR00586 mutt mutator mutT pr 99.5 3E-13 6.6E-18 98.8 9.3 62 110-172 6-67 (128)
53 PRK15393 NUDIX hydrolase YfcD; 99.5 1.5E-13 3.3E-18 107.6 8.0 62 109-170 38-100 (180)
54 cd02885 IPP_Isomerase Isopente 99.5 1E-13 2.2E-18 106.8 6.6 65 108-172 30-95 (165)
55 cd04667 Nudix_Hydrolase_10 Mem 99.5 1.8E-13 4E-18 98.5 7.2 54 114-173 5-58 (112)
56 cd04666 Nudix_Hydrolase_9 Memb 99.5 2.1E-13 4.6E-18 100.4 7.6 59 111-174 3-65 (122)
57 PRK05379 bifunctional nicotina 99.5 1.9E-13 4E-18 116.9 8.3 61 107-170 202-262 (340)
58 PLN03143 nudix hydrolase; Prov 99.4 1.5E-12 3.2E-17 108.9 12.9 161 4-168 22-191 (291)
59 cd04685 Nudix_Hydrolase_26 Mem 99.4 8.2E-13 1.8E-17 98.7 9.0 58 110-167 2-59 (133)
60 cd03428 Ap4A_hydrolase_human_l 99.4 1.8E-13 3.8E-18 100.5 5.1 57 110-172 4-63 (130)
61 cd03425 MutT_pyrophosphohydrol 99.4 7.3E-13 1.6E-17 95.3 7.9 62 111-173 4-65 (124)
62 cd04695 Nudix_Hydrolase_36 Mem 99.4 5E-13 1.1E-17 98.9 6.9 50 117-169 11-60 (131)
63 TIGR00052 nudix-type nucleosid 99.4 4.2E-13 9.1E-18 105.7 6.6 67 107-173 43-114 (185)
64 PRK03759 isopentenyl-diphospha 99.4 6.9E-13 1.5E-17 104.1 7.4 62 108-169 34-96 (184)
65 KOG3084 NADH pyrophosphatase I 99.4 1.5E-12 3.2E-17 108.5 8.4 110 44-173 140-250 (345)
66 PRK10707 putative NUDIX hydrol 99.4 1.8E-12 3.8E-17 102.6 8.6 65 110-174 32-99 (190)
67 cd02883 Nudix_Hydrolase Nudix 99.4 2E-12 4.2E-17 92.2 8.0 58 110-170 2-59 (123)
68 cd04665 Nudix_Hydrolase_8 Memb 99.4 2.9E-12 6.3E-17 94.0 8.5 58 111-175 3-60 (118)
69 cd04674 Nudix_Hydrolase_16 Mem 99.4 4.1E-12 8.9E-17 93.3 9.1 55 111-168 7-61 (118)
70 cd04661 MRP_L46 Mitochondrial 99.4 1E-12 2.2E-17 97.7 5.7 47 119-168 12-58 (132)
71 TIGR02705 nudix_YtkD nucleosid 99.4 3.7E-12 8E-17 97.8 8.4 59 109-174 25-83 (156)
72 TIGR02150 IPP_isom_1 isopenten 99.3 3.4E-12 7.3E-17 97.9 7.3 60 109-170 28-88 (158)
73 COG2816 NPY1 NTP pyrophosphohy 99.3 7.1E-12 1.5E-16 103.5 9.7 116 34-174 90-206 (279)
74 PRK10729 nudF ADP-ribose pyrop 99.3 5.6E-12 1.2E-16 100.6 8.6 66 108-173 49-119 (202)
75 cd04662 Nudix_Hydrolase_5 Memb 99.3 7.2E-12 1.6E-16 92.9 8.4 58 111-168 3-65 (126)
76 cd03676 Nudix_hydrolase_3 Memb 99.3 1.8E-11 3.9E-16 95.5 8.8 62 108-169 34-98 (180)
77 PRK15009 GDP-mannose pyrophosp 99.2 5.2E-11 1.1E-15 94.3 8.3 66 107-173 44-115 (191)
78 PRK08999 hypothetical protein; 99.2 5.3E-11 1.1E-15 100.1 8.8 61 110-171 7-67 (312)
79 PLN02709 nudix hydrolase 99.2 9E-11 2E-15 94.7 7.7 55 120-174 51-106 (222)
80 cd04663 Nudix_Hydrolase_6 Memb 99.2 8E-11 1.7E-15 87.4 6.4 51 111-167 3-55 (126)
81 COG0494 MutT NTP pyrophosphohy 99.2 1.4E-10 3E-15 84.3 7.5 45 120-168 24-69 (161)
82 cd03670 ADPRase_NUDT9 ADP-ribo 99.1 2.1E-10 4.5E-15 90.5 5.3 42 120-166 49-90 (186)
83 KOG2839 Diadenosine and diphos 99.0 1E-09 2.3E-14 82.2 6.1 61 107-171 8-71 (145)
84 KOG3041 Nucleoside diphosphate 98.9 5.4E-09 1.2E-13 82.1 6.8 47 119-166 87-133 (225)
85 PLN02552 isopentenyl-diphospha 98.8 9.8E-09 2.1E-13 84.3 7.8 60 109-168 57-134 (247)
86 PLN02791 Nudix hydrolase homol 98.8 1.3E-08 2.8E-13 94.8 7.6 60 109-168 33-94 (770)
87 cd03431 DNA_Glycosylase_C DNA 98.5 3.7E-07 8E-12 65.1 7.6 50 114-164 8-57 (118)
88 KOG3069 Peroxisomal NUDIX hydr 98.4 4E-07 8.7E-12 73.5 5.4 55 120-174 58-113 (246)
89 COG4119 Predicted NTP pyrophos 98.1 6.6E-06 1.4E-10 60.7 5.5 58 110-168 5-68 (161)
90 KOG4195 Transient receptor pot 98.0 5.4E-06 1.2E-10 66.5 3.5 38 121-163 140-177 (275)
91 PF14815 NUDIX_4: NUDIX domain 97.7 4.8E-05 1E-09 54.7 3.5 54 113-168 2-55 (114)
92 PLN02839 nudix hydrolase 97.6 0.0013 2.8E-08 56.8 12.5 119 34-168 147-267 (372)
93 COG1443 Idi Isopentenyldiphosp 97.5 0.00013 2.8E-09 56.6 4.0 62 109-170 34-96 (185)
94 PF13869 NUDIX_2: Nucleotide h 96.1 0.034 7.5E-07 43.9 7.6 41 120-166 58-98 (188)
95 KOG2937 Decapping enzyme compl 96.0 0.00071 1.5E-08 57.3 -2.2 54 110-168 84-138 (348)
96 KOG1689 mRNA cleavage factor I 95.2 0.047 1E-06 42.5 5.2 45 114-164 76-122 (221)
97 PRK10880 adenine DNA glycosyla 94.3 0.075 1.6E-06 46.0 4.8 48 111-166 233-280 (350)
98 KOG4432 Uncharacterized NUDIX 94.2 0.042 9.2E-07 46.3 3.1 36 137-172 80-115 (405)
99 COG4112 Predicted phosphoester 91.3 0.76 1.7E-05 35.6 6.0 61 114-175 67-140 (203)
100 TIGR01084 mutY A/G-specific ad 90.9 0.56 1.2E-05 39.2 5.5 31 111-142 230-260 (275)
101 KOG4432 Uncharacterized NUDIX 90.7 0.41 8.9E-06 40.5 4.4 34 137-170 285-318 (405)
102 KOG0142 Isopentenyl pyrophosph 88.3 0.27 6E-06 39.3 1.6 61 110-170 54-124 (225)
103 KOG4548 Mitochondrial ribosoma 84.4 1.8 3.9E-05 35.7 4.4 43 120-165 139-182 (263)
104 PRK13910 DNA glycosylase MutY; 78.7 3.3 7.1E-05 34.9 4.2 26 114-142 192-217 (289)
105 COG1194 MutY A/G-specific DNA 78.0 2.2 4.7E-05 36.9 3.0 44 103-147 230-273 (342)
106 PF03487 IL13: Interleukin-13; 70.8 4.3 9.2E-05 24.0 2.1 25 139-163 12-36 (43)
107 PF14443 DBC1: DBC1 53.6 11 0.00025 27.9 2.2 20 149-168 40-59 (126)
108 KOG4313 Thiamine pyrophosphoki 49.0 38 0.00082 28.2 4.7 60 108-167 133-196 (306)
109 KOG2937 Decapping enzyme compl 39.7 6.7 0.00014 33.7 -1.0 65 99-167 229-295 (348)
110 PF12860 PAS_7: PAS fold 37.4 13 0.00029 25.8 0.4 42 110-156 5-46 (115)
111 PF00583 Acetyltransf_1: Acety 33.6 86 0.0019 19.6 3.9 40 40-79 44-83 (83)
112 TIGR01575 rimI ribosomal-prote 33.1 80 0.0017 21.5 4.0 48 40-87 73-120 (131)
113 TIGR02382 wecD_rffC TDP-D-fuco 30.9 83 0.0018 24.0 4.0 42 40-81 142-183 (191)
114 PF03068 PAD: Protein-arginine 29.0 31 0.00067 30.4 1.4 31 141-171 323-353 (385)
115 PF13420 Acetyltransf_4: Acety 25.0 1.7E+02 0.0036 20.9 4.6 51 39-89 94-145 (155)
116 PF09505 Dimeth_Pyl: Dimethyla 24.3 44 0.00096 29.0 1.4 22 145-166 409-430 (466)
117 PF11090 DUF2833: Protein of u 22.0 1.6E+02 0.0034 20.4 3.5 47 35-82 37-83 (86)
118 COG0828 RpsU Ribosomal protein 21.9 82 0.0018 20.7 2.1 18 140-157 1-18 (67)
119 PRK10140 putative acetyltransf 21.9 2.2E+02 0.0047 20.3 4.7 48 42-89 99-147 (162)
120 PRK07198 hypothetical protein; 20.4 1.1E+02 0.0024 27.1 3.2 46 115-166 157-202 (418)
121 COG4111 Uncharacterized conser 20.3 1.4E+02 0.0029 25.2 3.5 49 115-172 32-81 (322)
122 TIGR03827 GNAT_ablB putative b 20.0 2.7E+02 0.0058 22.6 5.3 61 20-85 6-66 (266)
No 1
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-34 Score=237.63 Aligned_cols=165 Identities=62% Similarity=1.003 Sum_probs=158.8
Q ss_pred ccceeccccCCCCEEEec-CCCCChHHHHHHHHHHHHHHHHcCcceEEEecCcccccchhHHHhcceeeeecCCcEEEEE
Q 030412 13 NKFLNGINDNYGGVVVQM-NEPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLV 91 (177)
Q Consensus 13 ~~~~~~~~d~~~gv~v~~-~~~~~~~~f~~~l~~~~~~w~~~~~~~vw~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~l~ 91 (177)
...+.+..|+||||.++. ..+.|...|.+.|++|+++|+.+|+.++|+++|...+++++.+++.||.|||+..+|.+++
T Consensus 19 ~~~l~~~~D~~ggv~v~~~~~~~d~~~f~~~l~~Sl~~W~~~Gr~~iwl~l~~~~~~lV~~a~~~gf~~hHae~~~~~l~ 98 (295)
T KOG0648|consen 19 SSLLAGLSDRYGGVVVDIVPEPMDEKLFIEELRASLQKWYLQGRKGIWLKLPEELARLVEEAAKYGFDYHHAESLYVMLT 98 (295)
T ss_pred hhhhcccccccCCEEeecccCCCCHHHHHHHHHHHHHHHHHccCcccceechHHHHhHHHHHHhcCcEEecccccceeee
Confidence 467799999999999999 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCCCCCcceeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccccee
Q 030412 92 YWIPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVE 171 (177)
Q Consensus 92 ~~l~~~~~~~p~~~~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~ 171 (177)
.|++..+.++|.++.|.++++++|+|.+++||+++.+.+.....|.|++|+|.|+++|++-++|+||++||||++.++.+
T Consensus 99 ~Wl~e~~~~lP~~Ash~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~e 178 (295)
T KOG0648|consen 99 SWLREAPSTLPANASHRVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVE 178 (295)
T ss_pred eeeccccccCCCchhhheeeeeeEecCCceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhhh
Confidence 99999999999999999999999999989999999987777778999999999999999999999999999999999999
Q ss_pred EEEEeC
Q 030412 172 VLAFRQ 177 (177)
Q Consensus 172 ~l~~r~ 177 (177)
++++||
T Consensus 179 Vla~r~ 184 (295)
T KOG0648|consen 179 VLAFRR 184 (295)
T ss_pred HHHHHh
Confidence 999886
No 2
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.69 E-value=1.3e-16 Score=120.59 Aligned_cols=67 Identities=22% Similarity=0.334 Sum_probs=57.9
Q ss_pred ceeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccce--eEEE
Q 030412 106 SHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFV--EVLA 174 (177)
Q Consensus 106 ~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~--~~l~ 174 (177)
++.++|+++|++.++++||+||...+. +|.|.||||++++||++++||+||++||||+++... ++++
T Consensus 10 ~p~v~v~~vI~~~~g~vLl~~R~~~p~--~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~ 78 (144)
T cd03430 10 TPLVSIDLIVENEDGQYLLGKRTNRPA--QGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLG 78 (144)
T ss_pred CCeEEEEEEEEeCCCeEEEEEccCCCC--CCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEE
Confidence 346789999999989999999987553 689999999999999999999999999999988655 5544
No 3
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.69 E-value=1.9e-16 Score=115.99 Aligned_cols=66 Identities=33% Similarity=0.526 Sum_probs=58.0
Q ss_pred eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF 175 (177)
Q Consensus 108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~ 175 (177)
+++|++++++.++++||++|.+.+ ..+.|.+|||++++||++.+||+||++||||+++....+++.
T Consensus 2 ~~~~~~~i~~~~~~vLL~~r~~~~--~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~ 67 (125)
T cd04679 2 RVGCGAAILRDDGKLLLVKRLRAP--EAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCV 67 (125)
T ss_pred ceEEEEEEECCCCEEEEEEecCCC--CCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEE
Confidence 468899999998999999997654 358999999999999999999999999999999877776654
No 4
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=2.5e-16 Score=115.70 Aligned_cols=67 Identities=63% Similarity=0.925 Sum_probs=58.4
Q ss_pred eeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEEe
Q 030412 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFR 176 (177)
Q Consensus 107 ~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~r 176 (177)
|.++|++++++.++++||++++.. ..+.|.+|||++++||++.+||+||++||||++......+++.
