BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030413
(177 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P281|BAHC1_HUMAN BAH and coiled-coil domain-containing protein 1 OS=Homo sapiens
GN=BAHCC1 PE=1 SV=3
Length = 2608
Score = 68.9 bits (167), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
Query: 7 GIPTKTKTGK---RDLESYTIRGTNKIVRVGDCVLMRPSDTGKPPYVARIEKIESDARNN 63
G PT+ + K R L I + +RVGDC + + PY+ RIE + +N
Sbjct: 2457 GNPTQRRGMKGKARKLFYKAIVRGEETLRVGDCAVFLSAGRPNLPYIGRIESMWESWGSN 2516
Query: 64 VKVRVRWYYRPEESLGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKL 119
+ V+V+W+Y PEE+ G+RQ G L+ S H D TI KC V + + Y ++
Sbjct: 2517 MVVKVKWFYHPEETKLGKRQCDGKNALYQSCHEDENDVQTISHKCQVVAREQYEQM 2572
>sp|Q3UHR0|BAHC1_MOUSE BAH and coiled-coil domain-containing protein 1 OS=Mus musculus
GN=Bahcc1 PE=2 SV=2
Length = 2643
Score = 68.2 bits (165), Expect = 3e-11, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 3/116 (2%)
Query: 7 GIPTKTKTGK---RDLESYTIRGTNKIVRVGDCVLMRPSDTGKPPYVARIEKIESDARNN 63
G PT+ + K R L I + +R+GDC + + PY+ RIE + +N
Sbjct: 2492 GNPTQRRGMKGKARKLFYKAIVRGKETLRIGDCAVFLSAGRPNLPYIGRIESLWESWGSN 2551
Query: 64 VKVRVRWYYRPEESLGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKL 119
+ V+V+W+Y PEE+ G+RQ G L+ S H D TI KC V + Y ++
Sbjct: 2552 MVVKVKWFYHPEETKLGKRQSDGKNALYQSCHEDENDVQTISHKCQVVGREQYEQM 2607
>sp|Q90941|PB1_CHICK Protein polybromo-1 OS=Gallus gallus GN=PBRM1 PE=1 SV=1
Length = 1633
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 6/145 (4%)
Query: 28 NKIVRVGDCVLMRPSDTGKPPYVARIEKIESDARNNVKVRVRWYYRPEESLGGRRQFHGA 87
N + VGD V + P++ P++ IE++ D+ + W+YRP E+ +
Sbjct: 953 NSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLE 1012
Query: 88 KELFLSDHYDVQSAHTIEGKCIVHSFKNYTKL--ENVGAED-YYCRFEYKAASGGFTQTE 144
KE+F SD+Y+ I GKC+V K Y KL EN ED Y C Y A + F + +
Sbjct: 1013 KEVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVYVCESRYSAKTKSFKKIK 1072
Query: 145 L--LCTANVRCLITRMISWYNVRGA 167
L + ++VR + R + VR A
Sbjct: 1073 LWTMPVSSVR-FVPRDVPLPVVRVA 1096
Score = 36.6 bits (83), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 1 MAKTRPGIPTKTKTGKRDLESYTIRGTNKI-VRVGDCVLMRPSDTGKPPYVARIEKIESD 59
+ K + +P + G+ + N + ++VGDCV ++ +P V RIEK+
Sbjct: 1126 LEKDKEDVPVEMSNGEPGCHYFEQLCYNDMWLKVGDCVFIKSHGLVRP-RVGRIEKMW-- 1182
Query: 60 ARNNVKVRVRWYY-----RPEESLGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFK 114
V+ +++ PEE+ + KE+FLS+ + I GKC V SFK
Sbjct: 1183 ----VRDGAAYFFGPIFIHPEETEHEPTKMFYKKEVFLSNLEETCPMSCILGKCAVLSFK 1238
Query: 115 NY 116
++
Sbjct: 1239 DF 1240
>sp|Q3LHL9|WGE_DROME Protein winged eye OS=Drosophila melanogaster GN=wge PE=1 SV=1
Length = 1658
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/106 (37%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 23 TIRGTNKIVRVGDCVLMRPSDTGKP--PYVARIEKIESDARNNVKVRVRWYYRPEESLG- 79
TI+ + + VGD + TG+P PY+ RIE + N VRV W+Y PEE+ G
Sbjct: 1504 TIKRGKETITVGDSAVFL--STGRPDRPYIGRIESMWETTTGNKVVRVAWFYHPEETTGC 1561
Query: 80 GRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKLENVGAE 125
+ +F GA LF S H D TI +C V F +Y E GA+
Sbjct: 1562 PKLKFPGA--LFESPHEDENDVQTISHRCEVLQFGSY--FEKFGAD 1603
>sp|Q8BSQ9|PB1_MOUSE Protein polybromo-1 OS=Mus musculus GN=Pbrm1 PE=1 SV=4
