Query 030413
Match_columns 177
No_of_seqs 114 out of 906
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 21:43:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030413.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030413hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w4s_A Polybromo, polybromo 1 100.0 3.7E-36 1.3E-40 230.8 11.1 137 7-145 5-144 (174)
2 3swr_A DNA (cytosine-5)-methyl 100.0 2.1E-28 7.3E-33 227.4 16.8 147 7-159 137-299 (1002)
3 3av4_A DNA (cytosine-5)-methyl 99.9 3.6E-27 1.2E-31 223.7 16.2 135 7-145 448-595 (1330)
4 4dov_A ORC1, origin recognitio 99.9 5.4E-24 1.8E-28 159.1 17.5 126 16-144 21-161 (163)
5 3swr_A DNA (cytosine-5)-methyl 99.9 7.9E-23 2.7E-27 190.2 14.9 131 13-145 319-503 (1002)
6 4ft4_B DNA (cytosine-5)-methyl 99.9 8.9E-22 3E-26 180.1 10.9 129 14-145 43-182 (784)
7 3av4_A DNA (cytosine-5)-methyl 99.8 3.2E-21 1.1E-25 183.2 12.0 131 13-145 631-814 (1330)
8 2fl7_A Regulatory protein SIR3 99.7 3.8E-16 1.3E-20 123.1 10.8 121 22-143 44-190 (232)
9 1m4z_A Origin recognition comp 99.7 4.2E-16 1.4E-20 123.2 10.3 121 22-143 44-190 (238)
10 3o7a_A PHD finger protein 13 v 97.9 2.4E-06 8.3E-11 52.0 1.1 26 145-172 5-38 (52)
11 1wep_A PHF8; structural genomi 97.9 2.3E-06 7.8E-11 56.7 1.0 35 137-173 3-48 (79)
12 1wem_A Death associated transc 97.8 3.8E-06 1.3E-10 55.1 0.5 28 144-173 16-51 (76)
13 3kqi_A GRC5, PHD finger protei 97.8 4.2E-06 1.4E-10 54.8 0.2 30 142-173 8-46 (75)
14 3o70_A PHD finger protein 13; 97.7 5.6E-06 1.9E-10 53.3 0.7 26 145-172 20-53 (68)
15 1we9_A PHD finger family prote 97.7 6.2E-06 2.1E-10 52.2 0.9 26 145-172 7-42 (64)
16 2vpb_A Hpygo1, pygopus homolog 97.7 7E-06 2.4E-10 52.4 0.4 21 151-173 25-46 (65)
17 2kgg_A Histone demethylase jar 97.7 9.4E-06 3.2E-10 49.4 0.9 21 151-173 19-40 (52)
18 1wee_A PHD finger family prote 97.6 1.1E-05 3.7E-10 52.4 0.6 26 145-172 17-51 (72)
19 2rsd_A E3 SUMO-protein ligase 97.6 1.1E-05 3.9E-10 51.7 0.6 26 145-172 11-46 (68)
20 3c6w_A P28ING5, inhibitor of g 97.6 1.1E-05 3.7E-10 50.5 0.4 26 145-172 10-45 (59)
21 1wew_A DNA-binding family prot 97.6 8.8E-06 3E-10 53.7 -0.2 28 144-173 16-53 (78)
22 2g6q_A Inhibitor of growth pro 97.6 1.2E-05 4.3E-10 50.7 0.5 27 144-172 11-47 (62)
23 1weu_A Inhibitor of growth fam 97.6 1.8E-05 6.1E-10 53.8 1.1 26 145-172 37-72 (91)
24 1wen_A Inhibitor of growth fam 97.5 1.6E-05 5.5E-10 51.5 0.6 26 145-172 17-52 (71)
25 2lv9_A Histone-lysine N-methyl 97.5 2.9E-05 9.8E-10 53.4 1.5 34 136-171 20-61 (98)
26 2vnf_A ING 4, P29ING4, inhibit 97.5 2E-05 6.9E-10 49.3 0.4 27 144-172 10-46 (60)
27 2jmi_A Protein YNG1, ING1 homo 97.4 3.4E-05 1.2E-09 52.2 1.0 27 144-172 26-62 (90)
28 2k16_A Transcription initiatio 97.3 2.7E-05 9.4E-10 50.7 -0.2 25 146-172 20-53 (75)
29 1x4i_A Inhibitor of growth pro 97.3 3.6E-05 1.2E-09 49.7 0.3 27 144-172 6-42 (70)
30 2xb1_A Pygopus homolog 2, B-ce 97.1 0.00015 5E-09 50.5 1.4 20 151-172 20-40 (105)
31 3kv5_D JMJC domain-containing 96.6 0.0004 1.4E-08 60.4 0.4 27 145-173 38-73 (488)
32 3pur_A Lysine-specific demethy 95.1 0.0057 2E-07 53.4 1.1 20 151-172 59-78 (528)
33 1xwh_A Autoimmune regulator; P 95.0 0.0075 2.6E-07 38.0 1.2 18 151-170 21-38 (66)
34 1f62_A Transcription factor WS 94.8 0.0046 1.6E-07 36.9 -0.2 18 151-170 16-33 (51)
35 2puy_A PHD finger protein 21A; 93.9 0.014 4.7E-07 36.0 0.7 18 151-170 18-35 (60)
36 2yql_A PHD finger protein 21A; 93.9 0.013 4.3E-07 35.7 0.4 18 151-170 22-39 (56)
37 2l5u_A Chromodomain-helicase-D 93.7 0.011 3.7E-07 36.8 -0.2 23 146-170 13-41 (61)
38 3asl_A E3 ubiquitin-protein li 93.6 0.019 6.6E-07 36.6 0.9 18 151-170 34-51 (70)
39 2lri_C Autoimmune regulator; Z 92.8 0.018 6.2E-07 36.4 -0.2 18 151-170 25-42 (66)
40 2e6r_A Jumonji/ARID domain-con 92.7 0.026 8.9E-07 38.0 0.5 18 151-170 32-49 (92)
41 2ku3_A Bromodomain-containing 92.3 0.02 7E-07 36.7 -0.4 19 151-171 34-52 (71)
42 3shb_A E3 ubiquitin-protein li 92.2 0.037 1.3E-06 36.0 0.8 18 151-170 42-59 (77)
43 4gne_A Histone-lysine N-methyl 92.1 0.031 1.1E-06 38.7 0.3 19 151-171 28-48 (107)
44 2yt5_A Metal-response element- 92.0 0.034 1.1E-06 34.8 0.4 19 151-171 24-42 (66)
45 1mm2_A MI2-beta; PHD, zinc fin 92.0 0.043 1.5E-06 34.0 0.8 18 151-170 22-39 (61)
46 2e6s_A E3 ubiquitin-protein li 91.3 0.047 1.6E-06 35.5 0.4 18 151-170 42-59 (77)
47 2l43_A N-teminal domain from h 90.8 0.039 1.3E-06 36.8 -0.3 19 151-171 43-61 (88)
48 3ask_A E3 ubiquitin-protein li 87.6 0.12 4.1E-06 40.4 0.3 45 30-75 2-52 (226)
49 2kwj_A Zinc finger protein DPF 84.8 0.21 7.1E-06 34.7 0.3 18 151-170 74-91 (114)
50 1wev_A Riken cDNA 1110020M19; 84.5 0.22 7.5E-06 33.0 0.3 20 151-172 34-53 (88)
51 2ysm_A Myeloid/lymphoid or mix 83.0 0.3 1E-05 33.5 0.5 18 151-170 70-87 (111)
52 4bbq_A Lysine-specific demethy 82.3 0.33 1.1E-05 33.5 0.5 19 151-171 76-94 (117)
53 3v43_A Histone acetyltransfera 80.4 0.45 1.5E-05 32.8 0.6 18 151-170 78-95 (112)
54 1fp0_A KAP-1 corepressor; PHD 76.4 0.69 2.4E-05 30.7 0.6 18 151-170 38-55 (88)
55 2a7y_A Hypothetical protein RV 74.8 2.7 9.2E-05 27.4 3.1 41 32-73 7-47 (83)
56 3v43_A Histone acetyltransfera 72.4 0.74 2.5E-05 31.7 -0.0 18 151-170 27-44 (112)
57 4hcz_A PHD finger protein 1; p 70.8 3.8 0.00013 24.9 2.9 28 30-59 3-30 (58)
58 2ysm_A Myeloid/lymphoid or mix 70.6 1 3.5E-05 30.7 0.3 20 151-172 23-42 (111)
59 3zzs_A Transcription attenuati 69.9 10 0.00035 23.3 4.6 48 66-113 13-60 (65)
60 2m0o_A PHD finger protein 1; t 68.1 3.9 0.00013 26.3 2.6 29 29-59 25-53 (79)
61 2eqj_A Metal-response element- 67.9 6.5 0.00022 24.5 3.6 28 30-59 13-40 (66)
62 2lq6_A Bromodomain-containing 67.6 1.1 3.9E-05 29.4 0.1 20 151-170 32-51 (87)
63 2kwj_A Zinc finger protein DPF 67.5 1.3 4.4E-05 30.5 0.3 18 151-170 24-41 (114)
64 1gtf_A Trp RNA-binding attenua 63.5 14 0.00049 23.0 4.5 48 66-113 17-64 (74)
65 3zte_A Tryptophan operon RNA-b 62.1 15 0.00051 23.3 4.5 48 66-113 21-68 (78)
66 2l8d_A Lamin-B receptor; DNA b 54.4 8.6 0.00029 23.9 2.3 29 29-58 8-36 (66)
67 2e5p_A Protein PHF1, PHD finge 53.8 20 0.00068 22.3 3.9 29 29-59 8-36 (68)
68 2xk0_A Polycomb protein PCL; t 52.4 11 0.00039 23.6 2.7 26 30-57 15-40 (69)
69 2dig_A Lamin-B receptor; tudor 51.6 11 0.00039 23.4 2.6 29 29-58 11-39 (68)
70 3qby_A Hepatoma-derived growth 49.5 9.7 0.00033 25.1 2.2 26 30-57 5-30 (94)
71 2e6z_A Transcription elongatio 49.0 8.5 0.00029 23.1 1.7 40 29-73 6-45 (59)
72 4fu6_A PC4 and SFRS1-interacti 48.5 10 0.00034 27.3 2.4 42 29-72 21-64 (153)
73 2gfu_A DNA mismatch repair pro 48.4 13 0.00045 26.0 2.9 43 29-73 21-69 (134)
74 3llr_A DNA (cytosine-5)-methyl 47.4 13 0.00043 27.1 2.7 45 28-74 14-61 (154)
75 1nz9_A Transcription antitermi 45.9 16 0.00055 21.5 2.7 44 30-76 4-47 (58)
76 1ri0_A Hepatoma-derived growth 44.1 7.2 0.00024 26.6 0.9 42 28-71 17-60 (110)
77 3bcw_A Uncharacterized protein 44.0 34 0.0012 23.4 4.5 20 25-44 85-104 (123)
78 1o5u_A Novel thermotoga mariti 43.5 30 0.001 22.7 4.0 22 22-43 62-84 (101)
79 2e5q_A PHD finger protein 19; 43.0 13 0.00044 22.8 1.8 29 29-59 6-34 (63)
80 3p8d_A Medulloblastoma antigen 41.0 22 0.00074 22.1 2.7 36 30-71 6-41 (67)
81 2e61_A Zinc finger CW-type PWW 39.2 6.9 0.00023 24.6 0.2 11 151-163 19-31 (69)
82 1khc_A DNA cytosine-5 methyltr 38.4 11 0.00039 27.0 1.3 43 28-72 9-54 (147)
83 4axo_A EUTQ, ethanolamine util 37.7 31 0.0011 24.8 3.5 44 22-78 97-140 (151)
84 2l7p_A Histone-lysine N-methyl 37.6 7.6 0.00026 26.3 0.2 11 151-163 29-39 (100)
85 3lwc_A Uncharacterized protein 37.3 28 0.00097 23.5 3.2 22 22-43 72-93 (119)
86 2daq_A WHSC1L1 protein, isofor 36.6 14 0.00047 24.9 1.4 30 26-57 4-33 (110)
87 4a4f_A SurviVal of motor neuro 36.2 45 0.0016 20.0 3.7 30 29-59 7-36 (64)
88 2pyt_A Ethanolamine utilizatio 35.8 35 0.0012 23.6 3.5 22 22-43 88-109 (133)
89 2opk_A Hypothetical protein; p 32.0 28 0.00095 23.1 2.4 22 22-43 66-89 (112)
90 2ro0_A Histone acetyltransfera 31.4 47 0.0016 21.8 3.3 28 30-60 23-50 (92)
91 1y9q_A Transcriptional regulat 31.2 1.3E+02 0.0045 21.4 6.3 46 23-80 140-185 (192)
92 2ozj_A Cupin 2, conserved barr 31.1 45 0.0016 21.5 3.4 22 23-44 72-93 (114)
93 2f5k_A MORF-related gene 15 is 30.7 84 0.0029 21.0 4.6 27 30-59 22-48 (102)
94 1wgs_A MYST histone acetyltran 30.4 53 0.0018 23.0 3.7 33 29-63 11-44 (133)
95 3p8b_B Transcription antitermi 30.1 37 0.0013 24.0 2.9 44 29-75 90-133 (152)
96 2rnz_A Histone acetyltransfera 29.9 56 0.0019 21.6 3.5 28 30-60 25-52 (94)
97 1uw0_A DNA ligase III; DNA rep 29.4 9.8 0.00033 26.3 -0.3 11 159-169 48-58 (117)
98 2dmj_A Poly (ADP-ribose) polym 29.3 11 0.00038 25.5 -0.1 11 159-169 56-66 (106)
99 1mhn_A SurviVal motor neuron p 28.8 90 0.0031 18.2 4.4 28 30-58 3-30 (59)
100 2vpv_A Protein MIF2, MIF2P; nu 27.8 55 0.0019 23.8 3.5 22 22-43 123-144 (166)
101 2l89_A PWWP domain-containing 27.6 28 0.00096 23.4 1.8 42 29-72 4-52 (108)
102 3oa6_A MALE-specific lethal 3 26.7 1E+02 0.0034 21.0 4.4 32 29-60 18-51 (110)
103 1v9x_A Poly (ADP-ribose) polym 26.5 11 0.00036 26.0 -0.6 11 159-169 51-61 (114)
104 1v70_A Probable antibiotics sy 26.4 59 0.002 20.1 3.2 21 23-43 63-83 (105)
105 3m9q_A Protein MALE-specific l 26.1 1E+02 0.0035 20.6 4.3 37 24-60 13-51 (101)
106 2lbm_A Transcriptional regulat 25.4 11 0.00037 27.1 -0.7 19 151-171 76-94 (142)
107 1yhf_A Hypothetical protein SP 25.1 72 0.0025 20.4 3.5 21 23-43 74-94 (115)
108 3kgz_A Cupin 2 conserved barre 24.5 69 0.0024 22.6 3.5 22 22-43 77-98 (156)
109 2pfw_A Cupin 2, conserved barr 24.2 71 0.0024 20.5 3.3 21 23-43 68-88 (116)
110 3qii_A PHD finger protein 20; 24.1 59 0.002 21.1 2.7 37 29-71 20-56 (85)
111 2cs2_A Poly [ADP-ribose] polym 24.0 14 0.00048 26.2 -0.4 11 159-169 60-70 (134)
112 2lcc_A AT-rich interactive dom 23.9 46 0.0016 21.0 2.1 30 30-59 5-35 (76)
113 2equ_A PHD finger protein 20-l 23.6 58 0.002 20.4 2.6 28 29-58 8-35 (74)
114 1vq8_T 50S ribosomal protein L 23.6 88 0.003 21.6 3.7 29 29-59 41-69 (120)
115 3fjs_A Uncharacterized protein 23.6 55 0.0019 21.5 2.7 22 22-43 69-90 (114)
116 4h7l_A Uncharacterized protein 23.5 41 0.0014 24.4 2.1 21 23-43 82-102 (157)
117 3odc_A Poly [ADP-ribose] polym 23.3 15 0.0005 25.2 -0.4 12 159-170 52-63 (111)
118 4he6_A Peptidase family U32; u 23.2 1.3E+02 0.0045 18.9 4.4 37 20-62 22-58 (89)
119 2i45_A Hypothetical protein; n 22.9 59 0.002 20.7 2.7 22 22-43 61-83 (107)
120 2do3_A Transcription elongatio 22.8 61 0.0021 20.2 2.5 29 29-59 16-44 (69)
121 1e0b_A SWI6 protein; chromatin 22.8 1.4E+02 0.0048 18.3 4.2 25 47-71 10-34 (68)
122 3j21_U 50S ribosomal protein L 22.7 1E+02 0.0036 21.2 4.0 29 29-59 44-72 (121)
123 3cew_A Uncharacterized cupin p 22.6 72 0.0025 20.9 3.2 21 23-43 62-82 (125)
124 2i0n_A Class VII unconventiona 22.3 27 0.00092 21.7 0.8 25 28-52 26-50 (80)
125 3od8_A Poly [ADP-ribose] polym 22.2 16 0.00054 25.3 -0.4 11 159-169 69-79 (116)
126 3h8u_A Uncharacterized conserv 22.1 67 0.0023 21.0 2.9 19 25-43 77-95 (125)
127 4hae_A CDY-like 2, chromodomai 22.1 1.6E+02 0.0053 18.6 5.1 30 45-74 21-50 (81)
128 2gu9_A Tetracenomycin polyketi 21.9 63 0.0022 20.4 2.7 20 24-43 59-78 (113)
129 2rsn_A Chromo domain-containin 21.8 1.4E+02 0.0048 18.5 4.2 30 46-75 20-49 (75)
130 3m9p_A MALE-specific lethal 3 21.7 1.6E+02 0.0054 20.0 4.6 35 26-60 15-51 (110)
131 2lqk_A Transcriptional regulat 26.7 20 0.00069 22.2 0.0 25 30-60 6-30 (70)
132 2qqr_A JMJC domain-containing 21.1 66 0.0023 22.2 2.7 28 30-59 5-32 (118)
133 2oqk_A Putative translation in 20.9 60 0.002 22.2 2.4 10 33-42 73-82 (117)
134 1o4t_A Putative oxalate decarb 20.8 76 0.0026 21.3 3.0 20 24-43 93-112 (133)
135 3d82_A Cupin 2, conserved barr 20.6 68 0.0023 19.9 2.6 21 23-43 64-84 (102)
136 2b8m_A Hypothetical protein MJ 20.3 85 0.0029 20.2 3.1 21 23-43 61-82 (117)
137 4i4a_A Similar to unknown prot 20.2 1.9E+02 0.0064 18.7 6.0 21 23-43 68-88 (128)
138 3v2d_Y 50S ribosomal protein L 20.1 80 0.0027 21.4 2.9 29 30-60 6-34 (110)
No 1
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=100.00 E-value=3.7e-36 Score=230.81 Aligned_cols=137 Identities=26% Similarity=0.454 Sum_probs=106.1
Q ss_pred CCCCCCCCCceeeeEEEEcCceeeEEeCCEEEEccCCCCCCCeEEEEeEEEeCCCCcEEEEEEEEeeccccCCcccccCC
Q 030413 7 GIPTKTKTGKRDLESYTIRGTNKIVRVGDCVLMRPSDTGKPPYVARIEKIESDARNNVKVRVRWYYRPEESLGGRRQFHG 86 (177)
Q Consensus 7 ~~~~k~~~~~~~y~~~~~~g~~~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~g~~~v~v~Wfyrp~e~~~~~~~~~~ 86 (177)
|.+.+...++.+|++++++|. +|++||+|||.+++++++++||+|++||++.+|+++++|+|||||+||.++....+.