T Consensus 1 ~~~~~~~~v~~~~~~vLl~~r~~~---~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~ 67 (127)
T cd04670 1 HTVGVGGLVLNEKNEVLVVQERNK---TPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFR 67 (127)
T ss_pred CeeEEEEEEEcCCCeEEEEEccCC---CCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEE
Confidence 467899999999899999988754 2589999999999999999999999999999998877766643
No 5
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.66 E-value=3e-16 Score=119.04 Aligned_cols=70 Identities=34% Similarity=0.543 Sum_probs=59.9
Q ss_pred CcceeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEEe
Q 030412 104 NASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFR 176 (177)
Q Consensus 104 ~~~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~r 176 (177)
+..+.++|++++...+ ++||+||...|. .|.|.||||+++.||++++||.||++||||+++...+++++-
T Consensus 6 ~~~p~~~v~~~i~~~~-~iLLvrR~~~p~--~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~ 75 (145)
T COG1051 6 YRTPLVAVGALIVRNG-RILLVRRANEPG--AGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVF 75 (145)
T ss_pred CCCcceeeeEEEEeCC-EEEEEEecCCCC--CCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEEe
Confidence 3455667877776654 999999998875 589999999999999999999999999999998888888763
No 6
>PLN02325 nudix hydrolase
Probab=99.65 E-value=9.2e-16 Score=116.02 Aligned_cols=70 Identities=34% Similarity=0.534 Sum_probs=60.1
Q ss_pred CCcceeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412 103 ANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF 175 (177)
Q Consensus 103 ~~~~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~ 175 (177)
.++++.+++++++++. +++||+||...+ +.|.|.+|||++++||++.+||+||++||||+++....++++
T Consensus 4 ~~~~p~~~v~~vi~~~-~~vLL~rr~~~~--~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~ 73 (144)
T PLN02325 4 GEPIPRVAVVVFLLKG-NSVLLGRRRSSI--GDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTV 73 (144)
T ss_pred CCCCCeEEEEEEEEcC-CEEEEEEecCCC--CCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEE
Confidence 3456778888888875 799999987654 358999999999999999999999999999999988887765
No 7
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.64 E-value=9.6e-16 Score=115.43 Aligned_cols=67 Identities=39% Similarity=0.626 Sum_probs=57.1
Q ss_pred ceeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412 106 SHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA 174 (177)
Q Consensus 106 ~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~ 174 (177)
....++++++++.++++||++++.++ ..+.|+||||++++||++++||+||++||||+++.....++
T Consensus 11 ~~~~av~~vv~~~~~~vLL~~r~~~~--~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~ 77 (142)
T cd04700 11 VEARAAGAVILNERNDVLLVQEKGGP--KKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLG 77 (142)
T ss_pred eeeeeEEEEEEeCCCcEEEEEEcCCC--CCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEE
Confidence 44568888899988899999887654 36899999999999999999999999999999987666543
No 8
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.64 E-value=1.1e-15 Score=117.71 Aligned_cols=60 Identities=22% Similarity=0.309 Sum_probs=53.0
Q ss_pred eeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccc
Q 030412 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168 (177)
Q Consensus 107 ~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~ 168 (177)
+.++|+++|.+.+++|||+||...+ ..|.|+||||++++||++++||+||++||||+++.
T Consensus 16 ~~~~v~~vI~~~~g~VLL~kR~~~~--~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~ 75 (159)
T PRK15434 16 PLISLDFIVENSRGEFLLGKRTNRP--AQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLP 75 (159)
T ss_pred ceEEEEEEEECCCCEEEEEEccCCC--CCCcEECCceecCCCCCHHHHHHHHHHHHHCCccc
Confidence 3468888888888999999998654 36899999999999999999999999999999864
No 9
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.62 E-value=1.3e-15 Score=114.99 Aligned_cols=57 Identities=37% Similarity=0.534 Sum_probs=51.3
Q ss_pred eeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcc
Q 030412 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 167 (177)
Q Consensus 107 ~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~ 167 (177)
+.++|++++++.++++||+||... ++.|++|||++|+||++.+||+||++||||+++
T Consensus 6 ~~~~v~~vi~~~~~~vLl~~r~~~----~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~ 62 (148)
T PRK09438 6 RPVSVLVVIYTPDLGVLMLQRADD----PDFWQSVTGSLEEGETPAQTAIREVKEETGIDV 62 (148)
T ss_pred CceEEEEEEEeCCCeEEEEEecCC----CCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCc
Confidence 457889899998899999988642 478999999999999999999999999999987
No 10
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=2.3e-15 Score=110.69 Aligned_cols=65 Identities=43% Similarity=0.701 Sum_probs=57.2
Q ss_pred eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA 174 (177)
Q Consensus 108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~ 174 (177)
++++++++++.++++||++|...+ ..+.|.+|||++++||++.+||.||++||||+++....+++
T Consensus 2 ~~~v~~ii~~~~~~iLl~~r~~~~--~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~ 66 (129)
T cd04678 2 RVGVGVFVLNPKGKVLLGKRKGSH--GAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLT 66 (129)
T ss_pred ceEEEEEEECCCCeEEEEeccCCC--CCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEE
Confidence 468899999998999999998654 36899999999999999999999999999999987766654
No 11
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.61 E-value=1.9e-15 Score=114.14 Aligned_cols=63 Identities=43% Similarity=0.704 Sum_probs=55.5
Q ss_pred eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA 174 (177)
Q Consensus 108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~ 174 (177)
+.++++++++.++++||++|...+ +.|.+|||.+++||++.+||+||++||||+++....+++
T Consensus 3 ~~~v~~ii~~~~~~vLL~~r~~~~----~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~ 65 (147)
T cd03671 3 RPNVGVVLFNEDGKVFVGRRIDTP----GAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIA 65 (147)
T ss_pred CceEEEEEEeCCCEEEEEEEcCCC----CCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEE
Confidence 468888999988999999998654 689999999999999999999999999999987666554
No 12
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.61 E-value=3.5e-15 Score=109.89 Aligned_cols=64 Identities=41% Similarity=0.606 Sum_probs=55.3
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF 175 (177)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~ 175 (177)
.+++++++.++++||++|.+.+. ++.|.+|||++++||++.+||+||++||||+++....++++
T Consensus 2 ~~~~vv~~~~~~vLl~~r~~~~~--~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~ 65 (123)
T cd04671 2 IVAAVILNNQGEVLLIQEAKRSC--RGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSV 65 (123)
T ss_pred EEEEEEEcCCCEEEEEEecCCCC--CCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEE
Confidence 36677888889999999986553 58999999999999999999999999999999877776654
No 13
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.61 E-value=1.8e-15 Score=110.31 Aligned_cols=62 Identities=34% Similarity=0.496 Sum_probs=53.8
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA 174 (177)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~ 174 (177)
++.++++++ +++||+++...+ .++.|.+|||++++||++.+||+||++||||+++....+++
T Consensus 2 ~~~~ii~~~-~~vLl~~~~~~~--~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~ 63 (128)
T cd04684 2 GAYAVIPRD-GKLLLIQKNGGP--YEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLG 63 (128)
T ss_pred eeEEEEEeC-CEEEEEEccCCC--CCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeee
Confidence 567777776 899999998765 36899999999999999999999999999999887666554
No 14
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.61 E-value=3.5e-15 Score=108.62 Aligned_cols=61 Identities=25% Similarity=0.335 Sum_probs=49.8
Q ss_pred EEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeE
Q 030412 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV 172 (177)
Q Consensus 111 v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~ 172 (177)
|+++++++ +++||+||...+...+|.|.||||++++||++.+||+||++||||+++.....
T Consensus 3 v~~vi~~~-~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~ 63 (117)
T cd04691 3 VVGVLFSD-DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTY 63 (117)
T ss_pred EEEEEEEC-CEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceE
Confidence 44455554 89999998766543579999999999999999999999999999998644433
No 15
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.61 E-value=2.5e-15 Score=110.17 Aligned_cols=63 Identities=30% Similarity=0.480 Sum_probs=53.8
Q ss_pred eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA 174 (177)
Q Consensus 108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~ 174 (177)
.++|++++++.++++||+|+.. ..|.|.+|||++++||++.+||+||++||||+++....++.
T Consensus 2 ~~~v~~~i~~~~~~iLL~r~~~----~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~ 64 (125)
T cd04696 2 LVTVGALIYAPDGRILLVRTTK----WRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAM 64 (125)
T ss_pred ccEEEEEEECCCCCEEEEEccC----CCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEE
Confidence 3578888999889999998753 24899999999999999999999999999999887666544
No 16
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.61 E-value=3.3e-15 Score=109.88 Aligned_cols=63 Identities=33% Similarity=0.508 Sum_probs=54.6
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA 174 (177)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~ 174 (177)
+|.+++++.++++||++|...+. .+.|.+|||++++||++.+||.||++||||+++....+++
T Consensus 3 av~~~i~~~~~~vLL~~r~~~~~--~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~ 65 (130)
T cd04681 3 AVGVLILNEDGELLVVRRAREPG--KGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLF 65 (130)
T ss_pred eEEEEEEcCCCcEEEEEecCCCC--CCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEE
Confidence 57778888889999999976653 5899999999999999999999999999999887665543
No 17
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.60 E-value=3.1e-15 Score=109.53 Aligned_cols=62 Identities=27% Similarity=0.441 Sum_probs=52.7
Q ss_pred EEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF 175 (177)
Q Consensus 111 v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~ 175 (177)
+++++++.++++||++|.... .+.|.||||++++||++.+||+||++||||+++....+++.
T Consensus 3 ~~~ii~~~~~~vLL~~r~~~~---~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~ 64 (121)
T cd04669 3 ASIVIINDQGEILLIRRIKPG---KTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLI 64 (121)
T ss_pred eEEEEEeCCCEEEEEEEecCC---CCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEE
Confidence 566778877899999987543 47899999999999999999999999999999876665543
No 18
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.60 E-value=5e-15 Score=109.54 Aligned_cols=73 Identities=23% Similarity=0.342 Sum_probs=58.8
Q ss_pred CCCCCcceeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412 100 TLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF 175 (177)
Q Consensus 100 ~~p~~~~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~ 175 (177)
....|.++.+.+++++++. +++||++|...+ ..|.|.+|||++++||++++||+||++||||+++....++++
T Consensus 5 ~~~~~~~~~~~v~~ii~~~-~~vLL~kr~~~~--~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~ 77 (130)
T cd04511 5 GYIHYQNPKIIVGCVPEWE-GKVLLCRRAIEP--RHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAV 77 (130)
T ss_pred ccccCCCCcEEEEEEEecC-CEEEEEEecCCC--CCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEEE
Confidence 3344556667777777765 799999997655 358999999999999999999999999999998866655553
No 19
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.60 E-value=4.6e-15 Score=108.40 Aligned_cols=67 Identities=34% Similarity=0.579 Sum_probs=58.4
Q ss_pred eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA 174 (177)
Q Consensus 108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~ 174 (177)
+.+|++++++.++++||++|.+.+....+.|.+|||.+++||++.+||+||+.||||++......++
T Consensus 2 ~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~ 68 (134)
T PF00293_consen 2 RRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLG 68 (134)
T ss_dssp EEEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEE
T ss_pred CCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccce
Confidence 4688999999988999999998764456999999999999999999999999999999985555444
No 20
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.60 E-value=3e-15 Score=112.10 Aligned_cols=59 Identities=24% Similarity=0.276 Sum_probs=48.6
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccc
Q 030412 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168 (177)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~ 168 (177)
.+.+.+++.++++||+||.......+|.|++|||++++||++.+||+||++||||+++.
T Consensus 5 ~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~ 63 (141)
T PRK15472 5 TIVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLL 63 (141)
T ss_pred eEEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCcee
Confidence 34445555578999999876543346999999999999999999999999999998764
No 21
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.59 E-value=5.1e-15 Score=109.93 Aligned_cols=65 Identities=29% Similarity=0.415 Sum_probs=55.8
Q ss_pred eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEE
Q 030412 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVL 173 (177)
Q Consensus 108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l 173 (177)
..+|++++++.++++||+++.+.+. .++.|.+|||++++||++.+||+||++||||+.+.....+
T Consensus 2 ~~~v~v~~~~~~~~iLl~~~~~~~~-~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~ 66 (137)
T cd03424 2 PDAVAVLPYDDDGKVVLVRQYRPPV-GGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKL 66 (137)
T ss_pred CCEEEEEEEcCCCeEEEEEeeecCC-CCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEE
Confidence 3578889999999999998876654 3579999999999999999999999999999998655444
No 22
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.58 E-value=6.5e-15 Score=108.34 Aligned_cols=63 Identities=38% Similarity=0.641 Sum_probs=54.3
Q ss_pred eeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA 174 (177)
Q Consensus 107 ~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~ 174 (177)
+.+++++++++.++++||++|.. .+.|.||||++++||++.+||+||++||||+++....+++
T Consensus 6 ~~~~~~~~v~~~~~~vLL~~r~~-----~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~ 68 (132)
T cd04677 6 ILVGAGVILLNEQGEVLLQKRSD-----TGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLG 68 (132)
T ss_pred cccceEEEEEeCCCCEEEEEecC-----CCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEE
Confidence 45678888888889999998874 2689999999999999999999999999999987766554
No 23
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.58 E-value=5.4e-15 Score=108.03 Aligned_cols=59 Identities=22% Similarity=0.347 Sum_probs=48.2
Q ss_pred EEEEEEcCCceEEEEEeecC-CCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccc
Q 030412 111 VGAFVMNGKREVLVVQENSG-RFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEF 169 (177)
Q Consensus 111 v~~~v~~~~~~vLl~~r~~~-~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~ 169 (177)
|+++++..++++||++|... ..+.+|.|.||||+++.||++++||+||++||||+++..