Length = 1634
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 28 NKIVRVGDCVLMRPSDTGKPPYVARIEKIESDARNNVKVRVRWYYRPEESLGGRRQFHGA 87
N + VGD V + P++ P++ IE++ D+ + W+YRP E+ +
Sbjct: 955 NSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLE 1014
Query: 88 KELFLSDHYDVQSAHTIEGKCIVHSFKNYTKL--ENVGAED-YYCRFEYKAASGGFTQTE 144
KE+F SD+Y+ I GKC+V K Y KL EN ED + C Y A + F + +
Sbjct: 1015 KEVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVFVCESRYSAKTKSFKKIK 1074
Query: 145 L 145
L
Sbjct: 1075 L 1075
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 1 MAKTRPGIPTKTKTGKRDLESY-TIRGTNKIVRVGDCVLMRPSDTGKPPYVARIEKIESD 59
+ K + +P + G+ + +R + ++VGDCV ++ +P V RIEK+
Sbjct: 1127 LEKEKEDVPVEMSNGEPGCHYFEQLRYNDMWLKVGDCVFIKSHGLVRP-RVGRIEKVW-- 1183
Query: 60 ARNNVKVRVRWYY-----RPEESLGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFK 114
V+ ++Y PEE+ + KE+FLS+ + I GKC V SFK
Sbjct: 1184 ----VRDGAAYFYGPIFIHPEETEHEPTKMFYKKEVFLSNLEETCPMSCILGKCAVLSFK 1239
Query: 115 NY 116
++
Sbjct: 1240 DF 1241
>sp|Q86U86|PB1_HUMAN Protein polybromo-1 OS=Homo sapiens GN=PBRM1 PE=1 SV=1
Length = 1689
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 6/145 (4%)
Query: 28 NKIVRVGDCVLMRPSDTGKPPYVARIEKIESDARNNVKVRVRWYYRPEESLGGRRQFHGA 87
N + VGD V + P++ P++ IE++ D+ + W+YRP E+ +
Sbjct: 955 NSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLE 1014
Query: 88 KELFLSDHYDVQSAHTIEGKCIVHSFKNYTKL--ENVGAED-YYCRFEYKAASGGFTQTE 144
KE+F SD+Y+ I GKC+V K Y KL EN ED + C Y A + F + +
Sbjct: 1015 KEVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVFVCESRYSAKTKSFKKIK 1074
Query: 145 L--LCTANVRCLITRMISWYNVRGA 167
L + ++VR + R + VR A
Sbjct: 1075 LWTMPISSVR-FVPRDVPLPVVRVA 1098
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 1 MAKTRPGIPTKTKTGKRDLESYTIRGTNKI-VRVGDCVLMRPSDTGKPPYVARIEKIESD 59
+ K + +P + G+ + N + ++VGDCV ++ +P V RIEK+
Sbjct: 1127 LEKEKEDVPVEMSNGEPGCHYFEQLHYNDMWLKVGDCVFIKSHGLVRP-RVGRIEKVW-- 1183
Query: 60 ARNNVKVRVRWYY-----RPEESLGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFK 114
V+ ++Y PEE+ + KE+FLS+ + I GKC V SFK
Sbjct: 1184 ----VRDGAAYFYGPIFIHPEETEHEPTKMFYKKEVFLSNLEETCPMTCILGKCAVLSFK 1239
Query: 115 NY 116
++
Sbjct: 1240 DF 1241
>sp|O15417|TNC18_HUMAN Trinucleotide repeat-containing gene 18 protein OS=Homo sapiens
GN=TNRC18 PE=1 SV=3
Length = 2968
Score = 60.5 bits (145), Expect = 5e-09, Method: Composition-based stats.
Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 38/178 (21%)
Query: 7 GIPTKTKTGK---RDLESYTIRGTNKIVRVGDCVLMRPSDTGKPPYVARIEKIESDARNN 63
G PT+ + K R L I +++R+GDC + + PY+ RI+ + NN
Sbjct: 2792 GKPTQRRGMKGKARKLFYKAIVRGKEMIRIGDCAVFLSAGRPNLPYIGRIQSMWESWGNN 2851
Query: 64 VKVRVRWYYRPEESLGGRRQFHGA--------------------------KELFLSDHYD 97
+ VRV+W+Y PEE+ G +QFH + L+ S H D
Sbjct: 2852 MVVRVKWFYHPEETSPG-KQFHQGQHWDQKSSRSLPAALRVSSQRKDFMERALYQSSHVD 2910
Query: 98 VQSAHTIEGKCIVHSFKNYTK-LENVGAED----YYCRFEYKAASGGFTQTE---LLC 147
T+ KC+V + Y + L+ +D YY Y+ +G T+ +LC
Sbjct: 2911 ENDVQTVSHKCLVVGLEQYEQMLKTKKYQDSEGLYYLAGTYEPTTGMIFSTDGVPVLC 2968
>sp|Q80WC3|TNC18_MOUSE Trinucleotide repeat-containing gene 18 protein OS=Mus musculus
GN=Tnrc18 PE=1 SV=2
Length = 2878
Score = 60.5 bits (145), Expect = 6e-09, Method: Composition-based stats.
Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 38/178 (21%)
Query: 7 GIPTKTKTGK---RDLESYTIRGTNKIVRVGDCVLMRPSDTGKPPYVARIEKIESDARNN 63
G PT+ + K R L I +++R+GDC + + PY+ RI+ + NN
Sbjct: 2702 GKPTQRRGMKGKARKLFYKAIVRGKEMIRIGDCAVFLSAGRPNLPYIGRIQSMWESWGNN 2761
Query: 64 VKVRVRWYYRPEESLGGRRQFHGA--------------------------KELFLSDHYD 97
+ VRV+W+Y PEE+ G +QFH + L+ S H D
Sbjct: 2762 MVVRVKWFYHPEETSPG-KQFHEGQHWDQKSGHSLPAALRASSQRKDFMERALYQSSHVD 2820
Query: 98 VQSAHTIEGKCIVHSFKNYTK-LENVGAED----YYCRFEYKAASGGFTQTE---LLC 147
T+ KC+V + Y + L+ +D YY Y+ +G T+ +LC
Sbjct: 2821 ENDVQTVSHKCLVVGLEQYEQMLKTKKYQDSEGLYYLAGTYEPTTGMIFSTDGVPVLC 2878
>sp|Q497V6|BAHD1_MOUSE Bromo adjacent homology domain-containing 1 protein OS=Mus musculus
GN=Bahd1 PE=2 SV=1
Length = 772
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 29 KIVRVGDCVLMR--PSDTGKPPYVARIEKI-ESDARNNVKVRVRWYYRPEESLGGRR-QF 84
+ +RV D VL++ P T P YVA+I + E+ + + + WYYRPE GGR
Sbjct: 616 ETIRVRDTVLLKSGPRKTSTP-YVAKISALWENPESGELMMSLLWYYRPEHLQGGRSPSM 674
Query: 85 HG--AKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKL 119
H E+F S H D S IE KC V +F Y +
Sbjct: 675 HEPLQNEVFASRHQDQNSVACIEEKCYVLTFAEYCRF 711
>sp|Q8TBE0|BAHD1_HUMAN Bromo adjacent homology domain-containing 1 protein OS=Homo sapiens
GN=BAHD1 PE=1 SV=2
Length = 780
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 29 KIVRVGDCVLMR--PSDTGKPPYVARIEKI-ESDARNNVKVRVRWYYRPEESLGGRR-QF 84
+ +RV D VL++ P T P YVA+I + E+ + + + WYYRPE GGR
Sbjct: 624 ETIRVRDTVLLKSGPRKTSTP-YVAKISALWENPESGELMMSLLWYYRPEHLQGGRSPSM 682
Query: 85 HG--AKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKL 119
H E+F S H D S IE KC V +F Y +
Sbjct: 683 HEPLQNEVFASRHQDQNSVACIEEKCYVLTFAEYCRF 719
>sp|P53236|RSC1_YEAST Chromatin structure-remodeling complex subunit RSC1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RSC1 PE=1 SV=1
Length = 928
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
Query: 32 RVGDCVLMR-PSDTGKPPYVARIEKIESDARNNVKVRVRWYYRPEESLGGRRQFHGAKEL 90
++GD VL+ P+D KP V +I ++ S N + WY+RPE+++ + E+
Sbjct: 371 QIGDWVLLHNPNDINKP-IVGQIFRLWSTTDGNKWLNACWYFRPEQTVHRVDRLFYKNEV 429
Query: 91 FLSDHYDVQSAHTIEGKCIVHSFKNYTKLE---NVGAEDYYCRFEYKAASGGFTQ 142
+ Y I+GKC V F + + + V + C F Y + F +
Sbjct: 430 MKTGQYRDHPIQDIKGKCYVIHFTRFQRGDPSTKVNGPQFVCEFRYNESDKVFNK 484
>sp|O74964|RSC1_SCHPO Chromatin structure-remodeling complex subunit rsc1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rsc1 PE=1 SV=1
Length = 803
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 14/148 (9%)
Query: 2 AKTRPGIPTKTKTGKRDLE-SYTIRGTNKIVRVGDCVLMR-PSDTGKPPYVARIEKIESD 59
++ P +P K D++ + +I GT ++ VGD VL+R P+D+ KP V++I +I
Sbjct: 331 SRASPQLP------KNDIQPAVSIDGT--LLNVGDWVLIRNPADSSKP-IVSQIYRIWKS 381
Query: 60 ARNNVKVRVRWYYRPEESLGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKL 119
+ V V WY RPE+++ E+F + Y I G+C V Y +
Sbjct: 382 DDDINYVTVCWYLRPEQTVHRADAVFYENEVFKTSLYRDHPVSEIVGRCFVMYITRYIRG 441
Query: 120 ENVGAED---YYCRFEYKAASGGFTQTE 144
G + C Y + F++ +
Sbjct: 442 RPKGIRSTPVFVCESRYNDDTKQFSKIK 469
>sp|Q10077|SNT2_SCHPO Lid2 complex component snt2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=snt2 PE=4 SV=1
Length = 1131
