Query 030414
Match_columns 177
No_of_seqs 172 out of 1305
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 13:22:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0153 GalK Galactokinase [Ca 100.0 6.8E-39 1.5E-43 279.8 16.8 146 25-177 240-389 (390)
2 PLN02865 galactokinase 100.0 1.1E-38 2.3E-43 284.3 17.9 150 28-177 274-423 (423)
3 PRK05101 galactokinase; Provis 100.0 1E-34 2.2E-39 255.7 18.0 163 8-177 202-382 (382)
4 PTZ00290 galactokinase; Provis 100.0 2.2E-34 4.8E-39 259.2 17.5 133 38-177 316-456 (468)
5 PRK05322 galactokinase; Provis 100.0 1.4E-32 3.1E-37 242.5 18.0 148 23-177 239-387 (387)
6 PRK00555 galactokinase; Provis 100.0 2.7E-32 5.9E-37 239.0 17.7 146 24-177 217-362 (363)
7 TIGR00131 gal_kin galactokinas 100.0 1.5E-32 3.3E-37 241.8 15.0 161 10-177 203-386 (386)
8 PLN02521 galactokinase 100.0 2.2E-32 4.8E-37 248.0 14.8 129 48-177 359-494 (497)
9 PRK03817 galactokinase; Provis 100.0 4.4E-28 9.5E-33 210.8 18.8 157 9-177 177-350 (351)
10 KOG0631 Galactokinase [Carbohy 99.9 9E-23 2E-27 181.9 11.9 127 48-176 353-486 (489)
11 PTZ00298 mevalonate kinase; Pr 99.7 9.6E-17 2.1E-21 138.8 14.1 129 9-150 183-312 (328)
12 COG1577 ERG12 Mevalonate kinas 99.7 1.3E-16 2.7E-21 137.5 11.7 84 62-150 211-294 (307)
13 TIGR00549 mevalon_kin mevalona 99.7 7.3E-17 1.6E-21 135.0 8.0 68 62-131 206-273 (273)
14 PF08544 GHMP_kinases_C: GHMP 99.7 4.3E-16 9.4E-21 108.6 8.8 82 67-149 1-84 (85)
15 PLN02677 mevalonate kinase 99.7 9.4E-16 2E-20 135.9 12.2 100 64-176 272-381 (387)
16 TIGR01220 Pmev_kin_Gr_pos phos 99.6 5.9E-15 1.3E-19 129.3 11.7 81 64-146 258-344 (358)
17 PRK03926 mevalonate kinase; Pr 99.6 2.3E-14 5.1E-19 121.9 14.9 96 65-176 202-298 (302)
18 PRK13412 fkp bifunctional fuco 99.6 1.2E-14 2.5E-19 140.3 12.1 82 64-147 868-951 (974)
19 COG2605 Predicted kinase relat 99.6 3.2E-14 6.9E-19 121.1 11.7 93 52-147 220-313 (333)
20 KOG1511 Mevalonate kinase MVK/ 99.3 1.6E-11 3.4E-16 106.8 10.8 86 78-176 293-379 (397)
21 PRK01212 homoserine kinase; Pr 99.1 4.6E-10 1E-14 95.6 11.2 106 57-177 194-301 (301)
22 PLN02451 homoserine kinase 99.1 1.7E-09 3.6E-14 95.6 12.5 105 61-176 258-364 (370)
23 PTZ00299 homoserine kinase; Pr 98.8 3.8E-08 8.1E-13 86.1 10.3 106 56-176 201-321 (336)
24 TIGR00191 thrB homoserine kina 98.8 6E-08 1.3E-12 83.0 10.4 102 61-176 198-301 (302)
25 PRK03188 4-diphosphocytidyl-2- 98.7 4.3E-08 9.4E-13 83.7 8.9 96 63-177 197-295 (300)
26 COG0083 ThrB Homoserine kinase 98.7 3E-07 6.5E-12 79.2 11.8 109 54-177 187-297 (299)
27 PRK02534 4-diphosphocytidyl-2- 98.6 6.8E-08 1.5E-12 83.0 6.0 100 61-176 208-310 (312)
28 PRK00128 ipk 4-diphosphocytidy 98.6 9.5E-08 2.1E-12 80.9 6.7 77 64-147 194-272 (286)
29 TIGR01920 Shik_kin_archae shik 98.5 5.1E-07 1.1E-11 76.2 8.0 73 62-146 181-253 (261)
30 PRK01123 shikimate kinase; Pro 98.2 9.9E-06 2.1E-10 68.8 9.9 87 65-176 194-281 (282)
31 PRK14613 4-diphosphocytidyl-2- 98.2 6.7E-06 1.4E-10 70.6 7.7 79 64-150 208-289 (297)
32 TIGR00144 beta_RFAP_syn beta-R 98.2 4.1E-05 8.9E-10 66.6 12.7 96 66-177 224-324 (324)
33 COG1907 Predicted archaeal sug 98.1 0.00013 2.8E-09 62.7 13.5 124 36-176 181-310 (312)
34 TIGR01219 Pmev_kin_ERG8 phosph 97.9 0.00028 6.1E-09 64.2 13.7 74 75-150 353-431 (454)
35 TIGR00154 ispE 4-diphosphocyti 97.8 9.4E-05 2E-09 63.3 8.3 73 70-148 202-275 (293)
36 PRK14614 4-diphosphocytidyl-2- 97.7 4.5E-05 9.8E-10 64.8 5.2 46 98-146 222-268 (280)
37 PRK14612 4-diphosphocytidyl-2- 97.6 5.8E-05 1.3E-09 63.9 4.5 75 63-147 189-264 (276)
38 PRK14616 4-diphosphocytidyl-2- 97.6 0.00026 5.5E-09 60.3 7.3 77 67-150 198-276 (287)
39 PRK14615 4-diphosphocytidyl-2- 97.4 0.00025 5.4E-09 60.9 5.3 47 97-146 239-286 (296)
40 KOG1537 Homoserine kinase [Ami 97.1 0.0034 7.3E-08 53.7 8.7 104 52-170 237-345 (355)
41 PRK14609 4-diphosphocytidyl-2- 96.9 0.00091 2E-08 56.7 3.8 45 88-135 209-253 (269)
42 PRK14608 4-diphosphocytidyl-2- 96.9 0.0019 4E-08 55.3 5.6 47 97-146 229-277 (290)
43 PRK14610 4-diphosphocytidyl-2- 96.3 0.0096 2.1E-07 50.8 5.9 57 87-146 211-269 (283)
44 PRK14611 4-diphosphocytidyl-2- 95.0 0.069 1.5E-06 45.1 6.4 66 62-134 189-254 (275)
45 TIGR01240 mevDPdecarb diphosph 94.1 0.65 1.4E-05 40.2 10.2 83 63-148 212-304 (305)
46 KOG4644 L-fucose kinase [Carbo 93.3 0.51 1.1E-05 44.2 8.5 92 52-145 821-919 (948)
47 PRK00343 ipk 4-diphosphocytidy 92.1 0.32 6.9E-06 41.2 5.3 47 97-148 216-263 (271)
48 COG1947 IspE 4-diphosphocytidy 91.8 0.29 6.4E-06 42.3 4.7 47 97-146 224-271 (289)
49 PLN02407 diphosphomevalonate d 89.8 3.3 7.2E-05 36.7 9.6 95 52-150 227-333 (343)
50 COG1685 Archaeal shikimate kin 89.7 8 0.00017 33.3 11.5 63 72-146 197-259 (278)
51 PRK00650 4-diphosphocytidyl-2- 89.6 0.83 1.8E-05 39.4 5.6 49 98-149 206-259 (288)
52 COG3407 MVD1 Mevalonate pyroph 83.7 25 0.00054 31.1 11.6 93 51-149 207-309 (329)
53 PF03460 NIR_SIR_ferr: Nitrite 79.9 5.5 0.00012 26.1 4.9 48 96-146 21-68 (69)