T Consensus 3 v~~~~~~~~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~ 62 (122)
T cd04682 3 VALALLIGDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPE 62 (122)
T ss_pred eEEEEEEcCCEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccc
Confidence 33344444599999999765 233469999999999999999999999999999998754
No 24
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.57 E-value=7.3e-15 Score=106.41 Aligned_cols=63 Identities=41% Similarity=0.703 Sum_probs=52.3
Q ss_pred eEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA 174 (177)
Q Consensus 109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~ 174 (177)
+++++++++. +++||++|.+.+ ..+.|.+|||++++||++.+||.||++||||+++.....++
T Consensus 1 ~~v~~ii~~~-~~vLl~~r~~~~--~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~ 63 (122)
T cd04673 1 VAVGAVVFRG-GRVLLVRRANPP--DAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLT 63 (122)
T ss_pred CcEEEEEEEC-CEEEEEEEcCCC--CCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEE
Confidence 3567777765 789999987654 35899999999999999999999999999999976555544
No 25
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.57 E-value=7.9e-15 Score=107.07 Aligned_cols=64 Identities=30% Similarity=0.474 Sum_probs=54.9
Q ss_pred eEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeE
Q 030412 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV 172 (177)
Q Consensus 109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~ 172 (177)
++++++|.+.++++||+||...+.+.+|.|++|||++++||++.+||+||++||||+++....+
T Consensus 2 ~~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~ 65 (129)
T cd04699 2 VAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLR 65 (129)
T ss_pred ceEEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeee
Confidence 3677777887789999999877654568999999999999999999999999999998765554
No 26
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.56 E-value=1.3e-14 Score=105.29 Aligned_cols=57 Identities=32% Similarity=0.584 Sum_probs=48.5
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccc
Q 030412 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168 (177)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~ 168 (177)
+|.+++++ ++++||+||...+. .++.|.+|||++++||++.+||+||++||||+.+.
T Consensus 2 ~v~~vi~~-~~~vLL~~r~~~~~-~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~ 58 (120)
T cd04683 2 AVYVLLRR-DDEVLLQRRANTGY-MDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLD 58 (120)
T ss_pred cEEEEEEE-CCEEEEEEccCCCC-CCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccC
Confidence 45655655 58999999876554 36899999999999999999999999999999876
No 27
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.56 E-value=9.6e-15 Score=105.61 Aligned_cols=61 Identities=34% Similarity=0.523 Sum_probs=52.5
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccc-ceeEEEE
Q 030412 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE-FVEVLAF 175 (177)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~-~~~~l~~ 175 (177)
++.+++++.++++||++|+.. +.|.+|||++++||++++||+||++||||+.+. ...+++.
T Consensus 2 ~~~~~i~~~~~~vLL~~r~~~-----~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~ 63 (120)
T cd04680 2 GARAVVTDADGRVLLVRHTYG-----PGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGV 63 (120)
T ss_pred ceEEEEECCCCeEEEEEECCC-----CcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEE
Confidence 577788898899999998743 389999999999999999999999999999987 6665543
No 28
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.56 E-value=1.1e-14 Score=107.29 Aligned_cols=64 Identities=30% Similarity=0.377 Sum_probs=54.5
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEe-ceEEeCCCCCHHHHHHHHHHHHhCCcccceeEE
Q 030412 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSIDTEFVEVL 173 (177)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~l-PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l 173 (177)
++.+++++.++++||++|...+.+.+|.|++ |||++++||++.+||+||++||||+++.....+
T Consensus 2 ~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~ 66 (126)
T cd04697 2 ATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPL 66 (126)
T ss_pred eEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEe
Confidence 4667888999999999988766555799999 699999999999999999999999988654433
No 29
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.56 E-value=1.3e-14 Score=108.51 Aligned_cols=58 Identities=34% Similarity=0.519 Sum_probs=49.7
Q ss_pred EEEEEEEcCC-ceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeE
Q 030412 110 GVGAFVMNGK-REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV 172 (177)
Q Consensus 110 ~v~~~v~~~~-~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~ 172 (177)
.+++++++.+ +++||++|+. .+.|.+|||++++||++.+||+||++||||+++.....
T Consensus 4 ~~~~~v~~~~~~~vLLv~r~~-----~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~ 62 (138)
T cd03674 4 TASAFVVNPDRGKVLLTHHRK-----LGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRP 62 (138)
T ss_pred EEEEEEEeCCCCeEEEEEEcC-----CCcEECCceecCCCCCHHHHHHHHHHHHHCCCccccee
Confidence 5677888877 8999999864 37899999999999999999999999999998654433
No 30
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.55 E-value=2e-14 Score=105.18 Aligned_cols=62 Identities=35% Similarity=0.601 Sum_probs=53.4
Q ss_pred eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF 175 (177)
Q Consensus 108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~ 175 (177)
.++|.++++++ +++||+++++ .+.|.+|||++++||++.+||+||++||||+.+....++++
T Consensus 2 ~~~v~~~i~~~-~~vLL~~~~~-----~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~ 63 (123)
T cd04672 2 KVDVRAAIFKD-GKILLVREKS-----DGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAV 63 (123)
T ss_pred cceEEEEEEEC-CEEEEEEEcC-----CCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEE
Confidence 46788888876 7999998874 47899999999999999999999999999998866666654
No 31
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.55 E-value=2.6e-14 Score=105.12 Aligned_cols=62 Identities=27% Similarity=0.389 Sum_probs=50.9
Q ss_pred eEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA 174 (177)
Q Consensus 109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~ 174 (177)
.++.+++++ ++++||++|.... .+.|.+|||++++||++++||+||++||||+.+...+++.
T Consensus 2 ~~a~~iv~~-~~~vLl~~r~~~~---~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~ 63 (128)
T cd04687 2 NSAKAVIIK-NDKILLIKHHDDG---GVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLF 63 (128)
T ss_pred cEEEEEEEE-CCEEEEEEEEcCC---CCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEE
Confidence 356767776 5799999986532 4789999999999999999999999999999987655443
No 32
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.55 E-value=2.3e-14 Score=103.54 Aligned_cols=59 Identities=29% Similarity=0.505 Sum_probs=49.5
Q ss_pred EEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccc--eeEEE
Q 030412 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEF--VEVLA 174 (177)
Q Consensus 111 v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~--~~~l~ 174 (177)
+++++++.++++||++++. .+.|.||||++++||++++||+||++||||+.... ...++
T Consensus 3 ~~~~v~~~~~~vLl~~r~~-----~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~ 63 (118)
T cd04690 3 AAALILVRDGRVLLVRKRG-----TDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLG 63 (118)
T ss_pred EEEEEEecCCeEEEEEECC-----CCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEE
Confidence 4556777778999998863 47899999999999999999999999999998766 55443
No 33
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.54 E-value=4.8e-14 Score=116.20 Aligned_cols=107 Identities=16% Similarity=0.179 Sum_probs=76.2
Q ss_pred HHHHHHHHHHcCcceEEEecCcccccchhHHHhcceeeeecCCcEEEEEeeecCCCCCCCCCcceeeEEEEEEEcCCceE
Q 030412 43 LKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKREV 122 (177)
Q Consensus 43 l~~~~~~w~~~~~~~vw~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~l~~~l~~~~~~~p~~~~~~~~v~~~v~~~~~~v 122 (177)
....+..|+...+ .||.+...+... ..+....+ ..+....|+.+..+|.++|. .++++
T Consensus 88 ~a~~l~~w~~~~~-----fC~~CG~~~~~~-----------~~~~~~~C-----~~c~~~~yp~~~paViv~V~-~~~~i 145 (256)
T PRK00241 88 RAVQLAEFYRSHR-----FCGYCGHPMHPS-----------KTEWAMLC-----PHCRERYYPRIAPCIIVAVR-RGDEI 145 (256)
T ss_pred HHHHHHHHhhcCc-----cccccCCCCeec-----------CCceeEEC-----CCCCCEECCCCCCEEEEEEE-eCCEE
Confidence 4555778888865 677666655431 12222211 33455555556666665554 45899
Q ss_pred EEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412 123 LVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA 174 (177)
Q Consensus 123 Ll~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~ 174 (177)
||+++++.+ .|.|.+|||++++||++++||+||++||||+++....+++
T Consensus 146 LL~rr~~~~---~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~ 194 (256)
T PRK00241 146 LLARHPRHR---NGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVG 194 (256)
T ss_pred EEEEccCCC---CCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEE
Confidence 999987654 5899999999999999999999999999999988777664
No 34
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.54 E-value=2.4e-14 Score=106.13 Aligned_cols=61 Identities=31% Similarity=0.542 Sum_probs=50.9
Q ss_pred EEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412 112 GAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF 175 (177)
Q Consensus 112 ~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~ 175 (177)
.+++.+. +++||++|..++ ..+.|.+|||++++||++.+||+||++||||+++....+++.
T Consensus 5 ~~~i~~~-~~vLL~~r~~~~--~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~ 65 (137)
T cd03427 5 LCFIKDP-DKVLLLNRKKGP--GWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGI 65 (137)
T ss_pred EEEEEEC-CEEEEEEecCCC--CCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEE
Confidence 3344444 899999998765 368999999999999999999999999999998877666543
No 35
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.54 E-value=2.9e-14 Score=103.62 Aligned_cols=60 Identities=38% Similarity=0.694 Sum_probs=52.3
Q ss_pred eEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEE
Q 030412 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVL 173 (177)
Q Consensus 109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l 173 (177)
.++.+++++.++++||++|.. .+.|.||||++++||++.+||+||++||||+++....++
T Consensus 3 ~~v~~ii~~~~~~vLl~~r~~-----~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~ 62 (129)
T cd04676 3 PGVTAVVRDDEGRVLLIRRSD-----NGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLV 62 (129)
T ss_pred ceEEEEEECCCCeEEEEEecC-----CCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEE
Confidence 467778888889999999874 278999999999999999999999999999988766554
No 36
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.54 E-value=1.1e-14 Score=106.51 Aligned_cols=61 Identities=39% Similarity=0.631 Sum_probs=51.3
Q ss_pred eEEEEEEEcCC---ceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412 109 VGVGAFVMNGK---REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA 174 (177)
Q Consensus 109 ~~v~~~v~~~~---~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~ 174 (177)
.++++++++.+ ++|||+++++. +.|.||||++++||++.+||.||++||||+++.....++
T Consensus 2 ~~a~~ii~~~~~~~~~vLl~~~~~~-----~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~ 65 (131)
T cd03673 2 LAAGGVVFRGSDGGIEVLLIHRPRG-----DDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLG 65 (131)
T ss_pred eeEEEEEEEccCCCeEEEEEEcCCC-----CcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEE
Confidence 35777777764 89999998742 689999999999999999999999999999887665443
No 37
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.54 E-value=2e-14 Score=105.62 Aligned_cols=59 Identities=34% Similarity=0.544 Sum_probs=50.5
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEec-eEEeCCCCCHHHHHHHHHHHHhCCcccc
Q 030412 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSIDTEF 169 (177)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lP-gG~ve~gE~~~~aa~REl~EEtGl~~~~ 169 (177)
.|.+++++.+++|||+||.......+|.|++| ||++++||++ +||+||++||||+++..
T Consensus 2 ~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~ 61 (127)
T cd04693 2 VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDF 61 (127)
T ss_pred eEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcCh
Confidence 46677888889999999876554446899998 8999999999 99999999999998753
No 38
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.53 E-value=4e-14 Score=108.42 Aligned_cols=64 Identities=34% Similarity=0.485 Sum_probs=56.1
Q ss_pred eeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA 174 (177)
Q Consensus 107 ~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~ 174 (177)
++.++++++++.++++||+||... ++.|.+|||++++||++.+||.||++||||+++....+++
T Consensus 7 ~~~~v~~~i~~~~g~vLL~~r~~~----~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~ 70 (156)
T PRK00714 7 YRPNVGIILLNRQGQVFWGRRIGQ----GHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILA 70 (156)
T ss_pred CCCeEEEEEEecCCEEEEEEEcCC----CCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEE
Confidence 456899999999999999998742 4789999999999999999999999999999887666555
No 39
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.53 E-value=1.9e-14 Score=106.83 Aligned_cols=62 Identities=27% Similarity=0.454 Sum_probs=52.8
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA 174 (177)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~ 174 (177)
+|.+.+.+.++++||++|+..+ .+.|.+|||++++||++++||.||++||||+++.....++
T Consensus 2 ~v~i~l~~~~~~vLL~~r~~~~---~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~ 63 (131)
T cd03429 2 AVIVLVIDGGDRILLARQPRFP---PGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVG 63 (131)
T ss_pred eEEEEEEeCCCEEEEEEecCCC---CCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEe
Confidence 4555667777899999987643 5899999999999999999999999999999987776654
No 40
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.53 E-value=3.6e-14 Score=108.62 Aligned_cols=66 Identities=33% Similarity=0.427 Sum_probs=53.4
Q ss_pred EEEEEEEcCC--ceEEEEEeecCCCCCCCeEEeceEEeCCC-CCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412 110 GVGAFVMNGK--REVLVVQENSGRFRGTGIWKFPTGVVDEG-EDICVAAVREVKEETSIDTEFVEVLAF 175 (177)
Q Consensus 110 ~v~~~v~~~~--~~vLl~~r~~~~~~~~~~w~lPgG~ve~g-E~~~~aa~REl~EEtGl~~~~~~~l~~ 175 (177)
+|.+++.+.+ +++||+||.......+|.|+||||++++| |++.+||+||++||||+++....+++.
T Consensus 4 av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~ 72 (157)
T cd03426 4 AVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGR 72 (157)
T ss_pred EEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEE
Confidence 4455555543 68999999876533468999999999999 999999999999999999877666553
No 41
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.52 E-value=3.7e-14 Score=104.88 Aligned_cols=61 Identities=34% Similarity=0.467 Sum_probs=50.1
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA 174 (177)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~ 174 (177)
+|++++. .++++||++|.+. +.+.|.+|||++++||++.+||.||++||||+++....+++
T Consensus 2 ~v~~ii~-~~~~vLlv~r~~~---~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~ 62 (134)
T cd03675 2 TVAAVVE-RDGRFLLVEEETD---GGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLG 62 (134)
T ss_pred eEEEEEE-ECCEEEEEEEccC---CCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEE
Confidence 4555544 4579999998765 35899999999999999999999999999999886655544
No 42
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.52 E-value=2.4e-14 Score=108.52 Aligned_cols=55 Identities=36% Similarity=0.563 Sum_probs=47.6
Q ss_pred EEEEEEEcCC-ceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccc
Q 030412 110 GVGAFVMNGK-REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEF 169 (177)
Q Consensus 110 ~v~~~v~~~~-~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~ 169 (177)
.+++++++.+ +++||+|+.. .+.|+||||++++||++.+||+||++||||+++..