T Consensus 5 g~~~~~~~~r~~y~~~~~~g~--~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~~~g~~~v~v~WfyRPeet~~~~~~~~~ 82 (174)
T 1w4s_A 5 GSAGLSSLHRTYSQDCSFKNS--MYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFL 82 (174)
T ss_dssp -----------------------CCCTTCEEEECCSSTTSCCEEEEEEEEEECTTCCEEEEEEEEECGGGSCCCTTCEEE
T ss_pred CCccccCCCcEEeEEEEECCE--EEECCCEEEEeCCCCCCCCEEEEEEEEEEcCCCCEEEEEEEecCHHHcccccCCcCC
Confidence 566677778999999999986 999999999999886678999999999999999999999999999999976544456
Q ss_pred CCeEEEeCCCcccccceEEeeeEEEeeecccccCCC---CCceEEEEeEeecCCCceeeCcc
Q 030413 87 AKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKLENV---GAEDYYCRFEYKAASGGFTQTEL 145 (177)
Q Consensus 87 ~~ELf~S~~~d~i~~~~I~gkc~V~~~~~~~~~~~~---~~~~Ffcr~~yd~~~~~f~~~~~ 145 (177)
+||||+|++.+++|+++|+|||.|+..++|.++.+. ..++|||++.||+.+++|.+++.
T Consensus 83 ~~EvF~S~~~d~~~~~~I~gkC~V~~~~~~~~~~p~~~~~~dvF~c~~~Yd~~~~~f~~i~~ 144 (174)
T 1w4s_A 83 EKEVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVYVCESRYSAKTKSFKKIKL 144 (174)
T ss_dssp TTEEEEEEEEEEEEGGGEEEEEEEEEHHHHTTEEETTCCGGGEEEEEEEEETTTTEEEECSS
T ss_pred CCeeEEeCCcceecHHHeeeeEEEEECchhhhcCcCCCCCCCEEEEeEEEccccCeEccCcc
Confidence 999999999999999999999999999999887542 35889999999999999999886
No 2
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.96 E-value=2.1e-28 Score=227.41 Aligned_cols=147 Identities=22% Similarity=0.340 Sum_probs=124.9
Q ss_pred CCCCCCCCCceeeeEEEEcCceeeEEeCCEEEEccCCCCCCCeEEEEeEEEeCCCCcEEEEEEEEeeccccCCcccccCC
Q 030413 7 GIPTKTKTGKRDLESYTIRGTNKIVRVGDCVLMRPSDTGKPPYVARIEKIESDARNNVKVRVRWYYRPEESLGGRRQFHG 86 (177)
Q Consensus 7 ~~~~k~~~~~~~y~~~~~~g~~~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~g~~~v~v~Wfyrp~e~~~~~~~~~~ 86 (177)
|.+.|.+.++.+|+++.++|. +|++||+|||.+++++.++|||+|++||++.+|++|++|+|||||+||.+++. ++
T Consensus 137 G~p~k~~~~~~~Y~s~~v~g~--~i~VGD~V~v~~~d~~~ppyIarIe~m~ed~~g~k~~~v~Wf~rp~ET~lg~~--~~ 212 (1002)
T 3swr_A 137 GEAVKTDGKKSYYKKVCIDAE--TLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQMFHAHWFCAGTDTVLGAT--SD 212 (1002)
T ss_dssp SCCCCCBTTEEECSEEEETTE--EEETTCEEEECBSSTTSCCEEEEEEEEEEETTTEEEEEEEEEEEGGGSTTGGG--SC
T ss_pred CcccccccCceeeeEEEECCE--EEecCCEEEEecCCCCCCceEEEEEEEeecCCCCeEEEEEEEecchhcccccC--CC
Confidence 555578889999999999986 99999999999988777889999999999999999999999999999999987 77
Q ss_pred CCeEEEeCCCcccccceEEeeeEEEeeecccc---c---C---C---CCCceEEEEeEeecCCCceeeCccccccc----
Q 030413 87 AKELFLSDHYDVQSAHTIEGKCIVHSFKNYTK---L---E---N---VGAEDYYCRFEYKAASGGFTQTELLCTAN---- 150 (177)
Q Consensus 87 ~~ELf~S~~~d~i~~~~I~gkc~V~~~~~~~~---~---~---~---~~~~~Ffcr~~yd~~~~~f~~~~~~C~c~---- 150 (177)
++|||+|++++++|+++|.|||.|+..+.+.. . . + ...++|||+..||++++.|.+++..+.-.
T Consensus 213 ~~ElFlsd~cd~~~l~~I~gkc~V~~~~~~~~w~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F~~lp~~~~~~~~~~ 292 (1002)
T 3swr_A 213 PLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMDPESLLEGDDGKTYFYQLWYDQDYARFESPPKTQPTEDNKF 292 (1002)
T ss_dssp TTEEEEEEEEEEEEGGGEEEEECEEECCCCTTGGGCTTCCCCCSCCCCCCTSEEEEEEEETTTTEEECCCCCCCCTTCTT
T ss_pred CCceEeeccccCCcHHHhceeeEEEEccCCcchhhhcccccccccccCCCCeEEEEEEECCCCCcccCCChhhcccccCC
Confidence 99999999999999999999999998755111 1 1 1 23579999999999999999988633221
Q ss_pred cccCccchh
Q 030413 151 VRCLITRMI 159 (177)
Q Consensus 151 ~~C~~~~c~ 159 (177)
..| .+|.
T Consensus 293 ~~c--~~c~ 299 (1002)
T 3swr_A 293 KFC--VSCA 299 (1002)
T ss_dssp TCC--HHHH
T ss_pred CcC--cccc
Confidence 556 6664
No 3
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.95 E-value=3.6e-27 Score=223.72 Aligned_cols=135 Identities=21% Similarity=0.390 Sum_probs=115.5
Q ss_pred CCCCCCCCCceeeeEEEEcCceeeEEeCCEEEEccCCCCCCCeEEEEeEEEeCCCCcEEEEEEEEeeccccCCcccccCC
Q 030413 7 GIPTKTKTGKRDLESYTIRGTNKIVRVGDCVLMRPSDTGKPPYVARIEKIESDARNNVKVRVRWYYRPEESLGGRRQFHG 86 (177)
Q Consensus 7 ~~~~k~~~~~~~y~~~~~~g~~~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~g~~~v~v~Wfyrp~e~~~~~~~~~~ 86 (177)
|.+.+...++.+|+++.++|. +|++||+|||.+++++.++|||+|++||++.+|.+|++|+|||||+||.+++. ++
T Consensus 448 G~p~k~~~~~~~Y~~~~v~g~--~~~vGD~V~v~~~d~~~p~yiarIe~iwe~~dg~~~~~~~WfyRp~ETvlg~~--~~ 523 (1330)
T 3av4_A 448 GQPMKIEENRTYYQKVSIDEE--MLEVGDCVSVIPDDSSKPLYLARVTALWEDKNGQMMFHAHWFCAGTDTVLGAT--SD 523 (1330)
T ss_dssp SSCSCCC--CEEECSEEEESS--EEETTCEEEECBCCSSCCCEEEEEEEEEEETTCCEEEEEEEEEEGGGSTTGGG--SC
T ss_pred cCceeccCCceeeeEEEECCE--EEecCCEEEEeCCCCCCCCEEEEEeeeeecCCCCEEEEEEEEEchHHcccccc--cC
Confidence 334477788999999999997 99999999999987666899999999999999999999999999999999875 78
Q ss_pred CCeEEEeCCCcccccceEEeeeEEEeeec---ccccC---C-------CCCceEEEEeEeecCCCceeeCcc
Q 030413 87 AKELFLSDHYDVQSAHTIEGKCIVHSFKN---YTKLE---N-------VGAEDYYCRFEYKAASGGFTQTEL 145 (177)
Q Consensus 87 ~~ELf~S~~~d~i~~~~I~gkc~V~~~~~---~~~~~---~-------~~~~~Ffcr~~yd~~~~~f~~~~~ 145 (177)
++|||+|+++|++|+++|.|||.|++.++ |.+.. + ...++|||++.||++.++|..++.
T Consensus 524 ~rElFlS~~~d~~~l~~I~gKC~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~C~~~Yd~~~~~F~~lp~ 595 (1330)
T 3av4_A 524 PLELFLVGECENMQLSYIHSKVKVIYKAPSENWAMEGGTDPETTLPGAEDGKTYFFQLWYNQEYARFESPPK 595 (1330)
T ss_dssp TTEEEEEEEEEEEEGGGEEEEECEEECCCCTTSTTCCC-------------CCEEEEEEEETTTTEEECCCC
T ss_pred CCeEEEecccccCcHHHhcceeEEEEeccchhhhhhcccCccccccccccCCceEEEeEECCccCccCCcCc
Confidence 99999999999999999999999999776 42211 1 234689999999999999999876
No 4
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=99.92 E-value=5.4e-24 Score=159.14 Aligned_cols=126 Identities=21% Similarity=0.355 Sum_probs=106.6
Q ss_pred ceeeeEEEEc--C-ceeeEEeCCEEEEccCCCCCCCeEEEEeEEEeC---CCCcEEEEEEEEeeccccCCcccc----cC
Q 030413 16 KRDLESYTIR--G-TNKIVRVGDCVLMRPSDTGKPPYVARIEKIESD---ARNNVKVRVRWYYRPEESLGGRRQ----FH 85 (177)
Q Consensus 16 ~~~y~~~~~~--g-~~~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~---~~g~~~v~v~Wfyrp~e~~~~~~~----~~ 85 (177)
-.+|+++.+. | ...++++||+|+|.+++. +.||||+|++|+++ ....+.++||||+||+|++.++.. .+
T Consensus 21 ~~~Y~~~~v~~~~~~~~~i~vGd~VLI~~~D~-~~PyVAki~~lye~~~e~~~~k~A~VQWy~R~~EiP~~k~~l~g~~~ 99 (163)
T 4dov_A 21 QQMYREICMKINDGSEIHIKVGQFVLIQGEDN-KKPYVAKLIELFQNGAEVPPKKCARVQWFVRFLEIPVSKRHLLGRSP 99 (163)
T ss_dssp EEEESEEEEECTTSCEEEEETTCEEEECCSSS-SCCEEEEEEEEEEETTSSSCEEEEEEEEEEEGGGSCTTTGGGGCSCC
T ss_pred ceeeeEEEEecCCCCCeEEeeCCEEEEeCCcc-cCChhHHHHHHHhccccCCCceEEEEEeeechhhccccchhhccCCC
Confidence 5789999884 3 147999999999999885 67899999999986 235699999999999999987543 25
Q ss_pred CCCeEEEeCCCc---ccccceEEeeeEEEeeecccccC--CCCCceEEEEeEeecCCCceeeCc
Q 030413 86 GAKELFLSDHYD---VQSAHTIEGKCIVHSFKNYTKLE--NVGAEDYYCRFEYKAASGGFTQTE 144 (177)
Q Consensus 86 ~~~ELf~S~~~d---~i~~~~I~gkc~V~~~~~~~~~~--~~~~~~Ffcr~~yd~~~~~f~~~~ 144 (177)
+.+|||+++|.+ .+++++|+|+|.|+.++.+..++ ..++++||.|..+|.+ +|+|+.
T Consensus 100 ~~qEIF~~d~~~~d~~I~aeTIi~~c~V~~~~~~e~~p~~~~~e~t~FvklsWd~k--~f~pl~ 161 (163)
T 4dov_A 100 PAQEIFWYDCSDWDNKINVETIIGPVQVVALAPEEVIPVDQKSEETLFVKLSWNKK--DFAPLP 161 (163)
T ss_dssp CTTEEEEECCSCSCCEEEGGGEEEEEEEEECCTTCCCCSSCCCCSEEEEEEEECSS--CEEECC
T ss_pred CCCeEEEecCCCCcccccHHHeeeceEEEEcCCccccCCCcccceEEEEEEEecCC--cceeCC
Confidence 689999999974 89999999999999998888774 3568999999999987 899875
No 5
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.89 E-value=7.9e-23 Score=190.18 Aligned_cols=131 Identities=26% Similarity=0.400 Sum_probs=111.4
Q ss_pred CCCceeeeEEEEcCceeeEEeCCEEEEccCC-----------------------------------------CCCCCeEE
Q 030413 13 KTGKRDLESYTIRGTNKIVRVGDCVLMRPSD-----------------------------------------TGKPPYVA 51 (177)
Q Consensus 13 ~~~~~~y~~~~~~g~~~~~~vGD~V~v~~~~-----------------------------------------~~~~~~Ig 51 (177)
.+|+..|+++.++|. +|++||+|||.++. ..+|++||
T Consensus 319 ~~~~~~~~~~~~~g~--~y~vgD~Vyl~p~~~~f~~~~~~~~~~~~~~~vd~~~ype~yrk~~~~~kg~n~~~~~P~~Ig 396 (1002)
T 3swr_A 319 LDSRVLYYSATKNGI--LYRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIG 396 (1002)
T ss_dssp CSSCEEESEEEETTE--EEETTCEEEECTTSCCCSSCCCCCCCCSCSCCCCTTTCTTSGGGHHHHHTCCCCCCCCCCEEE
T ss_pred cCCcEEEEEEEECCE--EEecCCEEEECCcccccccccccccccccccccccccchhhhhccchhccccccCCCCCceee
Confidence 457899999999987 99999999999932 13478899
Q ss_pred EEeEEEeCCCCc-------EEEEEEEEeeccccCCcc--cccCCCCeEEEeCCCcccccceEEeeeEEEeeecccccCC-
Q 030413 52 RIEKIESDARNN-------VKVRVRWYYRPEESLGGR--RQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKLEN- 121 (177)
Q Consensus 52 ~I~~i~~~~~g~-------~~v~v~Wfyrp~e~~~~~--~~~~~~~ELf~S~~~d~i~~~~I~gkc~V~~~~~~~~~~~- 121 (177)
+|++|+.+.++. ++++|+|||||+||..+. ....+.||||+|++.+++|+++|.|||.|+..+++....+
T Consensus 397 rI~~i~~~~~~~~~~~~~~~~v~v~~fyRPed~~~~~~~~~~~D~~elf~S~~~~~~~~~~i~GkC~V~~~~d~~~~~~~ 476 (1002)
T 3swr_A 397 RIKEIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQV 476 (1002)
T ss_dssp EEEEEEECCCSSSSCCSSCCEEEEEECBCGGGSTTCGGGGSSSCTTEEEECCCEEEEEGGGCCEEEEEEEGGGCSSCHHH
T ss_pred EEeEEEecCCccccCCCccEEEEEEEEECcccccccccccccCCcceEEEecceeccCHHHcceEEEEEEeccccccchh
Confidence 999999876544 999999999999998653 2345789999999999999999999999999999875432
Q ss_pred ---CCCceEEEEeEeecCCCceeeCcc
Q 030413 122 ---VGAEDYYCRFEYKAASGGFTQTEL 145 (177)
Q Consensus 122 ---~~~~~Ffcr~~yd~~~~~f~~~~~ 145 (177)
.+.+.||++..||+.++.|.++|.
T Consensus 477 ~~~~~p~~fyf~~~Yd~~~~~f~~~p~ 503 (1002)
T 3swr_A 477 YSMGGPNRFYFLEAYNAKSKSFEDPPN 503 (1002)
T ss_dssp HHHTSSSEEEEEEEEETTTTEEECCCS
T ss_pred hccCCCCeEEEEEEEeCCCCeeecCcc
Confidence 345888888999999999998775
No 6
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=99.86 E-value=8.9e-22 Score=180.05 Aligned_cols=129 Identities=17% Similarity=0.333 Sum_probs=109.3
Q ss_pred CCceeeeEEEEcCceeeEEeCCEEEEccCCCCCCCeEEEEeEEEeCCCCcEEEEEEEEeeccccCCcc-------cccCC
Q 030413 14 TGKRDLESYTIRGTNKIVRVGDCVLMRPSDTGKPPYVARIEKIESDARNNVKVRVRWYYRPEESLGGR-------RQFHG 86 (177)
Q Consensus 14 ~~~~~y~~~~~~g~~~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~g~~~v~v~Wfyrp~e~~~~~-------~~~~~ 86 (177)
..+.||.++.++|. +|++||+|||.++. +.+.+||+|.+|+++.+|..+++|+|||||+||..+. ....+
T Consensus 43 ~~~~~~~~~~~~~~--~~~~~d~~~v~~~~-~~~~~i~~i~~~~~~~~~~~~~~~~~~~r~~d~~~~~~~~~~~~~~~~d 119 (784)
T 4ft4_B 43 KARCHYRSAKVDNV--VYCLGDDVYVKAGE-NEADYIGRITEFFEGTDQCHYFTCRWFFRAEDTVINSLVSISVDGHKHD 119 (784)
T ss_dssp CEEEECSEEEETTE--EEETTCEEEECCST-TSCCEEEEEEEEEEETTSCEEEEEEEEEEGGGSTTGGGGGCCBTTBCCC
T ss_pred ccceeeeeeeECCE--EEeCCCeEEEeCCC-CCCCEEEEEEEEEEcCCCCEEEEEEEeeChhhhcccccccccccccccc
Confidence 34889999999986 99999999999865 5789999999999999999999999999999998653 23467
Q ss_pred CCeEEEeCCCcccccceEEeeeEEEeeecccccCC----CCCceEEEEeEeecCCCceeeCcc
Q 030413 87 AKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKLEN----VGAEDYYCRFEYKAASGGFTQTEL 145 (177)
Q Consensus 87 ~~ELf~S~~~d~i~~~~I~gkc~V~~~~~~~~~~~----~~~~~Ffcr~~yd~~~~~f~~~~~ 145 (177)
+||||+|++.+++|+++|.+||.|++.+....... .....|||++.|+....+|..++.
T Consensus 120 ~~~~~~s~~~~~~~~~~i~~k~~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 182 (784)
T 4ft4_B 120 PRRVFLSEEKNDNVLDCIISKVKIVHVDPNMDPKAKAQLIESCDLYYDMSYSVAYSTFANISS 182 (784)
T ss_dssp TTBEEEEEEEEEEEGGGEEEECCEEECCTTSCHHHHHHHHHHCSEEESEEEETGGGEEEEC--
T ss_pred cceEEEeCcEEEechHHeeeeEEEEeeCccccchhhhhccCCcceEeccccCccccCccCCCc
Confidence 89999999999999999999999999875443322 124579999999999999988764
No 7
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.85 E-value=3.2e-21 Score=183.22 Aligned_cols=131 Identities=23% Similarity=0.428 Sum_probs=111.5
Q ss_pred CCCceeeeEEEEcCceeeEEeCCEEEEccCC-----------------------------------------CCCCCeEE
Q 030413 13 KTGKRDLESYTIRGTNKIVRVGDCVLMRPSD-----------------------------------------TGKPPYVA 51 (177)
Q Consensus 13 ~~~~~~y~~~~~~g~~~~~~vGD~V~v~~~~-----------------------------------------~~~~~~Ig 51 (177)
.+|+.+|++|+++|. +|++||+|||.++. ...|++||
T Consensus 631 ~~~~~~Y~~~~~~g~--~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~~~~~ype~yrk~~~~~kg~~~~~~~Py~Ig 708 (1330)
T 3av4_A 631 VDGRVYCSSITKNGV--VYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIG 708 (1330)
T ss_dssp SSSSEEEEEEEETTE--EEETTCEEEECTTSCCCCCCC-------CCCCCCTTTCSSGGGGGC-------CCCCCCCEEE
T ss_pred ccCceeeeEEEECCE--EEecCCEEEECcccccccccccccccccccccccccccchhhhcccccccccccCCCCCceEE
Confidence 357899999999986 99999999998862 13567899
Q ss_pred EEeEEEeCCC------CcEEEEEEEEeeccccCCcc--cccCCCCeEEEeCCCcccccceEEeeeEEEeeeccccc-CC-
Q 030413 52 RIEKIESDAR------NNVKVRVRWYYRPEESLGGR--RQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKL-EN- 121 (177)
Q Consensus 52 ~I~~i~~~~~------g~~~v~v~Wfyrp~e~~~~~--~~~~~~~ELf~S~~~d~i~~~~I~gkc~V~~~~~~~~~-~~- 121 (177)
||.+||.+.+ +..+++|+|||||+||..+. ....+.||||+|++.+++|+++|.|||.|++..++.+. ++
T Consensus 709 qI~eI~~~~~s~~~~~~~~~vrV~wFyRPedt~~~~~~~~~~D~nELf~S~~~~~vp~~~I~GKC~V~~~~d~~~~i~~y 788 (1330)
T 3av4_A 709 RIKEIHCGKKKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDY 788 (1330)
T ss_dssp EEEECCCCEETTEECSSCCEEEEEEEECTTTSTTGGGTTTTSCTTBCEEEEEEEEEEGGGCCEEEEEEESTTCSSCHHHH
T ss_pred EEEEEEecCCccccCCCceEEEEEEeeChhhcccccccccccCcceEEeeccceecCHHHcCceEEEEeccccccccccc
Confidence 9999998754 57999999999999998763 22478999999999999999999999999999988763 22
Q ss_pred --CCCceEEEEeEeecCCCceeeCcc
Q 030413 122 --VGAEDYYCRFEYKAASGGFTQTEL 145 (177)
Q Consensus 122 --~~~~~Ffcr~~yd~~~~~f~~~~~ 145 (177)
.+.+.|||+..||+.+++|..+|.