54 COG4542 PduX Protein involved 76.8 39 0.00085 29.1 10.1 65 66-136 201-265 (293)
55 PRK05905 hypothetical protein; 74.8 3.4 7.4E-05 35.0 3.3 31 98-132 223-253 (258)
56 KOG2833 Mevalonate pyrophospha 70.7 67 0.0015 28.6 10.3 96 50-149 224-330 (395)
57 COG0024 Map Methionine aminope 52.5 32 0.00069 29.3 5.1 39 94-132 34-72 (255)
58 PF03991 Prion_octapep: Copper 45.0 10 0.00023 15.4 0.5 6 120-125 2-7 (8)
59 COG2221 DsrA Dissimilatory sul 44.8 43 0.00093 29.4 4.7 50 94-146 40-89 (317)
60 cd06460 M32_Taq Peptidase fami 38.3 1.1E+02 0.0023 27.7 6.4 71 20-100 217-298 (396)
61 COG1461 Predicted kinase relat 36.8 36 0.00079 32.0 3.2 28 16-43 81-113 (542)
62 TIGR02957 SigX4 RNA polymerase 36.0 89 0.0019 26.2 5.3 23 64-86 170-192 (281)
63 PHA01735 hypothetical protein 32.4 35 0.00075 23.5 1.8 44 34-77 5-48 (76)
64 PRK00411 cdc6 cell division co 32.3 3.3E+02 0.0072 23.5 10.8 113 33-147 269-387 (394)
65 PRK09635 sigI RNA polymerase s 32.2 1E+02 0.0022 26.2 5.1 23 64-86 180-202 (290)
66 TIGR03315 Se_ygfK putative sel 31.7 27 0.00059 35.3 1.7 27 94-121 277-304 (1012)
67 PF03118 RNA_pol_A_CTD: Bacter 31.1 47 0.001 22.1 2.3 43 66-108 22-64 (66)
68 PRK09853 putative selenate red 29.8 31 0.00067 34.9 1.7 27 94-121 279-306 (1019)
69 PRK07758 hypothetical protein; 28.3 62 0.0013 23.5 2.6 46 67-113 46-91 (95)
70 PF15136 UPF0449: Uncharacteri 28.1 1.5E+02 0.0033 21.6 4.6 37 48-84 53-91 (97)
71 COG2443 Sss1 Preprotein transl 28.0 1.9E+02 0.0042 19.5 5.1 35 50-87 7-41 (65)
72 KOG3304 Surfeit family protein 27.0 57 0.0012 25.2 2.4 10 119-128 1-10 (148)
73 COG3064 TolA Membrane protein 26.8 65 0.0014 28.6 2.9 28 117-144 38-67 (387)
74 PRK09636 RNA polymerase sigma 25.6 1.6E+02 0.0036 24.6 5.2 23 64-86 177-199 (293)
75 PF00543 P-II: Nitrogen regula 25.2 2.5E+02 0.0054 19.7 6.7 67 98-172 7-95 (102)
76 PRK05377 fructose-1,6-bisphosp 24.7 1.1E+02 0.0023 26.7 3.9 46 97-150 120-165 (296)
77 PF11126 Phage_DsbA: Transcrip 24.5 99 0.0021 21.2 2.9 35 75-109 33-67 (69)
78 PRK13848 conjugal transfer pro 24.1 2.8E+02 0.006 20.2 5.3 46 57-105 8-53 (98)
79 PF11815 DUF3336: Domain of un 23.4 1.9E+02 0.0042 22.1 4.8 38 62-101 61-98 (145)
80 TIGR02049 gshA_ferroox glutama 22.5 1E+02 0.0022 28.0 3.4 32 135-174 236-268 (403)
81 PHA02599 dsbA double-stranded 21.9 3.1E+02 0.0067 19.7 6.3 35 75-109 55-89 (91)
82 PF02082 Rrf2: Transcriptional 21.3 2.7E+02 0.0058 18.7 5.0 51 90-143 31-82 (83)
83 COG1916 Uncharacterized homolo 20.7 1.8E+02 0.004 26.2 4.6 63 51-114 48-113 (388)
84 TIGR02928 orc1/cdc6 family rep 20.1 5.4E+02 0.012 21.8 7.8 49 77-127 308-359 (365)
No 1
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.8e-39 Score=279.77 Aligned_cols=146 Identities=35% Similarity=0.532 Sum_probs=138.7
Q ss_pred hcCc--ccccCCCHHHHHHhhccC--CHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccCCChH
Q 030414 25 IMIL--IFFQTVEEEVYEAHKNEL--EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEP 100 (177)
Q Consensus 25 ~~g~--~~Lr~v~~~~l~~~~~~l--~~~~~~R~~hvv~E~~Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pe 100 (177)
.|++ ++|||+++++|.++.+.+ ++..++|++|+++||+||+++++||+++|+..||+||++||.|||++|+|||||
T Consensus 240 ~l~~~~~~L~d~~~~~~~~~~~~i~~~~~~~rRa~hvv~En~Rvl~a~~Al~~~dl~~fG~Lm~~SH~slrddyevt~pE 319 (390)
T COG0153 240 FLGVSIKSLRDVTDEEFAALQAEIEVDPKIARRARHVVTENQRVLEAAKALRSGDLTEFGELMNESHESLRDDYEVTCPE 319 (390)
T ss_pred HHHHhhhhhhhcCHHHHHhhhhhcccchHHHHHHHHHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchh
Confidence 3466 999999999999999988 478899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCceeEeecCCCCceEEEEeccccHHHHHHHHHHHhHhhchhhhhhcCCCceEEEeecCCceeeC
Q 030414 101 LIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 177 (177)
Q Consensus 101 lD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~~~~~v~~~l~~~y~~~~~~~~~~~g~~~~~~~~~~~~Ga~~~ 177 (177)
+|+|++.|....|++||||||||||||+|+|++++.++++.+++.+.|++. +|+++.+|+++|++|++++
T Consensus 320 lD~lve~a~~~~G~~GaRmTGaGfGGc~IaLv~~~~v~~~~e~v~~~y~~~-------~g~k~~~yv~~~~~G~~~~ 389 (390)
T COG0153 320 LDTLVEIALAAGGAYGARMTGAGFGGCVIALVPNDDVEAVAEAVAEEYEKV-------TGLKAAFYVVEASQGAGVC 389 (390)
T ss_pred HHHHHHHHHHcCCcccceecCCCCCceEEEEechhhHHHHHHHHHHhHHhh-------cCccccEEEEeccCCcccc
Confidence 999999999878999999999999999999999999999999999999996 4899999999999999864
No 2
>PLN02865 galactokinase
Probab=100.00 E-value=1.1e-38 Score=284.30 Aligned_cols=150 Identities=71% Similarity=1.147 Sum_probs=144.9
Q ss_pred cccccCCCHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHH
Q 030414 28 LIFFQTVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEI 107 (177)
Q Consensus 28 ~~~Lr~v~~~~l~~~~~~l~~~~~~R~~hvv~E~~Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~ 107 (177)
+++||+++++++...+..+++.+++|++|+++|+.||.+++++|+++|++.||+||++||.|||++|++||||+|.|++.