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 23/135 (17%)
Query: 11 KTKTGKRDLESYTIRG-------TNKIVRVGDCVLMRPSDTGKPPYVARI---EKIESDA 60
KT+ G +LE G ++++ D VL+ G+P +ARI EK
Sbjct: 78 KTRLGIFELEPLPPNGLVCCVLPNGELIQPNDFVLVNSPFPGEPFQIARIISFEKSRPCV 137
Query: 61 RNNV--KVRVRWYYRPEESLGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFKNYTK 118
N+ VR+ WY+RP + +R + LF S H D+ + +++ KC V K+ ++
Sbjct: 138 STNLYDSVRLNWYFRPRDI---QRHLTDTRLLFASMHSDIYNIGSVQEKCTV---KHRSQ 191
Query: 119 LENVG-----AEDYY 128
+EN+ A+ YY
Sbjct: 192 IENLDEYKSQAKSYY 206
>sp|Q24K09|DNMT1_BOVIN DNA (cytosine-5)-methyltransferase 1 OS=Bos taurus GN=DNMT1 PE=2
SV=1
Length = 1611
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 28 NKIVRVGDCVLMRPSDTGKPPYVARIEKIESDARNNVKVRVRWYYRPEESLGGRRQFHGA 87
++ + VGDCV + P D+ KP Y+AR+ + D+ N W+ +++ G
Sbjct: 751 SETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQMFHAHWFCAGTDTVLG--ATSDP 808
Query: 88 KELFLSDHYDVQSAHTIEGKCIV 110
ELFL D + I K V
Sbjct: 809 LELFLVDECEDMQLSYIHSKVQV 831
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Query: 43 DTGKPPYVARIEKI----ESDARNN---VKVRVRWYYRPEESLGGRRQFHGA--KELFLS 93
D +P + RI++I +S+ R N +K+RV +YRPE + + A L+ S
Sbjct: 983 DAPEPYRIGRIKEIFCSKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWS 1042
Query: 94 DHYDVQSAHTIEGKCIVHSFKNYTK-LENV---GAEDYYCRFEYKAASGGF 140
D V ++G+C V ++ + L++ G + +Y Y A S F
Sbjct: 1043 DEEAVVDFKAVQGRCTVEYGEDLPQCLQDFSAGGPDRFYFLEAYNAKSKSF 1093
>sp|Q27746|DNMT1_PARLI DNA (cytosine-5)-methyltransferase PliMCI OS=Paracentrotus lividus
GN=DNMT PE=2 SV=1
Length = 1612
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 31 VRVGDCVLMRPSDTGKPPYVARIEKIESDARNNVKVRVRWYYRPEESLGGRRQFHGAKEL 90
+ +GDCVL+ P D KP ++AR+ + +++ + +W+ E++ G + E+
Sbjct: 745 IEIGDCVLIHPDDPTKPLFMARVIYMWQESQGEMMFHAQWFVYGSETVLG--ETSDPLEV 802
Query: 91 FLSDHYDVQSAHTIEGKCIV 110
F D ++ KC V
Sbjct: 803 FPIDECQDTYLGSVNAKCTV 822
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 11/121 (9%)
Query: 9 PTKTKTGKRDLESYTIRGTNKIVRVGDCVLMRPSDTGKPPYVARIEKIESDARNNVKVRV 68
P K DL R +++ V+ + P GK + I +S++ V++RV
Sbjct: 953 PVSKKDVDEDLYPENYRKSSEYVKGSNLECPEPFRIGK---IISIYTTKSNS--TVRLRV 1007
Query: 69 RWYYRPEESLGGRRQFHGA--KELFLSDHYDVQSAHTIEGKCIVHSFKNYTKLENVGAED 126
YRPE++ GR + A L+ S+ V ++GKC V ++ NV ++
Sbjct: 1008 NKMYRPEDTHKGRTAAYQADLNVLYWSEEEAVTELEVVQGKCSVVCAEDL----NVSTDE 1063
Query: 127 Y 127
Y
Sbjct: 1064 Y 1064
>sp|P26358|DNMT1_HUMAN DNA (cytosine-5)-methyltransferase 1 OS=Homo sapiens GN=DNMT1 PE=1
SV=2
Length = 1616
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 29 KIVRVGDCVLMRPSDTGKPPYVARIEKIESDARNNVKVRVRWYYRPEESLGGRRQFHGAK 88
+ + VGDCV + P D+ KP Y+AR+ + D+ N W+ +++ G
Sbjct: 755 ETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQMFHAHWFCAGTDTVLG--ATSDPL 812
Query: 89 ELFLSDHYDVQSAHTIEGKCIV 110
ELFL D + I K V
Sbjct: 813 ELFLVDECEDMQLSYIHSKVKV 834
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
Query: 43 DTGKPPYVARIEKI----ESDARNN---VKVRVRWYYRPEESLGGRRQFHGA--KELFLS 93
D +P + RI++I +S+ R N +K+RV +YRPE + + A L+ S
Sbjct: 986 DAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWS 1045
Query: 94 DHYDVQSAHTIEGKCIVHSFKNYTKLENV----GAEDYYCRFEYKAASGGF 140
D V ++G+C V ++ + V G +Y Y A S F