T Consensus 789 ~~~g~d~Fy~~~~Yd~~~k~~~~~P~ 814 (1330)
T 3av4_A 789 SQGGPDRFYFLEAYNSKTKNFEDPPN 814 (1330)
T ss_dssp HHTSTTEEEESCEEETTTTEEECCCG
T ss_pred ccCCCCeEEEEEEecccCCeeccCch
Confidence 346899999999999999987665
No 8
>2fl7_A Regulatory protein SIR3; ORC, silencing, chromatin, transcription; 1.85A {Saccharomyces cerevisiae} PDB: 2fvu_A 3tu4_K*
Probab=99.67 E-value=3.8e-16 Score=123.08 Aligned_cols=121 Identities=15% Similarity=0.163 Sum_probs=95.3
Q ss_pred EEEcCceeeEEeCCEEEEccCCCCCCCeEEEEeEEEeCC-CCcEEEEEEEEeeccccCCc-------cc--------cc-
Q 030413 22 YTIRGTNKIVRVGDCVLMRPSDTGKPPYVARIEKIESDA-RNNVKVRVRWYYRPEESLGG-------RR--------QF- 84 (177)
Q Consensus 22 ~~~~g~~~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~-~g~~~v~v~Wfyrp~e~~~~-------~~--------~~- 84 (177)
+....++.++++||.|.|..++ .+.+.++.|.+|.-.. +.-+.+.|.||+|..|+... .. .+
T Consensus 44 L~R~~Dg~~~~~GDsVlv~~~~-~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~ 122 (232)
T 2fl7_A 44 LKRISDGLSFGKGESVIFNDNV-TETYSVYLIHEIRLNTLNNVVEIWVFSYLRWFELKPKLYYEQFRPDLIKEDHPLEFY 122 (232)
T ss_dssp EEETTTCCEECTTCEEEEEETT-TTEEEEEEEEEEEC-----CCEEEEEEEECGGGSCHHHHHHHHCHHHHHTTCCHHHH
T ss_pred EEEccCCcEEeCCCEEEEecCC-CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhhh
Confidence 4554567899999999998875 4678888888887765 55789999999999999651 11 23
Q ss_pred -------CCCCeEEEeCCCcccccceEEeeeEEEeeeccccc--CCCCCceEEEEeEeecCCCceeeC
Q 030413 85 -------HGAKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKL--ENVGAEDYYCRFEYKAASGGFTQT 143 (177)
Q Consensus 85 -------~~~~ELf~S~~~d~i~~~~I~gkc~V~~~~~~~~~--~~~~~~~Ffcr~~yd~~~~~f~~~ 143 (177)
...||||+|.+.+.|-+.+|+++|.|++.++|..+ +.....+||||+++|+...+|.++
T Consensus 123 ~~~~~~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~l~~d~~~~~tFf~R~~cd~~~~~f~~i 190 (232)
T 2fl7_A 123 KDKFFNEVNKSELYLTAELSEIWLKDFIAVGQILPESQWNDSSIDKIEDRDFLVRYACEPTAEKFVPI 190 (232)
T ss_dssp HHHHHHHSCTTEEEEEEEEEEECGGGEEEECEEECTTTC-------CTTTEEEEEEECCTTSCSCEEC
T ss_pred hhhhhcccccceEEEeccHHHHHHHhhhhheEeccHHHHHHhcccccCCceEEEEEEEcCCcCccccc
Confidence 78999999999999999999999999999999976 434578999999999988888853
No 9
>1m4z_A Origin recognition complex subunit 1; DNA replication, transcriptional silencing, chromatin, BAH D gene regulation; 2.20A {Saccharomyces cerevisiae} SCOP: b.34.12.1 PDB: 1zhi_A 1zbx_A
Probab=99.66 E-value=4.2e-16 Score=123.23 Aligned_cols=121 Identities=16% Similarity=0.140 Sum_probs=101.2
Q ss_pred EEEcCceeeEEeCCEEEEccCCCCCCCeEEEEeEEEeCC-CCcEEEEEEEEeeccccCCc-------cc--------cc-
Q 030413 22 YTIRGTNKIVRVGDCVLMRPSDTGKPPYVARIEKIESDA-RNNVKVRVRWYYRPEESLGG-------RR--------QF- 84 (177)
Q Consensus 22 ~~~~g~~~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~-~g~~~v~v~Wfyrp~e~~~~-------~~--------~~- 84 (177)
+....+|.++++||.|.|..++ .+.+.++.|.+|.-.. +.-+.+.|.||+|..|+... .. .+
T Consensus 44 L~R~~Dg~~~~~GDsVlv~~~~-~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~ 122 (238)
T 1m4z_A 44 LKRSSDGIKLGRGDSVVMHNEA-AGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVNPLAHYRQFNPDANILNRPLNYY 122 (238)
T ss_dssp EEETTTCCEECTTCEEEEEETT-TTEEEEEEEEEEEEETTTTEEEEEEEEEECGGGSCHHHHHHHHCHHHHHSCCCHHHH
T ss_pred EEEccCCcEEeCCCEEEEecCC-CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhhh
Confidence 5555567899999999998875 4678888999997765 55789999999999999651 11 23
Q ss_pred -------CCCCeEEEeCCCcccccceEEeeeEEEeeeccccc--CCCCCceEEEEeEeecCCCceeeC
Q 030413 85 -------HGAKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKL--ENVGAEDYYCRFEYKAASGGFTQT 143 (177)
Q Consensus 85 -------~~~~ELf~S~~~d~i~~~~I~gkc~V~~~~~~~~~--~~~~~~~Ffcr~~yd~~~~~f~~~ 143 (177)
...||||+|.+.+.|-+.+|+++|.|++.++|..+ +.....+||||+++|+...+|.+.
T Consensus 123 ~~~~~~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~i~~d~~~~~tFf~R~~cd~~~~~f~~i 190 (238)
T 1m4z_A 123 NKLFSETANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLKGNVDPERDFTVRYICEPTGEKFVDI 190 (238)
T ss_dssp HHHHHHHSCTTEEEEEEEEEEECGGGEEEEEEEECHHHHHHHGGGCCTTTEEEEEEECCTTSCCCEEC
T ss_pred hhhhhcccccceEEEeccHHHHhHHhhhhheEeccHHHHhhhccccccCceEEEEEEEcCCcCccccc
Confidence 78999999999999999999999999999999876 444578999999999988888853
No 10
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.92 E-value=2.4e-06 Score=52.02 Aligned_cols=26 Identities=15% Similarity=0.466 Sum_probs=23.6
Q ss_pred cccccc--------cccCccchhcccccccccchhh
Q 030413 145 LLCTAN--------VRCLITRMISWYNVRGARTGII 172 (177)
Q Consensus 145 ~~C~c~--------~~C~~~~c~~wyH~~C~~~~~~ 172 (177)
..|+|+ |+| +.|..|||.+|++++..
T Consensus 5 ~~C~C~~~~~~~~MI~C--d~C~~W~H~~Cvgi~~~ 38 (52)
T 3o7a_A 5 VTCFCMKPFAGRPMIEC--NECHTWIHLSCAKIRKS 38 (52)
T ss_dssp BCSTTCCBCTTCCEEEC--TTTCCEEETTTTTCCGG
T ss_pred eEEEeCCcCCCCCEEEc--CCCCccccccccCCCcc
Confidence 478998 999 99999999999999874
No 11
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.91 E-value=2.3e-06 Score=56.66 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=28.4
Q ss_pred CCceeeCc--cccccc---------cccCccchhcccccccccchhhh
Q 030413 137 SGGFTQTE--LLCTAN---------VRCLITRMISWYNVRGARTGIIL 173 (177)
Q Consensus 137 ~~~f~~~~--~~C~c~---------~~C~~~~c~~wyH~~C~~~~~~~ 173 (177)
.+.|.+.. .+|+|+ |+| |.|..|||..|++++...
T Consensus 3 ~~~~~~~~~~~~C~C~~~~d~~~~MIqC--d~C~~WfH~~Cvgl~~~~ 48 (79)
T 1wep_A 3 SGSSGMALVPVYCLCRQPYNVNHFMIEC--GLCQDWFHGSCVGIEEEN 48 (79)
T ss_dssp SCCCCCCCCCCCSTTSCSCCSSSCEEEB--TTTCCEEEHHHHTCCHHH
T ss_pred CCccCccCCccEEEcCCccCCCCceEEc--CCCCCcEEeeecCccccc
Confidence 45566543 499998 999 999999999999998753
No 12
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.79 E-value=3.8e-06 Score=55.11 Aligned_cols=28 Identities=18% Similarity=0.447 Sum_probs=24.6
Q ss_pred ccccccc--------cccCccchhcccccccccchhhh
Q 030413 144 ELLCTAN--------VRCLITRMISWYNVRGARTGIIL 173 (177)
Q Consensus 144 ~~~C~c~--------~~C~~~~c~~wyH~~C~~~~~~~ 173 (177)
..+|+|+ |+| +.|..|||..|++++...
T Consensus 16 ~~~C~C~~~~~~~~MI~C--d~C~~WfH~~Cvgl~~~~ 51 (76)
T 1wem_A 16 ALYCICRQPHNNRFMICC--DRCEEWFHGDCVGISEAR 51 (76)
T ss_dssp CCCSTTCCCCCSSCEEEC--SSSCCEEEHHHHSCCHHH
T ss_pred CCEEECCCccCCCCEEEe--CCCCCcEeCeEEccchhh
Confidence 4589998 999 999999999999998653
No 13
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=97.75 E-value=4.2e-06 Score=54.85 Aligned_cols=30 Identities=10% Similarity=0.341 Sum_probs=25.6
Q ss_pred eCccccccc---------cccCccchhcccccccccchhhh
Q 030413 142 QTELLCTAN---------VRCLITRMISWYNVRGARTGIIL 173 (177)
Q Consensus 142 ~~~~~C~c~---------~~C~~~~c~~wyH~~C~~~~~~~ 173 (177)
....+|+|+ |+| +.|..|||.+|++++...
T Consensus 8 ~~~~yCiC~~~~~~~~~MI~C--d~C~~WfH~~Cvg~~~~~ 46 (75)
T 3kqi_A 8 TVPVYCVCRLPYDVTRFMIEC--DACKDWFHGSCVGVEEEE 46 (75)
T ss_dssp CCCEETTTTEECCTTSCEEEC--TTTCCEEEHHHHTCCTTT
T ss_pred CCeeEEECCCcCCCCCCEEEc--CCCCCCEecccccccccc
Confidence 344599998 999 999999999999998653
No 14
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=97.74 E-value=5.6e-06 Score=53.29 Aligned_cols=26 Identities=15% Similarity=0.466 Sum_probs=23.7
Q ss_pred cccccc--------cccCccchhcccccccccchhh
Q 030413 145 LLCTAN--------VRCLITRMISWYNVRGARTGII 172 (177)
Q Consensus 145 ~~C~c~--------~~C~~~~c~~wyH~~C~~~~~~ 172 (177)
..|+|+ |+| +.|..|||.+|++++..
T Consensus 20 ~~CiC~~~~~~~~MIqC--d~C~~WfH~~Cvgi~~~ 53 (68)
T 3o70_A 20 VTCFCMKPFAGRPMIEC--NECHTWIHLSCAKIRKS 53 (68)
T ss_dssp CCSTTCCCCTTCCEEEC--TTTCCEEETTTTTCCTT
T ss_pred eEeECCCcCCCCCEEEC--CCCCccccccccCcCcc
Confidence 489999 999 99999999999999864
No 15
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.74 E-value=6.2e-06 Score=52.22 Aligned_cols=26 Identities=12% Similarity=0.358 Sum_probs=22.9
Q ss_pred ccc-ccc---------cccCccchhcccccccccchhh
Q 030413 145 LLC-TAN---------VRCLITRMISWYNVRGARTGII 172 (177)
Q Consensus 145 ~~C-~c~---------~~C~~~~c~~wyH~~C~~~~~~ 172 (177)
.+| +|+ |+| +.|..|||..|++++..
T Consensus 7 ~~C~~C~~~~~~~~~mI~C--d~C~~WfH~~Cvgl~~~ 42 (64)
T 1we9_A 7 GQCGACGESYAADEFWICC--DLCEMWFHGKCVKITPA 42 (64)
T ss_dssp CCCSSSCCCCCSSSCEEEC--SSSCCEEETTTTTCCTT
T ss_pred CCCCCCCCccCCCCCEEEc--cCCCCCCCccccCcChh
Confidence 467 777 999 99999999999999865
No 16
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.68 E-value=7e-06 Score=52.37 Aligned_cols=21 Identities=10% Similarity=0.270 Sum_probs=19.4
Q ss_pred cccCcc-chhcccccccccchhhh
Q 030413 151 VRCLIT-RMISWYNVRGARTGIIL 173 (177)
Q Consensus 151 ~~C~~~-~c~~wyH~~C~~~~~~~ 173 (177)
|+| | +|+.|||.+|+|++...
T Consensus 25 I~C--D~~C~~WfH~~Cvglt~~~ 46 (65)
T 2vpb_A 25 ILC--EASCQKWFHRICTGMTETA 46 (65)
T ss_dssp EEB--TTTTCCEEEHHHHTCCHHH
T ss_pred Eec--ccCccccCchhccCCCHHH
Confidence 999 9 99999999999999753
No 17
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.67 E-value=9.4e-06 Score=49.39 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=18.9
Q ss_pred cccCcc-chhcccccccccchhhh
Q 030413 151 VRCLIT-RMISWYNVRGARTGIIL 173 (177)
Q Consensus 151 ~~C~~~-~c~~wyH~~C~~~~~~~ 173 (177)
|+| | .|..|||.+|++++...
T Consensus 19 I~C--d~~C~~WfH~~Cvgl~~~~ 40 (52)
T 2kgg_A 19 VQC--DGGCDEWFHQVCVGVSPEM 40 (52)
T ss_dssp EEC--TTTTCCEEETTTTTCCHHH
T ss_pred EEe--CCCCCccCcccccCCCccc
Confidence 999 9 89999999999998653
No 18
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.61 E-value=1.1e-05 Score=52.40 Aligned_cols=26 Identities=15% Similarity=0.333 Sum_probs=23.3
Q ss_pred cccccc---------cccCccchhcccccccccchhh
Q 030413 145 LLCTAN---------VRCLITRMISWYNVRGARTGII 172 (177)
Q Consensus 145 ~~C~c~---------~~C~~~~c~~wyH~~C~~~~~~ 172 (177)
..|+|+ |+| +.|..|||..|++++..
T Consensus 17 ~~C~C~~~~~~g~~mI~C--d~C~~W~H~~Cvg~~~~ 51 (72)
T 1wee_A 17 VDCKCGTKDDDGERMLAC--DGCGVWHHTRCIGINNA 51 (72)
T ss_dssp ECCTTCCCSCCSSCEEEC--SSSCEEEETTTTTCCTT
T ss_pred eEeeCCCccCCCCcEEEC--CCCCCccCCeeeccCcc
Confidence 388888 999 99999999999999853
No 19
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.60 E-value=1.1e-05 Score=51.74 Aligned_cols=26 Identities=12% Similarity=0.353 Sum_probs=22.4
Q ss_pred cccccc--------cccCccc--hhcccccccccchhh
Q 030413 145 LLCTAN--------VRCLITR--MISWYNVRGARTGII 172 (177)
Q Consensus 145 ~~C~c~--------~~C~~~~--c~~wyH~~C~~~~~~ 172 (177)
..|+|+ |+| ++ |..|||..|+|++..
T Consensus 11 v~C~C~~~~~~g~mI~C--D~~~C~~W~H~~Cvgi~~~ 46 (68)
T 2rsd_A 11 VRCICSSTMVNDSMIQC--EDQRCQVWQHLNCVLIPDK 46 (68)
T ss_dssp ECCTTCCCSCCSCEEEC--SCTTTCEEEETTTSCCCSS
T ss_pred EEeECCCCcCCCCEEEE--CCCCCCCeEchhhCCCCcc
Confidence 489996 999 85 999999999998653
No 20
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=97.59 E-value=1.1e-05 Score=50.46 Aligned_cols=26 Identities=12% Similarity=0.436 Sum_probs=22.7
Q ss_pred cccccc-------cccCccc--hh-cccccccccchhh
Q 030413 145 LLCTAN-------VRCLITR--MI-SWYNVRGARTGII 172 (177)
Q Consensus 145 ~~C~c~-------~~C~~~~--c~-~wyH~~C~~~~~~ 172 (177)
.+|+|+ |+| |+ |. .|||.+|++++..
T Consensus 10 ~yC~C~~~~~g~mi~C--D~~~C~~~wfH~~Cvgl~~~ 45 (59)
T 3c6w_A 10 TYCLCHQVSYGEMIGC--DNPDCPIEWFHFACVDLTTK 45 (59)
T ss_dssp EETTTTEECCSEEEEC--SCTTCSSCEEETGGGTCSSC
T ss_pred cEEECCCCCCCCeeEe--eCCCCCCCCEecccCCcccC
Confidence 489999 999 99 77 7999999998764
No 21
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.58 E-value=8.8e-06 Score=53.68 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=24.5
Q ss_pred ccccccc--------cccCcc--chhcccccccccchhhh
Q 030413 144 ELLCTAN--------VRCLIT--RMISWYNVRGARTGIIL 173 (177)
Q Consensus 144 ~~~C~c~--------~~C~~~--~c~~wyH~~C~~~~~~~ 173 (177)
+..|+|+ |+| + .|..|||..|++++...
T Consensus 16 ~~~CiC~~~~~~g~MI~C--D~~~C~~W~H~~CVgi~~~~ 53 (78)
T 1wew_A 16 KVRCVCGNSLETDSMIQC--EDPRCHVWQHVGCVILPDKP 53 (78)
T ss_dssp CCCCSSCCCCCCSCEEEC--SSTTTCCEEEHHHHSCCCTT
T ss_pred CEEeECCCcCCCCCEEEE--CCccCCccccCEEEcccccc
Confidence 3499999 999 8 99999999999998653
No 22
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=97.58 E-value=1.2e-05 Score=50.69 Aligned_cols=27 Identities=15% Similarity=0.450 Sum_probs=22.9
Q ss_pred ccccccc-------cccCccc--hh-cccccccccchhh
Q 030413 144 ELLCTAN-------VRCLITR--MI-SWYNVRGARTGII 172 (177)
Q Consensus 144 ~~~C~c~-------~~C~~~~--c~-~wyH~~C~~~~~~ 172 (177)
+.+|+|+ |+| |. |. .|||.+|++++..