T Consensus 274 ~~~Lr~~~~~~~~~~~~~l~~~l~~Ra~Hv~~E~~Rv~~~~~al~~~d~~~~g~lm~~sh~Slrd~yevS~~eld~lv~~ 353 (423)
T PLN02865 274 EPLLCNVEPEVYEAHKCKLEAVLARRAEHYFSENMRVIKGVEAWASGNLEEFGKLISASGLSSIENYECGCEPLIQLYEI 353 (423)
T ss_pred hhhhhcCCHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhHHhhccCCcHHHHHHHHH
Confidence 68899999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCceeEeecCCCCceEEEEeccccHHHHHHHHHHHhHhhchhhhhhcCCCceEEEeecCCceeeC
Q 030414 108 LQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 177 (177)
Q Consensus 108 a~~~~Ga~GaK~tGaG~GG~viaLv~~~~~~~v~~~l~~~y~~~~~~~~~~~g~~~~~~~~~~~~Ga~~~ 177 (177)
+++.+|++|+||||||||||+|+|++.+.+++++++|.+.|++++|++.++++.++.+|+++|++|++++
T Consensus 354 a~~~~Ga~GaR~tGgGfGGc~vaLv~~~~~~~~~~~v~~~Y~~~~p~~~~~~~~~~~~~~~~p~~Ga~~~ 423 (423)
T PLN02865 354 LLKAPGVYGARFSGAGFRGCCVAFVDAEMAEEAASFVRDEYEKAQPELASNINGDKPVLICEAGDCARVL 423 (423)
T ss_pred HHhcCCCeEEEEeccCCccEEEEEEchhHHHHHHHHHHHHHHhhccccccccCCCCcEEEEecCCCcccC
Confidence 9986799999999999999999999999999999999999999999888888999999999999999975
No 3
>PRK05101 galactokinase; Provisional
Probab=100.00 E-value=1e-34 Score=255.73 Aligned_cols=163 Identities=28% Similarity=0.382 Sum_probs=148.4
Q ss_pred CcceeeeeccchHHH----------H-------HhcCcccccCCCHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 030414 8 GEYFHLILFSSFVIL----------Q-------LIMILIFFQTVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEA 70 (177)
Q Consensus 8 ~~~~~~~~~~~~~~l----------~-------~~~g~~~Lr~v~~~~l~~~~~~l~~~~~~R~~hvv~E~~Rv~~~~~a 70 (177)
.+.+.++++|+++.. + ..+|+++|++++++++...++.|++.+++|++|+++|+.||.++++|
T Consensus 202 ~~~~~~vv~~sg~~~~l~~~~y~~r~~e~~~A~~~l~~~~l~~~~~~~~~~~~~~l~~~~~~r~~h~i~E~~rv~~a~~a 281 (382)
T PRK05101 202 PEGVAVVIINSNVKRGLVDSEYNTRRQQCETAARFFGVKALRDVTLEQFNAVAAELDPVVAKRARHVITENARTLEAASA 281 (382)
T ss_pred CCCcEEEEEeCCCCccccccchhHHHHHHHHHHHHhChHhhhcCCHHHHHHHHhhCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345567888877544 1 55799999999999999998899999999999999999999999999
Q ss_pred HhCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCC-ceeEeecCCCCceEEEEeccccHHHHHHHHHHHhH
Q 030414 71 WKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGV-FGARFSGAGFRGCCLALVDADRAEEAASYVRSEYF 149 (177)
Q Consensus 71 L~~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga-~GaK~tGaG~GG~viaLv~~~~~~~v~~~l~~~y~ 149 (177)
|+++|++.||+||++||.+|+++|+|||||+|.|++.+++.+|+ +||||||||||||+|+|++++..+++.++|.+.|+
T Consensus 282 l~~~d~~~lG~Lm~~sh~~lr~~~~vS~~eld~lv~~a~~~~Ga~gGakltGaG~GG~~ial~~~~~~~~~~~~~~~~y~ 361 (382)
T PRK05101 282 LAAGDLKRMGELMAESHASMRDDFEITVPQIDTLVEIVKAVIGDQGGVRMTGGGFGGCIVALVPEELVEAVRQAVAEQYE 361 (382)
T ss_pred HHcCCHHHHHHHHHHHhHHHHhhcCCCCHhHHHHHHHHHhccCCcceEEeccCCCccEEEEEEcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988999999999999999984598 58899999999999999999999999999999999
Q ss_pred hhchhhhhhcCCCceEEEeecCCceeeC
Q 030414 150 ELQPELASQLNADSAVLICKPGDCARVI 177 (177)
Q Consensus 150 ~~~~~~~~~~g~~~~~~~~~~~~Ga~~~ 177 (177)
++ +++.+.+|+++|++|+++.
T Consensus 362 ~~-------~~~~~~~~~~~~~~Ga~~~ 382 (382)
T PRK05101 362 AK-------TGLKETFYVCKASQGAGQC 382 (382)
T ss_pred Hh-------hCCCCeEEEEecCCCcccC
Confidence 86 4899999999999999873
No 4
>PTZ00290 galactokinase; Provisional
Probab=100.00 E-value=2.2e-34 Score=259.15 Aligned_cols=133 Identities=20% Similarity=0.316 Sum_probs=122.1
Q ss_pred HH-HHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHH
Q 030414 38 VY-EAHKNELEPTLAKRAEHYFTENRRVAKGLEAWK-------SGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQ 109 (177)
Q Consensus 38 ~l-~~~~~~l~~~~~~R~~hvv~E~~Rv~~~~~aL~-------~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~ 109 (177)
++ ..++..+++.+++|++|+++||.||.+++++|+ .+|+..||+||++||.||+++|+|||||||.|++.+.
T Consensus 316 ~~~~~~~~~l~~~~~~Ra~HVitEn~RV~~a~~al~~~~~l~~~~~~~~lG~lm~~sh~sL~~~~~vS~~elD~lv~~~~ 395 (468)
T PTZ00290 316 AFMESCKPLMTPGEFERGTYNIMEQIRTLEFIKLNDPELPLSREERFRKAGEILNAGHQGMRDLMKITTPELDFIHELIN 395 (468)
T ss_pred HHHHHhhhcCCHHHHHHHHHHhhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 44 366677899999999999999999999999995 5669999999999999999999999999999999876
Q ss_pred hCCCCceeEeecCCCCceEEEEeccccHHHHHHHHHHHhHhhchhhhhhcCCCceEEEeecCCceeeC
Q 030414 110 RAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 177 (177)
Q Consensus 110 ~~~Ga~GaK~tGaG~GG~viaLv~~~~~~~v~~~l~~~y~~~~~~~~~~~g~~~~~~~~~~~~Ga~~~ 177 (177)
...|++||||||||||||+|+|++++..+++++++.+.|.++ ||+++.+|+++|++|++++
T Consensus 396 ~~~G~~GaRlTGaG~GGc~i~Lv~~~~~~~~~~~v~~~y~~~-------~g~~~~~~~~~~~~Ga~~~ 456 (468)
T PTZ00290 396 EEKGVAGGRMMGGGFGGCIILLLKKNAVDRVVAHVREKFKAR-------FGVENDVYPVVAGDGAFVV 456 (468)
T ss_pred HhCCCcEEEEecCCCceEEEEEechhhHHHHHHHHHHHHHHh-------hCCCCcEEEEecCCCcEEE
Confidence 557999999999999999999999999999999999999885 5899999999999999874
No 5
>PRK05322 galactokinase; Provisional
Probab=100.00 E-value=1.4e-32 Score=242.55 Aligned_cols=148 Identities=34% Similarity=0.497 Sum_probs=138.8
Q ss_pred HHhcCcccccCCCHHHHHHhhccC-CHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccCCChHH
Q 030414 23 QLIMILIFFQTVEEEVYEAHKNEL-EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPL 101 (177)
Q Consensus 23 ~~~~g~~~Lr~v~~~~l~~~~~~l-~~~~~~R~~hvv~E~~Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pel 101 (177)
++.+++++||+++++++..+++.+ ++.+++|++|++.|+.|+..+++||+++|++.||++|++||.+|++.|++|+|++
T Consensus 239 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~h~v~e~~r~~~~~~al~~~d~~~lg~lm~~sh~~L~~~y~~s~~el 318 (387)
T PRK05322 239 QKKLDIKSLGELTEEEFDEYSYLIKDETLLKRARHAVTENQRTLKAVKALKAGDLEKFGRLMNASHVSLRDDYEVTGLEL 318 (387)
T ss_pred hhhcCccchhcCCHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhHHHHhhhcCCCHhH
Confidence 444578899999999999998888 4899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCceeEeecCCCCceEEEEeccccHHHHHHHHHHHhHhhchhhhhhcCCCceEEEeecCCceeeC
Q 030414 102 IQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 177 (177)
Q Consensus 102 D~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~~~~~v~~~l~~~y~~~~~~~~~~~g~~~~~~~~~~~~Ga~~~ 177 (177)
|.|++.+++..|++|+||||||||||+|+|++.+..+++.+.|.+.|+++ +|++|.+|+++|++|++++
T Consensus 319 d~lv~~a~~~~Ga~garlsGaG~GG~vial~~~~~~~~~~~~l~~~y~~~-------~~~~~~~~~~~~~~Ga~~~ 387 (387)
T PRK05322 319 DTLVEAAWKQEGVLGARMTGAGFGGCAIAIVKKDKVEAFKENVGKAYEEK-------IGYAASFYVAEIGDGAREL 387 (387)
T ss_pred HHHHHHHHhcCCccEEEEecCCCceEEEEEEcHHHHHHHHHHHHHHHHHh-------cCCCCcEEEEecCCCcccC
Confidence 99999997548999999999999999999999999999999999999986 4999999999999999975
No 6
>PRK00555 galactokinase; Provisional
Probab=100.00 E-value=2.7e-32 Score=239.03 Aligned_cols=146 Identities=30% Similarity=0.356 Sum_probs=137.5
Q ss_pred HhcCcccccCCCHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccCCChHHHH
Q 030414 24 LIMILIFFQTVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQ 103 (177)
Q Consensus 24 ~~~g~~~Lr~v~~~~l~~~~~~l~~~~~~R~~hvv~E~~Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pelD~ 103 (177)
+.++++++|+++++.+..+....++..++|++|+++|+.|+.+++++|+++|++.||++|+++|.++|+.|+||+|++|.