T Consensus 3 ~~gaii~~~~~~~vLLvr~~~-----~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~ 58 (145)
T cd03672 3 VYGAIILNEDLDKVLLVKGWK-----SKSWSFPKGKINKDEDDHDCAIREVYEETGFDISK 58 (145)
T ss_pred eeEEEEEeCCCCEEEEEEecC-----CCCEECCCccCCCCcCHHHHHHHHHHHhhCcccee
Confidence 5777888865 6999999863 24899999999999999999999999999998654
No 43
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.52 E-value=3.9e-14 Score=104.21 Aligned_cols=62 Identities=32% Similarity=0.447 Sum_probs=52.4
Q ss_pred EEEEEEEcC--CceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412 110 GVGAFVMNG--KREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA 174 (177)
Q Consensus 110 ~v~~~v~~~--~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~ 174 (177)
.|.+++++. ++++||+||... .++.|.+|||++++||++.+||+||++||||+.+.....+.
T Consensus 3 ~~~v~~~~~~~~~~vLL~~r~~~---~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~ 66 (129)
T cd04664 3 SVLVVPYRLTGEGRVLLLRRSDK---YAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLD 66 (129)
T ss_pred EEEEEEEEeCCCCEEEEEEeCCC---CCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEe
Confidence 466677776 899999999875 35899999999999999999999999999999875554443
No 44
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.52 E-value=8e-14 Score=101.59 Aligned_cols=62 Identities=24% Similarity=0.482 Sum_probs=51.7
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeE
Q 030412 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV 172 (177)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~ 172 (177)
.+++++.+.++++||+||+..+.+ .|.|+||||++++||++.+||.||+.||||+++.....
T Consensus 6 ~~~~ii~~~~~~vll~rR~~~~~~-~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~ 67 (129)
T PRK10776 6 IAVGIIRNPNNEIFITRRAADAHM-AGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATL 67 (129)
T ss_pred EEEEEEECCCCEEEEEEecCCCCC-CCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceE
Confidence 344556677889999999877654 49999999999999999999999999999998654443
No 45
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.51 E-value=5.6e-14 Score=102.85 Aligned_cols=60 Identities=25% Similarity=0.273 Sum_probs=49.9
Q ss_pred eEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA 174 (177)
Q Consensus 109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~ 174 (177)
+.|.+++++ ++++||++++. .+.|.+|||++++||++.+||+||++||||+++....+++
T Consensus 2 ~~~~~vi~~-~~~vLlv~~~~-----~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~ 61 (125)
T cd04689 2 LRARAIVRA-GNKVLLARVIG-----QPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLG 61 (125)
T ss_pred eEEEEEEEe-CCEEEEEEecC-----CCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEE
Confidence 356666664 67999998863 3689999999999999999999999999999887666654
No 46
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.51 E-value=8.1e-14 Score=103.06 Aligned_cols=62 Identities=29% Similarity=0.496 Sum_probs=50.7
Q ss_pred EEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEE
Q 030412 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVL 173 (177)
Q Consensus 111 v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l 173 (177)
+++++++.++++||+||+....+ .|.|.||||.+++||++.+||+||++||||+++....++
T Consensus 6 ~~~~ii~~~~~vLL~~R~~~~~~-~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~ 67 (135)
T PRK10546 6 VVAAIIERDGKILLAQRPAHSDQ-AGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYV 67 (135)
T ss_pred EEEEEEecCCEEEEEEccCCCCC-CCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeE
Confidence 34445566789999999776554 599999999999999999999999999999987655433
No 47
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.51 E-value=9.6e-14 Score=109.03 Aligned_cols=64 Identities=27% Similarity=0.334 Sum_probs=55.0
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA 174 (177)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~ 174 (177)
+|+++.++.++++||+++.+.+. +...|+||||.+|+||++++||+||++||||+++..+..++
T Consensus 49 ~v~v~~~~~~~~vlLvrq~r~~~-~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~ 112 (185)
T PRK11762 49 AVMIVPILDDDTLLLIREYAAGT-ERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLK 112 (185)
T ss_pred EEEEEEEeCCCEEEEEEeecCCC-CCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEE
Confidence 46666677788999999877664 56889999999999999999999999999999998877665
No 48
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.50 E-value=1.2e-13 Score=104.58 Aligned_cols=61 Identities=28% Similarity=0.464 Sum_probs=53.2
Q ss_pred eEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccc
Q 030412 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEF 169 (177)
Q Consensus 109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~ 169 (177)
+++++++++.++++||++|...+...+|.|.+|||++++||++.+||+||++||||+.+..
T Consensus 2 ~~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~ 62 (143)
T cd04694 2 VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDP 62 (143)
T ss_pred cEEEEEEEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccc
Confidence 4677788899999999999865533469999999999999999999999999999998764
No 49
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.49 E-value=1e-13 Score=102.91 Aligned_cols=58 Identities=33% Similarity=0.594 Sum_probs=47.5
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcc-cceeEE
Q 030412 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT-EFVEVL 173 (177)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~-~~~~~l 173 (177)
+|.++++++ ++|||+++++ .+.|.||||.+++||++.+||+||++||||+.+ .....+
T Consensus 2 ~~~~ii~~~-~~vLLv~~~~-----~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l 60 (131)
T cd04686 2 AVRAIILQG-DKILLLYTKR-----YGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKF 60 (131)
T ss_pred cEEEEEEEC-CEEEEEEEcC-----CCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEE
Confidence 466677764 7999999874 257999999999999999999999999999986 334333
No 50
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.49 E-value=1.1e-13 Score=101.38 Aligned_cols=59 Identities=25% Similarity=0.424 Sum_probs=48.7
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA 174 (177)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~ 174 (177)
.|.++++++ +++||+++.. .+.|.+|||++++||++.+||+||++||||+++....+++
T Consensus 3 ~v~~vi~~~-~~vLl~~~~~-----~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~ 61 (126)
T cd04688 3 RAAAIIIHN-GKLLVQKNPD-----ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLG 61 (126)
T ss_pred EEEEEEEEC-CEEEEEEeCC-----CCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeE
Confidence 455566654 4999998764 4789999999999999999999999999999887666554
No 51
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.48 E-value=1.1e-13 Score=104.06 Aligned_cols=59 Identities=20% Similarity=0.416 Sum_probs=50.3
Q ss_pred EEEEEEEcCC---ceEEEEEeecCCCCCCCeEEe-ceEEeCCCCCHHHHHHHHHHHHhCCccc
Q 030412 110 GVGAFVMNGK---REVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSIDTE 168 (177)
Q Consensus 110 ~v~~~v~~~~---~~vLl~~r~~~~~~~~~~w~l-PgG~ve~gE~~~~aa~REl~EEtGl~~~ 168 (177)
+|.+++++.+ +++|+++|.......+|.|++ |||++++||++.+||+||++||||+.+.
T Consensus 4 ~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~ 66 (144)
T cd04692 4 TFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVS 66 (144)
T ss_pred EEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCC
Confidence 4667888876 899999987654445799999 5999999999999999999999999764
No 52
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.47 E-value=3e-13 Score=98.77 Aligned_cols=62 Identities=27% Similarity=0.432 Sum_probs=52.1
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeE
Q 030412 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV 172 (177)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~ 172 (177)
.+++++++.++++|+++|...+.+ .|.|+||||.+++||++.++++||+.||||+++.....
T Consensus 6 ~~~~ii~~~~~~vLl~~R~~~~~~-~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~ 67 (128)
T TIGR00586 6 IAVGIIRNENGEIIITRRADGHMF-AKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEF 67 (128)
T ss_pred EEEEEEECCCCEEEEEEEeCCCCC-CCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeE
Confidence 445556677789999999877765 49999999999999999999999999999998765443
No 53
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.47 E-value=1.5e-13 Score=107.60 Aligned_cols=62 Identities=26% Similarity=0.265 Sum_probs=50.9
Q ss_pred eEEEEEEEcCCceEEEEEeecCCCCCCCeE-EeceEEeCCCCCHHHHHHHHHHHHhCCcccce
Q 030412 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIW-KFPTGVVDEGEDICVAAVREVKEETSIDTEFV 170 (177)
Q Consensus 109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w-~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~ 170 (177)
.++.++++++++++||++|.....+.+|.| .+|||++++||++.+||+|||+||||+.+...
T Consensus 38 ~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~ 100 (180)
T PRK15393 38 RATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPF 100 (180)
T ss_pred EEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccc
Confidence 356667889889999998876554445677 47999999999999999999999999986543
No 54
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.47 E-value=1e-13 Score=106.84 Aligned_cols=65 Identities=23% Similarity=0.408 Sum_probs=55.3
Q ss_pred eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEec-eEEeCCCCCHHHHHHHHHHHHhCCcccceeE
Q 030412 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSIDTEFVEV 172 (177)
Q Consensus 108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lP-gG~ve~gE~~~~aa~REl~EEtGl~~~~~~~ 172 (177)
..+|++++++.++++||.+|.......+|.|.+| ||++++||++++||+||++||||+.+....+
T Consensus 30 ~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~ 95 (165)
T cd02885 30 HRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLEL 95 (165)
T ss_pred eeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhh
Confidence 4467778889999999999987654457999996 8999999999999999999999998865544
No 55
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.46 E-value=1.8e-13 Score=98.46 Aligned_cols=54 Identities=30% Similarity=0.453 Sum_probs=45.6
Q ss_pred EEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEE
Q 030412 114 FVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVL 173 (177)
Q Consensus 114 ~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l 173 (177)
++...++++||++|.. +.|.+|||++++||++.+||.||++||||++......+
T Consensus 5 ~i~~~~~~vLlv~r~~------~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~ 58 (112)
T cd04667 5 VICRRGGRVLLVRKSG------SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYL 58 (112)
T ss_pred EEEecCCEEEEEEcCC------CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEE
Confidence 3444568999999862 78999999999999999999999999999987665544
No 56
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.46 E-value=2.1e-13 Score=100.37 Aligned_cols=59 Identities=32% Similarity=0.437 Sum_probs=47.8
Q ss_pred EEEEEEcC---CceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccce-eEEE
Q 030412 111 VGAFVMNG---KREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFV-EVLA 174 (177)
Q Consensus 111 v~~~v~~~---~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~-~~l~ 174 (177)
+++++++. .+++||+++++ .+.|.+|||++++||++.+||+||++||||++.... .+++
T Consensus 3 ~g~v~~~~~~~~~~vLLv~~~~-----~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~ 65 (122)
T cd04666 3 AGAIPYRETGGEVEVLLVTSRR-----TGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLG 65 (122)
T ss_pred EEEEEEEEcCCceEEEEEEecC-----CCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEE
Confidence 45555553 36899998864 278999999999999999999999999999987655 5554
No 57
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.46 E-value=1.9e-13 Score=116.90 Aligned_cols=61 Identities=31% Similarity=0.553 Sum_probs=51.4
Q ss_pred eeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccce
Q 030412 107 HRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFV 170 (177)
Q Consensus 107 ~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~ 170 (177)
..++++++++. +++|||++|...+ +.|.|.+|||++++||++++||+||++||||+++...
T Consensus 202 ~~vtv~avv~~-~g~VLLvrR~~~p--~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~ 262 (340)
T PRK05379 202 TFVTVDAVVVQ-SGHVLLVRRRAEP--GKGLWALPGGFLEQDETLLDACLRELREETGLKLPEP 262 (340)
T ss_pred cceEEEEEEEE-CCEEEEEEecCCC--CCCeEECCcccCCCCCCHHHHHHHHHHHHHCCccccc
Confidence 34677776665 5799999998765 3689999999999999999999999999999986543
No 58
>PLN03143 nudix hydrolase; Provisional
Probab=99.45 E-value=1.5e-12 Score=108.88 Aligned_cols=161 Identities=20% Similarity=0.258 Sum_probs=95.4
Q ss_pred ccccCccccccceeccccCCCCEEEecCCCCChHHHHHHHHHHH-HHHHHcCcceEEEecCcccccchhHHHhcceeeee
Q 030412 4 SVNSSSATVNKFLNGINDNYGGVVVQMNEPMDPQLFASLLKSSI-SHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHH 82 (177)
Q Consensus 4 ~~~~~~~~~~~~~~~~~d~~~gv~v~~~~~~~~~~f~~~l~~~~-~~w~~~~~~~vw~~~~~~~~~~~~~~~~~gf~~~~ 82 (177)
+++++++.....|.-....-..|.|.....++.++|++.+...+ +.|-+.-....=+. ......+-.+.++ +..+..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~-~vd~fg 99 (291)
T PLN03143 22 SSSSSSSPLTHSITLPGQPGQPVLVVAAPGISSSDFRKAIDSSLFRQWLKNLQSESGIL-AYGSMSLKQVLIQ-GVDMFG 99 (291)
T ss_pred ccCCCCCCceeEEEccCCCCCceeEecCCCCCHHHHHhHhcChHHHHHHHHhhhccccc-cCCCceeEEEEEE-EEeccc
Confidence 34455556667776665556778898877788889987776664 78866533211000 0011112222222 122223
Q ss_pred cCCcEEEEEee---ecCCCCCCCCCcc-eeeEEEEEEE-cCCce--EEEEEeecCCCCCCCeEEeceEEeCC-CCCHHHH
Q 030412 83 AEPNYLMLVYW---IPGGANTLPANAS-HRVGVGAFVM-NGKRE--VLVVQENSGRFRGTGIWKFPTGVVDE-GEDICVA 154 (177)
Q Consensus 83 ~~~~~~~l~~~---l~~~~~~~p~~~~-~~~~v~~~v~-~~~~~--vLl~~r~~~~~~~~~~w~lPgG~ve~-gE~~~~a 154 (177)
..-+|+.+..- ++++. ..+.... +..+|+++++ +.+++ ++|+++.+.+. +...|+||||.+|+ +|++.+|
T Consensus 100 ~~~gflkv~~d~~~l~~G~-~~~~~v~~rg~aVaVL~~l~~~ge~~VlLVrQ~R~pv-g~~~lE~PAG~lD~~~edp~~a 177 (291)
T PLN03143 100 KRIGFLKFKADIIDKETGQ-KVPGIVFARGPAVAVLILLESEGETYAVLTEQVRVPV-GKFVLELPAGMLDDDKGDFVGT 177 (291)
T ss_pred CceeEEEEEEEEEECCCCC-EeeEEEEEcCCeEEEEEEEeCCCCEEEEEEEeEecCC-CcEEEEecccccCCCCCCHHHH
Confidence 34455544432 23332 3343322 2234554444 44444 88888887665 45799999999997 4899999
Q ss_pred HHHHHHHHhCCccc
Q 030412 155 AVREVKEETSIDTE 168 (177)
Q Consensus 155 a~REl~EEtGl~~~ 168 (177)
|+||++||||+...