T Consensus 11 ~~yC~C~~~~~g~MI~C--D~c~C~~~WfH~~Cvgl~~~ 47 (62)
T 2g6q_A 11 PTYCLCNQVSYGEMIGC--DNEQCPIEWFHFSCVSLTYK 47 (62)
T ss_dssp CEETTTTEECCSEEEEC--SCTTCSSCEEETGGGTCSSC
T ss_pred CcEEECCCCCCCCeeee--eCCCCCcccEecccCCcCcC
Confidence 3489999 999 99 55 8999999998753
No 23
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.56 E-value=1.8e-05 Score=53.77 Aligned_cols=26 Identities=12% Similarity=0.437 Sum_probs=22.7
Q ss_pred cccccc-------cccCccc--hh-cccccccccchhh
Q 030413 145 LLCTAN-------VRCLITR--MI-SWYNVRGARTGII 172 (177)
Q Consensus 145 ~~C~c~-------~~C~~~~--c~-~wyH~~C~~~~~~ 172 (177)
.+|+|+ |+| |. |. .|||+.||+++..
T Consensus 37 ~yCiC~~~~~g~MI~C--D~~dC~~~WfH~~CVgl~~~ 72 (91)
T 1weu_A 37 TYCLCHQVSYGEMIGC--DNPDCSIEWFHFACVGLTTK 72 (91)
T ss_dssp BCSTTCCBCCSCCCCC--SCSSCSCCCCCSTTTTCSSC
T ss_pred cEEECCCCCCCCEeEe--cCCCCCCCCEecccCCcCcC
Confidence 489999 999 99 77 7999999998763
No 24
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=97.54 E-value=1.6e-05 Score=51.52 Aligned_cols=26 Identities=12% Similarity=0.437 Sum_probs=22.8
Q ss_pred cccccc-------cccCccc--hh-cccccccccchhh
Q 030413 145 LLCTAN-------VRCLITR--MI-SWYNVRGARTGII 172 (177)
Q Consensus 145 ~~C~c~-------~~C~~~~--c~-~wyH~~C~~~~~~ 172 (177)
.+|+|+ |+| |. |. .|||+.|++++..
T Consensus 17 ~~C~C~~~~~g~MI~C--D~~~C~~~wfH~~Cvgl~~~ 52 (71)
T 1wen_A 17 TYCLCHQVSYGEMIGC--DNPDCSIEWFHFACVGLTTK 52 (71)
T ss_dssp CCSTTCCCSCSSEECC--SCSSCSCCCEETTTTTCSSC
T ss_pred CEEECCCCCCCCEeEe--eCCCCCCccEecccCCcCcC
Confidence 499998 999 99 87 7999999998764
No 25
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=97.50 E-value=2.9e-05 Score=53.42 Aligned_cols=34 Identities=12% Similarity=0.386 Sum_probs=27.6
Q ss_pred CCCceeeCccccccc--------cccCccchhcccccccccchh
Q 030413 136 ASGGFTQTELLCTAN--------VRCLITRMISWYNVRGARTGI 171 (177)
Q Consensus 136 ~~~~f~~~~~~C~c~--------~~C~~~~c~~wyH~~C~~~~~ 171 (177)
+.+........|+|. |+| +.|..|||..|++++.
T Consensus 20 edg~~~~d~vrCiC~~~~~~~~mi~C--d~C~~w~H~~C~~~~~ 61 (98)
T 2lv9_A 20 EDGSYGTDVTRCICGFTHDDGYMICC--DKCSVWQHIDCMGIDR 61 (98)
T ss_dssp TTCCCCCCBCCCTTSCCSCSSCEEEB--TTTCBEEETTTTTCCT
T ss_pred ccCCCCCCCEEeECCCccCCCcEEEc--CCCCCcCcCcCCCCCc
Confidence 444555555689998 999 9999999999999864
No 26
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=97.47 E-value=2e-05 Score=49.35 Aligned_cols=27 Identities=11% Similarity=0.415 Sum_probs=22.9
Q ss_pred ccccccc-------cccCccc--hh-cccccccccchhh
Q 030413 144 ELLCTAN-------VRCLITR--MI-SWYNVRGARTGII 172 (177)
Q Consensus 144 ~~~C~c~-------~~C~~~~--c~-~wyH~~C~~~~~~ 172 (177)
..+|+|+ |+| |+ |. .|||+.|++++..
T Consensus 10 ~~~C~C~~~~~g~mi~C--D~cdC~~~wfH~~Cvgl~~~ 46 (60)
T 2vnf_A 10 PTYCLCHQVSYGEMIGC--DNPDCSIEWFHFACVGLTTK 46 (60)
T ss_dssp CEETTTTEECCSEEEEC--SCTTCSSCEEETGGGTCSSC
T ss_pred CCEEECCCcCCCCEEEe--CCCCCCCceEehhcCCCCcC
Confidence 3489998 999 99 66 8999999998764
No 27
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=97.41 E-value=3.4e-05 Score=52.23 Aligned_cols=27 Identities=19% Similarity=0.464 Sum_probs=23.4
Q ss_pred ccccccc-------cccCccchh---cccccccccchhh
Q 030413 144 ELLCTAN-------VRCLITRMI---SWYNVRGARTGII 172 (177)
Q Consensus 144 ~~~C~c~-------~~C~~~~c~---~wyH~~C~~~~~~ 172 (177)
..+|+|+ |+| |.|. .|||+.||+++..
T Consensus 26 ~~yCiC~~~~~g~MI~C--D~c~C~~eWfH~~CVgl~~~ 62 (90)
T 2jmi_A 26 EVYCFCRNVSYGPMVAC--DNPACPFEWFHYGCVGLKQA 62 (90)
T ss_dssp SCCSTTTCCCSSSEECC--CSSSCSCSCEETTTSSCSSC
T ss_pred CcEEEeCCCCCCCEEEe--cCCCCccccCcCccCCCCcC
Confidence 3499999 999 9977 8999999998764
No 28
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=97.34 E-value=2.7e-05 Score=50.74 Aligned_cols=25 Identities=20% Similarity=0.504 Sum_probs=22.0
Q ss_pred cc-ccc--------cccCccchhcccccccccchhh
Q 030413 146 LC-TAN--------VRCLITRMISWYNVRGARTGII 172 (177)
Q Consensus 146 ~C-~c~--------~~C~~~~c~~wyH~~C~~~~~~ 172 (177)
.| +|+ |+| |.|..|||..|++++..
T Consensus 20 ~C~~C~~~~~~~~mi~C--D~C~~wfH~~Cv~~~~~ 53 (75)
T 2k16_A 20 ICPGCNKPDDGSPMIGC--DDCDDWYHWPCVGIMAA 53 (75)
T ss_dssp CBTTTTBCCSSCCEEEC--SSSSSEEEHHHHTCSSC
T ss_pred CCCCCCCCCCCCCEEEc--CCCCcccccccCCCCcc
Confidence 67 776 999 99999999999998764
No 29
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.33 E-value=3.6e-05 Score=49.72 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=23.1
Q ss_pred ccccccc-------cccCccchh---cccccccccchhh
Q 030413 144 ELLCTAN-------VRCLITRMI---SWYNVRGARTGII 172 (177)
Q Consensus 144 ~~~C~c~-------~~C~~~~c~---~wyH~~C~~~~~~ 172 (177)
+.+|+|+ |+| |.|. .|||.+||+++..
T Consensus 6 ~~yC~C~~~~~g~MI~C--D~cdC~~~WfH~~Cvgl~~~ 42 (70)
T 1x4i_A 6 SGYCICNQVSYGEMVGC--DNQDCPIEWFHYGCVGLTEA 42 (70)
T ss_dssp CCCSTTSCCCCSSEECC--SCTTCSCCCEEHHHHTCSSC
T ss_pred CeEEEcCCCCCCCEeEe--CCCCCCccCCcccccccCcC
Confidence 4599999 999 9974 8999999998763
No 30
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.09 E-value=0.00015 Score=50.46 Aligned_cols=20 Identities=10% Similarity=0.330 Sum_probs=18.3
Q ss_pred cccCcc-chhcccccccccchhh
Q 030413 151 VRCLIT-RMISWYNVRGARTGII 172 (177)
Q Consensus 151 ~~C~~~-~c~~wyH~~C~~~~~~ 172 (177)
|+| + .|..|||.+|++++..
T Consensus 20 i~C--dd~C~~WfH~~CVglt~~ 40 (105)
T 2xb1_A 20 ILC--EASCQKWFHRECTGMTES 40 (105)
T ss_dssp EEC--TTTTCCEEEGGGTTCCHH
T ss_pred EEe--cCCcccccccccCCcCHH
Confidence 889 8 9999999999999864
No 31
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=96.58 E-value=0.0004 Score=60.43 Aligned_cols=27 Identities=11% Similarity=0.380 Sum_probs=24.3
Q ss_pred cccccc---------cccCccchhcccccccccchhhh
Q 030413 145 LLCTAN---------VRCLITRMISWYNVRGARTGIIL 173 (177)
Q Consensus 145 ~~C~c~---------~~C~~~~c~~wyH~~C~~~~~~~ 173 (177)
.+|+|+ |+| |.|..|||.+|+|++...
T Consensus 38 ~yC~C~~~~d~~~~MIqC--d~C~~WfH~~Cvgl~~~~ 73 (488)
T 3kv5_D 38 VYCVCRQPYDVNRFMIEC--DICKDWFHGSCVGVEEHH 73 (488)
T ss_dssp EETTTTEECCTTSCEEEB--TTTCCEEEHHHHTCCGGG
T ss_pred eEEeCCCcCCCCCCeEEc--cCCCCceeeeecCcCccc
Confidence 489999 999 999999999999998753
No 32
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=95.07 E-value=0.0057 Score=53.41 Aligned_cols=20 Identities=15% Similarity=0.473 Sum_probs=18.8
Q ss_pred cccCccchhcccccccccchhh
Q 030413 151 VRCLITRMISWYNVRGARTGII 172 (177)
Q Consensus 151 ~~C~~~~c~~wyH~~C~~~~~~ 172 (177)
|+| |.|+.|||..|+|++..
T Consensus 59 I~C--D~C~~WfH~~CVgi~~~ 78 (528)
T 3pur_A 59 IGC--DSCQTWYHFLCSGLEQF 78 (528)
T ss_dssp EEC--TTTCCEEEGGGTTCCGG
T ss_pred EEC--CCCCcCCCCcCCCCChh
Confidence 999 99999999999999874
No 33
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=94.96 E-value=0.0075 Score=38.04 Aligned_cols=18 Identities=6% Similarity=0.126 Sum_probs=16.6
Q ss_pred cccCccchhcccccccccch
Q 030413 151 VRCLITRMISWYNVRGARTG 170 (177)
Q Consensus 151 ~~C~~~~c~~wyH~~C~~~~ 170 (177)
+.| |.|..|||+.|+++.
T Consensus 21 l~C--D~C~~~fH~~Cl~pp 38 (66)
T 1xwh_A 21 ICC--DGCPRAFHLACLSPP 38 (66)
T ss_dssp EEC--SSCCCEECTTTSSSC
T ss_pred EEc--CCCChhhcccccCCC
Confidence 999 999999999999954
No 34
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=94.77 E-value=0.0046 Score=36.85 Aligned_cols=18 Identities=11% Similarity=0.235 Sum_probs=16.3
Q ss_pred cccCccchhcccccccccch
Q 030413 151 VRCLITRMISWYNVRGARTG 170 (177)
Q Consensus 151 ~~C~~~~c~~wyH~~C~~~~ 170 (177)
+.| |.|..|||+.|+++.
T Consensus 16 l~C--d~C~~~~H~~Cl~p~ 33 (51)
T 1f62_A 16 ILC--DECNKAFHLFCLRPA 33 (51)
T ss_dssp EEC--TTTCCEECHHHHCTT
T ss_pred EEC--CCCChhhCcccCCCC
Confidence 889 999999999999754
No 35
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=93.95 E-value=0.014 Score=36.03 Aligned_cols=18 Identities=11% Similarity=0.213 Sum_probs=16.6
Q ss_pred cccCccchhcccccccccch
Q 030413 151 VRCLITRMISWYNVRGARTG 170 (177)
Q Consensus 151 ~~C~~~~c~~wyH~~C~~~~ 170 (177)
+.| +.|..|||+.|+++.
T Consensus 18 l~C--d~C~~~fH~~Cl~pp 35 (60)
T 2puy_A 18 LMC--DTCSRVYHLDCLDPP 35 (60)
T ss_dssp EEC--SSSSCEECGGGSSSC
T ss_pred EEc--CCCCcCEECCcCCCC
Confidence 899 999999999999954
No 36
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.94 E-value=0.013 Score=35.71 Aligned_cols=18 Identities=11% Similarity=0.213 Sum_probs=16.6
Q ss_pred cccCccchhcccccccccch
Q 030413 151 VRCLITRMISWYNVRGARTG 170 (177)
Q Consensus 151 ~~C~~~~c~~wyH~~C~~~~ 170 (177)
+.| +.|..|||+.|+++.
T Consensus 22 l~C--d~C~~~~H~~Cl~pp 39 (56)
T 2yql_A 22 LMC--DTCSRVYHLDCLDPP 39 (56)
T ss_dssp EEC--SSSSCEECSSSSSSC
T ss_pred EEc--CCCCcceECccCCCC
Confidence 999 999999999999954
No 37
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=93.68 E-value=0.011 Score=36.75 Aligned_cols=23 Identities=13% Similarity=0.333 Sum_probs=19.9
Q ss_pred cc-ccc-----cccCccchhcccccccccch
Q 030413 146 LC-TAN-----VRCLITRMISWYNVRGARTG 170 (177)
Q Consensus 146 ~C-~c~-----~~C~~~~c~~wyH~~C~~~~ 170 (177)
.| +|. +.| |.|..|||+.|+++.
T Consensus 13 ~C~vC~~~g~ll~C--D~C~~~fH~~Cl~p~ 41 (61)
T 2l5u_A 13 YCEVCQQGGEIILC--DTCPRAYHMVCLDPD 41 (61)
T ss_dssp SCTTTSCCSSEEEC--SSSSCEEEHHHHCTT
T ss_pred CCccCCCCCcEEEC--CCCChhhhhhccCCC
Confidence 55 376 999 999999999999985
No 38
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=93.60 E-value=0.019 Score=36.64 Aligned_cols=18 Identities=6% Similarity=0.093 Sum_probs=16.6
Q ss_pred cccCccchhcccccccccch
Q 030413 151 VRCLITRMISWYNVRGARTG 170 (177)
Q Consensus 151 ~~C~~~~c~~wyH~~C~~~~ 170 (177)
+.| |+|..+||+.|+++.
T Consensus 34 l~C--D~C~~~yH~~Cl~Pp 51 (70)
T 3asl_A 34 LMC--DECDMAFHIYCLDPP 51 (70)
T ss_dssp EEC--TTTCCEEEGGGSSSC
T ss_pred EEc--CCCCCceecccCCCC
Confidence 999 999999999999953
No 39
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.75 E-value=0.018 Score=36.38 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=16.6
Q ss_pred cccCccchhcccccccccch
Q 030413 151 VRCLITRMISWYNVRGARTG 170 (177)
Q Consensus 151 ~~C~~~~c~~wyH~~C~~~~ 170 (177)
+.| +.|..+||+.|+++.
T Consensus 25 l~C--d~C~~~~H~~Cl~P~ 42 (66)
T 2lri_C 25 LRC--THCAAAFHWRCHFPA 42 (66)
T ss_dssp EEC--SSSCCEECHHHHCTT
T ss_pred EEC--CCCCCceecccCCCc
Confidence 999 999999999999755
No 40
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.66 E-value=0.026 Score=37.98 Aligned_cols=18 Identities=11% Similarity=0.063 Sum_probs=16.6
Q ss_pred cccCccchhcccccccccch
Q 030413 151 VRCLITRMISWYNVRGARTG 170 (177)
Q Consensus 151 ~~C~~~~c~~wyH~~C~~~~ 170 (177)
+.| |.|..|||+.|+++.
T Consensus 32 l~C--D~C~~~~H~~Cl~Pp 49 (92)
T 2e6r_A 32 LFC--DGCDDNYHIFCLLPP 49 (92)
T ss_dssp EEC--TTTCCEECSSSSSSC
T ss_pred EEc--CCCCchhccccCCCC
Confidence 999 999999999999954
No 41
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=92.31 E-value=0.02 Score=36.68 Aligned_cols=19 Identities=5% Similarity=-0.164 Sum_probs=17.5
Q ss_pred cccCccchhcccccccccchh
Q 030413 151 VRCLITRMISWYNVRGARTGI 171 (177)
Q Consensus 151 ~~C~~~~c~~wyH~~C~~~~~ 171 (177)
+.| |+|..|||..|+++..
T Consensus 34 l~C--D~C~~~~H~~Cl~~~~ 52 (71)
T 2ku3_A 34 LFC--DMCNLAVHQECYGVPY 52 (71)
T ss_dssp EEC--SSSCCEEEHHHHTCSS
T ss_pred EEC--CCCCCccccccCCCCc
Confidence 899 9999999999999864
No 42
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=92.22 E-value=0.037 Score=36.03 Aligned_cols=18 Identities=6% Similarity=0.093 Sum_probs=16.7
Q ss_pred cccCccchhcccccccccch
Q 030413 151 VRCLITRMISWYNVRGARTG 170 (177)
Q Consensus 151 ~~C~~~~c~~wyH~~C~~~~ 170 (177)
+.| +.|.++||+.|+++.
T Consensus 42 l~C--D~C~~~yH~~Cl~Pp 59 (77)
T 3shb_A 42 LMC--DECDMAFHIYCLDPP 59 (77)
T ss_dssp EEC--TTTCCEEETTTSSSC
T ss_pred eEe--CCCCCccCcccCCCc
Confidence 999 999999999999954
No 43
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=92.13 E-value=0.031 Score=38.74 Aligned_cols=19 Identities=16% Similarity=0.130 Sum_probs=17.0
Q ss_pred cccCcc--chhcccccccccchh
Q 030413 151 VRCLIT--RMISWYNVRGARTGI 171 (177)
Q Consensus 151 ~~C~~~--~c~~wyH~~C~~~~~ 171 (177)
+.| | +|.+|||+.|+++..
T Consensus 28 l~C--D~~~Cp~~fH~~Cl~L~~ 48 (107)
T 4gne_A 28 VMC--DKKDCPKAYHLLCLNLTQ 48 (107)
T ss_dssp EEC--CSTTCCCEECTGGGTCSS
T ss_pred eEE--CCCCCCcccccccCcCCc
Confidence 999 8 899999999999654
No 44
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=92.02 E-value=0.034 Score=34.76 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=17.3
Q ss_pred cccCccchhcccccccccchh
Q 030413 151 VRCLITRMISWYNVRGARTGI 171 (177)
Q Consensus 151 ~~C~~~~c~~wyH~~C~~~~~ 171 (177)
+.| +.|..+||+.|+++..
T Consensus 24 l~C--d~C~~~~H~~C~~p~l 42 (66)
T 2yt5_A 24 VIC--DKCGQGYHQLCHTPHI 42 (66)
T ss_dssp EEC--SSSCCEEETTTSSSCC
T ss_pred EEC--CCCChHHHhhhCCCcc
Confidence 899 9999999999999754
No 45
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=91.95 E-value=0.043 Score=33.95 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=16.6
Q ss_pred cccCccchhcccccccccch
Q 030413 151 VRCLITRMISWYNVRGARTG 170 (177)
Q Consensus 151 ~~C~~~~c~~wyH~~C~~~~ 170 (177)
+.| |.|..+||+.|+++.