Sbjct: 1046 DEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMGGPNRFYFLEAYNAKSKSF 1096
>sp|Q06488|RSC2_YEAST Chromatin structure-remodeling complex subunit RSC2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RSC2 PE=1 SV=1
Length = 889
Score = 38.1 bits (87), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 11/117 (9%)
Query: 33 VGDCVLMRPSDTGKPPYVARIEKIESDARNNVKVRVRWYYRPEESLGGRRQFHGAKELFL 92
VGD L+R + + P V +I ++ + WYYRPE+++ + E+
Sbjct: 412 VGDWALLRNQNDPQKPIVGQIFRLWKTPDGKQWLNACWYYRPEQTVHRVDRLFYKNEVMK 471
Query: 93 SDHYDVQSAHTIEGKCIVHSFKNYTKLENVGAED-------YYCRFEYKAASGGFTQ 142
+ Y + GKC V F Y + G D + C F Y + F +
Sbjct: 472 TGQYRDHLVSNLVGKCYVIHFTRYQR----GNPDMKLEGPLFVCEFRYNESDKIFNK 524
>sp|P13864|DNMT1_MOUSE DNA (cytosine-5)-methyltransferase 1 OS=Mus musculus GN=Dnmt1 PE=1
SV=5
Length = 1620
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 7 GIPTKTKTGKRDLESYTIRGTNKIVRVGDCVLMRPSDTGKPPYVARIEKIESDARNNVKV 66
G P K + + + +I +++ VGDCV + P D+ KP Y+AR+ + D +
Sbjct: 738 GQPMKIEENRTYYQKVSI--DEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDKNGQMMF 795
Query: 67 RVRWY 71
W+
Sbjct: 796 HAHWF 800
>sp|Q92072|DNMT1_CHICK DNA (cytosine-5)-methyltransferase 1 OS=Gallus gallus GN=DNMT1 PE=1
SV=1
Length = 1537
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Query: 7 GIPTKTKTGKRDLESYTIRGTNKIVRVGDCVLMRPSDTGKPPYVARIEKIESDARNNVKV 66
G P K+ GK+D + + + VGDCV + P D KP Y+AR+ + D+ +
Sbjct: 647 GEPIKSD-GKKDFYQRVCIDS-ETLEVGDCVSVSPDDPTKPLYLARVTAMWEDSSGQM-F 703
Query: 67 RVRWYYRPEESLGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIV 110
W+ +++ G ELFL D + I GK V
Sbjct: 704 HAHWFCPGSDTVLGATS--DPLELFLVDECEDMQLSYIHGKVNV 745
>sp|Q924K8|MTA3_MOUSE Metastasis-associated protein MTA3 OS=Mus musculus GN=Mta3 PE=1
SV=1
Length = 591
Score = 36.6 bits (83), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 44/108 (40%), Gaps = 28/108 (25%)
Query: 30 IVRVGDCVLMRPSDTGKPPYVARIEKIESDARNNVKVRVRWYYR---------------- 73
+ RVGD V S + P + RIE++ A NV+ +V +YR
Sbjct: 5 MYRVGDYVYFENS-SSNPYLIRRIEELNKTASGNVEAKVVCFYRRRDISNTLIMLADKHA 63
Query: 74 ---------PEESLGGRRQFHGAK--ELFLSDHYDVQSAHTIEGKCIV 110
P E+ +Q H K ELFLS Y+ A I GKC V
Sbjct: 64 KETEEESETPVEADLTEKQKHQLKHRELFLSRQYESLPATHIRGKCSV 111
>sp|Q94F88|CMT3_ARATH DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana
GN=CMT3 PE=1 SV=2
Length = 839
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 42 SDTGKPPYVARIEKIESDARNNVKVRVRWYYRPEESLGGRRQFH---GAKELFLSDHYDV 98
S GK P++ +I ++ A + RW+YRP +++ ++F K +F S+ D
Sbjct: 120 SGEGKDPFICKIIEMFEGANGKLYFTARWFYRPSDTV--MKEFEILIKKKRVFFSEIQDT 177
Query: 99 QSAHTIEGKC-IVHSFKNYTKLENVGAE---DYYCRFEY 133
+E K I+ N E + A D++C Y
Sbjct: 178 NELGLLEKKLNILMIPLNENTKETIPATENCDFFCDMNY 216
>sp|Q8WSR4|ITPR_ASTPE Inositol 1,4,5-trisphosphate receptor OS=Asterina pectinifera
GN=IP3R PE=1 SV=1
Length = 2698
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Query: 22 YTIRGTNKIVRVGDCVLMRPSDTGKPPYVARIEKIESDA---RNNVKVRVRW----YYRP 74
Y +R V VGD V++ P + G+P + + E I++ N+V W +
Sbjct: 167 YKLRSAGDNVVVGDKVVLNPVNAGQPLHPSNYELIDNPGCKEVNSVNCNTCWKVSLFMEH 226
Query: 75 EESLGGR------RQFHGAKELFLS-DHYDVQS 100
+E+L G R FH +E FL+ D Y +S