T Consensus 178 A~REL~EETG~~~~ 191 (291)
T PLN03143 178 AVREVEEETGIKLK 191 (291)
T ss_pred HHHHHHHHHCCccc
Confidence 99999999999764
No 59
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.43 E-value=8.2e-13 Score=98.68 Aligned_cols=58 Identities=29% Similarity=0.442 Sum_probs=50.6
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcc
Q 030412 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 167 (177)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~ 167 (177)
++.+++++.++++||+++........+.|.+|||++++||++.+||.||++||||+.+
T Consensus 2 ~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~ 59 (133)
T cd04685 2 AARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITV 59 (133)
T ss_pred eEEEEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCcc
Confidence 5778899999999999887643223589999999999999999999999999999987
No 60
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.42 E-value=1.8e-13 Score=100.51 Aligned_cols=57 Identities=40% Similarity=0.627 Sum_probs=47.4
Q ss_pred EEEEEEEcCCc---eEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeE
Q 030412 110 GVGAFVMNGKR---EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV 172 (177)
Q Consensus 110 ~v~~~v~~~~~---~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~ 172 (177)
++++++++.++ ++||+|++. +.|.+|||++++||++.+||+||++||||+++.....
T Consensus 4 ~~g~vi~~~~~~~~~vLl~~~~~------~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~ 63 (130)
T cd03428 4 SAGAIIYRRLNNEIEYLLLQASY------GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFI 63 (130)
T ss_pred EEEEEEEEecCCCceEEEEEccC------CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhh
Confidence 56666666433 799998873 6899999999999999999999999999998776554
No 61
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.42 E-value=7.3e-13 Score=95.30 Aligned_cols=62 Identities=37% Similarity=0.670 Sum_probs=51.4
Q ss_pred EEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEE
Q 030412 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVL 173 (177)
Q Consensus 111 v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l 173 (177)
+.+++.+.++++||++|+..+. .+|.|.||||+++++|++.++|.||+.||||++......+
T Consensus 4 ~~~~i~~~~~~~Ll~~r~~~~~-~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~ 65 (124)
T cd03425 4 VAAIIIDDDGRILIAQRPAGKH-LGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELL 65 (124)
T ss_pred EEEEEECCCCEEEEEEeCCCCC-CCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceE
Confidence 4445567779999999987764 4699999999999999999999999999999987654433
No 62
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.41 E-value=5e-13 Score=98.93 Aligned_cols=50 Identities=34% Similarity=0.470 Sum_probs=44.2
Q ss_pred cCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccc
Q 030412 117 NGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEF 169 (177)
Q Consensus 117 ~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~ 169 (177)
+.++++||++|... ..|.|.+|||++++||++.+||+||++||||+++..
T Consensus 11 ~~~~~vLl~~r~~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~ 60 (131)
T cd04695 11 DKETKVLLLKRVKT---LGGFWCHVAGGVEAGETAWQAALRELKEETGISLPE 60 (131)
T ss_pred CCCCEEEEEEecCC---CCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccc
Confidence 46789999999865 258999999999999999999999999999998753
No 63
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.41 E-value=4.2e-13 Score=105.66 Aligned_cols=67 Identities=18% Similarity=0.219 Sum_probs=54.6
Q ss_pred eeeEEEEEEEcC-CceEEEEEeecCCCC----CCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEE
Q 030412 107 HRVGVGAFVMNG-KREVLVVQENSGRFR----GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVL 173 (177)
Q Consensus 107 ~~~~v~~~v~~~-~~~vLl~~r~~~~~~----~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l 173 (177)
+..+|++++++. ++++||+++.+.+.. +...|+||||.+++||++++||+||++||||+++..+..+
T Consensus 43 ~~~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~ 114 (185)
T TIGR00052 43 RGNAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKL 114 (185)
T ss_pred cCCeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEE
Confidence 344677777765 579999998776542 4578999999999999999999999999999998766544
No 64
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.40 E-value=6.9e-13 Score=104.09 Aligned_cols=62 Identities=18% Similarity=0.385 Sum_probs=52.0
Q ss_pred eeEEEEEEEcCCceEEEEEeecCCCCCCCeEEec-eEEeCCCCCHHHHHHHHHHHHhCCcccc
Q 030412 108 RVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSIDTEF 169 (177)
Q Consensus 108 ~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lP-gG~ve~gE~~~~aa~REl~EEtGl~~~~ 169 (177)
..++++++++.+++|||+||..+...-+|.|.+| ||++++||++++||+||++||||+++..
T Consensus 34 h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~ 96 (184)
T PRK03759 34 HLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITD 96 (184)
T ss_pred eeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccc
Confidence 3467778889899999999865443346889986 8999999999999999999999998753
No 65
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.38 E-value=1.5e-12 Score=108.45 Aligned_cols=110 Identities=18% Similarity=0.187 Sum_probs=74.1
Q ss_pred HHHHHHHHHcCcceEEEecCcccccchhHHHhcceeeeecCCcEEEEEeeecCCCCCCCCCcceeeEEEEEEEcCCce-E
Q 030412 44 KSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKRE-V 122 (177)
Q Consensus 44 ~~~~~~w~~~~~~~vw~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~l~~~l~~~~~~~p~~~~~~~~v~~~v~~~~~~-v 122 (177)
..++..|...=+ .||.+-+...|.....+-.+. +.+.. .+ ...|++....|..++++.+++ .
T Consensus 140 ars~l~W~skyk-----FCp~CG~~tkp~e~g~k~~Cs---~~~C~--------~~-n~~yPr~dPvVIm~li~~d~~~~ 202 (345)
T KOG3084|consen 140 ARSLLDWVSKYK-----FCPGCGSPTKPEEAGTKLQCS---DETCP--------SC-NVIYPRTDPVVIMLLIDHDGKHA 202 (345)
T ss_pred HHHHHHHHHHhc-----cCcccCCCcccccCCccceee---cccCC--------cC-CeeccCCCCeEEEEEEcCCCCEe
Confidence 456678887633 788888888775554333322 11111 01 222334444566677776664 5
Q ss_pred EEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEE
Q 030412 123 LVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVL 173 (177)
Q Consensus 123 Ll~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l 173 (177)
||.|.++.+ +|+|..++|++|+||++++||+||++||||++++.+.++
T Consensus 203 LL~R~~r~~---~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~ 250 (345)
T KOG3084|consen 203 LLGRQKRYP---PGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYV 250 (345)
T ss_pred eeecccCCC---CchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeee
Confidence 555544443 589999999999999999999999999999999988754
No 66
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.38 E-value=1.8e-12 Score=102.56 Aligned_cols=65 Identities=26% Similarity=0.363 Sum_probs=50.7
Q ss_pred EEEEEEE--cCCceEEEEEeecCCCCCCCeEEeceEEeCCC-CCHHHHHHHHHHHHhCCcccceeEEE
Q 030412 110 GVGAFVM--NGKREVLVVQENSGRFRGTGIWKFPTGVVDEG-EDICVAAVREVKEETSIDTEFVEVLA 174 (177)
Q Consensus 110 ~v~~~v~--~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~g-E~~~~aa~REl~EEtGl~~~~~~~l~ 174 (177)
+++++.+ +.++.+|++||........|.|+||||.+|++ |++++||+||++||||++...+..++
T Consensus 32 aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg 99 (190)
T PRK10707 32 AAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIG 99 (190)
T ss_pred eEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEE
Confidence 4444444 34568999998765544568999999999985 68999999999999999987776554
No 67
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.38 E-value=2e-12 Score=92.18 Aligned_cols=58 Identities=38% Similarity=0.732 Sum_probs=50.4
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccce
Q 030412 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFV 170 (177)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~ 170 (177)
++++++++.++++||++|... ..|.|.+|||+++.||++.++|+||+.||+|+.....
T Consensus 2 ~~~~i~~~~~~~ill~kr~~~---~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~ 59 (123)
T cd02883 2 AVGAVILDEDGRVLLVRRADS---PGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVL 59 (123)
T ss_pred ceEEEEECCCCCEEEEEEcCC---CCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceee
Confidence 567777888789999999865 2589999999999999999999999999999987543
No 68
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.37 E-value=2.9e-12 Score=94.02 Aligned_cols=58 Identities=33% Similarity=0.491 Sum_probs=47.4
Q ss_pred EEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Q 030412 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAF 175 (177)
Q Consensus 111 v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~ 175 (177)
|.+++++ ++++||++++ .+.|++|||++++||++++||+||++||||+.+.....++.
T Consensus 3 v~vi~~~-~~~vLl~~~~------~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~ 60 (118)
T cd04665 3 VLVICFY-DDGLLLVRHK------DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGY 60 (118)
T ss_pred EEEEEEE-CCEEEEEEeC------CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEE
Confidence 4444454 4789998876 25799999999999999999999999999999877666553
No 69
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.37 E-value=4.1e-12 Score=93.30 Aligned_cols=55 Identities=29% Similarity=0.425 Sum_probs=42.9
Q ss_pred EEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccc
Q 030412 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168 (177)
Q Consensus 111 v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~ 168 (177)
+++++...+ .+||++|...+ ..+.|.||||++++||++.+||.||+.||||+++.
T Consensus 7 av~vl~~~~-~~lL~~r~~~~--~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~ 61 (118)
T cd04674 7 VVALLPVDD-GLLVIRRGIEP--GRGKLALPGGFIELGETWQDAVARELLEETGVAVD 61 (118)
T ss_pred EEEEEEECC-CEEEEEeecCC--CCCeEECCceecCCCCCHHHHHHHHHHHHHCCccc
Confidence 333443444 46666666544 36899999999999999999999999999999875
No 70
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.36 E-value=1e-12 Score=97.73 Aligned_cols=47 Identities=32% Similarity=0.496 Sum_probs=41.3
Q ss_pred CceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccc
Q 030412 119 KREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168 (177)
Q Consensus 119 ~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~ 168 (177)
++++||+|++.+. .|.|.||||.+++||++.+||+||++||||+.+.
T Consensus 12 ~~~~Llvk~~~~~---~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~ 58 (132)
T cd04661 12 DTLVLLVQQKVGS---QNHWILPQGKREEGETLRQTAERTLKELCGNNLK 58 (132)
T ss_pred CcEEEEEEeecCC---CCeeECCcccccCCCCHHHHHHHHHHHhhCCCce
Confidence 4689999987532 4899999999999999999999999999999755
No 71
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.35 E-value=3.7e-12 Score=97.77 Aligned_cols=59 Identities=27% Similarity=0.261 Sum_probs=47.8
Q ss_pred eEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA 174 (177)
Q Consensus 109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~ 174 (177)
..|++++... +++||+++.. ..|++|||++++||++.+||+||++||||+.+..+..++
T Consensus 25 ~~V~ii~~~~-~~~LL~~~~~------~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg 83 (156)
T TIGR02705 25 NHVLVIPRYK-DQWLLTEHKR------RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIG 83 (156)
T ss_pred CEEEEEEEEC-CEEEEEEEcC------CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEE
Confidence 4555555554 4888887762 359999999999999999999999999999988777665
No 72
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.33 E-value=3.4e-12 Score=97.88 Aligned_cols=60 Identities=23% Similarity=0.385 Sum_probs=50.9
Q ss_pred eEEEEEEEcCCceEEEEEeecCCCCCCCeEEec-eEEeCCCCCHHHHHHHHHHHHhCCcccce
Q 030412 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSIDTEFV 170 (177)
Q Consensus 109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lP-gG~ve~gE~~~~aa~REl~EEtGl~~~~~ 170 (177)
.+++++|++.++++||+||..+....+|.|++| ||+++.|| .+||+||++||||++....
T Consensus 28 ~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~ 88 (158)
T TIGR02150 28 RAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDV 88 (158)
T ss_pred EEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCcccc
Confidence 456678889999999999877654457999997 79999999 4999999999999987654
No 73
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.33 E-value=7.1e-12 Score=103.51 Aligned_cols=116 Identities=19% Similarity=0.209 Sum_probs=83.9
Q ss_pred CChHHHHHH-HHHHHHHHHHcCcceEEEecCcccccchhHHHhcceeeeecCCcEEEEEeeecCCCCCCCCCcceeeEEE
Q 030412 34 MDPQLFASL-LKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVG 112 (177)
Q Consensus 34 ~~~~~f~~~-l~~~~~~w~~~~~~~vw~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~l~~~l~~~~~~~p~~~~~~~~v~ 112 (177)
.+.+.|... -..++..|....+ .|+.+-... .....++.+.+ ..+....|+....+|.
T Consensus 90 ~~~~~~~~~~~a~~l~~w~~~~R-----FCg~CG~~~-----------~~~~~g~~~~C-----~~cg~~~fPR~dP~vI 148 (279)
T COG2816 90 LDEGLFGLAARAVQLLEWYRSHR-----FCGRCGTKT-----------YPREGGWARVC-----PKCGHEHFPRIDPCVI 148 (279)
T ss_pred CCHHHHHHHHHHHHHHHHHhhCc-----CCCCCCCcC-----------ccccCceeeeC-----CCCCCccCCCCCCeEE
Confidence 455555433 3445788888765 555444433 34445566654 3456666676677777
Q ss_pred EEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEEE
Q 030412 113 AFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLA 174 (177)
Q Consensus 113 ~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~ 174 (177)
+++.+.+. +||.++.++. +|++.+-+|+||+|||+++|+.||++||+|+++..+++++
T Consensus 149 v~v~~~~~-ilLa~~~~h~---~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~ 206 (279)
T COG2816 149 VAVIRGDE-ILLARHPRHF---PGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVG 206 (279)
T ss_pred EEEecCCc-eeecCCCCCC---CcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEe
Confidence 66666544 8888887765 5999999999999999999999999999999999988765
No 74
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.33 E-value=5.6e-12 Score=100.57 Aligned_cols=66 Identities=17% Similarity=0.195 Sum_probs=53.1
Q ss_pred eeEEEEEEEcC-CceEEEEEeecCCCC----CCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEE
Q 030412 108 RVGVGAFVMNG-KREVLVVQENSGRFR----GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVL 173 (177)
Q Consensus 108 ~~~v~~~v~~~-~~~vLl~~r~~~~~~----~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l 173 (177)
..+|+++.++. ++++||+++.+.+.. ++-.|++|+|.+|+||++++||+|||.||||+.+.....+
T Consensus 49 ~~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l 119 (202)
T PRK10729 49 GHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPV 119 (202)
T ss_pred CCeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEE
Confidence 34676777775 479999888777652 1358999999999999999999999999999998766544
No 75
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.33 E-value=7.2e-12 Score=92.89 Aligned_cols=58 Identities=36% Similarity=0.568 Sum_probs=44.4
Q ss_pred EEEEEEc---CCceEEEEEeecCC--CCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccc
Q 030412 111 VGAFVMN---GKREVLVVQENSGR--FRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168 (177)
Q Consensus 111 v~~~v~~---~~~~vLl~~r~~~~--~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~ 168 (177)
+++++++ ...+|||+++.... ....+.|++|||+++.||++.+||+||++||||+++.