T Consensus 22 l~C--d~C~~~fH~~Cl~pp 39 (61)
T 1mm2_A 22 LCC--DTCPSSYHIHCLNPP 39 (61)
T ss_dssp BCC--SSSCCCBCSSSSSSC
T ss_pred EEc--CCCCHHHcccccCCC
Confidence 999 999999999999954
No 46
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.27 E-value=0.047 Score=35.51 Aligned_cols=18 Identities=11% Similarity=0.170 Sum_probs=16.6
Q ss_pred cccCccchhcccccccccch
Q 030413 151 VRCLITRMISWYNVRGARTG 170 (177)
Q Consensus 151 ~~C~~~~c~~wyH~~C~~~~ 170 (177)
+.| |.|..+||+.|+++.
T Consensus 42 l~C--D~C~~~yH~~Cl~Pp 59 (77)
T 2e6s_A 42 LLC--DECNVAYHIYCLNPP 59 (77)
T ss_dssp EEC--SSSCCEEETTSSSSC
T ss_pred EEc--CCCCccccccccCCC
Confidence 999 999999999999954
No 47
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=90.83 E-value=0.039 Score=36.77 Aligned_cols=19 Identities=5% Similarity=-0.164 Sum_probs=17.5
Q ss_pred cccCccchhcccccccccchh
Q 030413 151 VRCLITRMISWYNVRGARTGI 171 (177)
Q Consensus 151 ~~C~~~~c~~wyH~~C~~~~~ 171 (177)
+.| |.|..|||+.|+++..
T Consensus 43 l~C--D~C~~~fH~~Cl~p~~ 61 (88)
T 2l43_A 43 LFC--DMCNLAVHQECYGVPY 61 (88)
T ss_dssp EEC--SSSCCCCCHHHHTCSS
T ss_pred EEC--CCCCchhhcccCCCCc
Confidence 899 9999999999999863
No 48
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=87.62 E-value=0.12 Score=40.39 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=29.0
Q ss_pred eEEeCCEEEEccCCCCCCCeEEEEeEEEeCC------CCcEEEEEEEEeecc
Q 030413 30 IVRVGDCVLMRPSDTGKPPYVARIEKIESDA------RNNVKVRVRWYYRPE 75 (177)
Q Consensus 30 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~------~g~~~v~v~Wfyrp~ 75 (177)
.|++||.|-....+ ...-+=|+|+.+.+.. ...+..++.|=-.|+
T Consensus 2 ~yki~~~vd~~d~~-~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~ 52 (226)
T 3ask_A 2 LYKVNEYVDARDTN-MGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPE 52 (226)
T ss_dssp CSCTTCEEEEECTT-TCCEEEEEEEEEEECC------CCCEEEEEEETTCGG
T ss_pred ccccCceEEeeecC-CCceeEEEEEEEeccccccCCCCCceEEEeecccCcc
Confidence 57888888888765 3466778888888743 123555665544433
No 49
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=84.83 E-value=0.21 Score=34.67 Aligned_cols=18 Identities=11% Similarity=0.100 Sum_probs=16.6
Q ss_pred cccCccchhcccccccccch
Q 030413 151 VRCLITRMISWYNVRGARTG 170 (177)
Q Consensus 151 ~~C~~~~c~~wyH~~C~~~~ 170 (177)
+.| +.|..+||+.|+++.
T Consensus 74 l~C--d~C~~~yH~~Cl~pp 91 (114)
T 2kwj_A 74 LFC--DDCDRGYHMYCLNPP 91 (114)
T ss_dssp EEC--SSSCCEEETTTSSSC
T ss_pred EEc--CCCCccccccccCCC
Confidence 999 999999999999954
No 50
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=84.51 E-value=0.22 Score=33.01 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=17.8
Q ss_pred cccCccchhcccccccccchhh
Q 030413 151 VRCLITRMISWYNVRGARTGII 172 (177)
Q Consensus 151 ~~C~~~~c~~wyH~~C~~~~~~ 172 (177)
++| +.|...||+.|+++...
T Consensus 34 l~C--D~C~~~yH~~Cl~Ppl~ 53 (88)
T 1wev_A 34 VEC--QECHNLYHQDCHKPQVT 53 (88)
T ss_dssp EEC--SSSCCEEETTTSSSCCC
T ss_pred EEC--CCCCCeEcCccCCCccc
Confidence 899 99999999999997643
No 51
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=82.98 E-value=0.3 Score=33.51 Aligned_cols=18 Identities=11% Similarity=0.065 Sum_probs=16.6
Q ss_pred cccCccchhcccccccccch
Q 030413 151 VRCLITRMISWYNVRGARTG 170 (177)
Q Consensus 151 ~~C~~~~c~~wyH~~C~~~~ 170 (177)
++| +.|.++||..|+++.
T Consensus 70 l~C--d~C~~~yH~~Cl~pp 87 (111)
T 2ysm_A 70 LVC--DTCDKGYHTFCLQPV 87 (111)
T ss_dssp EEC--SSSCCEEEGGGSSSC
T ss_pred eEC--CCCCcHHhHHhcCCc
Confidence 899 999999999999854
No 52
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=82.31 E-value=0.33 Score=33.47 Aligned_cols=19 Identities=5% Similarity=-0.069 Sum_probs=17.1
Q ss_pred cccCccchhcccccccccchh
Q 030413 151 VRCLITRMISWYNVRGARTGI 171 (177)
Q Consensus 151 ~~C~~~~c~~wyH~~C~~~~~ 171 (177)
++| +.|..|||..|+++..
T Consensus 76 ~~C--~~C~~~~H~~C~~~~~ 94 (117)
T 4bbq_A 76 MEC--CICNEIVHPGCLQMDG 94 (117)
T ss_dssp EEE--TTTCCEECGGGCCSCC
T ss_pred EEe--eecCCeEECCCCCCCc
Confidence 789 9999999999998753
No 53
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=80.41 E-value=0.45 Score=32.80 Aligned_cols=18 Identities=6% Similarity=0.113 Sum_probs=16.4
Q ss_pred cccCccchhcccccccccch
Q 030413 151 VRCLITRMISWYNVRGARTG 170 (177)
Q Consensus 151 ~~C~~~~c~~wyH~~C~~~~ 170 (177)
+.| +.|..+||+.|+.+.
T Consensus 78 l~C--d~C~~~yH~~Cl~p~ 95 (112)
T 3v43_A 78 LFC--DSCDRGFHMECCDPP 95 (112)
T ss_dssp EEC--TTTCCEECGGGCSSC
T ss_pred EEc--CCCCCeeecccCCCC
Confidence 799 999999999999764
No 54
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=76.42 E-value=0.69 Score=30.72 Aligned_cols=18 Identities=11% Similarity=0.209 Sum_probs=16.2
Q ss_pred cccCccchhcccccccccch
Q 030413 151 VRCLITRMISWYNVRGARTG 170 (177)
Q Consensus 151 ~~C~~~~c~~wyH~~C~~~~ 170 (177)
+.| |.|..-||+.|+.+.
T Consensus 38 L~C--D~C~~~fH~~Cl~Pp 55 (88)
T 1fp0_A 38 VMC--NQCEFCFHLDCHLPA 55 (88)
T ss_dssp EEC--TTSSCEECTTSSSTT
T ss_pred EEC--CCCCCceecccCCCC
Confidence 899 999999999999654
No 55
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=74.82 E-value=2.7 Score=27.43 Aligned_cols=41 Identities=24% Similarity=0.418 Sum_probs=34.1
Q ss_pred EeCCEEEEccCCCCCCCeEEEEeEEEeCCCCcEEEEEEEEee
Q 030413 32 RVGDCVLMRPSDTGKPPYVARIEKIESDARNNVKVRVRWYYR 73 (177)
Q Consensus 32 ~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~g~~~v~v~Wfyr 73 (177)
++||.+.|.....+.+...|.|+++... +|..=..|+|+--
T Consensus 7 ~vGDrlvv~g~~vg~~~R~GeIvEV~g~-dG~PPY~VRw~dd 47 (83)
T 2a7y_A 7 KVGDYLVVKGTTTERHDQHAEIIEVRSA-DGSPPYVVRWLVN 47 (83)
T ss_dssp CTTEEEEESCTTTSCCEEEEEEEECSCS-SSCSCEEEEETTT
T ss_pred cCCCEEEEecCcCCCCCcEEEEEEEECC-CCCCCEEEEecCC
Confidence 6899999999887889999999999886 5666678999533
No 56
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=72.40 E-value=0.74 Score=31.66 Aligned_cols=18 Identities=6% Similarity=-0.001 Sum_probs=16.5
Q ss_pred cccCccchhcccccccccch
Q 030413 151 VRCLITRMISWYNVRGARTG 170 (177)
Q Consensus 151 ~~C~~~~c~~wyH~~C~~~~ 170 (177)
+.| ++|...||+.|++.+
T Consensus 27 l~C--~~C~~~~H~~Cl~~~ 44 (112)
T 3v43_A 27 ISC--ADCGNSGHPSCLKFS 44 (112)
T ss_dssp EEC--TTTCCEECHHHHTCC
T ss_pred eEh--hhcCCCCCCchhcCC
Confidence 889 999999999999864
No 57
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=70.78 E-value=3.8 Score=24.87 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=24.7
Q ss_pred eEEeCCEEEEccCCCCCCCeEEEEeEEEeC
Q 030413 30 IVRVGDCVLMRPSDTGKPPYVARIEKIESD 59 (177)
Q Consensus 30 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~ 59 (177)
.++.|+.|++.-.| ..+|.|.|+++...
T Consensus 3 ~f~~GedVLarwsD--G~fYlGtI~~V~~~ 30 (58)
T 4hcz_A 3 RLWEGQDVLARWTD--GLLYLGTIKKVDSA 30 (58)
T ss_dssp SCCTTCEEEEECTT--SCEEEEEEEEEETT
T ss_pred ccccCCEEEEEecC--CCEEeEEEEEEecC
Confidence 56899999999887 68999999999876
No 58
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=70.60 E-value=1 Score=30.73 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=17.9
Q ss_pred cccCccchhcccccccccchhh
Q 030413 151 VRCLITRMISWYNVRGARTGII 172 (177)
Q Consensus 151 ~~C~~~~c~~wyH~~C~~~~~~ 172 (177)
+.| +.|.+.||+.|+++...
T Consensus 23 l~C--~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 23 FFC--TTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp EEC--SSSCCEECTTTTTCCCC
T ss_pred eEC--CCCCCCcChHHhCCccc
Confidence 789 99999999999998754
No 59
>3zzs_A Transcription attenuation protein MTRB; transcription regulation, protein engineering; HET: TRP; 1.49A {Geobacillus stearothermophilus} SCOP: b.82.5.1 PDB: 3zzq_A* 3zzl_A*
Probab=69.86 E-value=10 Score=23.25 Aligned_cols=48 Identities=17% Similarity=0.154 Sum_probs=38.2
Q ss_pred EEEEEEeeccccCCcccccCCCCeEEEeCCCcccccceEEeeeEEEee
Q 030413 66 VRVRWYYRPEESLGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSF 113 (177)
Q Consensus 66 v~v~Wfyrp~e~~~~~~~~~~~~ELf~S~~~d~i~~~~I~gkc~V~~~ 113 (177)
+.|.=+-|..|+...-....+..|+......+-.++--|+|++.|++.
T Consensus 13 V~VigltRg~dtkfhhtEkLdkGEVmiaQftehtsaiKiRGkA~i~t~ 60 (65)
T 3zzs_A 13 VNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTR 60 (65)
T ss_dssp EEEEC-CCSSSCCCCCEEEECTTCEEEEECCSSCSEEEEESSEEEEET
T ss_pred eEEEEeeccCCccchhhhccCCCcEEEEEeecceeEEEEeceEEEEee
Confidence 666677788888644333478999999999999999999999999864
No 60
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=68.08 E-value=3.9 Score=26.27 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=25.7
Q ss_pred eeEEeCCEEEEccCCCCCCCeEEEEeEEEeC
Q 030413 29 KIVRVGDCVLMRPSDTGKPPYVARIEKIESD 59 (177)
Q Consensus 29 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~ 59 (177)
..|..|+.|++.-.| ..+|.|.|.++...
T Consensus 25 ~~f~eGeDVLarwsD--GlfYLGTI~kV~~~ 53 (79)
T 2m0o_A 25 PRLWEGQDVLARWTD--GLLYLGTIKKVDSA 53 (79)
T ss_dssp CCCCTTCEEEBCCTT--SCCCEEEEEEEETT
T ss_pred ceeccCCEEEEEecC--CCEEeEEEEEeccC
Confidence 488999999998887 68999999999875
No 61
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=67.90 E-value=6.5 Score=24.51 Aligned_cols=28 Identities=36% Similarity=0.291 Sum_probs=24.4
Q ss_pred eEEeCCEEEEccCCCCCCCeEEEEeEEEeC
Q 030413 30 IVRVGDCVLMRPSDTGKPPYVARIEKIESD 59 (177)
Q Consensus 30 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~ 59 (177)
.+++||.|+..=.| ..+|.|.|.+|.+.
T Consensus 13 ~f~vGddVLA~wtD--Gl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 13 KFEEGQDVLARWSD--GLFYLGTIKKINIL 40 (66)
T ss_dssp CSCTTCEEEEECTT--SCEEEEEEEEEETT
T ss_pred cccCCCEEEEEEcc--CcEEEeEEEEEccC
Confidence 68999999988654 58999999999986
No 62
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=67.63 E-value=1.1 Score=29.44 Aligned_cols=20 Identities=15% Similarity=0.356 Sum_probs=17.5
Q ss_pred cccCccchhcccccccccch
Q 030413 151 VRCLITRMISWYNVRGARTG 170 (177)
Q Consensus 151 ~~C~~~~c~~wyH~~C~~~~ 170 (177)
|+|...+|...||+.|....
T Consensus 32 iqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 32 IQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp EECSCTTTCCEEEHHHHHHH
T ss_pred EecCCCCCCCcCcHHHHHHC
Confidence 99988889999999997643
No 63
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=67.49 E-value=1.3 Score=30.52 Aligned_cols=18 Identities=11% Similarity=-0.066 Sum_probs=16.7
Q ss_pred cccCccchhcccccccccch
Q 030413 151 VRCLITRMISWYNVRGARTG 170 (177)
Q Consensus 151 ~~C~~~~c~~wyH~~C~~~~ 170 (177)
+.| +.|.+.||+.|+++.
T Consensus 24 i~C--~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 24 VSC--ADCGRSGHPTCLQFT 41 (114)
T ss_dssp EEC--SSSCCEECTTTTTCC
T ss_pred eEe--CCCCCccchhhCCCh
Confidence 789 999999999999986
No 64
>1gtf_A Trp RNA-binding attenuation protein (trap); RNA binding protein-RNA complex, transcription attenuation, RNA-binding protein, Trp RNA; HET: TRP; 1.75A {Bacillus stearothermophilus} SCOP: b.82.5.1 PDB: 1c9s_A* 1gtn_A* 1qaw_A* 1utd_A* 1utf_A* 1utv_A* 2zp8_A* 3aqd_A 2zcz_A* 2zp9_A* 2zd0_A* 2ext_A* 2exs_A* 1wap_A*
Probab=63.50 E-value=14 Score=22.98 Aligned_cols=48 Identities=17% Similarity=0.154 Sum_probs=38.8
Q ss_pred EEEEEEeeccccCCcccccCCCCeEEEeCCCcccccceEEeeeEEEee
Q 030413 66 VRVRWYYRPEESLGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSF 113 (177)
Q Consensus 66 v~v~Wfyrp~e~~~~~~~~~~~~ELf~S~~~d~i~~~~I~gkc~V~~~ 113 (177)
+.|.=+-|..||..--....+..||......+--++--|+|++.|++.
T Consensus 17 V~viGLTRG~dTkFhHtEKLDkGEVmiaQFTehTSAiKiRGka~i~t~ 64 (74)
T 1gtf_A 17 VNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTR 64 (74)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTCEEEEECCSSEEEEEEESSEEEEET
T ss_pred eEEEEeccCCcccccchhhcCCCcEEEEEeccceeeEEEeccEEEEee
Confidence 667777888888754333477899999999999999999999999874
No 65
>3zte_A Tryptophan operon RNA-binding attenuation protein; RNA-binding protein, transcription factors, trinucleotide RE; HET: TRP; 2.41A {Bacillus licheniformis} SCOP: b.82.5.1
Probab=62.13 E-value=15 Score=23.30 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=38.1
Q ss_pred EEEEEEeeccccCCcccccCCCCeEEEeCCCcccccceEEeeeEEEee
Q 030413 66 VRVRWYYRPEESLGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSF 113 (177)
Q Consensus 66 v~v~Wfyrp~e~~~~~~~~~~~~ELf~S~~~d~i~~~~I~gkc~V~~~ 113 (177)
+.|.=+-|..|+...-....+..||......+-.++--|+|++.|++.
T Consensus 21 V~VIGltRG~dtkfhHtEkLdkGEVmIaQFTehtsaiKiRGkA~I~t~ 68 (78)
T 3zte_A 21 VNVIGLTRGTDTRFHHSEKLDKGEVMICQFTEHTSAIKVRGEALIQTA 68 (78)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTCEEEEECCSSEEEEEEESSEEEEET
T ss_pred eEEEEeeccCCcccceehccCCCcEEEEEeecceeEEEEeeeEEEEec
Confidence 666667777777543233367899999999999999999999999874
No 66
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=54.42 E-value=8.6 Score=23.86 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=24.6
Q ss_pred eeEEeCCEEEEccCCCCCCCeEEEEeEEEe
Q 030413 29 KIVRVGDCVLMRPSDTGKPPYVARIEKIES 58 (177)
Q Consensus 29 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~ 58 (177)
..|.+||.|+-+=+. +..+|-++|.+|.+
T Consensus 8 ~~~~vgd~VmaRW~G-d~~yYparI~Si~s 36 (66)
T 2l8d_A 8 RKYADGEVVMGRWPG-SVLYYEVQVTSYDD 36 (66)
T ss_dssp SSSCSSCEEEEECTT-SSCEEEEEEEEEET
T ss_pred eEeecCCEEEEEcCC-CccceEEEEEEecc
Confidence 378999999988754 47899999999993
No 67
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.75 E-value=20 Score=22.31 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=25.2
Q ss_pred eeEEeCCEEEEccCCCCCCCeEEEEeEEEeC
Q 030413 29 KIVRVGDCVLMRPSDTGKPPYVARIEKIESD 59 (177)
Q Consensus 29 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~ 59 (177)
..+.+|+.|+..=.| ..+|.|.|.++...
T Consensus 8 ~~f~eGqdVLarWsD--GlfYlGtV~kV~~~ 36 (68)
T 2e5p_A 8 PRLWEGQDVLARWTD--GLLYLGTIKKVDSA 36 (68)
T ss_dssp CCCCTTCEEEEECTT--SSEEEEEEEEEETT
T ss_pred cccccCCEEEEEecC--CcEEEeEEEEEecC
Confidence 478999999998776 68999999999875
No 68
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=52.37 E-value=11 Score=23.55 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=21.8
Q ss_pred eEEeCCEEEEccCCCCCCCeEEEEeEEE
Q 030413 30 IVRVGDCVLMRPSDTGKPPYVARIEKIE 57 (177)
Q Consensus 30 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~ 57 (177)
.|.+|+.|++.-.| ..+|.|.|++..