T Consensus 217 ~~~~~~~lr~~~~~~~~~~~~~~~~~~~~r~~h~~~e~~~v~~~~~al~~gd~~~lg~lm~~~h~~lr~~~~vS~~~ld~ 296 (363)
T PRK00555 217 ADLGVSSLRAVQDRGLAALGAIADPIDARRARHVLTENQRVLDFAAALADSDFTAAGQLLTASHASMRDDFEITTERIDL 296 (363)
T ss_pred HHhCccchhcCCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhHHHHhhcCCCChhHHH
Confidence 34677899999999998888778889999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHHHhCCCCceeEeecCCCCceEEEEeccccHHHHHHHHHHHhHhhchhhhhhcCCCceEEEeecCCceeeC
Q 030414 104 LNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 177 (177)
Q Consensus 104 lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~~~~~v~~~l~~~y~~~~~~~~~~~g~~~~~~~~~~~~Ga~~~ 177 (177)
|++.+++ .|++|+||||||||||+++|++.+..+++.+.|.+.|+++ ++.+|++|+++|++|++++
T Consensus 297 l~~~a~~-~Ga~GaklsGaG~Gg~vial~~~~~~~~~~~~l~~~y~~~-------~~~~~~~~~~~~~~g~~~~ 362 (363)
T PRK00555 297 IADSAVR-AGALGARMTGGGFGGCVIALVPADRAEDVADTVRRAAVTA-------GYPEPAVSRTYAAPGAGEC 362 (363)
T ss_pred HHHHHHh-cCCeEEEECCCCccCeEEEEEchhHHHHHHHHHHHHHHHc-------cCCCCcEEEEecCCCcccC
Confidence 9999998 8999999999999999999999999999999999999985 4889999999999999975
No 7
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=100.00 E-value=1.5e-32 Score=241.75 Aligned_cols=161 Identities=24% Similarity=0.346 Sum_probs=143.2
Q ss_pred ceeeeeccchHHHHHh-----------------cCcc---cccCCCHHHHH---HhhccCCHHHHHHHHHHHHHHHHHHH
Q 030414 10 YFHLILFSSFVILQLI-----------------MILI---FFQTVEEEVYE---AHKNELEPTLAKRAEHYFTENRRVAK 66 (177)
Q Consensus 10 ~~~~~~~~~~~~l~~~-----------------~g~~---~Lr~v~~~~l~---~~~~~l~~~~~~R~~hvv~E~~Rv~~ 66 (177)
.++++++++++..++. ++.+ ++|+++++++. +....+++..++|++|+++|+.||.+
T Consensus 203 ~~~lvv~~s~~~~~t~~~~y~~r~~e~~~a~~~l~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~e~~rv~~ 282 (386)
T TIGR00131 203 GIAFVIANTNVKRTLAPSNYNTRRQECTTAANFLAATDKGALRDFMNEYFARYIARLTKMLPLVEERAKHVVSENLRVLK 282 (386)
T ss_pred CeEEEEEeCCCccccccchhHHHHHHHHHHHHHhccccccchhhCCHHHHhhhHhhHhhcCHHHHhhHheeehHHHHHHH
Confidence 5789999987765432 3333 89999999887 45667888889999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccccHHHHHHHHHH
Q 030414 67 GLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRS 146 (177)
Q Consensus 67 ~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~~~~~v~~~l~~ 146 (177)
+.++|+++|++.||++|++||.+|+++|++|||++|.+++.+...+||+|+||||||||||+|+|++++.++++.++|.+
T Consensus 283 ~~~al~~~d~~~lG~lm~~sh~~l~~~~~vs~peld~lv~~a~~~~GAlGakltGaG~GG~vial~~~~~~~~v~~~~~~ 362 (386)
T TIGR00131 283 AVKAMKDNDFKQFGALMNESHASCDDDYECTCPEIDELVCSAALVNGSGGSRMTGAGFGGCTVHLVPNENVDKVRQAVAD 362 (386)
T ss_pred HHHHHHhCcHHHHHHHHHHhhHHHHHhcCCCCHHHHHHHHHHHhcCCCcEEEEecCCCceEEEEEEcHHHHHHHHHHHHH
Confidence 99999999999999999999999999899999999999988754589999999999999999999999999999999999
Q ss_pred HhHhhchhhhhhcCCCceEEEeecCCceeeC
Q 030414 147 EYFELQPELASQLNADSAVLICKPGDCARVI 177 (177)
Q Consensus 147 ~y~~~~~~~~~~~g~~~~~~~~~~~~Ga~~~ 177 (177)
.|+++ +|.++.+|++++++|++.+
T Consensus 363 ~y~~~-------~~~~~~~~~~~~~~Ga~~~ 386 (386)
T TIGR00131 363 KYPKK-------TGLELTFYVIVSKPGAGSC 386 (386)
T ss_pred HHHHh-------hCCCCcEEEEEECCCcCCC
Confidence 99775 4899999999999999863
No 8
>PLN02521 galactokinase
Probab=100.00 E-value=2.2e-32 Score=248.05 Aligned_cols=129 Identities=26% Similarity=0.450 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeEeecC
Q 030414 48 PTLAKRAEHYFTENRRVAKGLEAWKSG-----NSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGA 122 (177)
Q Consensus 48 ~~~~~R~~hvv~E~~Rv~~~~~aL~~~-----d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGa 122 (177)
+.+++|++|+++|+.||.+++++|+++ ++..||+||++||.||+++|+||||++|.|++.+++ .|++|+|||||
T Consensus 359 ~~l~~Ra~Hvv~E~~RV~~~~~al~~~~~~~~~~~~lg~lm~~sh~slr~~~~vS~~elD~lv~~a~~-~Ga~GaRltGa 437 (497)
T PLN02521 359 FKLHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMNESHYSCSVLYECSCPELEELVKVCRD-NGALGARLTGA 437 (497)
T ss_pred hHHhhhhhheecHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHh-cCCcEEEECCC
Confidence 478899999999999999999999876 399999999999999999999999999999999998 79999999999
Q ss_pred CCCceEEEEeccccHHHHHHHHHHHhHhhchh--hhhhcCCCceEEEeecCCceeeC
Q 030414 123 GFRGCCLALVDADRAEEAASYVRSEYFELQPE--LASQLNADSAVLICKPGDCARVI 177 (177)
Q Consensus 123 G~GG~viaLv~~~~~~~v~~~l~~~y~~~~~~--~~~~~g~~~~~~~~~~~~Ga~~~ 177 (177)
|||||+|+|++++..+++++.+.+.|++++|. -...+++++.+|+++|++||+++
T Consensus 438 G~GG~~i~lv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~~~ 494 (497)
T PLN02521 438 GWGGCAVALVKEAIVPQFILALKEKFYKSRIEKGVIKEEDLGLYVFASKPSSGAAIL 494 (497)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHHHHHhhccccccccccCCCCcEEEEecCCCceEe
Confidence 99999999999999999999999999987521 22336899999999999999873
No 9
>PRK03817 galactokinase; Provisional