T Consensus 3 ~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 3 AGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD 65 (126)
T ss_pred EEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence 4555554 23479999864320 0135899999999999999999999999999999865
No 76
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.28 E-value=1.8e-11 Score=95.51 Aligned_cols=62 Identities=16% Similarity=0.301 Sum_probs=52.2
Q ss_pred eeEEEEEEEcCC--ceEEEEEeecCCCCCCCeE-EeceEEeCCCCCHHHHHHHHHHHHhCCcccc
Q 030412 108 RVGVGAFVMNGK--REVLVVQENSGRFRGTGIW-KFPTGVVDEGEDICVAAVREVKEETSIDTEF 169 (177)
Q Consensus 108 ~~~v~~~v~~~~--~~vLl~~r~~~~~~~~~~w-~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~ 169 (177)
.+.+.+++.|.+ +++++.||.......+|.| .+|+|++++||++.+||+||++||||++...
T Consensus 34 ~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~ 98 (180)
T cd03676 34 GVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDL 98 (180)
T ss_pred EEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHH
Confidence 334445666765 8999999988776678999 4999999999999999999999999998764
No 77
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.21 E-value=5.2e-11 Score=94.27 Aligned_cols=66 Identities=20% Similarity=0.234 Sum_probs=52.9
Q ss_pred eeeEEEEEEEcC-CceEEEEEeecCCCC-----CCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeEE
Q 030412 107 HRVGVGAFVMNG-KREVLVVQENSGRFR-----GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVL 173 (177)
Q Consensus 107 ~~~~v~~~v~~~-~~~vLl~~r~~~~~~-----~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l 173 (177)
+..+|++++++. +++++|+++.+.+.+ +.-.|++|+|.+|+| ++++||+||+.||||+.+..+..+
T Consensus 44 ~~~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l 115 (191)
T PRK15009 44 RGNGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKL 115 (191)
T ss_pred ECCEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEe
Confidence 334677777775 679999998887752 457899999999976 699999999999999998766554
No 78
>PRK08999 hypothetical protein; Provisional
Probab=99.21 E-value=5.3e-11 Score=100.12 Aligned_cols=61 Identities=26% Similarity=0.565 Sum_probs=50.8
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccccee
Q 030412 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVE 171 (177)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~ 171 (177)
.+++++++.++++||+||.....+ .|.|+||||.+++||++.+||.||++||||+.+....
T Consensus 7 ~~~~vi~~~~~~vLL~kR~~~~~~-~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~ 67 (312)
T PRK08999 7 VAAGVIRDADGRILLARRPEGKHQ-GGLWEFPGGKVEPGETVEQALARELQEELGIEVTAAR 67 (312)
T ss_pred EEEEEEECCCCeEEEEEecCCCCC-CCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecce
Confidence 344456677789999999776654 5999999999999999999999999999999865443
No 79
>PLN02709 nudix hydrolase
Probab=99.17 E-value=9e-11 Score=94.68 Aligned_cols=55 Identities=27% Similarity=0.410 Sum_probs=47.7
Q ss_pred ceEEEEEeecCCCCCCCeEEeceEEeCCC-CCHHHHHHHHHHHHhCCcccceeEEE
Q 030412 120 REVLVVQENSGRFRGTGIWKFPTGVVDEG-EDICVAAVREVKEETSIDTEFVEVLA 174 (177)
Q Consensus 120 ~~vLl~~r~~~~~~~~~~w~lPgG~ve~g-E~~~~aa~REl~EEtGl~~~~~~~l~ 174 (177)
..+||.+|.......+|.|.||||++|++ +++.+||+||+.||+|+.....++++
T Consensus 51 ~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg 106 (222)
T PLN02709 51 LRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIIS 106 (222)
T ss_pred eEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEee
Confidence 48999999877544679999999999997 57999999999999999988777765
No 80
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.15 E-value=8e-11 Score=87.37 Aligned_cols=51 Identities=27% Similarity=0.401 Sum_probs=40.2
Q ss_pred EEEEEEcCCc--eEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcc
Q 030412 111 VGAFVMNGKR--EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 167 (177)
Q Consensus 111 v~~~v~~~~~--~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~ 167 (177)
|.+++.+.++ ++|+.+.+. +.|+||||.+++||++.+||+||++||||+++
T Consensus 3 ~~~~~~~~~~~~~ll~~r~~~------~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 3 CPAVLRRNGEVLELLVFEHPL------AGFQIVKGTVEPGETPEAAALRELQEESGLPS 55 (126)
T ss_pred EEEEEEeCCceEEEEEEEcCC------CcEECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence 4445555443 666665542 45999999999999999999999999999986
No 81
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.15 E-value=1.4e-10 Score=84.27 Aligned_cols=45 Identities=40% Similarity=0.736 Sum_probs=40.1
Q ss_pred ceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHH-HHHHHHHHHhCCccc
Q 030412 120 REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICV-AAVREVKEETSIDTE 168 (177)
Q Consensus 120 ~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~-aa~REl~EEtGl~~~ 168 (177)
+++|+.+++... +.|.||||.+++||++.+ ||+||++||||++..
T Consensus 24 ~~vl~~~~~~~~----~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~ 69 (161)
T COG0494 24 GEVLLAQRRDDG----GLWELPGGKVEPGEELPEEAAARELEEETGLRVK 69 (161)
T ss_pred CEEeEEEccccC----CceecCCcccCCCCchHHHHHHHHHHHHhCCeee
Confidence 788998888643 589999999999999888 999999999999887
No 82
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.06 E-value=2.1e-10 Score=90.46 Aligned_cols=42 Identities=31% Similarity=0.571 Sum_probs=37.3
Q ss_pred ceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCc
Q 030412 120 REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166 (177)
Q Consensus 120 ~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~ 166 (177)
-++|+++|+. .|.|.||||++++||++.+||.||++||||+.
T Consensus 49 l~vLl~~r~~-----~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~ 90 (186)
T cd03670 49 LQFVAIKRPD-----SGEWAIPGGMVDPGEKISATLKREFGEEALNS 90 (186)
T ss_pred eEEEEEEeCC-----CCcCcCCeeeccCCCCHHHHHHHHHHHHHccc
Confidence 3788888863 47899999999999999999999999999764
No 83
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=98.98 E-value=1e-09 Score=82.22 Aligned_cols=61 Identities=26% Similarity=0.408 Sum_probs=50.0
Q ss_pred eeeEEEEEEEcCCc---eEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccccee
Q 030412 107 HRVGVGAFVMNGKR---EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVE 171 (177)
Q Consensus 107 ~~~~v~~~v~~~~~---~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~ 171 (177)
.+..++++.+..++ +|||++-.+++ ..|-+|+|.+|++|+..+||+||..||.|+.-...+
T Consensus 8 ~r~vagCi~~r~~~~~ieVLlvsSs~~~----~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~ 71 (145)
T KOG2839|consen 8 FRLVAGCICYRSDKEKIEVLLVSSSKKP----HRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGR 71 (145)
T ss_pred cEEEEEeeeeeecCcceEEEEEecCCCC----CCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeec
Confidence 44566667765433 89999987643 579999999999999999999999999999876665
No 84
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=98.87 E-value=5.4e-09 Score=82.13 Aligned_cols=47 Identities=34% Similarity=0.520 Sum_probs=40.6
Q ss_pred CceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCc
Q 030412 119 KREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166 (177)
Q Consensus 119 ~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~ 166 (177)
+-.++|++.-+.|. +.-..+||+|.+|.||+++.||+|||+||||+.
T Consensus 87 ~~~ivL~kQfRpP~-Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~ 133 (225)
T KOG3041|consen 87 KPYIVLVKQFRPPT-GKICIELPAGLIDDGEDFEGAAIRELEEETGYK 133 (225)
T ss_pred cEEEEEEEeecCCC-CcEEEEcccccccCCCchHHHHHHHHHHHhCcc
Confidence 34678887777665 567889999999999999999999999999997
No 85
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=98.85 E-value=9.8e-09 Score=84.26 Aligned_cols=60 Identities=25% Similarity=0.308 Sum_probs=48.1
Q ss_pred eEEEEEEEcCCceEEEEEeecCCCCCCCeEEec-eEEeCCCCC-----------------HHHHHHHHHHHHhCCccc
Q 030412 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGED-----------------ICVAAVREVKEETSIDTE 168 (177)
Q Consensus 109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lP-gG~ve~gE~-----------------~~~aa~REl~EEtGl~~~ 168 (177)
.++.++|+|.++++||+||.......+|.|+.. +|++..||+ ..+||+||++|||||++.
T Consensus 57 ra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~ 134 (247)
T PLN02552 57 RAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPAE 134 (247)
T ss_pred EEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCCcc
Confidence 457778999999999999988777678999776 455554422 678999999999999854
No 86
>PLN02791 Nudix hydrolase homolog
Probab=98.80 E-value=1.3e-08 Score=94.78 Aligned_cols=60 Identities=22% Similarity=0.380 Sum_probs=52.9
Q ss_pred eEEEEEEEcC-CceEEEEEeecCCCCCCCeEEe-ceEEeCCCCCHHHHHHHHHHHHhCCccc
Q 030412 109 VGVGAFVMNG-KREVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSIDTE 168 (177)
Q Consensus 109 ~~v~~~v~~~-~~~vLl~~r~~~~~~~~~~w~l-PgG~ve~gE~~~~aa~REl~EEtGl~~~ 168 (177)
.++.+++++. ++++||+||.......+|.|++ |||+++.||+..+||+||+.||+||.+.
T Consensus 33 rAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~ 94 (770)
T PLN02791 33 RAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILP 94 (770)
T ss_pred EEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCC
Confidence 4577788886 6899999998877777899999 7999999999999999999999999754
No 87
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=98.55 E-value=3.7e-07 Score=65.13 Aligned_cols=50 Identities=22% Similarity=0.366 Sum_probs=43.0
Q ss_pred EEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhC
Q 030412 114 FVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETS 164 (177)
Q Consensus 114 ~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtG 164 (177)
+++..++++||.||+..+.++ |+|+||+|.++.+|+.+++..|++.+|.+
T Consensus 8 ~ii~~~~~~ll~kR~~~gl~~-glwefP~~~~~~~~~~~~~~~~~~~~~~~ 57 (118)
T cd03431 8 VVIRNDGRVLLEKRPEKGLLA-GLWEFPSVEWEEEADGEEALLSALKKALR 57 (118)
T ss_pred EEEecCCeEEEEECCCCCCCC-cceeCCCccccCCcCHHHHHHHHHHHHhC
Confidence 344556899999999888875 99999999999999999999999988875
No 88
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.42 E-value=4e-07 Score=73.45 Aligned_cols=55 Identities=31% Similarity=0.392 Sum_probs=45.8
Q ss_pred ceEEEEEeecCCCCCCCeEEeceEEeCCC-CCHHHHHHHHHHHHhCCcccceeEEE
Q 030412 120 REVLVVQENSGRFRGTGIWKFPTGVVDEG-EDICVAAVREVKEETSIDTEFVEVLA 174 (177)
Q Consensus 120 ~~vLl~~r~~~~~~~~~~w~lPgG~ve~g-E~~~~aa~REl~EEtGl~~~~~~~l~ 174 (177)
-.|||.+|.+......|.-.||||.+|+. ++-..+|.||.+||.|++.....+++
T Consensus 58 l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g 113 (246)
T KOG3069|consen 58 LSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLG 113 (246)
T ss_pred eEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhh
Confidence 47999999887776789999999999985 57778999999999999876655443
No 89
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=98.10 E-value=6.6e-06 Score=60.75 Aligned_cols=58 Identities=34% Similarity=0.598 Sum_probs=42.9
Q ss_pred EEEEEEEcC-Cc--eEEEEEeecCCCC---CCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccc
Q 030412 110 GVGAFVMNG-KR--EVLVVQENSGRFR---GTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168 (177)
Q Consensus 110 ~v~~~v~~~-~~--~vLl~~r~~~~~~---~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~ 168 (177)
+++++++.. .+ .|||+. +.+|.| +.|.|.+|.|....||++..||+||..||+||.+.
T Consensus 5 SAGvLlYR~~aG~v~VLLvH-PGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vd 68 (161)
T COG4119 5 SAGVLLYRARAGVVDVLLVH-PGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVD 68 (161)
T ss_pred cceeEEEEecCCCEEEEEec-CCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeec
Confidence 455555542 22 455543 445555 35899999999999999999999999999999763
No 90
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=97.99 E-value=5.4e-06 Score=66.45 Aligned_cols=38 Identities=37% Similarity=0.691 Sum_probs=34.2
Q ss_pred eEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHh
Q 030412 121 EVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEET 163 (177)
Q Consensus 121 ~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEt 163 (177)
+++.+||+. .+.|.+|||.+|+||.+-.+++||+.||.
T Consensus 140 e~vavkr~d-----~~~WAiPGGmvdpGE~vs~tLkRef~eEa 177 (275)
T KOG4195|consen 140 EFVAVKRPD-----NGEWAIPGGMVDPGEKVSATLKREFGEEA 177 (275)
T ss_pred EEEEEecCC-----CCcccCCCCcCCchhhhhHHHHHHHHHHH
Confidence 677888874 58999999999999999999999999985
No 91
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=97.65 E-value=4.8e-05 Score=54.67 Aligned_cols=54 Identities=19% Similarity=0.365 Sum_probs=34.7
Q ss_pred EEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccc
Q 030412 113 AFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168 (177)
Q Consensus 113 ~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~ 168 (177)
+++++.++++||.||+..+.++ |+|+||.-..+...+ .+.+.+.+.+..|+.+.