T Consensus 15 ~~~~geDVL~rw~D--G~fYLGtIVd~~ 40 (69)
T 2xk0_A 15 TYALQEDVFIKCND--GRFYLGTIIDQT 40 (69)
T ss_dssp CCCTTCEEEEECTT--SCEEEEEEEEEC
T ss_pred ccccCCeEEEEecC--CCEEEEEEEecC
Confidence 78999999999776 689999996543
No 69
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=51.61 E-value=11 Score=23.39 Aligned_cols=29 Identities=21% Similarity=0.116 Sum_probs=24.9
Q ss_pred eeEEeCCEEEEccCCCCCCCeEEEEeEEEe
Q 030413 29 KIVRVGDCVLMRPSDTGKPPYVARIEKIES 58 (177)
Q Consensus 29 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~ 58 (177)
..|.+||.|+-+=.. +..+|-+||.+|.+
T Consensus 11 ~~f~vgd~VmaRW~G-d~~yYparItSits 39 (68)
T 2dig_A 11 RKFADGEVVRGRWPG-SSLYYEVEILSHDS 39 (68)
T ss_dssp CSSCSSCEEEEECTT-TCCEEEEEEEEEET
T ss_pred eEeecCCEEEEEccC-CccceEEEEEEecc
Confidence 478999999998774 57899999999993
No 70
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=49.46 E-value=9.7 Score=25.13 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=22.5
Q ss_pred eEEeCCEEEEccCCCCCCCeEEEEeEEE
Q 030413 30 IVRVGDCVLMRPSDTGKPPYVARIEKIE 57 (177)
Q Consensus 30 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~ 57 (177)
.|++||.|...-.. -+.|-|+|.++-
T Consensus 5 ~f~~GdlVwaK~~g--~p~WPa~V~~~~ 30 (94)
T 3qby_A 5 AFKPGDLVFAKMKG--YPHWPARIDDIA 30 (94)
T ss_dssp CCCTTCEEEECCTT--SCCEEEEECCCC
T ss_pred cCccCCEEEEecCC--CCCCCEEEeecc
Confidence 68999999999975 689999998763
No 71
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.01 E-value=8.5 Score=23.14 Aligned_cols=40 Identities=10% Similarity=0.095 Sum_probs=31.0
Q ss_pred eeEEeCCEEEEccCCCCCCCeEEEEeEEEeCCCCcEEEEEEEEee
Q 030413 29 KIVRVGDCVLMRPSDTGKPPYVARIEKIESDARNNVKVRVRWYYR 73 (177)
Q Consensus 29 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~g~~~v~v~Wfyr 73 (177)
..|.+||.|.|..+. -.-..|.|+++..+ .+.+.+.-|-|
T Consensus 6 ~~f~~GD~V~V~~Gp--f~g~~G~V~evd~e---~v~V~v~~fg~ 45 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGE--LINLQGKILSVDGN---KITIMPKHEDL 45 (59)
T ss_dssp SSCCTTSEEEECSST--TTTCEEEECCCBTT---EEEEEECCSSC
T ss_pred ccCCCCCEEEEeecC--CCCCEEEEEEEeCC---EEEEEEEecCC
Confidence 468999999999997 57889999998742 56666655555
No 72
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=48.52 E-value=10 Score=27.29 Aligned_cols=42 Identities=17% Similarity=0.368 Sum_probs=28.6
Q ss_pred eeEEeCCEEEEccCCCCCCCeEEEEeEEEeCC--CCcEEEEEEEEe
Q 030413 29 KIVRVGDCVLMRPSDTGKPPYVARIEKIESDA--RNNVKVRVRWYY 72 (177)
Q Consensus 29 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~--~g~~~v~v~Wfy 72 (177)
..|++||.|...-.. -+.|-|+|.+.-... .....+.|+||-
T Consensus 21 ~~f~~GdlVwaK~~g--~p~WPa~V~~~~~~~~~~~~~~~~V~FfG 64 (153)
T 4fu6_A 21 RDFKPGDLIFAKMKG--YPHWPARVDEVPDGAVKPPTNKLPIFFFG 64 (153)
T ss_dssp GGCCTTCEEEECCTT--SCCEEEEECCCC---CCCCTTCEEEEETT
T ss_pred cCCCCCCEEEEeCCC--CCCCCEEEeEchhhccCCCCCEEEEEecC
Confidence 478999999999975 689999998764432 112345666663
No 73
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=48.45 E-value=13 Score=26.02 Aligned_cols=43 Identities=19% Similarity=0.265 Sum_probs=31.1
Q ss_pred eeEEeCCEEEEccCCCCCCCeEEEEeEEEeCC-----CC-cEEEEEEEEee
Q 030413 29 KIVRVGDCVLMRPSDTGKPPYVARIEKIESDA-----RN-NVKVRVRWYYR 73 (177)
Q Consensus 29 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~-----~g-~~~v~v~Wfyr 73 (177)
..|.+||.|...-.. -+.|-|+|...-... .| ...+.|+||-.
T Consensus 21 ~~~~~GdlVwaK~~g--~P~WPa~V~~~~~~~~~~~~~~~~~~~~V~FFg~ 69 (134)
T 2gfu_A 21 SDFSPGDLVWAKMEG--YPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFDD 69 (134)
T ss_dssp CCCCTTSEEEECCTT--SCCEEEECCCCSSTTCCEEESSSCEEEEEEECSS
T ss_pred CCCCCCCEEEEeecC--CCCCCeeecchhhhhhhhhccCCCceEEEEECCC
Confidence 488999999999885 689999998864321 11 24577777753
No 74
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=47.45 E-value=13 Score=27.10 Aligned_cols=45 Identities=16% Similarity=0.125 Sum_probs=32.2
Q ss_pred eeeEEeCCEEEEccCCCCCCCeEEEEeEEEeCCC---CcEEEEEEEEeec
Q 030413 28 NKIVRVGDCVLMRPSDTGKPPYVARIEKIESDAR---NNVKVRVRWYYRP 74 (177)
Q Consensus 28 ~~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~---g~~~v~v~Wfyrp 74 (177)
+..+.+||.|...-.. -+.|-|+|.+...... ..-.+.|+||=..
T Consensus 14 g~~f~~GDLVWaKvkG--~PwWPa~V~~~~~~~k~~~~~~~~~V~FFG~~ 61 (154)
T 3llr_A 14 GRGFGIGELVWGKLRG--FSWWPGRIVSWWMTGRSRAAEGTRWVMWFGDG 61 (154)
T ss_dssp SCCCCTTCEEEECCTT--SCCEEEEEECGGGTTSCCCCTTEEEEEETTTC
T ss_pred CCCCccCCEEEEecCC--CCCCCEEEecccccccccCCCCEEEEEEeCCC
Confidence 3489999999999875 6999999998764321 1235667777433
No 75
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=45.94 E-value=16 Score=21.51 Aligned_cols=44 Identities=25% Similarity=0.351 Sum_probs=33.4
Q ss_pred eEEeCCEEEEccCCCCCCCeEEEEeEEEeCCCCcEEEEEEEEeeccc
Q 030413 30 IVRVGDCVLMRPSDTGKPPYVARIEKIESDARNNVKVRVRWYYRPEE 76 (177)
Q Consensus 30 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~g~~~v~v~Wfyrp~e 76 (177)
.+.+||.|.|..+. -.-+.|.|.++... .+...+.+..|-|...
T Consensus 4 ~~~~Gd~V~V~~Gp--f~g~~g~v~~v~~~-k~~v~V~v~~~Gr~t~ 47 (58)
T 1nz9_A 4 AFREGDQVRVVSGP--FADFTGTVTEINPE-RGKVKVMVTIFGRETP 47 (58)
T ss_dssp SCCTTCEEEECSGG--GTTCEEEEEEEETT-TTEEEEEEESSSSEEE
T ss_pred ccCCCCEEEEeecC--CCCcEEEEEEEcCC-CCEEEEEEEeCCCEEE
Confidence 56899999999986 46779999998643 4667777777766543
No 76
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=44.08 E-value=7.2 Score=26.61 Aligned_cols=42 Identities=26% Similarity=0.430 Sum_probs=29.2
Q ss_pred eeeEEeCCEEEEccCCCCCCCeEEEEeEEEeCC--CCcEEEEEEEE
Q 030413 28 NKIVRVGDCVLMRPSDTGKPPYVARIEKIESDA--RNNVKVRVRWY 71 (177)
Q Consensus 28 ~~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~--~g~~~v~v~Wf 71 (177)
+..+++||.|...-.. -+.|-|+|.++-+.. .....+.|+||
T Consensus 17 ~~~~~~GdlVwaK~kG--yP~WPa~V~~~p~~~~k~~~~~~~V~FF 60 (110)
T 1ri0_A 17 QKEYKCGDLVFAKMKG--YPHWPARIDEMPEAAVKSTANKYQVFFF 60 (110)
T ss_dssp SSSCCTTCEEEEEETT--EEEEEEEEECCCSSSSCCCSSCEEEEET
T ss_pred cCCCCCCCEEEEEeCC--CCCCCEEEecccHhhcCCCCCEEEEEEe
Confidence 3488999999999875 689999998754321 12234566666
No 77
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=44.01 E-value=34 Score=23.41 Aligned_cols=20 Identities=35% Similarity=0.506 Sum_probs=15.3
Q ss_pred cCceeeEEeCCEEEEccCCC
Q 030413 25 RGTNKIVRVGDCVLMRPSDT 44 (177)
Q Consensus 25 ~g~~~~~~vGD~V~v~~~~~ 44 (177)
+|...+++.||++++.++.+
T Consensus 85 ~g~~~~l~~GD~~~ip~g~~ 104 (123)
T 3bcw_A 85 DGTVHAVKAGDAFIMPEGYT 104 (123)
T ss_dssp TCCEEEEETTCEEEECTTCC
T ss_pred CCeEEEECCCCEEEECCCCe
Confidence 34446889999999998863
No 78
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=43.54 E-value=30 Score=22.71 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=16.6
Q ss_pred EEEc-CceeeEEeCCEEEEccCC
Q 030413 22 YTIR-GTNKIVRVGDCVLMRPSD 43 (177)
Q Consensus 22 ~~~~-g~~~~~~vGD~V~v~~~~ 43 (177)
++++ |....++.||.+++.++.
T Consensus 62 ~~i~~g~~~~l~~GD~i~ip~g~ 84 (101)
T 1o5u_A 62 VTTEDGKKYVIEKGDLVTFPKGL 84 (101)
T ss_dssp EEETTCCEEEEETTCEEEECTTC
T ss_pred EEECCCCEEEECCCCEEEECCCC
Confidence 3565 555778889999998876
No 79
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.02 E-value=13 Score=22.81 Aligned_cols=29 Identities=28% Similarity=0.402 Sum_probs=24.5
Q ss_pred eeEEeCCEEEEccCCCCCCCeEEEEeEEEeC
Q 030413 29 KIVRVGDCVLMRPSDTGKPPYVARIEKIESD 59 (177)
Q Consensus 29 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~ 59 (177)
..+.+||.|+..=.| ..+|.|.|.++...
T Consensus 6 ~~f~eGqdVLarWsD--GlfYlgtV~kV~~~ 34 (63)
T 2e5q_A 6 SGLTEGQYVLCRWTD--GLYYLGKIKRVSSS 34 (63)
T ss_dssp CCCCTTCEEEEECTT--SCEEEEEECCCCST
T ss_pred cceecCCEEEEEecC--CCEEEEEEEEEecC
Confidence 478999999998665 58999999998765
No 80
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=41.01 E-value=22 Score=22.14 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=27.9
Q ss_pred eEEeCCEEEEccCCCCCCCeEEEEeEEEeCCCCcEEEEEEEE
Q 030413 30 IVRVGDCVLMRPSDTGKPPYVARIEKIESDARNNVKVRVRWY 71 (177)
Q Consensus 30 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~g~~~v~v~Wf 71 (177)
.+++||-|+..=++ ..+|-|+|.+|..+ + ...|..+
T Consensus 6 ~~~vGd~vmArW~D--~~yYpA~I~si~~~--~--~Y~V~F~ 41 (67)
T 3p8d_A 6 EFQINEQVLACWSD--CRFYPAKVTAVNKD--G--TYTVKFY 41 (67)
T ss_dssp CCCTTCEEEEECTT--SCEEEEEEEEECTT--S--EEEEEET
T ss_pred ccccCCEEEEEcCC--CCEeeEEEEEECCC--C--eEEEEEe
Confidence 67999999999844 68999999999876 2 2555544
No 81
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=39.16 E-value=6.9 Score=24.57 Aligned_cols=11 Identities=27% Similarity=0.776 Sum_probs=9.1
Q ss_pred cccCcc--chhcccc
Q 030413 151 VRCLIT--RMISWYN 163 (177)
Q Consensus 151 ~~C~~~--~c~~wyH 163 (177)
||| + +|.||=-
T Consensus 19 VQC--d~p~C~KWR~ 31 (69)
T 2e61_A 19 VQC--SFPNCGKWRR 31 (69)
T ss_dssp EEC--SSTTTCCEEE
T ss_pred EEe--CccccCcccC
Confidence 899 7 9999943
No 82
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=38.36 E-value=11 Score=27.04 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=31.0
Q ss_pred eeeEEeCCEEEEccCCCCCCCeEEEEeEEEeCCC---CcEEEEEEEEe
Q 030413 28 NKIVRVGDCVLMRPSDTGKPPYVARIEKIESDAR---NNVKVRVRWYY 72 (177)
Q Consensus 28 ~~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~---g~~~v~v~Wfy 72 (177)
+..+++||.|...-.. -+.|-|+|.+...... ....+.|+||-
T Consensus 9 ~~~~~~GDlVWaKvkG--yPwWPa~V~~~~~~~~~~~~~~~~~V~FFG 54 (147)
T 1khc_A 9 DKEFGIGDLVWGKIKG--FSWWPAMVVSWKATSKRQAMPGMRWVQWFG 54 (147)
T ss_dssp SSSCCTTCEEEEEETT--TEEEEEEEECGGGTTSCCCCTTEEEEEETT
T ss_pred CccCcCCCEEEEecCC--cCCCCEEeccchhhhcccCCCCeEEEEEec
Confidence 3588999999999875 6899999987655321 12356777764
No 83
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=37.69 E-value=31 Score=24.78 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=27.1
Q ss_pred EEEcCceeeEEeCCEEEEccCCCCCCCeEEEEeEEEeCCCCcEEEEEEEEeeccccC
Q 030413 22 YTIRGTNKIVRVGDCVLMRPSDTGKPPYVARIEKIESDARNNVKVRVRWYYRPEESL 78 (177)
Q Consensus 22 ~~~~g~~~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~g~~~v~v~Wfyrp~e~~ 78 (177)
++++|....++.||++++.++.+ .+ |.+. -.+++.|...|...+
T Consensus 97 l~i~g~~~~l~~GD~i~iP~G~~------h~----~~n~---~~a~~l~V~~P~~~~ 140 (151)
T 4axo_A 97 IIIDGRKVSASSGELIFIPKGSK------IQ----FSVP---DYARFIYVTYPADWA 140 (151)
T ss_dssp EEETTEEEEEETTCEEEECTTCE------EE----EEEE---EEEEEEEEEECSCC-
T ss_pred EEECCEEEEEcCCCEEEECCCCE------EE----EEeC---CCEEEEEEECCCCcc
Confidence 45667667889999999998862 11 2221 236666777776444
No 84
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=37.59 E-value=7.6 Score=26.25 Aligned_cols=11 Identities=36% Similarity=0.975 Sum_probs=9.5
Q ss_pred cccCccchhcccc
Q 030413 151 VRCLITRMISWYN 163 (177)
Q Consensus 151 ~~C~~~~c~~wyH 163 (177)
||| +.|.||=-
T Consensus 29 VQC--D~C~KWRr 39 (100)
T 2l7p_A 29 VRC--DDCFKWRR 39 (100)
T ss_dssp EEC--TTTCCEEE
T ss_pred Eee--CCCCcccc
Confidence 999 99999943
No 85
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=37.32 E-value=28 Score=23.50 Aligned_cols=22 Identities=18% Similarity=0.290 Sum_probs=16.9
Q ss_pred EEEcCceeeEEeCCEEEEccCC
Q 030413 22 YTIRGTNKIVRVGDCVLMRPSD 43 (177)
Q Consensus 22 ~~~~g~~~~~~vGD~V~v~~~~ 43 (177)
++++|...+++.||+|++.++.
T Consensus 72 ~~~~g~~~~l~~GD~v~ip~g~ 93 (119)
T 3lwc_A 72 VSTDGETVTAGPGEIVYMPKGE 93 (119)
T ss_dssp EEETTEEEEECTTCEEEECTTC
T ss_pred EEECCEEEEECCCCEEEECCCC
Confidence 3556656778999999998886
No 86
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=36.57 E-value=14 Score=24.89 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=24.7
Q ss_pred CceeeEEeCCEEEEccCCCCCCCeEEEEeEEE
Q 030413 26 GTNKIVRVGDCVLMRPSDTGKPPYVARIEKIE 57 (177)
Q Consensus 26 g~~~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~ 57 (177)
|.|..+++||.|...-.. -+.|-|+|.+..
T Consensus 4 ~~g~~~~~GdlVwaK~~g--~p~WPa~V~~~~ 33 (110)
T 2daq_A 4 GSSGKLHYKQIVWVKLGN--YRWWPAEICNPR 33 (110)
T ss_dssp SCCCSCCSSEEEEEECSS--SCEEEEEECCTT
T ss_pred CCCCCCCCCCEEEEEeCC--CCCCceeeCChh
Confidence 345688999999999876 689999998763
No 87
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=36.16 E-value=45 Score=19.99 Aligned_cols=30 Identities=30% Similarity=0.375 Sum_probs=23.8
Q ss_pred eeEEeCCEEEEccCCCCCCCeEEEEeEEEeC
Q 030413 29 KIVRVGDCVLMRPSDTGKPPYVARIEKIESD 59 (177)
Q Consensus 29 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~ 59 (177)
..+++||.+...=.+ +...|=|+|+++..+
T Consensus 7 ~~~~vGd~c~A~~s~-Dg~wYrA~I~~v~~~ 36 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSE-DGQCYEAEIEEIDEE 36 (64)
T ss_dssp SCCCTTCEEEEECTT-TSSEEEEEEEEEETT
T ss_pred CCCCCCCEEEEEECC-CCCEEEEEEEEEcCC
Confidence 367999999988654 257999999999863
No 88
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=35.77 E-value=35 Score=23.57 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=17.6
Q ss_pred EEEcCceeeEEeCCEEEEccCC
Q 030413 22 YTIRGTNKIVRVGDCVLMRPSD 43 (177)
Q Consensus 22 ~~~~g~~~~~~vGD~V~v~~~~ 43 (177)
++++|...+++.||++++.++.
T Consensus 88 l~~~g~~~~l~~GD~i~~p~g~ 109 (133)
T 2pyt_A 88 VRHEGETMIAKAGDVMFIPKGS 109 (133)
T ss_dssp EEETTEEEEEETTCEEEECTTC
T ss_pred EEECCEEEEECCCcEEEECCCC
Confidence 4566666788999999999886
No 89
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=31.99 E-value=28 Score=23.06 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=15.9
Q ss_pred EEEcCce--eeEEeCCEEEEccCC
Q 030413 22 YTIRGTN--KIVRVGDCVLMRPSD 43 (177)
Q Consensus 22 ~~~~g~~--~~~~vGD~V~v~~~~ 43 (177)
++++|.. ..++.||++++.+..
T Consensus 66 l~~~~~~~~~~l~~Gd~i~ipa~~ 89 (112)
T 2opk_A 66 IECEGDTAPRVMRPGDWLHVPAHC 89 (112)
T ss_dssp EEETTCSSCEEECTTEEEEECTTC
T ss_pred EEECCEEEEEEECCCCEEEECCCC
Confidence 3455544 578889999998875
No 90
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=31.45 E-value=47 Score=21.83 Aligned_cols=28 Identities=11% Similarity=0.065 Sum_probs=23.8
Q ss_pred eEEeCCEEEEccCCCCCCCeEEEEeEEEeCC
Q 030413 30 IVRVGDCVLMRPSDTGKPPYVARIEKIESDA 60 (177)
Q Consensus 30 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~ 60 (177)
.|.+|+.|++..+ ...+-|+|+++....