Probab=99.96 E-value=4.4e-28 Score=210.82 Aligned_cols=157 Identities=32% Similarity=0.419 Sum_probs=138.7
Q ss_pred cceeeeeccchHH-----------------HHHhcCcccccCCCHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 030414 9 EYFHLILFSSFVI-----------------LQLIMILIFFQTVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAW 71 (177)
Q Consensus 9 ~~~~~~~~~~~~~-----------------l~~~~g~~~Lr~v~~~~l~~~~~~l~~~~~~R~~hvv~E~~Rv~~~~~aL 71 (177)
+.+.+++.+++.. ..+.++..++++++.+++. .+++.+++|+.|++.|+.|+.+++.+|
T Consensus 177 ~~~~~vv~~sg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~l~~~~~~~~~~~v~e~~r~~~~~~al 252 (351)
T PRK03817 177 EDYEILVFDTGVKRELASSEYNERRQECEEALKILGKKSSKEVTEEDLS----KLPPLLRKRAGYVLRENERVLKVRDAL 252 (351)
T ss_pred CCcEEEEEeCCCccccccchhHHHHHHHHHHHHHhCccchhcCCHHHHH----hCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777776631 2455677778888877654 467888999999999999999999999
Q ss_pred hCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccccHHHHHHHHHHHhHhh
Q 030414 72 KSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFEL 151 (177)
Q Consensus 72 ~~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~~~~~v~~~l~~~y~~~ 151 (177)
+++|++.||++|++||.++++.|++|+|++|+|++.+++ .|++|+||||||||||+++|++++..+++++++.+.|.+.
T Consensus 253 ~~~d~~~lg~l~~~s~~~l~~~~~~s~p~ld~l~~~a~~-~GalGaklsGaG~Gg~vlal~~~~~~~~~~~~l~~~~~~~ 331 (351)
T PRK03817 253 KEGDIETLGELLTESHWDLADNYEVSCEELDFFVEFALE-LGAYGARLTGAGFGGSAIALVDKGKFESIGEELLEEYKKR 331 (351)
T ss_pred HcCCHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH-cCCCEEEEecCCCCeEEEEEEchHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998899999999999999998 7999999999999999999999999999999999999875
Q ss_pred chhhhhhcCCCceEEEeecCCceeeC
Q 030414 152 QPELASQLNADSAVLICKPGDCARVI 177 (177)
Q Consensus 152 ~~~~~~~~g~~~~~~~~~~~~Ga~~~ 177 (177)
+ ++.+.+|++++++|++++
T Consensus 332 ~-------~~~~~~~~~~~~~G~~~~ 350 (351)
T PRK03817 332 F-------GIDPKYFVVESSDGVRKI 350 (351)
T ss_pred c-------CCCCcEEEEecCCCceeC
Confidence 4 788999999999999875
No 10
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=9e-23 Score=181.88 Aligned_cols=127 Identities=32% Similarity=0.498 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeEeec
Q 030414 48 PTLAKRAEHYFTENRRVAKGLEAWKSGN------SQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSG 121 (177)
Q Consensus 48 ~~~~~R~~hvv~E~~Rv~~~~~aL~~~d------~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tG 121 (177)
.++++|++|++.|+.|+.++..++...+ +..||+||++||.|.+.+|++||||+|+|++++++ +|.+|+|+||
T Consensus 353 ~k~~~rakHv~sea~rv~q~~~~~~~a~~~~d~~~~~~g~LmneS~~Sc~~~yEcscpel~qL~kiala-~g~~gaRlTG 431 (489)
T KOG0631|consen 353 KKLYQRAKHVYSEALRVLQEEKLCARAPGRADGFLADFGRLMNESHRSCDVLYECSCPELDQLCKIALA-NGGVGARLTG 431 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHhhhhhHHHHHHHhcCCHhHHHHHHHHHh-cCCccceeec
Confidence 4457899999999999999988886542 66789999999999999999999999999999998 8889999999
Q ss_pred CCCCceEEEEeccccHHHHHHHHHHHhH-hhchhhhhhcCCCceEEEeecCCceee
Q 030414 122 AGFRGCCLALVDADRAEEAASYVRSEYF-ELQPELASQLNADSAVLICKPGDCARV 176 (177)
Q Consensus 122 aG~GG~viaLv~~~~~~~v~~~l~~~y~-~~~~~~~~~~g~~~~~~~~~~~~Ga~~ 176 (177)
||||||+++|+|.+..+.+.+++.+.|+ +++|.+...- .+..++.++|+.|+.+
T Consensus 432 aGwGGc~v~lvp~d~~~~~~~~~~~~~Y~ka~~~~~~~~-~k~~~~~skp~~g~~l 486 (489)
T KOG0631|consen 432 AGWGGCTVALVPADLVDFAVAALKEIYYEKAYPKFAQDE-LKKALIVSKPAAGVLL 486 (489)
T ss_pred cccccceeeeccccchHHHHHhhhhhhhccccchhhhch-hhceEEEecCchhhhh
Confidence 9999999999999999999999887766 5667766653 5677888889998865
No 11
>PTZ00298 mevalonate kinase; Provisional
Probab=99.72 E-value=9.6e-17 Score=138.84 Aligned_cols=129 Identities=22% Similarity=0.276 Sum_probs=95.3
Q ss_pred cceeeeeccchHHHHHhcCcccccCCCHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 030414 9 EYFHLILFSSFVILQLIMILIFFQTVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGL 88 (177)
Q Consensus 9 ~~~~~~~~~~~~~l~~~~g~~~Lr~v~~~~l~~~~~~l~~~~~~R~~hvv~E~~Rv~~~~~aL~~~d~~~~G~lm~~sh~ 88 (177)
+.+++++.+++...++..-++.++. .... .+..+.+..+.+. ..+.++..+|.++|++.+|++|+++|.
T Consensus 183 ~~~~lvv~~~~~~~sT~~~~~~v~~--------~~~~-~p~~~~~~~~~~~--~~~~~~~~al~~~d~~~lg~~m~~~~~ 251 (328)
T PTZ00298 183 QPLYLVVCSTGITASTTKVVGDVRK--------LKEN-QPTWFNRLLENYN--ACVSEAKEALQKGNLFRVGELMNANHD 251 (328)
T ss_pred CCCeEEEEECCCchhHHHHHHHHHH--------HHhc-CHHHHHHHHHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3466888888777776433222211 1111 1222222222222 245677889999999999999999998
Q ss_pred hhhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEecc-ccHHHHHHHHHHHhHh
Q 030414 89 SSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYVRSEYFE 150 (177)
Q Consensus 89 slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~-~~~~~v~~~l~~~y~~ 150 (177)
.++ .+++++|++|++++.+++ .|++|+||||+|+|||+++|+++ +.++++.+.+.+.|..