T Consensus 2 ~~i~~~~~~~Ll~kRp~~gll~-GLwefP~~e~~~~~~-~~~l~~~~~~~~~~~~~ 55 (114)
T PF14815_consen 2 LLIIRSQGRVLLEKRPEKGLLA-GLWEFPLIESDEEDD-EEELEEWLEEQLGLSIR 55 (114)
T ss_dssp EEEEETTSEEEEEE--SSSTTT-T-EE--EEE-SSS-C-HHHHHHHTCCSSS-EEE
T ss_pred EEEEEeCCEEEEEECCCCChhh-cCcccCEeCccCCCC-HHHHHHHHHHHcCCChh
Confidence 4678899999999999999886 999999988874333 55555566677777543
No 92
>PLN02839 nudix hydrolase
Probab=97.64 E-value=0.0013 Score=56.83 Aligned_cols=119 Identities=14% Similarity=0.126 Sum_probs=74.1
Q ss_pred CChHHHHHHHHHHHHHHHHcCcceEEEecCcccccchhHHHhcceeeeecCCcEEEEEeeecCCCCCCCCCcceeeEEEE
Q 030412 34 MDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGA 113 (177)
Q Consensus 34 ~~~~~f~~~l~~~~~~w~~~~~~~vw~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~l~~~l~~~~~~~p~~~~~~~~v~~ 113 (177)
.++++-.+.|+.-+..|++.+.=.=| ..++.++....| .+-+..+ ......+-...+..+-+.+
T Consensus 147 ~t~~~Rt~al~~v~~~lr~~g~~~gW------RnE~y~V~~~~~------~~~l~~i----ERaA~~lfGi~tyGVHlNG 210 (372)
T PLN02839 147 QKPEDRTRAVADVIKILGDKGIIPGI------RNELYPVKPSFN------APVFFSL----ERAAAPYFGIKGYGVHMNG 210 (372)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCc------ccCccccccCCC------CcceEEE----eeccccccCceeEEEEEEE
Confidence 35778888898889999998752223 222333221100 1122222 1122222222233344444
Q ss_pred EEEc-CCceEEEEEeecCCCCCCCeEEe-ceEEeCCCCCHHHHHHHHHHHHhCCccc
Q 030412 114 FVMN-GKREVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSIDTE 168 (177)
Q Consensus 114 ~v~~-~~~~vLl~~r~~~~~~~~~~w~l-PgG~ve~gE~~~~aa~REl~EEtGl~~~ 168 (177)
++.. .+.++.+.||.......+|+|+- .+|.+..||++.++++||..||.|+...
T Consensus 211 yv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~ 267 (372)
T PLN02839 211 YVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKA 267 (372)
T ss_pred EEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHH
Confidence 4433 34579999998777777899976 6899999999999999999999999754
No 93
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=97.48 E-value=0.00013 Score=56.65 Aligned_cols=62 Identities=19% Similarity=0.269 Sum_probs=51.6
Q ss_pred eEEEEEEEcCCceEEEEEeecCCCCCCCeEEec-eEEeCCCCCHHHHHHHHHHHHhCCcccce
Q 030412 109 VGVGAFVMNGKREVLVVQENSGRFRGTGIWKFP-TGVVDEGEDICVAAVREVKEETSIDTEFV 170 (177)
Q Consensus 109 ~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lP-gG~ve~gE~~~~aa~REl~EEtGl~~~~~ 170 (177)
.+..++++|.+|++||.||......-++.|.-- .|+--+||+..+|++|-+.+|+||+....
T Consensus 34 rAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~ 96 (185)
T COG1443 34 RAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQY 96 (185)
T ss_pred hhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCccc
Confidence 456779999999999999976655557888763 57777999999999999999999987643
No 94
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=96.08 E-value=0.034 Score=43.89 Aligned_cols=41 Identities=29% Similarity=0.429 Sum_probs=30.5
Q ss_pred ceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCc
Q 030412 120 REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166 (177)
Q Consensus 120 ~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~ 166 (177)
-+|||.|.. ...|.||||...+||+..++..|.+.+-.|..
T Consensus 58 PHvLLLq~~------~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~ 98 (188)
T PF13869_consen 58 PHVLLLQIG------NTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPE 98 (188)
T ss_dssp EEEEEEEET------TTEEE-SEEE--TT--HHHHHHHHHHHHHB-S
T ss_pred cEEEEEecc------CccccCCccEeCCCCChhHHHHHHHHHHcCCC
Confidence 479999864 35899999999999999999999999998875
No 95
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=96.04 E-value=0.00071 Score=57.30 Aligned_cols=54 Identities=33% Similarity=0.550 Sum_probs=44.1
Q ss_pred EEEEEEEcCC-ceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCccc
Q 030412 110 GVGAFVMNGK-REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTE 168 (177)
Q Consensus 110 ~v~~~v~~~~-~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~ 168 (177)
..++.++|+. .++||++... ...|.||-|++..+|+-.++|+||+.||||.+..
T Consensus 84 v~ga~ild~~~sr~llv~g~q-----a~sw~fprgK~~kdesd~~caiReV~eetgfD~s 138 (348)
T KOG2937|consen 84 VRGAIILDEKRSRCLLVKGWQ-----ASSWSFPRGKISKDESDSDCAIREVTEETGFDYS 138 (348)
T ss_pred CchHhhhhhhhhhhheeecee-----cccccccCccccccchhhhcchhcccchhhcCHH
Confidence 5667788864 4678877653 2459999999999999999999999999998753
No 96
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=95.20 E-value=0.047 Score=42.49 Aligned_cols=45 Identities=24% Similarity=0.401 Sum_probs=37.2
Q ss_pred EEEcCC--ceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhC
Q 030412 114 FVMNGK--REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETS 164 (177)
Q Consensus 114 ~v~~~~--~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtG 164 (177)
+++.+. -+|||.|-. ...+++|||..++||+-.+.+.|-+.|-.|
T Consensus 76 livheH~lPHvLLLQig------~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 76 LIVHEHNLPHVLLLQIG------NTFFKLPGGRLRPGEDEADGLKRLLTESLG 122 (221)
T ss_pred EEEeecCCCeEEEEeeC------CEEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence 444443 578888754 468999999999999999999999999999
No 97
>PRK10880 adenine DNA glycosylase; Provisional
Probab=94.27 E-value=0.075 Score=45.96 Aligned_cols=48 Identities=21% Similarity=0.307 Sum_probs=32.4
Q ss_pred EEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCc
Q 030412 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166 (177)
Q Consensus 111 v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~ 166 (177)
..++++..++++||.||+..+.|+ |+|+||.. +..+ ..++..|+.|+.
T Consensus 233 ~~~~~~~~~~~~~l~~r~~~gl~~-gl~~fP~~--~~~~-----~~~~~~~~~~~~ 280 (350)
T PRK10880 233 GYFLLLQHGDEVWLEQRPPSGLWG-GLFCFPQF--ADEE-----ELRQWLAQRGIA 280 (350)
T ss_pred EEEEEEEECCEEEEEECCccChhh-ccccCCCC--cchh-----hHHHHHHhcCCc
Confidence 333455566899999999888885 99999963 2211 235555777764
No 98
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=94.24 E-value=0.042 Score=46.34 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=31.7
Q ss_pred eEEeceEEeCCCCCHHHHHHHHHHHHhCCcccceeE
Q 030412 137 IWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEV 172 (177)
Q Consensus 137 ~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~ 172 (177)
..++.+|.+|...++.+-|..|+.||+|++++..++
T Consensus 80 tielc~g~idke~s~~eia~eev~eecgy~v~~d~l 115 (405)
T KOG4432|consen 80 TIELCAGLIDKELSPREIASEEVAEECGYRVDPDDL 115 (405)
T ss_pred eeeeeccccccccCHHHHhHHHHHHHhCCcCChhHc
Confidence 458889999999999999999999999999876543
No 99
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=91.29 E-value=0.76 Score=35.65 Aligned_cols=61 Identities=23% Similarity=0.383 Sum_probs=38.5
Q ss_pred EEEcCCceEEEEEeecCCCCC--CCeEEe-ceEEeCCCC---CHHHH----HHHHHHHHhCCc---ccceeEEEE
Q 030412 114 FVMNGKREVLVVQENSGRFRG--TGIWKF-PTGVVDEGE---DICVA----AVREVKEETSID---TEFVEVLAF 175 (177)
Q Consensus 114 ~v~~~~~~vLl~~r~~~~~~~--~~~w~l-PgG~ve~gE---~~~~a----a~REl~EEtGl~---~~~~~~l~~ 175 (177)
++.+. .+||+-.|-.+.... -+.+.+ -||++..++ +.++. +.|||.||.++. ...+..+||
T Consensus 67 vi~~e-devliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGl 140 (203)
T COG4112 67 VIMDE-DEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGL 140 (203)
T ss_pred EEecC-CEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeee
Confidence 34454 499998886443210 145666 489998654 33332 679999999996 445555554
No 100
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=90.95 E-value=0.56 Score=39.24 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=24.2
Q ss_pred EEEEEEcCCceEEEEEeecCCCCCCCeEEece
Q 030412 111 VGAFVMNGKREVLVVQENSGRFRGTGIWKFPT 142 (177)
Q Consensus 111 v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPg 142 (177)
..+++.+.++++|+.||+....++ |+|+||+
T Consensus 230 ~~~~~~~~~~~~~~~~r~~~~~~~-gl~~~p~ 260 (275)
T TIGR01084 230 YFLVLQNYDGEVLLEQRPEKGLWG-GLYCFPQ 260 (275)
T ss_pred EEEEEEeCCCeEEEEeCCCCchhh-ccccCCC
Confidence 333444667899999998887775 9999997
No 101
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=90.72 E-value=0.41 Score=40.54 Aligned_cols=34 Identities=26% Similarity=0.112 Sum_probs=28.5
Q ss_pred eEEeceEEeCCCCCHHHHHHHHHHHHhCCcccce
Q 030412 137 IWKFPTGVVDEGEDICVAAVREVKEETSIDTEFV 170 (177)
Q Consensus 137 ~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~ 170 (177)
..+|.+|.|+..-+..+-|.||..||+|+++...
T Consensus 285 TlELcag~Vd~p~s~~e~a~~e~veecGYdlp~~ 318 (405)
T KOG4432|consen 285 TLELCAGRVDDPFSDPEKAARESVEECGYDLPED 318 (405)
T ss_pred eeeeecccCCCCcccHHHHHHHHHHHhCCCCCHH
Confidence 4567788998878899999999999999987543
No 102
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.31 E-value=0.27 Score=39.25 Aligned_cols=61 Identities=28% Similarity=0.445 Sum_probs=42.9
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEe---------ceEEeC-CCCCHHHHHHHHHHHHhCCcccce
Q 030412 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKF---------PTGVVD-EGEDICVAAVREVKEETSIDTEFV 170 (177)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~l---------PgG~ve-~gE~~~~aa~REl~EEtGl~~~~~ 170 (177)
+..++++|.++++||.||......-++.|.- |+..-+ .+.....||+|-|.-|.||..+.+
T Consensus 54 aFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v 124 (225)
T KOG0142|consen 54 AFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEV 124 (225)
T ss_pred eeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCcccc
Confidence 5677899999999999998765544555532 121111 123567899999999999987654
No 103
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=84.38 E-value=1.8 Score=35.74 Aligned_cols=43 Identities=21% Similarity=0.404 Sum_probs=36.2
Q ss_pred ceEEEEEeecCCCCCCCeEEeceEEe-CCCCCHHHHHHHHHHHHhCC
Q 030412 120 REVLVVQENSGRFRGTGIWKFPTGVV-DEGEDICVAAVREVKEETSI 165 (177)
Q Consensus 120 ~~vLl~~r~~~~~~~~~~w~lPgG~v-e~gE~~~~aa~REl~EEtGl 165 (177)
.-+||++++.+. .+.|.||-+.. ++++++...|.|+|.+-.|=
T Consensus 139 ~LyLLV~~k~g~---~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge 182 (263)
T KOG4548|consen 139 KLYLLVKRKFGK---SSVWIFPNRQFSSSEKTLRGHAERDLKVLSGE 182 (263)
T ss_pred eEEEEEeeccCc---cceeeCCCcccCCccchHHHHHHHHHHHHhcc
Confidence 457888876554 47999999999 99999999999999988874
No 104
>PRK13910 DNA glycosylase MutY; Provisional
Probab=78.66 E-value=3.3 Score=34.94 Aligned_cols=26 Identities=15% Similarity=0.396 Sum_probs=19.5
Q ss_pred EEEcCCceEEEEEeecCCCCCCCeEEece
Q 030412 114 FVMNGKREVLVVQENSGRFRGTGIWKFPT 142 (177)
Q Consensus 114 ~v~~~~~~vLl~~r~~~~~~~~~~w~lPg 142 (177)
+++ .++++||.||. ...|+ |+|+||+
T Consensus 192 ~~~-~~~~~ll~kr~-~~l~~-gl~~fP~ 217 (289)
T PRK13910 192 VVI-QNNQIALEKIE-QKLYL-GMHHFPN 217 (289)
T ss_pred EEE-ECCEEEEEECC-Cchhc-ccccCCC
Confidence 344 35789999885 55665 9999996
No 105
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=78.02 E-value=2.2 Score=36.85 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=33.6
Q ss_pred CCcceeeEEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCC
Q 030412 103 ANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDE 147 (177)
Q Consensus 103 ~~~~~~~~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~ 147 (177)
+........+.++.+.+++++|.+|...+.++ |+|.||......
T Consensus 230 k~~~~~~~~~~~~~~~~~~~~l~kr~~~gl~~-gl~~fP~~e~~~ 273 (342)
T COG1194 230 KKKLPRRFAAFLILNRDGEVLLEKRPEKGLLG-GLWCFPQFEDEA 273 (342)
T ss_pred ccccchheeeEEEEccCcchhhhhCcccCcee-cccccccccccc
Confidence 33333455666777889999999999988876 999999876544
No 106
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=70.79 E-value=4.3 Score=23.97 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=11.8
Q ss_pred EeceEEeCCCCCHHHHHHHHHHHHh
Q 030412 139 KFPTGVVDEGEDICVAAVREVKEET 163 (177)
Q Consensus 139 ~lPgG~ve~gE~~~~aa~REl~EEt 163 (177)
..-||...||--+..++.||+-||.
T Consensus 12 tClggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 12 TCLGGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp -----------S-HHHHHHHHHHHH
T ss_pred HHhcccCCCCCCCchHHHHHHHHHH
Confidence 3457888888888899999999985
No 107
>PF14443 DBC1: DBC1
Probab=53.60 E-value=11 Score=27.85 Aligned_cols=20 Identities=30% Similarity=0.312 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHHHhCCccc
Q 030412 149 EDICVAAVREVKEETSIDTE 168 (177)
Q Consensus 149 E~~~~aa~REl~EEtGl~~~ 168 (177)
..+..+|+|-++|-|||+..