T Consensus 23 ~~~vG~kv~v~~~---~~~y~AkIl~ir~~~ 50 (92)
T 2ro0_A 23 DIIIKCQCWVQKN---DEERLAEILSINTRK 50 (92)
T ss_dssp SCCTTCEEEEEET---TEEEEEEEEEEECSS
T ss_pred cccCCCEEEEEEC---CEEEEEEEEEEEEcC
Confidence 6899999999964 479999999999853
No 91
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=31.25 E-value=1.3e+02 Score=21.35 Aligned_cols=46 Identities=9% Similarity=0.039 Sum_probs=22.9
Q ss_pred EEcCceeeEEeCCEEEEccCCCCCCCeEEEEeEEEeCCCCcEEEEEEEEeeccccCCc
Q 030413 23 TIRGTNKIVRVGDCVLMRPSDTGKPPYVARIEKIESDARNNVKVRVRWYYRPEESLGG 80 (177)
Q Consensus 23 ~~~g~~~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~g~~~v~v~Wfyrp~e~~~~ 80 (177)
.++|....+..||++++.++.+ . .+....+ .. + +.|+..|....++
T Consensus 140 ~~~~~~~~l~~GD~i~i~~~~~----H-----~~~n~~~-~~-~-~l~v~~~~~~~~~ 185 (192)
T 1y9q_A 140 FFDEQWHELQQGEHIRFFSDQP----H-----GYAAVTE-KA-V-FQNIVAYPRREGG 185 (192)
T ss_dssp EETTEEEEECTTCEEEEECSSS----E-----EEEESSS-CE-E-EEEEEECCC----
T ss_pred EECCEEEEeCCCCEEEEcCCCC----e-----EeECCCC-Cc-E-EEEEEecCcccCC
Confidence 4444445677888888877652 1 1222222 22 3 6777766655444
No 92
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=31.14 E-value=45 Score=21.55 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=16.1
Q ss_pred EEcCceeeEEeCCEEEEccCCC
Q 030413 23 TIRGTNKIVRVGDCVLMRPSDT 44 (177)
Q Consensus 23 ~~~g~~~~~~vGD~V~v~~~~~ 44 (177)
.++|....++.||.+++.++.+
T Consensus 72 ~i~~~~~~l~~Gd~i~i~~~~~ 93 (114)
T 2ozj_A 72 TFDDQKIDLVPEDVLMVPAHKI 93 (114)
T ss_dssp EETTEEEEECTTCEEEECTTCC
T ss_pred EECCEEEEecCCCEEEECCCCc
Confidence 4555556778899999888863
No 93
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=30.67 E-value=84 Score=21.03 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=23.4
Q ss_pred eEEeCCEEEEccCCCCCCCeEEEEeEEEeC
Q 030413 30 IVRVGDCVLMRPSDTGKPPYVARIEKIESD 59 (177)
Q Consensus 30 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~ 59 (177)
.|.+|+-|++..+ ...|-|+|+++...
T Consensus 22 ~f~vGekVl~~~~---~~~YeAkIl~v~~~ 48 (102)
T 2f5k_A 22 KFQEGERVLCFHG---PLLYEAKCVKVAIK 48 (102)
T ss_dssp SCCTTCEEEEESS---SSEEEEEEEEEEEE
T ss_pred ccCCCCEEEEEEC---CEEEEEEEEEEEEc
Confidence 6899999999884 47999999999974
No 94
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=30.37 E-value=53 Score=23.01 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=26.3
Q ss_pred eeEEeCCEEEEccCCCCCCCeEEEEeEEEeCC-CCc
Q 030413 29 KIVRVGDCVLMRPSDTGKPPYVARIEKIESDA-RNN 63 (177)
Q Consensus 29 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~-~g~ 63 (177)
..|.+|+.|++.-.+ ...|-|+|+++.... +|.
T Consensus 11 ~~~~vGe~v~~~~~d--~~~y~AkIl~i~~~~~~~~ 44 (133)
T 1wgs_A 11 VTVEIGETYLCRRPD--STWHSAEVIQSRVNDQEGR 44 (133)
T ss_dssp CCCCTTSEEEEEETT--TEEEEEEEEEEEEETTTTE
T ss_pred cccCCCCEEEEEeCC--CCEEEEEEEEEEeccCCCc
Confidence 368999999999864 479999999998753 344
No 95
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=30.13 E-value=37 Score=24.00 Aligned_cols=44 Identities=20% Similarity=0.142 Sum_probs=34.6
Q ss_pred eeEEeCCEEEEccCCCCCCCeEEEEeEEEeCCCCcEEEEEEEEeecc
Q 030413 29 KIVRVGDCVLMRPSDTGKPPYVARIEKIESDARNNVKVRVRWYYRPE 75 (177)
Q Consensus 29 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~g~~~v~v~Wfyrp~ 75 (177)
..+.+||.|.|..+. -.-..|+|.++..+ .+...+.+.-|-|+.
T Consensus 90 ~~~~~Gd~VrI~~Gp--f~g~~g~V~~vd~~-k~~v~V~v~~~gr~t 133 (152)
T 3p8b_B 90 SGLEPGDLVEVIAGP--FKGQKAKVVKIDES-KDEVVVQFIDAIVPI 133 (152)
T ss_dssp TTCCTTCEEEECSST--TTTCEEEEEEEETT-TTEEEEEESSCSSCC
T ss_pred ccCCCCCEEEEeeec--CCCCEEEEEEEeCC-CCEEEEEEEecceeE
Confidence 367999999999986 46779999999875 466778877776643
No 96
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=29.88 E-value=56 Score=21.61 Aligned_cols=28 Identities=11% Similarity=0.065 Sum_probs=23.6
Q ss_pred eEEeCCEEEEccCCCCCCCeEEEEeEEEeCC
Q 030413 30 IVRVGDCVLMRPSDTGKPPYVARIEKIESDA 60 (177)
Q Consensus 30 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~ 60 (177)
.|.+|+.|++..+ ...+-|+|+++....
T Consensus 25 ~~~vG~kv~v~~~---~~~yeAeIl~ir~~~ 52 (94)
T 2rnz_A 25 DIIIKCQCWVQKN---DEERLAEILSINTRK 52 (94)
T ss_dssp GCCTTEEEEEECS---SCEEEEEEEEEECSS
T ss_pred cccCCCEEEEEEC---CEEEEEEEEEEEEcC
Confidence 6789999999963 479999999999853
No 97
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=29.42 E-value=9.8 Score=26.28 Aligned_cols=11 Identities=18% Similarity=0.640 Sum_probs=9.0
Q ss_pred hcccccccccc
Q 030413 159 ISWYNVRGART 169 (177)
Q Consensus 159 ~~wyH~~C~~~ 169 (177)
..|||.+|.-.
T Consensus 48 ~~W~H~~Cf~~ 58 (117)
T 1uw0_A 48 KEWYHIKCMFE 58 (117)
T ss_dssp CCBCCHHHHHH
T ss_pred CeeECcccchh
Confidence 56999999864
No 98
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=29.30 E-value=11 Score=25.50 Aligned_cols=11 Identities=18% Similarity=0.441 Sum_probs=8.8
Q ss_pred hcccccccccc
Q 030413 159 ISWYNVRGART 169 (177)
Q Consensus 159 ~~wyH~~C~~~ 169 (177)
..|||.+|.-.
T Consensus 56 ~~W~H~~Cf~~ 66 (106)
T 2dmj_A 56 PHWYHFSCFWK 66 (106)
T ss_dssp EEEEETTHHHH
T ss_pred CEeECcCccch
Confidence 46999999753
No 99
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=28.81 E-value=90 Score=18.17 Aligned_cols=28 Identities=29% Similarity=0.172 Sum_probs=21.7
Q ss_pred eEEeCCEEEEccCCCCCCCeEEEEeEEEe
Q 030413 30 IVRVGDCVLMRPSDTGKPPYVARIEKIES 58 (177)
Q Consensus 30 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~ 58 (177)
.+++||.+...=.+ +...|=|+|+++..
T Consensus 3 ~~~~G~~c~A~~s~-Dg~wYrA~I~~i~~ 30 (59)
T 1mhn_A 3 QWKVGDKCSAIWSE-DGCIYPATIASIDF 30 (59)
T ss_dssp CCCTTCEEEEECTT-TSCEEEEEEEEEET
T ss_pred cCCcCCEEEEEECC-CCCEEEEEEEEEcC
Confidence 57899998887653 25789999999954
No 100
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=27.82 E-value=55 Score=23.82 Aligned_cols=22 Identities=9% Similarity=0.058 Sum_probs=14.3
Q ss_pred EEEcCceeeEEeCCEEEEccCC
Q 030413 22 YTIRGTNKIVRVGDCVLMRPSD 43 (177)
Q Consensus 22 ~~~~g~~~~~~vGD~V~v~~~~ 43 (177)
++++|...++..||++++.+..
T Consensus 123 vtl~g~~~~L~~Gds~~iP~g~ 144 (166)
T 2vpv_A 123 VTVCKNKFLSVKGSTFQIPAFN 144 (166)
T ss_dssp EEETTEEEEEETTCEEEECTTC
T ss_pred EEECCEEEEEcCCCEEEECCCC
Confidence 3555555566777888777765
No 101
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=27.62 E-value=28 Score=23.40 Aligned_cols=42 Identities=19% Similarity=0.288 Sum_probs=29.1
Q ss_pred eeEEeCCEEEEccCCCCCCCeEEEEeEEEeCC-------CCcEEEEEEEEe
Q 030413 29 KIVRVGDCVLMRPSDTGKPPYVARIEKIESDA-------RNNVKVRVRWYY 72 (177)
Q Consensus 29 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~-------~g~~~v~v~Wfy 72 (177)
..+++||.|...-.. -+.|-|+|.+--.-+ .+...+.|++|-
T Consensus 4 ~~~~~GdlVwaK~~g--yP~WPa~V~~~~~~p~~v~~~~~~~~~~~V~FFg 52 (108)
T 2l89_A 4 DRLNFGDRILVKAPG--YPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFP 52 (108)
T ss_dssp CCCCTTEEEEEECSS--SCEEEEEEEEEEEEESSSCSSSCEEEEEEEEETT
T ss_pred CcccCCCEEEEEeCC--cCCCceEecCcccCcHHHhhccCCCCeEEEEECC
Confidence 478999999999885 689999997643311 123456666553
No 102
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=26.69 E-value=1e+02 Score=21.01 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=24.7
Q ss_pred eeEEeCCEEEEccCCC--CCCCeEEEEeEEEeCC
Q 030413 29 KIVRVGDCVLMRPSDT--GKPPYVARIEKIESDA 60 (177)
Q Consensus 29 ~~~~vGD~V~v~~~~~--~~~~~Ig~I~~i~~~~ 60 (177)
..|.+|+-|++.-.++ +...|=|+|+++....
T Consensus 18 ~~F~~gEkVLc~h~d~~kg~llYeAKIl~v~~~~ 51 (110)
T 3oa6_A 18 FKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGK 51 (110)
T ss_dssp CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEE
T ss_pred cccCCCCEEEEEecCCCCCcccEEEEEEEEEecc
Confidence 4789999999987653 2356899999997643
No 103
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=26.50 E-value=11 Score=26.05 Aligned_cols=11 Identities=9% Similarity=0.154 Sum_probs=8.7
Q ss_pred hcccccccccc
Q 030413 159 ISWYNVRGART 169 (177)
Q Consensus 159 ~~wyH~~C~~~ 169 (177)
..|||.+|.-.
T Consensus 51 ~~W~H~~Cf~~ 61 (114)
T 1v9x_A 51 PMWNHASCILK 61 (114)
T ss_dssp CEEEEHHHHHT
T ss_pred ceeECccccch
Confidence 56999999753
No 104
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=26.44 E-value=59 Score=20.07 Aligned_cols=21 Identities=5% Similarity=0.140 Sum_probs=13.7
Q ss_pred EEcCceeeEEeCCEEEEccCC
Q 030413 23 TIRGTNKIVRVGDCVLMRPSD 43 (177)
Q Consensus 23 ~~~g~~~~~~vGD~V~v~~~~ 43 (177)
.++|....+..||.+++.++.
T Consensus 63 ~~~~~~~~l~~Gd~~~ip~~~ 83 (105)
T 1v70_A 63 RVGEEEALLAPGMAAFAPAGA 83 (105)
T ss_dssp EETTEEEEECTTCEEEECTTS
T ss_pred EECCEEEEeCCCCEEEECCCC
Confidence 344444567788888877765
No 105
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=26.08 E-value=1e+02 Score=20.58 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=28.1
Q ss_pred EcCceeeEEeCCEEEEccCCC--CCCCeEEEEeEEEeCC
Q 030413 24 IRGTNKIVRVGDCVLMRPSDT--GKPPYVARIEKIESDA 60 (177)
Q Consensus 24 ~~g~~~~~~vGD~V~v~~~~~--~~~~~Ig~I~~i~~~~ 60 (177)
+.|....|.+|+-|++.-+++ +...|=|+|+++....
T Consensus 13 ~~~~~~~f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~ 51 (101)
T 3m9q_A 13 LRDETPLFHKGEIVLCYEPDKSKARVLYTSKVLNVFERR 51 (101)
T ss_dssp CCCCCCCCCTTCEEEEECCCTTSCCCEEEEEEEEEEEEE
T ss_pred hccCCCcccCCCEEEEEecCCCCCCcceEeEEEEEEecC
Confidence 444446899999999998642 2468999999998853
No 106
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=25.38 E-value=11 Score=27.07 Aligned_cols=19 Identities=5% Similarity=0.102 Sum_probs=17.3
Q ss_pred cccCccchhcccccccccchh
Q 030413 151 VRCLITRMISWYNVRGARTGI 171 (177)
Q Consensus 151 ~~C~~~~c~~wyH~~C~~~~~ 171 (177)
+.| ++|-.=||..|+.++.
T Consensus 76 lcC--D~Cpr~Fh~~Cl~p~l 94 (142)
T 2lbm_A 76 ICC--DFCHNAFCKKCILRNL 94 (142)
T ss_dssp EEC--SSSCCEEEHHHHHHHT
T ss_pred EeC--CCCCCeeeHhhcCCCC
Confidence 999 9999999999999665
No 107
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=25.11 E-value=72 Score=20.40 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=14.5
Q ss_pred EEcCceeeEEeCCEEEEccCC
Q 030413 23 TIRGTNKIVRVGDCVLMRPSD 43 (177)
Q Consensus 23 ~~~g~~~~~~vGD~V~v~~~~ 43 (177)
.++|....+..||.+++.++.
T Consensus 74 ~~~~~~~~l~~Gd~~~ip~~~ 94 (115)
T 1yhf_A 74 TIDQETYRVAEGQTIVMPAGI 94 (115)
T ss_dssp EETTEEEEEETTCEEEECTTS
T ss_pred EECCEEEEECCCCEEEECCCC
Confidence 344444667888888888775
No 108
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=24.53 E-value=69 Score=22.63 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=16.5
Q ss_pred EEEcCceeeEEeCCEEEEccCC
Q 030413 22 YTIRGTNKIVRVGDCVLMRPSD 43 (177)
Q Consensus 22 ~~~~g~~~~~~vGD~V~v~~~~ 43 (177)
++++|....+..||+|++.+..
T Consensus 77 v~v~g~~~~l~~Gd~i~ip~~~ 98 (156)
T 3kgz_A 77 CLVGETISDVAQGDLVFIPPMT 98 (156)
T ss_dssp EEETTEEEEEETTCEEEECTTC
T ss_pred EEECCEEEEeCCCCEEEECCCC
Confidence 3566665677889999988876
No 109
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=24.15 E-value=71 Score=20.48 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=14.7
Q ss_pred EEcCceeeEEeCCEEEEccCC
Q 030413 23 TIRGTNKIVRVGDCVLMRPSD 43 (177)
Q Consensus 23 ~~~g~~~~~~vGD~V~v~~~~ 43 (177)
.++|....+..||.+++.++.
T Consensus 68 ~~~~~~~~l~~Gd~~~ip~~~ 88 (116)
T 2pfw_A 68 NVDGVIKVLTAGDSFFVPPHV 88 (116)
T ss_dssp EETTEEEEECTTCEEEECTTC
T ss_pred EECCEEEEeCCCCEEEECcCC
Confidence 445555677888888888775
No 110
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=24.10 E-value=59 Score=21.14 Aligned_cols=37 Identities=24% Similarity=0.370 Sum_probs=28.3
Q ss_pred eeEEeCCEEEEccCCCCCCCeEEEEeEEEeCCCCcEEEEEEEE
Q 030413 29 KIVRVGDCVLMRPSDTGKPPYVARIEKIESDARNNVKVRVRWY 71 (177)
Q Consensus 29 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~g~~~v~v~Wf 71 (177)
..+++||-|+-.=+| ..+|-|+|.+|-.+ + ...|.++
T Consensus 20 ~~f~vGd~VlArW~D--~~yYPAkI~sV~~~--~--~YtV~F~ 56 (85)
T 3qii_A 20 SEFQINEQVLACWSD--CRFYPAKVTAVNKD--G--TYTVKFY 56 (85)
T ss_dssp -CCCTTCEEEEECTT--SCEEEEEEEEECTT--S--EEEEEET
T ss_pred cccccCCEEEEEeCC--CCEeeEEEEEECCC--C--eEEEEEe
Confidence 588999999998854 68999999999876 2 2555543
No 111
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.95 E-value=14 Score=26.18 Aligned_cols=11 Identities=18% Similarity=0.311 Sum_probs=8.8
Q ss_pred hcccccccccc
Q 030413 159 ISWYNVRGART 169 (177)
Q Consensus 159 ~~wyH~~C~~~ 169 (177)
..|||.+|.-.
T Consensus 60 ~~W~H~~Cf~~ 70 (134)
T 2cs2_A 60 DRWYHPGCFVK 70 (134)
T ss_dssp EEEECHHHHHH
T ss_pred ceeECcCcChh
Confidence 46999999853
No 112
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=23.90 E-value=46 Score=20.98 Aligned_cols=30 Identities=23% Similarity=0.204 Sum_probs=23.5
Q ss_pred eEEeCCEEEEccCC-CCCCCeEEEEeEEEeC
Q 030413 30 IVRVGDCVLMRPSD-TGKPPYVARIEKIESD 59 (177)
Q Consensus 30 ~~~vGD~V~v~~~~-~~~~~~Ig~I~~i~~~ 59 (177)
.|.+|+.|++..++ .....|-|+|+++...
T Consensus 5 ~~~vGekV~~~~~d~k~~~~y~AkIl~i~~~ 35 (76)
T 2lcc_A 5 PCLTGTKVKVKYGRGKTQKIYEASIKSTEID 35 (76)
T ss_dssp CSSTTCEEEEEEEETTEEEEEEEEEEEEEEE
T ss_pred ccCCCCEEEEEeCCCCCCCEEEEEEEEEEcc
Confidence 67899999998763 1236899999998864
No 113
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.64 E-value=58 Score=20.40 Aligned_cols=28 Identities=36% Similarity=0.373 Sum_probs=23.6
Q ss_pred eeEEeCCEEEEccCCCCCCCeEEEEeEEEe
Q 030413 29 KIVRVGDCVLMRPSDTGKPPYVARIEKIES 58 (177)
Q Consensus 29 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~ 58 (177)
..+++||.|+-.=.| ...|-|+|+++..