T Consensus 252 ~l~-~~~v~~p~l~~l~~~~~~-~Ga~gaklSGsG~GG~v~al~~~~~~a~~~~~~l~~~~~~ 312 (328)
T PTZ00298 252 LCQ-KLTVSCRELDSIVQTCRT-YGALGAKMSGTGRGGLVVALAASEDQRDAIAKAVRARCPE 312 (328)
T ss_pred HHH-HhCCCcHHHHHHHHHHHh-CCCceeEeccCCCCeEEEEEecchhhHHHHHHHHHHHhhh
Confidence 887 478999999999999997 89999999999999999999976 6788899999888765
No 12
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=99.70 E-value=1.3e-16 Score=137.49 Aligned_cols=84 Identities=23% Similarity=0.351 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccccHHHHH
Q 030414 62 RRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAA 141 (177)
Q Consensus 62 ~Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~~~~~v~ 141 (177)
.-+.++..+++++|.+.||++|+.+|..|. ..+||+|++|+|++.+++ .|++|||+||||+|||+|+|+++++ ..
T Consensus 211 ~~~~~a~~al~~~d~e~lgelm~~nq~LL~-~LgVs~~~L~~lv~~a~~-~Ga~gaKlTGAGgGGc~IaL~~~~~---~~ 285 (307)
T COG1577 211 ELVQEAEAALQTGDFEELGELMNINQGLLK-ALGVSTPELDELVEAARS-LGALGAKLTGAGGGGCIIALAKNEE---IA 285 (307)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHh-cCccccccccCCCCceEEEEeccch---HH
Confidence 346678899999999999999999998775 579999999999999998 8999999999999999999998632 13
Q ss_pred HHHHHHhHh
Q 030414 142 SYVRSEYFE 150 (177)
Q Consensus 142 ~~l~~~y~~ 150 (177)
+.+.....+
T Consensus 286 ~~l~~~~~~ 294 (307)
T COG1577 286 ETLSNRLEK 294 (307)
T ss_pred HHHHHHHHh
Confidence 444444444
No 13
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=99.68 E-value=7.3e-17 Score=135.04 Aligned_cols=68 Identities=26% Similarity=0.407 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEE
Q 030414 62 RRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLAL 131 (177)
Q Consensus 62 ~Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaL 131 (177)
.++.++.++|+++|++.||++|+++|..+++ +++|+|++|+|++.+++ .|++|+||||||+|||+|+|
T Consensus 206 ~~~~~~~~al~~~d~~~lg~l~~~~~~~l~~-~~vs~p~l~~l~~~~~~-~Ga~gaklsGaG~GG~~i~l 273 (273)
T TIGR00549 206 ELTLEAKAALQDGDVESLGELMNINQGLLKA-LGVSHPKLDQLVETARK-AGALGAKLTGAGGGGCMIAL 273 (273)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-cCCCcHHHHHHHHHHHH-CCCceeeeccCCCCceEEeC
Confidence 4678889999999999999999999998864 79999999999999998 89999999999999999986
No 14
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=99.66 E-value=4.3e-16 Score=108.59 Aligned_cols=82 Identities=27% Similarity=0.363 Sum_probs=72.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHh-hhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEe-ccccHHHHHHHH
Q 030414 67 GLEAWKSGNSQDFGKLISASGLS-SIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALV-DADRAEEAASYV 144 (177)
Q Consensus 67 ~~~aL~~~d~~~~G~lm~~sh~s-lr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv-~~~~~~~v~~~l 144 (177)
+++||.++|++.|+++|+++|.+ ......+.+|+++.+++.+++ .|++|++|||+|||||+++|+ +++.++++.++|
T Consensus 1 m~~al~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~Ga~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 1 MIKALAEGDLELLGELMNENQENEPENYREVLTPEIDELKEAAEE-NGALGAKMSGSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-TTESEEEEETTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHCcCHHHHHHHHHHhhhhcchHHHHHcCHHHHHHHHHHHH-CCCCceecCCCCCCCeEEEEECCHHHHHHHHHHH
Confidence 46789999999999999999975 222467789999999999987 899999999999999999999 667899999999
Q ss_pred HHHhH
Q 030414 145 RSEYF 149 (177)
Q Consensus 145 ~~~y~ 149 (177)
++.|.
T Consensus 80 ~~~~~ 84 (85)
T PF08544_consen 80 REHYK 84 (85)
T ss_dssp HHHTH
T ss_pred HHhCC
Confidence 88775
No 15
>PLN02677 mevalonate kinase
Probab=99.66 E-value=9.4e-16 Score=135.88 Aligned_cols=100 Identities=12% Similarity=0.110 Sum_probs=77.1
Q ss_pred HHHHHHHHhC---------CCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEecc
Q 030414 64 VAKGLEAWKS---------GNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA 134 (177)
Q Consensus 64 v~~~~~aL~~---------~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~ 134 (177)
+.++.++|++ +|++.+|++|+.+|..|. .++||+|.||.+++.+++ .| +|||+||||+|||+|+|+++
T Consensus 272 ~~~a~~al~~~~~~~~~~~~~~~~Lg~lm~~N~~LL~-~LGVS~~~le~iv~~a~~-~~-~~AKlTGAGgGGC~IaL~~~ 348 (387)
T PLN02677 272 SEELATIIQSPAEDELSITEKEEKLKELMEMNQGLLQ-CMGVSHSSIETVLRTTLK-YK-LVSKLTGAGGGGCVLTLLPT 348 (387)
T ss_pred HHHHHHHHhccccccccccchHHHHHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHH-cC-CccccccCCCCCEEEEEccc
Confidence 3456677776 569999999999998776 589999999999999997 55 79999999999999999986
Q ss_pred ccHHHHHHHHHHHhHhhchhhhhhcCCCceEEEee-cCCceee
Q 030414 135 DRAEEAASYVRSEYFELQPELASQLNADSAVLICK-PGDCARV 176 (177)
Q Consensus 135 ~~~~~v~~~l~~~y~~~~~~~~~~~g~~~~~~~~~-~~~Ga~~ 176 (177)
+..++.++.+.+++.+. | .+.|.++ .+.|+++
T Consensus 349 ~~~~~~~~~l~~~l~~~--------G--~~~~~~~~g~~Gv~~ 381 (387)
T PLN02677 349 LLSGTVVDKVIAELESS--------G--FQCFTAGIGGNGVQI 381 (387)
T ss_pred ccchhHHHHHHHHHHHC--------C--CeEEEEEeCCCceEE
Confidence 54444455555555543 4 4556766 5666655
No 16
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.61 E-value=5.9e-15 Score=129.33 Aligned_cols=81 Identities=22% Similarity=0.265 Sum_probs=69.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhhhhc-----ccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccc-cH
Q 030414 64 VAKGLEAWKSGNSQDFGKLISASGLSSIYN-----YECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RA 137 (177)
Q Consensus 64 v~~~~~aL~~~d~~~~G~lm~~sh~slr~~-----~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~-~~ 137 (177)
+.++.++|+.+|++.||++|+++|..|+.. .+||+|++|.|++.+++ .|+ |+|+||||+|||+|+|++++ ..