Sbjct: 227 KENLDGLKGGDVVRLFHAEQEKFLTCDEYKKKS 259
>sp|Q7Y1I7|DNM1A_ORYSJ DNA (cytosine-5)-methyltransferase 1A OS=Oryza sativa subsp. japonica
GN=MET1A PE=2 SV=1
Length = 1527
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 63 NVKVRVRWYYRPEESLGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFKNY--TKLE 120
+ KV+VR +YRP++ + +E++ S+ IEGKC V + + L
Sbjct: 966 STKVKVRRFYRPDDISSTKAYSSDIREVYYSEDIISVPVVMIEGKCEVRLKDDLPNSDLP 1025
Query: 121 NVGAEDYYCRFEYKAASGGFTQTELLCTANVRCL-ITRMI 159
V + C + Y A+G Q NVR + +TR +
Sbjct: 1026 AVVEHVFCCEYLYDPANGALKQ----LPPNVRLVTLTRKV 1061
>sp|B1Q3J6|DNM1B_ORYSJ DNA (cytosine-5)-methyltransferase 1B OS=Oryza sativa subsp. japonica
GN=MET1B PE=2 SV=1
Length = 1529
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 8/85 (9%)
Query: 63 NVKVRVRWYYRPEESLGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKLENV 122
+ K+ VR +YRP++ + +E++ S++ IEGKC V K + N
Sbjct: 966 STKISVRRFYRPDDISSAKAYVSDIREVYYSENIVKVPVDMIEGKCEV---KKKIDISNS 1022
Query: 123 GA-----EDYYCRFEYKAASGGFTQ 142
+++C Y A+G Q
Sbjct: 1023 DVPVMVEHEFFCEHFYDPATGALKQ 1047
>sp|Q9Z330|DNMT1_RAT DNA (cytosine-5)-methyltransferase 1 OS=Rattus norvegicus GN=Dnmt1
PE=1 SV=2
Length = 1622
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 29 KIVRVGDCVLMRPSDTGKPPYVARIEKIESDARNNVKVRVRWY 71
+ + VGDCV + P D KP Y+AR+ + D +N W+
Sbjct: 759 ETLEVGDCVSVIPDDPSKPLYLARVTALWED-KNGQMFHAHWF 800
>sp|P34881|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1 OS=Arabidopsis thaliana GN=DMT1
PE=1 SV=1
Length = 1534
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 66 VRVRWYYRPEESLGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKLENVGAE 125
V+VR +YRPE+ + +EL+ S V +EGKC V +
Sbjct: 969 VKVRRFYRPEDVSAEKAYASDIQELYFSQDTVVLPPGALEGKCEVRKKSDMPLSREYPIS 1028
Query: 126 D--YYCRFEYKAASGGFTQ 142
D ++C + + G Q
Sbjct: 1029 DHIFFCDLFFDTSKGSLKQ 1047
>sp|Q9R190|MTA2_MOUSE Metastasis-associated protein MTA2 OS=Mus musculus GN=Mta2 PE=1
SV=1
Length = 668
Score = 33.1 bits (74), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 51/126 (40%), Gaps = 26/126 (20%)
Query: 30 IVRVGDCVLMRPSDTGKPPYVARIEKIESDARNNVKVRVRWYYR---------------- 73
+ RVGD V S + P V RIE++ A NV+ +V +R
Sbjct: 5 MYRVGDYVYFENSSSN-PYLVRRIEELNKTANGNVEAKVVCLFRRRDISSSLNSLADSNA 63
Query: 74 ---PEESLG---GRRQFHGAK--ELFLSDHYDVQSAHTIEGKCIVHSFKNYTKLENVGAE 125
EES +Q H K ELFLS ++ A I GKC V + N T + N +
Sbjct: 64 REFEEESKQPGVSEQQRHQLKHRELFLSRQFESLPATHIRGKCSV-TLLNETDILNQYLD 122
Query: 126 DYYCRF 131
C F
Sbjct: 123 KEDCFF 128
>sp|Q14571|ITPR2_HUMAN Inositol 1,4,5-trisphosphate receptor type 2 OS=Homo sapiens
GN=ITPR2 PE=1 SV=2
Length = 2701
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 15/91 (16%)
Query: 22 YTIRGTNKIVRVGDCVLMRPSDTGKPPYVARIEKIESDA---RNNVKVRVRW-------- 70
+ +R + VGD V++ P + G+P + + IE +++ N V W
Sbjct: 167 WKLRSEGDNIVVGDKVVLMPVNAGQPLHASNIELLDNPGCKEVNAVNCNTSWKITLFMKY 226
Query: 71 -YYRPEESLGGR--RQFHGAKELFLS-DHYD 97
YR + GG R FH +E FL+ D Y+
Sbjct: 227 SSYREDVLKGGDVVRLFHAEQEKFLTCDEYE 257
>sp|O94776|MTA2_HUMAN Metastasis-associated protein MTA2 OS=Homo sapiens GN=MTA2 PE=1
SV=1
Length = 668
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 51/126 (40%), Gaps = 26/126 (20%)