T Consensus 40 ~~LI~TAiR~~K~~tgiDLS 59 (126)
T PF14443_consen 40 SVLIRTAIRTCKALTGIDLS 59 (126)
T ss_pred HHHHHHHHHHHHHHhccchh
Confidence 36789999999999999863
No 108
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=49.02 E-value=38 Score=28.23 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=42.2
Q ss_pred eeEEEEEEEcCC---ceEEEEEeecCCCCCCCeEEe-ceEEeCCCCCHHHHHHHHHHHHhCCcc
Q 030412 108 RVGVGAFVMNGK---REVLVVQENSGRFRGTGIWKF-PTGVVDEGEDICVAAVREVKEETSIDT 167 (177)
Q Consensus 108 ~~~v~~~v~~~~---~~vLl~~r~~~~~~~~~~w~l-PgG~ve~gE~~~~aa~REl~EEtGl~~ 167 (177)
.+-+.+.|.+.+ -.+.+.||......-+++|+- -+|.+.-|-.+.++|+.|..||..+..
T Consensus 133 GvhingYV~~pk~~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~ 196 (306)
T KOG4313|consen 133 GVHINGYVRHPKLGPLCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPS 196 (306)
T ss_pred eeeeeeeecCCCcCceEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCch
Confidence 344444555543 357777776554333566653 578888889999999999999999876
No 109
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=39.65 E-value=6.7 Score=33.72 Aligned_cols=65 Identities=23% Similarity=0.314 Sum_probs=43.1
Q ss_pred CCCCCCcceeeEEEEEEEc--CCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCcc
Q 030412 99 NTLPANASHRVGVGAFVMN--GKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDT 167 (177)
Q Consensus 99 ~~~p~~~~~~~~v~~~v~~--~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~ 167 (177)
++.|.+.......+.++.+ .+.-+.++.+... +-.|.||-|.+..||-..++++|+-.||+|.+.
T Consensus 229 ak~~e~~~~~~tl~~~~t~v~~d~~~~aqS~~~~----~e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~ 295 (348)
T KOG2937|consen 229 AKFPEKKSTVPTLGAALTDVEMDHVVTAQSYFAK----PENWTFPKGKISRGEKPRDASIRSTFEEPGFPF 295 (348)
T ss_pred hcCcccCccchhHHhhhhccccccceeecccccc----cccccCcccccccCCccccchhhhcCCCcCCcc
Confidence 3444444334444444444 2333444433332 468999999999999999999999999999864
No 110
>PF12860 PAS_7: PAS fold
Probab=37.43 E-value=13 Score=25.76 Aligned_cols=42 Identities=10% Similarity=0.194 Sum_probs=32.7
Q ss_pred EEEEEEEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHH
Q 030412 110 GVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAV 156 (177)
Q Consensus 110 ~v~~~v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~ 156 (177)
..+++++|.++++++..++. ..+|.+|...+.+|-++.+.+.
T Consensus 5 ~~Gv~v~D~~~rl~~~N~~~-----~~l~~~~~~~~~~G~~~~~l~~ 46 (115)
T PF12860_consen 5 PQGVAVFDSDGRLVFWNQRF-----RELFGLPPEMLRPGASFRDLLR 46 (115)
T ss_pred CceEEEEcCCCeEEeEcHHH-----HHHhCCCHHHhcCCCCHHHHHH
Confidence 45667899999999998875 3578899888888887666544
No 111
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=33.63 E-value=86 Score=19.64 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHcCcceEEEecCcccccchhHHHhccee
Q 030412 40 ASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFW 79 (177)
Q Consensus 40 ~~~l~~~~~~w~~~~~~~vw~~~~~~~~~~~~~~~~~gf~ 79 (177)
+..++..+...++.+.+.+++.+...+.....-..+.||+
T Consensus 44 ~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k~Gf~ 83 (83)
T PF00583_consen 44 SKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEKLGFE 83 (83)
T ss_dssp HHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHHTTEE
T ss_pred hhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHHcCCC
Confidence 4455556666677788999999988887777777777774
No 112
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=33.10 E-value=80 Score=21.49 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHcCcceEEEecCcccccchhHHHhcceeeeecCCcE
Q 030412 40 ASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNY 87 (177)
Q Consensus 40 ~~~l~~~~~~w~~~~~~~vw~~~~~~~~~~~~~~~~~gf~~~~~~~~~ 87 (177)
++.|+..++.-++.+.+.+|+.+............+.||........|
T Consensus 73 ~~ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~ 120 (131)
T TIGR01575 73 RALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYKKLGFNEIAIRRNY 120 (131)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEecccHHHHHHHHHcCCCcccccccc
Confidence 334444445556667789999988877777778888999775444333
No 113
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=30.94 E-value=83 Score=24.00 Aligned_cols=42 Identities=7% Similarity=0.140 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHcCcceEEEecCcccccchhHHHhcceeee
Q 030412 40 ASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFH 81 (177)
Q Consensus 40 ~~~l~~~~~~w~~~~~~~vw~~~~~~~~~~~~~~~~~gf~~~ 81 (177)
+..++..+..+++.+...||+.+...+........+.||.+.
T Consensus 142 ~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~klGF~~~ 183 (191)
T TIGR02382 142 AELMQTALNWCYARGLTRLRVATQMGNTAALRLYIRSGANIE 183 (191)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCccc
Confidence 455666677777888899999999888888888889999764
No 114
>PF03068 PAD: Protein-arginine deiminase (PAD); InterPro: IPR013530 In the presence of calcium ions, Protein-arginine deiminase (PAD) enzymes 3.5.3.15 from EC catalyse the post-translational modification reaction responsible for the formation of citrulline residues from protein-bound arginine residues []. Four PAD isotypes of PAD have been identified in mammals, a fifth may also exist. Non-mammalian vertebrates appear to have only a single PAD enzyme. All known natural substrates of PAD are proteins known to have an important structural function, such as keratin (PAD1), intermediate filaments or proteins associated with intermediate filaments. Citrulination may have consequences for the structural integrity and interactions of these proteins. Physiological levels of calcium appear to be too low to activate these enzymes suggesting a role between PAD activation and loss of calcium homeostasis during terminal differentiation and cell death (apoptosis). ; GO: 0004668 protein-arginine deiminase activity, 0005509 calcium ion binding, 0005737 cytoplasm; PDB: 3B1U_A 3B1T_A 2DW5_A 3APN_A 1WD9_A 2DEX_X 1WD8_A 2DEY_X 2DEW_X 1WDA_A ....
Probab=29.04 E-value=31 Score=30.40 Aligned_cols=31 Identities=35% Similarity=0.595 Sum_probs=22.7
Q ss_pred ceEEeCCCCCHHHHHHHHHHHHhCCccccee
Q 030412 141 PTGVVDEGEDICVAAVREVKEETSIDTEFVE 171 (177)
Q Consensus 141 PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~ 171 (177)
|-|-+-.|.+..+.++|+++|-.|+++.+++
T Consensus 323 P~GP~i~G~d~~e~~v~~~~~~~G~~v~fiD 353 (385)
T PF03068_consen 323 PFGPVIDGRDCLEEAVRELLEPAGLNVTFID 353 (385)
T ss_dssp ----EETTEEHHHHHHHHHHGGGT-EEEEE-
T ss_pred CcCCccCCEehHHHHHHHHHhhcCCEEEEEe
Confidence 4466667999999999999999999987754
No 115
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=25.03 E-value=1.7e+02 Score=20.88 Aligned_cols=51 Identities=12% Similarity=0.044 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHH-HHcCcceEEEecCcccccchhHHHhcceeeeecCCcEEE
Q 030412 39 FASLLKSSISHW-RQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLM 89 (177)
Q Consensus 39 f~~~l~~~~~~w-~~~~~~~vw~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~ 89 (177)
-+..+...+... ++.+.+.+.+.++..+...+....+.||.......++..
T Consensus 94 g~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~~~~~~ 145 (155)
T PF13420_consen 94 GRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGELKDHIF 145 (155)
T ss_dssp HHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEEEecEEE
Confidence 355566666666 788899999999999999999999999988765555544
No 116
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=24.32 E-value=44 Score=29.01 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=17.4
Q ss_pred eCCCCCHHHHHHHHHHHHhCCc
Q 030412 145 VDEGEDICVAAVREVKEETSID 166 (177)
Q Consensus 145 ve~gE~~~~aa~REl~EEtGl~ 166 (177)
|++.+-..+.+.||++||++|-
T Consensus 409 V~~~dLsDe~~MrelReeL~IG 430 (466)
T PF09505_consen 409 VEPMDLSDEYVMRELREELNIG 430 (466)
T ss_pred CChhhcccHHHHHHHHHhcCcc
Confidence 4555666788999999999974
No 117
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=22.03 E-value=1.6e+02 Score=20.39 Aligned_cols=47 Identities=17% Similarity=0.206 Sum_probs=36.7
Q ss_pred ChHHHHHHHHHHHHHHHHcCcceEEEecCcccccchhHHHhcceeeee
Q 030412 35 DPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHH 82 (177)
Q Consensus 35 ~~~~f~~~l~~~~~~w~~~~~~~vw~~~~~~~~~~~~~~~~~gf~~~~ 82 (177)
..-+|.+.+...++.+++. +..+|=.|-..+...+--+-..|+.||.
T Consensus 37 ~~~eF~k~i~~~~d~~l~~-Y~~l~N~V~~~N~~HIRfLk~lGA~f~~ 83 (86)
T PF11090_consen 37 ERREFRKLIKEYLDKMLKQ-YPVLWNFVWVGNKSHIRFLKSLGAVFHN 83 (86)
T ss_pred hhHHHHHHHHHHHHHHHHH-hhheeEEEEeCCHHHHHHHHhcCcEEcc
Confidence 3356999999888888777 6778877777777778777778888874
No 118
>COG0828 RpsU Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]
Probab=21.93 E-value=82 Score=20.73 Aligned_cols=18 Identities=33% Similarity=0.298 Sum_probs=14.5
Q ss_pred eceEEeCCCCCHHHHHHH
Q 030412 140 FPTGVVDEGEDICVAAVR 157 (177)
Q Consensus 140 lPgG~ve~gE~~~~aa~R 157 (177)
+|...|..||+++.|+.|
T Consensus 1 M~~v~V~ene~~d~ALrr 18 (67)
T COG0828 1 MPQVKVRENEPLDKALRR 18 (67)
T ss_pred CCeeeecCCChHHHHHHH
Confidence 477889999999888754
No 119
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=21.92 E-value=2.2e+02 Score=20.30 Aligned_cols=48 Identities=15% Similarity=0.188 Sum_probs=33.6
Q ss_pred HHHHHHHHHHH-cCcceEEEecCcccccchhHHHhcceeeeecCCcEEE
Q 030412 42 LLKSSISHWRQ-QAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLM 89 (177)
Q Consensus 42 ~l~~~~~~w~~-~~~~~vw~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~ 89 (177)
.|...+..++. .+...+++.+...+...+....+.||........+..
T Consensus 99 ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~~y~k~GF~~~g~~~~~~~ 147 (162)
T PRK10140 99 LMREMIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEGTGKKYAL 147 (162)
T ss_pred HHHHHHHHHHhhCCccEEEEEEEcCCHHHHHHHHHCCCEEEeeccccee
Confidence 34444444455 4678888888888888888888999988776665553
No 120
>PRK07198 hypothetical protein; Validated
Probab=20.39 E-value=1.1e+02 Score=27.15 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=30.9
Q ss_pred EEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHHHHHhCCc
Q 030412 115 VMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSID 166 (177)
Q Consensus 115 v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~ 166 (177)
+++.++++.+.+-.-. -.|-|||=.-..| --+.+++|-|+|+||=.
T Consensus 157 i~~~~g~~~vtk~av~-----pvwylpgva~rfg-~~e~~lrr~lfe~t~g~ 202 (418)
T PRK07198 157 ILLANGDVVVTKAAIE-----PVWYLPGVAERFG-VSETDLRRTLFEQTGGM 202 (418)
T ss_pred eecCCCcEEEEEeeec-----ccccccchHHHcC-CCHHHHHHHHHHHcCCC
Confidence 3456677777776644 4699998433332 34567889999999943
No 121
>COG4111 Uncharacterized conserved protein [General function prediction only]
Probab=20.29 E-value=1.4e+02 Score=25.15 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=32.2
Q ss_pred EEcCCceEEEEEeecCCCCCCCeEEeceEEeCCCCCHHHHHHHHH-HHHhCCcccceeE
Q 030412 115 VMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREV-KEETSIDTEFVEV 172 (177)
Q Consensus 115 v~~~~~~vLl~~r~~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl-~EEtGl~~~~~~~ 172 (177)
|.+.+-.||-+.... .+|.|-.++.-...++-.|.- .+.|+.....+++
T Consensus 32 v~~~~p~VLtV~q~~---------aLP~GPfep~hrslq~glr~wV~~qT~~plGYiEQ 81 (322)
T COG4111 32 VTDGGPRVLTVRQGA---------ALPSGPFEPAHRSLQAGLRAWVEKQTSQPLGYIEQ 81 (322)
T ss_pred EcCCCceEEEecccc---------cCCCCCCchHHHHHHHHHHHHHHHHhcCccchHHh
Confidence 334445677776541 399999999876666666664 5678877666543
No 122
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=20.03 E-value=2.7e+02 Score=22.56 Aligned_cols=61 Identities=8% Similarity=0.067 Sum_probs=39.7
Q ss_pred ccCCCCEEEecCCCCChHHHHHHHHHHHHHHHHcCcceEEEecCcccccchhHHHhcceeeeecCC
Q 030412 20 NDNYGGVVVQMNEPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEP 85 (177)
Q Consensus 20 ~d~~~gv~v~~~~~~~~~~f~~~l~~~~~~w~~~~~~~vw~~~~~~~~~~~~~~~~~gf~~~~~~~ 85 (177)
.|+||.-. ... .....+..+.+...+..-++.+...|+.++|.+. .+...+.||.....-+
T Consensus 6 ~~~~~~r~-~~~-~~~~~~~~~~~~~~~~~a~~~~~~ki~~~~~~~~---~~~~~~~g~~~e~~i~ 66 (266)
T TIGR03827 6 HGPFNDRI-YVM-KLTGNDVEALIPDLDALAKKEGYTKIIAKVPGSD---KPLFEERGYLEEAKIP 66 (266)
T ss_pred cCCCCCeE-EEE-ecCCccHHHHHHHHHHHHHHcCCcEEEEEccHHH---HHHHHHCCCeEEEecc
Confidence 56777665 331 1122334555566667779999999999999775 6667788886654333
Done!