T Consensus 258 ~~~~~~al~~~d~~~lg~~~~~~~~lL~~l~~~~~~~vs~~~l~~li~~a~~-~ga-~aKlsGAGgGg~~ial~~~~~~~ 335 (358)
T TIGR01220 258 VESAITAFETGDITSLQKEIRRNRQELARLDDEVGVGIETEKLKALCDAAEA-YGG-AAKPSGAGGGDCGIAILDAEADI 335 (358)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHhh-cCc-eecCCCCCCcCEEEEEeCCchhH
Confidence 557889999999999999999999988753 48999999999999997 897 99999999999999999764 45
Q ss_pred HHHHHHHHH
Q 030414 138 EEAASYVRS 146 (177)
Q Consensus 138 ~~v~~~l~~ 146 (177)
+++.++|++
T Consensus 336 ~~~~~~~~~ 344 (358)
T TIGR01220 336 THVRQRWET 344 (358)
T ss_pred HHHHHHHHH
Confidence 555555554
No 17
>PRK03926 mevalonate kinase; Provisional
Probab=99.60 E-value=2.3e-14 Score=121.90 Aligned_cols=96 Identities=25% Similarity=0.390 Sum_probs=81.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccccHHHHHHHH
Q 030414 65 AKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYV 144 (177)
Q Consensus 65 ~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~~~~~v~~~l 144 (177)
..+..++.++|++.||++|+++|.. .+.+++++|+++++++.+++ .|++|+||||+|+|||+++|++++..+++.+.+
T Consensus 202 ~~~~~al~~~d~~~l~~~~~~~~~~-~~~~~~~~p~l~~l~~~~~~-~ga~ga~lSGaG~Gg~v~~l~~~~~~~~~~~~~ 279 (302)
T PRK03926 202 EKGEELILSGDYVSLGELMNINQGL-LDALGVSTKELSELIYAART-AGALGAKITGAGGGGCMVALAAPEKQSEVATAI 279 (302)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHh-CCCceeeeccCCCCCEEEEEeccccHHHHHHHH
Confidence 3556888999999999999999964 45689999999999999997 899999999999999999999988888888877
Q ss_pred HHHhHhhchhhhhhcCCCceEEEeec-CCceee
Q 030414 145 RSEYFELQPELASQLNADSAVLICKP-GDCARV 176 (177)
Q Consensus 145 ~~~y~~~~~~~~~~~g~~~~~~~~~~-~~Ga~~ 176 (177)
.+. ...+|++++ .+|+++
T Consensus 280 ~~~--------------~~~~~~~~~~~~G~~i 298 (302)
T PRK03926 280 KIA--------------GGKPIITKITDEGLRI 298 (302)
T ss_pred Hhc--------------CCeEEEEecCCCeeEE
Confidence 642 145688886 568875
No 18
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=99.58 E-value=1.2e-14 Score=140.27 Aligned_cols=82 Identities=17% Similarity=0.244 Sum_probs=71.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhhhhc-ccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEec-cccHHHHH
Q 030414 64 VAKGLEAWKSGNSQDFGKLISASGLSSIYN-YECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVD-ADRAEEAA 141 (177)
Q Consensus 64 v~~~~~aL~~~d~~~~G~lm~~sh~slr~~-~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~-~~~~~~v~ 141 (177)
+.++.+||+++|++.||++|+++|..++.. .+||+|++|.|++.|++ |++|+|+||||+|||+|+|++ ++..+++.
T Consensus 868 a~ea~~ALe~gD~~~LG~LMn~~w~ll~~L~~GVSnp~LD~Li~~A~~--gAlGaKLTGAGGGGcvI~Lak~~~~a~~I~ 945 (974)
T PRK13412 868 ALDMYEAIQRGEFEEFGRLVGKTWEQNKALDSGTNPAAVEAIIELIKD--YTLGYKLPGAGGGGYLYMVAKDPGAAERIR 945 (974)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHc--CCcEEEecccCcccEEEEEECChhhHHHHH
Confidence 567889999999999999999999887653 59999999999999964 799999999999999999994 55677888
Q ss_pred HHHHHH
Q 030414 142 SYVRSE 147 (177)
Q Consensus 142 ~~l~~~ 147 (177)
+++++.
T Consensus 946 ~~L~~~ 951 (974)
T PRK13412 946 KILTEN 951 (974)
T ss_pred HHHHhc
Confidence 888753
No 19
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=99.56 E-value=3.2e-14 Score=121.08 Aligned_cols=93 Identities=19% Similarity=0.273 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhhc-ccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEE
Q 030414 52 KRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYN-YECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLA 130 (177)
Q Consensus 52 ~R~~hvv~E~~Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~-~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~via 130 (177)
.++.|-+.+-. .++.++|-.+|+..||++|+++|+..+.. -++|+|.+|.|++.|++ +||+|+|++|||.||+++.
T Consensus 220 ~e~~~~mk~~A--~~~~~al~~nd~~~f~~~l~~gW~~KK~ls~~ISN~~IDriy~~A~~-~GA~~gKl~GaG~gGFllf 296 (333)
T COG2605 220 LEALHEMKALA--YEMKDALVRNDIPEFGQILDRGWEAKKKLSSRISNDAIDRIYELALK-NGAYGGKLSGAGGGGFLLF 296 (333)
T ss_pred HHHHHHHHHHH--HHHHHHHHhcchHHHHHHHHhHHHhhhhhccCcCcHHHHHHHHHHHh-cCchhceeeccCCccEEEE
Confidence 45566665544 57888999999999999999999998865 78999999999999998 9999999999999999999
Q ss_pred EeccccHHHHHHHHHHH
Q 030414 131 LVDADRAEEAASYVRSE 147 (177)
Q Consensus 131 Lv~~~~~~~v~~~l~~~ 147 (177)
+|++.+..+++++|.+.
T Consensus 297 ~~~p~k~~~l~r~l~~~ 313 (333)
T COG2605 297 FCDPSKRNELARALEKE 313 (333)
T ss_pred EeCccchHHHHHHHHHh
Confidence 99999999999999875
No 20
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=99.31 E-value=1.6e-11 Score=106.81 Aligned_cols=86 Identities=17% Similarity=0.219 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccccHHHHHHHHHHHhHhhchhhhh
Q 030414 78 DFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELAS 157 (177)
Q Consensus 78 ~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~~~~~v~~~l~~~y~~~~~~~~~ 157 (177)
.+.+||..||..| +..|||+|.+|.++..+++ .| +.+||||||+|||+|+|++++...+.++.+.++....
T Consensus 293 ~L~eLi~iNq~LL-~alGVsH~~le~v~~~t~k-~g-i~sKLTGAGgGGc~itlL~~~~~qe~i~~~ke~L~s~------ 363 (397)
T KOG1511|consen 293 KLEELIRINQDLL-DALGVSHPSLELVCTTTRK-LG-IHSKLTGAGGGGCVITLLKPGTEQEQIDKWKEELESH------ 363 (397)
T ss_pred HHHHHHHHhHHHH-HHhCCCcHHHHHHHHHHHH-hC-cceecccCCCCceEEEEECCCCchHHHHHHHHHHHhc------
Confidence 5999999999866 5689999999999999998 78 6889999999999999999998778888888776653
Q ss_pred hcCCCceEEEee-cCCceee
Q 030414 158 QLNADSAVLICK-PGDCARV 176 (177)
Q Consensus 158 ~~g~~~~~~~~~-~~~Ga~~ 176 (177)
| ..+|.+. -+.|+++
T Consensus 364 --g--f~v~~t~lGG~G~~v 379 (397)
T KOG1511|consen 364 --G--FEVFETELGGPGVSV 379 (397)
T ss_pred --C--cceeeccCCCCceEE
Confidence 3 5577776 5566665
No 21
>PRK01212 homoserine kinase; Provisional
Probab=99.14 E-value=4.6e-10 Score=95.58 Aligned_cols=106 Identities=22% Similarity=0.245 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcc-cCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccc
Q 030414 57 YFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNY-ECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD 135 (177)
Q Consensus 57 vv~E~~Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~-~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~ 135 (177)
.+.+..|+.....+|.++|++.+++.|+ +.+.+.+ ...+|+++++.+.+++ .|++|++|||+| +|+++|++++
T Consensus 194 ~~~~~~~~~~l~~al~~~d~~~~~~~~~---~~~~~~~~~~~~p~~~~i~~~~~~-~Ga~g~~~SGsG--ptv~~l~~~~ 267 (301)
T PRK01212 194 AVFNSSRAALLVAALYTGDYELAGRAMK---DVLHEPYRAKLIPGFAEVRQAALE-AGALGAGISGAG--PTVFALCDKE 267 (301)
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHhc---hhheHHhHHhhCCCHHHHHHHHHH-CCCeEEEEEchh--hheeEEeccc
Confidence 3445567777889999999999999984 3333344 2246999999999987 899999999988 9999999877
Q ss_pred cHHHHHHHHHHHhHhhchhhhhhcCCCceEEEeecCC-ceeeC
Q 030414 136 RAEEAASYVRSEYFELQPELASQLNADSAVLICKPGD-CARVI 177 (177)
Q Consensus 136 ~~~~v~~~l~~~y~~~~~~~~~~~g~~~~~~~~~~~~-Ga~~~ 177 (177)
..+++.+++.+.| .. +....+++++++. |+++.