Query: 30 IVRVGDCVLMRPSDTGKPPYVARIEKIESDARNNVKVRVRWYYR---------------- 73
+ RVGD V S + P V RIE++ A NV+ +V +R
Sbjct: 5 MYRVGDYVYFENSSSN-PYLVRRIEELNKTANGNVEAKVVCLFRRRDISSSLNSLADSNA 63
Query: 74 ---PEESLG---GRRQFHGAK--ELFLSDHYDVQSAHTIEGKCIVHSFKNYTKLENVGAE 125
EES +Q H K ELFLS ++ A I GKC V + N T + + E
Sbjct: 64 REFEEESKQPGVSEQQRHQLKHRELFLSRQFESLPATHIRGKCSV-TLLNETDILSQYLE 122
Query: 126 DYYCRF 131
C F
Sbjct: 123 KEDCFF 128
>sp|Q9Z329|ITPR2_MOUSE Inositol 1,4,5-trisphosphate receptor type 2 OS=Mus musculus
GN=Itpr2 PE=1 SV=4
Length = 2701
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 15/91 (16%)
Query: 22 YTIRGTNKIVRVGDCVLMRPSDTGKPPYVARIEKIESDA---RNNVKVRVRW-------- 70
+ +R + VGD V++ P + G+P + + +E +++ N V W
Sbjct: 167 WKLRSEGDNIVVGDKVVLMPVNAGQPLHASNVELLDNPGCKEVNAVNCNTSWKITLFMKF 226
Query: 71 -YYRPEESLGGR--RQFHGAKELFLS-DHYD 97
YR + GG R FH +E FL+ D Y+
Sbjct: 227 SSYREDVLKGGDVVRLFHAEQEKFLTCDDYE 257
>sp|P29995|ITPR2_RAT Inositol 1,4,5-trisphosphate receptor type 2 OS=Rattus norvegicus
GN=Itpr2 PE=1 SV=1
Length = 2701
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 15/91 (16%)
Query: 22 YTIRGTNKIVRVGDCVLMRPSDTGKPPYVARIEKIESDA---RNNVKVRVRW-------- 70
+ +R + VGD V++ P + G+P + + +E +++ N V W
Sbjct: 167 WKLRSEGDNIVVGDKVVLMPVNAGQPLHASNVELLDNPGCKEVNAVNCNTSWKITLFMKF 226
Query: 71 -YYRPEESLGGR--RQFHGAKELFLS-DHYD 97
YR + GG R FH +E FL+ D Y+
Sbjct: 227 SSYREDVLKGGDVVRLFHAEQEKFLTCDDYE 257
>sp|P11881|ITPR1_MOUSE Inositol 1,4,5-trisphosphate receptor type 1 OS=Mus musculus
GN=Itpr1 PE=1 SV=2
Length = 2749
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 14/86 (16%)
Query: 22 YTIRGTNKIVRVGDCVLMRPSDTGKPPYVARIEKIESDARNNVK-----------VRVRW 70
Y +R V +GD V++ P + G+P + + + +++ N V + ++W
Sbjct: 167 YKLRSIGDSVVIGDKVVLNPVNAGQPLHASSHQLVDNPGCNEVNSVNCNTSWKIVLFMKW 226
Query: 71 YYRPEESLGG---RRQFHGAKELFLS 93
++ L G R FH +E FL+
Sbjct: 227 SDNKDDILKGGDVVRLFHAEQEKFLT 252
>sp|Q9TU34|ITPR1_BOVIN Inositol 1,4,5-trisphosphate receptor type 1 OS=Bos taurus GN=ITPR1
PE=1 SV=1
Length = 2709
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 14/86 (16%)
Query: 22 YTIRGTNKIVRVGDCVLMRPSDTGKPPYVARIEKIESDARNNVK-----------VRVRW 70
Y +R V +GD V++ P + G+P + + + +++ N V + ++W
Sbjct: 167 YKLRSIGDSVVIGDKVVLNPVNAGQPLHASSHQLVDNPGCNEVNSVNCNTSWKIVLFMKW 226
Query: 71 YYRPEESLGG---RRQFHGAKELFLS 93
++ L G R FH +E FL+
Sbjct: 227 SDNKDDILKGGDVVRLFHAEQEKFLT 252
>sp|Q14643|ITPR1_HUMAN Inositol 1,4,5-trisphosphate receptor type 1 OS=Homo sapiens
GN=ITPR1 PE=1 SV=2
Length = 2758
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 14/86 (16%)
Query: 22 YTIRGTNKIVRVGDCVLMRPSDTGKPPYVARIEKIESDARNNVK-----------VRVRW 70
Y +R V +GD V++ P + G+P + + + +++ N V + ++W
Sbjct: 167 YKLRSIGDSVVIGDKVVLNPVNAGQPLHASSHQLVDNPGCNEVNSVNCNTSWKIVLFMKW 226
Query: 71 YYRPEESLGG---RRQFHGAKELFLS 93
++ L G R FH +E FL+
Sbjct: 227 SDNKDDILKGGDVVRLFHAEQEKFLT 252
>sp|P53127|SNT2_YEAST SANT domain-containing protein 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SNT2 PE=1 SV=1
Length = 1403
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 20/123 (16%)
Query: 18 DLESYTIRGTNKIV-RVGDCVLMRPSDTGKPPYVARIEKIES--DARNNV---------- 64
DL+ ++ T ++ D + M G+P YV R+ S + N +