T Consensus 8 ~~~kvGd~clA~wsD--g~~Y~A~I~~v~~ 35 (74)
T 2equ_A 8 FDFKAGEEVLARWTD--CRYYPAKIEAINK 35 (74)
T ss_dssp CCCCTTCEEEEECSS--SSEEEEEEEEEST
T ss_pred CCCCCCCEEEEECCC--CCEEEEEEEEECC
Confidence 368999999998773 6899999999964
No 114
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=23.62 E-value=88 Score=21.61 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=24.3
Q ss_pred eeEEeCCEEEEccCCCCCCCeEEEEeEEEeC
Q 030413 29 KIVRVGDCVLMRPSDTGKPPYVARIEKIESD 59 (177)
Q Consensus 29 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~ 59 (177)
..++.||.|.|.++.+ .=-.|+|.++...
T Consensus 41 ~~IkkGD~V~Vi~G~d--KGk~GkV~~V~~k 69 (120)
T 1vq8_T 41 VRVNAGDTVEVLRGDF--AGEEGEVINVDLD 69 (120)
T ss_dssp EECCTTCEEEECSSTT--TTCEEEEEEEETT
T ss_pred ccccCCCEEEEEecCC--CCCEEEEEEEECC
Confidence 5789999999999873 4569999999865
No 115
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=23.59 E-value=55 Score=21.52 Aligned_cols=22 Identities=14% Similarity=0.363 Sum_probs=15.7
Q ss_pred EEEcCceeeEEeCCEEEEccCC
Q 030413 22 YTIRGTNKIVRVGDCVLMRPSD 43 (177)
Q Consensus 22 ~~~~g~~~~~~vGD~V~v~~~~ 43 (177)
+.++|....++.||.+++.+..
T Consensus 69 ~~i~~~~~~l~~Gd~i~ip~~~ 90 (114)
T 3fjs_A 69 IGVDGAQRRLHQGDLLYLGAGA 90 (114)
T ss_dssp EEETTEEEEECTTEEEEECTTC
T ss_pred EEECCEEEEECCCCEEEECCCC
Confidence 3555555677888888888875
No 116
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=23.49 E-value=41 Score=24.37 Aligned_cols=21 Identities=10% Similarity=0.050 Sum_probs=15.4
Q ss_pred EEcCceeeEEeCCEEEEccCC
Q 030413 23 TIRGTNKIVRVGDCVLMRPSD 43 (177)
Q Consensus 23 ~~~g~~~~~~vGD~V~v~~~~ 43 (177)
.++|....++.||.|+|.++.
T Consensus 82 ~idge~~~l~~GD~v~IPpg~ 102 (157)
T 4h7l_A 82 ELNGQSYPLTKLLAISIPPLV 102 (157)
T ss_dssp EETTEEEECCTTEEEEECTTC
T ss_pred EECCEEEEeCCCCEEEECCCC
Confidence 344544567889999998886
No 117
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=23.33 E-value=15 Score=25.21 Aligned_cols=12 Identities=17% Similarity=0.296 Sum_probs=9.5
Q ss_pred hcccccccccch
Q 030413 159 ISWYNVRGARTG 170 (177)
Q Consensus 159 ~~wyH~~C~~~~ 170 (177)
..|||.+|.-..
T Consensus 52 ~~W~H~~Cf~~~ 63 (111)
T 3odc_A 52 DRWYHPGCFVKN 63 (111)
T ss_dssp EEEECHHHHHHT
T ss_pred ceeEChhhccch
Confidence 479999998654
No 118
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=23.22 E-value=1.3e+02 Score=18.93 Aligned_cols=37 Identities=24% Similarity=0.215 Sum_probs=25.6
Q ss_pred eEEEEcCceeeEEeCCEEEEccCCCCCCCeEEEEeEEEeCCCC
Q 030413 20 ESYTIRGTNKIVRVGDCVLMRPSDTGKPPYVARIEKIESDARN 62 (177)
Q Consensus 20 ~~~~~~g~~~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~~g 62 (177)
-.+.++. .+.+||.|-+..++ .+..-..|.+|+. .+|
T Consensus 22 ~~ie~rN---~f~~GD~iEi~~P~--g~~~~~~v~~m~d-~~G 58 (89)
T 4he6_A 22 ATVQQRN---HFRPGDEVEFFGPE--IENFTQVIEKIWD-EDG 58 (89)
T ss_dssp EEEEESS---CBCTTCEEEEESTT--SCCEEEECCCEEE-TTS
T ss_pred EEEEEcC---CcCCCCEEEEEcCC--CCcEEEEeHHeEc-CCC
Confidence 3455654 78999999887765 3466677888875 344
No 119
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=22.91 E-value=59 Score=20.73 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=15.9
Q ss_pred EEEcC-ceeeEEeCCEEEEccCC
Q 030413 22 YTIRG-TNKIVRVGDCVLMRPSD 43 (177)
Q Consensus 22 ~~~~g-~~~~~~vGD~V~v~~~~ 43 (177)
+.++| ....++.||.+++.++.
T Consensus 61 ~~~~~~~~~~l~~Gd~~~ip~~~ 83 (107)
T 2i45_A 61 VDFADGGSMTIREGEMAVVPKSV 83 (107)
T ss_dssp EEETTSCEEEECTTEEEEECTTC
T ss_pred EEECCCcEEEECCCCEEEECCCC
Confidence 35555 55677888888888876
No 120
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=22.77 E-value=61 Score=20.19 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=22.7
Q ss_pred eeEEeCCEEEEccCCCCCCCeEEEEeEEEeC
Q 030413 29 KIVRVGDCVLMRPSDTGKPPYVARIEKIESD 59 (177)
Q Consensus 29 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~ 59 (177)
+.|++||.|-|..+. -.--.|.|.++..+
T Consensus 16 K~F~~GDHVkVi~G~--~~getGlVV~v~~d 44 (69)
T 2do3_A 16 KYFKMGDHVKVIAGR--FEGDTGLIVRVEEN 44 (69)
T ss_dssp SSCCTTCEEEESSST--TTTCEEEEEEECSS
T ss_pred eeccCCCeEEEeccE--EcCceEEEEEEeCC
Confidence 578999999999985 34557888888755
No 121
>1e0b_A SWI6 protein; chromatin-binding, chromodomain, shadow, heterochromatin; HET: 1PG; 1.9A {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=22.76 E-value=1.4e+02 Score=18.30 Aligned_cols=25 Identities=20% Similarity=0.482 Sum_probs=21.2
Q ss_pred CCeEEEEeEEEeCCCCcEEEEEEEE
Q 030413 47 PPYVARIEKIESDARNNVKVRVRWY 71 (177)
Q Consensus 47 ~~~Ig~I~~i~~~~~g~~~v~v~Wf 71 (177)
...|-+|+.+..+.+|+.++-++|=
T Consensus 10 E~~Ve~I~g~~~~~~g~L~flikwk 34 (68)
T 1e0b_A 10 EDLVSSIDTIERKDDGTLEIYLTWK 34 (68)
T ss_dssp TTTEEEEEEEEECTTSCEEEEEEET
T ss_pred hhheeEEEEEEECCCCEEEEEEEEC
Confidence 4568899999987789999999994
No 122
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.73 E-value=1e+02 Score=21.24 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=24.0
Q ss_pred eeEEeCCEEEEccCCCCCCCeEEEEeEEEeC
Q 030413 29 KIVRVGDCVLMRPSDTGKPPYVARIEKIESD 59 (177)
Q Consensus 29 ~~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~ 59 (177)
..++.||.|.|.++.+ .=-.|+|.++...
T Consensus 44 ~~IkkGD~V~Vi~Gkd--KGk~GkV~~V~~k 72 (121)
T 3j21_U 44 LPVRVGDKVRIMRGDY--KGHEGKVVEVDLK 72 (121)
T ss_dssp EECCSSSEEEECSSSC--SSEEEEEEEEETT
T ss_pred cccccCCEEEEeecCC--CCcEeEEEEEEec
Confidence 5778999999999973 4557999999875
No 123
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=22.58 E-value=72 Score=20.95 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=14.6
Q ss_pred EEcCceeeEEeCCEEEEccCC
Q 030413 23 TIRGTNKIVRVGDCVLMRPSD 43 (177)
Q Consensus 23 ~~~g~~~~~~vGD~V~v~~~~ 43 (177)
.++|....++.||.+++.+..
T Consensus 62 ~i~~~~~~l~~Gd~i~i~~~~ 82 (125)
T 3cew_A 62 TIDGEKIELQAGDWLRIAPDG 82 (125)
T ss_dssp EETTEEEEEETTEEEEECTTC
T ss_pred EECCEEEEeCCCCEEEECCCC
Confidence 444555677888888887775
No 124
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}
Probab=22.34 E-value=27 Score=21.70 Aligned_cols=25 Identities=8% Similarity=0.073 Sum_probs=16.1
Q ss_pred eeeEEeCCEEEEccCCCCCCCeEEE
Q 030413 28 NKIVRVGDCVLMRPSDTGKPPYVAR 52 (177)
Q Consensus 28 ~~~~~vGD~V~v~~~~~~~~~~Ig~ 52 (177)
...++.||.|.|....++..-|.|+
T Consensus 26 eLsf~~Gd~i~v~~~~~~~gWw~g~ 50 (80)
T 2i0n_A 26 LLPFKRNDIITITFKDQENKWFMGQ 50 (80)
T ss_dssp SCCBCSSEEEEEEEESSSSSEEEEE
T ss_pred CcCCCCCCEEEEEEecCCCCEEEEE
Confidence 3567888888888765322255664
No 125
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=22.23 E-value=16 Score=25.31 Aligned_cols=11 Identities=18% Similarity=0.441 Sum_probs=8.8
Q ss_pred hcccccccccc
Q 030413 159 ISWYNVRGART 169 (177)
Q Consensus 159 ~~wyH~~C~~~ 169 (177)
..|||.+|.-.
T Consensus 69 ~~WyH~~Cf~~ 79 (116)
T 3od8_A 69 PHWYHFSCFWK 79 (116)
T ss_dssp EEEEEHHHHHH
T ss_pred CeeECCccChh
Confidence 46999999764
No 126
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=22.15 E-value=67 Score=21.03 Aligned_cols=19 Identities=21% Similarity=0.538 Sum_probs=13.6
Q ss_pred cCceeeEEeCCEEEEccCC
Q 030413 25 RGTNKIVRVGDCVLMRPSD 43 (177)
Q Consensus 25 ~g~~~~~~vGD~V~v~~~~ 43 (177)
+|....++.||.+++.++.
T Consensus 77 ~~~~~~l~~Gd~~~i~~~~ 95 (125)
T 3h8u_A 77 NGIVTHLKAGDIAIAKPGQ 95 (125)
T ss_dssp TTCEEEEETTEEEEECTTC
T ss_pred CCeEEEeCCCCEEEECCCC
Confidence 4444567788888888775
No 127
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=22.13 E-value=1.6e+02 Score=18.60 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=22.5
Q ss_pred CCCCeEEEEeEEEeCCCCcEEEEEEEEeec
Q 030413 45 GKPPYVARIEKIESDARNNVKVRVRWYYRP 74 (177)
Q Consensus 45 ~~~~~Ig~I~~i~~~~~g~~~v~v~Wfyrp 74 (177)
++.+-|=+|+.-....+|.....|.|--.|
T Consensus 21 ~e~yeVE~Ild~R~~~~g~~~YlVKWkGy~ 50 (81)
T 4hae_A 21 GDLYEVERIVDKRKNKKGKWEYLIRWKGYG 50 (81)
T ss_dssp SCEEEEEEEEEEEECTTSCEEEEEEETTCC
T ss_pred CCEEEEEEEEEeEECCCCeEEEEEEECCCC
Confidence 356778888877777788899999996444
No 128
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=21.87 E-value=63 Score=20.39 Aligned_cols=20 Identities=10% Similarity=0.409 Sum_probs=12.2
Q ss_pred EcCceeeEEeCCEEEEccCC
Q 030413 24 IRGTNKIVRVGDCVLMRPSD 43 (177)
Q Consensus 24 ~~g~~~~~~vGD~V~v~~~~ 43 (177)
+++....+..||.+++.++.
T Consensus 59 ~~~~~~~l~~Gd~~~i~~~~ 78 (113)
T 2gu9_A 59 VDGHTQALQAGSLIAIERGQ 78 (113)
T ss_dssp ETTEEEEECTTEEEEECTTC
T ss_pred ECCEEEEeCCCCEEEECCCC
Confidence 34444556677777777664
No 129
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=21.78 E-value=1.4e+02 Score=18.49 Aligned_cols=30 Identities=10% Similarity=-0.051 Sum_probs=22.8
Q ss_pred CCCeEEEEeEEEeCCCCcEEEEEEEEeecc
Q 030413 46 KPPYVARIEKIESDARNNVKVRVRWYYRPE 75 (177)
Q Consensus 46 ~~~~Ig~I~~i~~~~~g~~~v~v~Wfyrp~ 75 (177)
+.+-|=+|+.-....+|.....|.|--.|.
T Consensus 20 e~yeVE~Il~~r~~~~g~~~YlVkWkGy~~ 49 (75)
T 2rsn_A 20 DVYEVEDILADRVNKNGINEYYIKWAGYDW 49 (75)
T ss_dssp GCEEEEEEEEEEECSSSCEEEEEEEESSCG
T ss_pred ceEEEEEEEEEEEcCCCcEEEEEEECCCCC
Confidence 456677888777777888999999985554
No 130
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=21.70 E-value=1.6e+02 Score=20.00 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=25.3
Q ss_pred CceeeEEeCCEEEEccCCC--CCCCeEEEEeEEEeCC
Q 030413 26 GTNKIVRVGDCVLMRPSDT--GKPPYVARIEKIESDA 60 (177)
Q Consensus 26 g~~~~~~vGD~V~v~~~~~--~~~~~Ig~I~~i~~~~ 60 (177)
|....|.+|+-|++..+++ ....|-|+|+++....
T Consensus 15 ~~~~~F~~GEkVLc~hgd~~k~~~lYeAKIl~v~~~~ 51 (110)
T 3m9p_A 15 GMKFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGK 51 (110)
T ss_dssp ---CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEE
T ss_pred CCCCcccCCCEEEEEcCCCCCCCCceeeEEEEEEecc
Confidence 3335789999999997652 1357899999998754
No 131
>2lqk_A Transcriptional regulator; RNA polymerase interacting domain, transcription regulator; NMR {Thermus thermophilus}
Probab=26.71 E-value=20 Score=22.24 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=20.2
Q ss_pred eEEeCCEEEEccCCCCCCCeEEEEeEEEeCC
Q 030413 30 IVRVGDCVLMRPSDTGKPPYVARIEKIESDA 60 (177)
Q Consensus 30 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~ 60 (177)
.|++||+|.-.... ||+|+.|.+..
T Consensus 6 ~f~~GD~VVy~~hG------vg~i~gIe~~~ 30 (70)
T 2lqk_A 6 EFRPGDKVVLPPYG------VGVVAGIAQRS 30 (70)
Confidence 68999999876665 99999998753
No 132
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=21.06 E-value=66 Score=22.18 Aligned_cols=28 Identities=11% Similarity=0.321 Sum_probs=23.3
Q ss_pred eEEeCCEEEEccCCCCCCCeEEEEeEEEeC
Q 030413 30 IVRVGDCVLMRPSDTGKPPYVARIEKIESD 59 (177)
Q Consensus 30 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~ 59 (177)
.+++||.|+.+..+ ..+|=|+|.++...
T Consensus 5 ~v~vGq~V~akh~n--gryy~~~V~~~~~~ 32 (118)
T 2qqr_A 5 SITAGQKVISKHKN--GRFYQCEVVRLTTE 32 (118)
T ss_dssp CCCTTCEEEEECTT--SSEEEEEEEEEEEE
T ss_pred eeccCCEEEEECCC--CCEEeEEEEEEeeE
Confidence 67899999988775 68999999998653
No 133
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=20.91 E-value=60 Score=22.18 Aligned_cols=10 Identities=40% Similarity=0.491 Sum_probs=5.6
Q ss_pred eCCEEEEccC
Q 030413 33 VGDCVLMRPS 42 (177)
Q Consensus 33 vGD~V~v~~~ 42 (177)
+||.|.|...
T Consensus 73 ~GD~V~ve~~ 82 (117)
T 2oqk_A 73 PGDIVLVSLR 82 (117)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEE
Confidence 5566655544
No 134
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=20.76 E-value=76 Score=21.34 Aligned_cols=20 Identities=15% Similarity=0.383 Sum_probs=12.1
Q ss_pred EcCceeeEEeCCEEEEccCC
Q 030413 24 IRGTNKIVRVGDCVLMRPSD 43 (177)
Q Consensus 24 ~~g~~~~~~vGD~V~v~~~~ 43 (177)
++|....+..||++++.++.
T Consensus 93 i~~~~~~l~~Gd~i~i~~~~ 112 (133)
T 1o4t_A 93 DNGKDVPIKAGDVCFTDSGE 112 (133)
T ss_dssp ETTEEEEEETTEEEEECTTC
T ss_pred ECCEEEEeCCCcEEEECCCC
Confidence 33434566777777776664
No 135
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=20.59 E-value=68 Score=19.86 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=15.2
Q ss_pred EEcCceeeEEeCCEEEEccCC
Q 030413 23 TIRGTNKIVRVGDCVLMRPSD 43 (177)
Q Consensus 23 ~~~g~~~~~~vGD~V~v~~~~ 43 (177)
.++|....+..||.+++.++.
T Consensus 64 ~~~~~~~~l~~Gd~~~ip~~~ 84 (102)
T 3d82_A 64 AFRDQNITLQAGEMYVIPKGV 84 (102)
T ss_dssp ECSSCEEEEETTEEEEECTTC
T ss_pred EECCEEEEEcCCCEEEECCCC
Confidence 444545677888888888876
No 136
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=20.29 E-value=85 Score=20.24 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=14.5
Q ss_pred EEcCcee-eEEeCCEEEEccCC
Q 030413 23 TIRGTNK-IVRVGDCVLMRPSD 43 (177)
Q Consensus 23 ~~~g~~~-~~~vGD~V~v~~~~ 43 (177)
.+++... .++.||.+++.++.
T Consensus 61 ~i~~~~~~~l~~Gd~i~ip~~~ 82 (117)
T 2b8m_A 61 TLEDQEPHNYKEGNIVYVPFNV 82 (117)
T ss_dssp EETTSCCEEEETTCEEEECTTC
T ss_pred EECCEEEEEeCCCCEEEECCCC
Confidence 4444445 77888888888775
No 137
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=20.19 E-value=1.9e+02 Score=18.74 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=14.2
Q ss_pred EEcCceeeEEeCCEEEEccCC
Q 030413 23 TIRGTNKIVRVGDCVLMRPSD 43 (177)
Q Consensus 23 ~~~g~~~~~~vGD~V~v~~~~ 43 (177)
.++|....++.||.+++.+..
T Consensus 68 ~i~~~~~~l~~Gd~~~i~~~~ 88 (128)
T 4i4a_A 68 RINDEDFPVTKGDLIIIPLDS 88 (128)
T ss_dssp EETTEEEEEETTCEEEECTTC
T ss_pred EECCEEEEECCCcEEEECCCC
Confidence 344544566788888887775
No 138
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=20.09 E-value=80 Score=21.45 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=23.7
Q ss_pred eEEeCCEEEEccCCCCCCCeEEEEeEEEeCC
Q 030413 30 IVRVGDCVLMRPSDTGKPPYVARIEKIESDA 60 (177)
Q Consensus 30 ~~~vGD~V~v~~~~~~~~~~Ig~I~~i~~~~ 60 (177)
.++.||.|.|.++.+ .=-.|+|.++....
T Consensus 6 ~IkkGD~V~Vi~Gkd--KGk~GkV~~V~~~~ 34 (110)
T 3v2d_Y 6 HVKKGDTVLVASGKY--KGRVGKVKEVLPKK 34 (110)
T ss_dssp SCCTTSEEEECSSTT--TTCEEEEEEEEGGG
T ss_pred ccCCCCEEEEeEcCC--CCeEeEEEEEECCC
Confidence 578999999999874 44579999998753
Done!