Sbjct: 109 DLKKMSLFNTESVLLSANDTIYMISEPAGEPYYVGRVVNFVSKPEFSNTIHEAIKTTSVF 168
Query: 65 -----KVRVRWYYRPEESLGGRRQFHGAKELFLSDHYDVQSAHTIEGKC-IVHSFKNYTK 118
+VR+ W+YRP + F+ + ++ S H D+ + GKC I H + +
Sbjct: 169 PAKFFQVRMNWFYRPRDIQEHVNTFN-PRLVYASLHQDICPISSYRGKCSIFHKDEVFDV 227
Query: 119 LEN 121
L N
Sbjct: 228 LPN 230
>sp|P29994|ITPR1_RAT Inositol 1,4,5-trisphosphate receptor type 1 OS=Rattus norvegicus
GN=Itpr1 PE=1 SV=2
Length = 2750
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 14/86 (16%)
Query: 22 YTIRGTNKIVRVGDCVLMRPSDTGKPPYVARIEKIESDARNNVK-----------VRVRW 70
Y +R V +GD V++ P + G+P + + + +++ N V + ++W
Sbjct: 167 YKLRSIGDSVVIGDKVVLNPVNAGQPLHASSHQLVDNPGCNEVNSVNCNTSWKIVLFMKW 226
Query: 71 YYRPEESLGG---RRQFHGAKELFLS 93
++ L G R FH +E FL+
Sbjct: 227 SDNKDDILKGGDVVRLFHAEQEKFLT 252
>sp|O49139|CMT1_ARATH Putative DNA (cytosine-5)-methyltransferase CMT1 OS=Arabidopsis
thaliana GN=CMT1 PE=5 SV=2
Length = 791
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 21/158 (13%)
Query: 3 KTRPGIPTK---TKTGKRDLESYTIRGTNKIVR-VGDCVLMRPSD-------TGKPPYVA 51
KT+ PTK K GK++ E + + + D VL+ +D GK ++A
Sbjct: 41 KTKLQAPTKKPANKGGKKEDEEIIKQAKCHFDKALVDGVLINLNDDVYVTGLPGKLKFIA 100
Query: 52 R-IEKIESDARNNVK-VRVRWYYRPEESLGGR-RQFHGAKELFLSDHYDVQSAHTIEGKC 108
+ IE E+D + V R RWYYRPE++L R K +FLS+ + I K
Sbjct: 101 KVIELFEAD--DGVPYCRFRWYYRPEDTLIERFSHLVQPKRVFLSNDENDNPLTCIWSKV 158
Query: 109 IVHSF---KNYTKLEN--VGAEDYYCRFEYKAASGGFT 141
+ K +++E + DYY +Y+ FT
Sbjct: 159 NIAKVPLPKITSRIEQRVIPPCDYYYDMKYEVPYLNFT 196
>sp|Q9C8N5|STOP1_ARATH Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana
GN=STOP1 PE=2 SV=1
Length = 499
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 44 TGKP-----PYVARIEKIESDARNNVKVRVRWYYRPEESLGGRRQFHGAKELFLSDHYDV 98
TG+P PYV + S ++NN R + P+ L R+ H +E + D DV
Sbjct: 158 TGQPGSAVFPYVREANNVASQSQNNNNCGAREFDLPKPVLVDEREGHVVEEHEMKDEDDV 217
Query: 99 QSAHTI 104
+ +
Sbjct: 218 EEGENL 223
>sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase A
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hcs1 PE=3 SV=1
Length = 660
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 26 GTNKIVRVGDCVLMRPSDTGKPPYVARIEKIESDARNNVKVRVRWYYRPEE 76
G NK++ GD + + P+ K PY++ E++ + VK + YR E
Sbjct: 405 GMNKVILAGDHMQLSPNVQSKRPYISMFERLVKSQGDLVKCFLNIQYRMHE 455
>sp|Q0DXS3|RDR1_ORYSJ Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp.
japonica GN=RDR1 PE=2 SV=2
Length = 740
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 92 LSDHYDVQSAHTIEGKCIVHSFKNYTKLENVGAEDYYCRFEYKAASGGFTQTEL 145
L DHY ++S I CI+ KN+TK + A R K A F++ L
Sbjct: 612 LMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRLAVRSLRKEARSRFSEMSL 665
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,376,645
Number of Sequences: 539616
Number of extensions: 2703530
Number of successful extensions: 4614
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 4572
Number of HSP's gapped (non-prelim): 50
length of query: 177
length of database: 191,569,459
effective HSP length: 110
effective length of query: 67
effective length of database: 132,211,699
effective search space: 8858183833
effective search space used: 8858183833
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)