T Consensus 268 ~~~~~~~~l~~~~-~~--------~~~~~~~~~~~~~~G~~~~ 301 (301)
T PRK01212 268 DAEKVADALQKAF-LQ--------GIEGFVHVLRLDTAGARVL 301 (301)
T ss_pred cHHHHHHHHHHhh-cc--------CCCeEEEEeccCCCceEeC
Confidence 6688888888776 21 6678999999665 88763
No 22
>PLN02451 homoserine kinase
Probab=99.08 E-value=1.7e-09 Score=95.60 Aligned_cols=105 Identities=18% Similarity=0.245 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEecc-ccHHH
Q 030414 61 NRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEE 139 (177)
Q Consensus 61 ~~Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~-~~~~~ 139 (177)
..|+.....+|.++|++.+++.|+..|.... ....++|+++++++.+++ .|++|++|||+| .|+++|++. +.+++
T Consensus 258 ~~~~~~l~~al~~~d~~~l~~~m~nD~~~e~-~r~~~~P~l~~l~~~~~~-~GA~ga~mSGSG--ptvfal~~~~~~a~~ 333 (370)
T PLN02451 258 CSQAAALVAAILQGDAVLLGEALSSDKIVEP-TRAPLIPGMEAVKKAALE-AGAYGCTISGAG--PTAVAVIDDEEKGEE 333 (370)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhHH-HHhhhCccHHHHHHHHHH-CCCeEEEEEccc--hheEEEEcCHHHHHH
Confidence 4555567789999999999999986542222 235679999999999997 899999999999 699999975 47889
Q ss_pred HHHHHHHHhHhhchhhhhhcCCCceEEEeecCC-ceee
Q 030414 140 AASYVRSEYFELQPELASQLNADSAVLICKPGD-CARV 176 (177)
Q Consensus 140 v~~~l~~~y~~~~~~~~~~~g~~~~~~~~~~~~-Ga~~ 176 (177)
+.+++.+.|.+.. ++...+++++++. |+++
T Consensus 334 i~~~l~~~~~~~~-------~~~~~~~~~~~d~~Ga~v 364 (370)
T PLN02451 334 VGERMVEAFRKAG-------NLKATASVKKLDRVGARL 364 (370)
T ss_pred HHHHHHHHHHHhc-------CCCceEEEeccCCCCeEE
Confidence 9999988886542 5788999999664 9876
No 23
>PTZ00299 homoserine kinase; Provisional
Probab=98.80 E-value=3.8e-08 Score=86.11 Aligned_cols=106 Identities=19% Similarity=0.135 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccC-C-ChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEec
Q 030414 56 HYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-G-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVD 133 (177)
Q Consensus 56 hvv~E~~Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~v-S-~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~ 133 (177)
..+.+..|+...+.+|.++|++.+.. |. +.+++.|.. . .|+++.+.+.+.+ .|++|+-|||+| .++++|++
T Consensus 201 dav~n~~~~~~lv~al~~~d~~ll~~-~~---D~lhep~R~~~liP~~~~v~~~~~~-~Ga~g~~lSGSG--PTv~al~~ 273 (336)
T PTZ00299 201 DAVFNISRTSILVLALSTGDLRMLKS-CS---DKLHEQQRSDALFPHFRPCVKAARE-AGAHYAFLSGAG--PSVCALVG 273 (336)
T ss_pred HHHHhhhHHHHHHHHHHhCCHHHHHh-ch---hcccCcccccccCccHHHHHHHHHH-CCCeEEEEEchh--hhheEEec
Confidence 56667777777889999999998864 42 457777875 5 8999999999987 899999999999 99999997
Q ss_pred c------------ccHHHHHHHHHHHhHhhchhhhhhcCCCceEEEeecCC-ceee
Q 030414 134 A------------DRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGD-CARV 176 (177)
Q Consensus 134 ~------------~~~~~v~~~l~~~y~~~~~~~~~~~g~~~~~~~~~~~~-Ga~~ 176 (177)
. +..+++.++|.+.|.+. |+..+++++.++. |+++
T Consensus 274 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~G~~~ 321 (336)
T PTZ00299 274 GRHGDPLTQPREERKAESVAEAMIKAAEAV--------GVAGRVIITQPSDQGVHL 321 (336)
T ss_pred cccccccccccchhHHHHHHHHHHHHHHHc--------CCceEEEEccCCCCCcEE
Confidence 2 34678999999888653 8899999999766 8876
No 24
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=98.77 E-value=6e-08 Score=83.04 Aligned_cols=102 Identities=19% Similarity=0.239 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhhccc-CCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccccHHH
Q 030414 61 NRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYE-CGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEE 139 (177)
Q Consensus 61 ~~Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~-vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~~~~~ 139 (177)
..++.....+|.+++++ +++.+.+.+ +.+.|. ..+|+++++++.+++ .|++|++|||+| +|+++|++++...+
T Consensus 198 ~~~~~~l~~al~~~~~~-l~~~~~~d~--l~e~~~~~l~p~l~~i~~~~~~-~Ga~g~~lSGsG--ptv~al~~~~~~~~ 271 (302)
T TIGR00191 198 LSHLAGLVHAIYQKKPD-LGAIMMKDR--IHQPYRESLIPNLFKIKQAALE-KGAYGITISGSG--PTILAMADEEFAEQ 271 (302)
T ss_pred HHHHHHHHHHHHcCCHH-HHHHHcccc--cchhhHhhhCCCHHHHHHHHHH-CCCeEEEEEchh--hhheEEecchhhHH
Confidence 34444456788888754 677766542 333333 348999999999997 899999999999 99999998775544
Q ss_pred HHHHHHHHhHhhchhhhhhcCCCceEEEeecCC-ceee
Q 030414 140 AASYVRSEYFELQPELASQLNADSAVLICKPGD-CARV 176 (177)
Q Consensus 140 v~~~l~~~y~~~~~~~~~~~g~~~~~~~~~~~~-Ga~~ 176 (177)
.+..+.+.+.. .+.+.++++++++. |+++
T Consensus 272 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~Ga~~ 301 (302)
T TIGR00191 272 KEQDLLEVLHK--------QGIEGTVHVLDFDNDGARV 301 (302)
T ss_pred HHHHHHHHHHh--------cCCCeEEEEcccCCCCeEe
Confidence 33333333332 26789999999655 8875
No 25
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.75 E-value=4.3e-08 Score=83.68 Aligned_cols=96 Identities=20% Similarity=0.254 Sum_probs=72.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccCC-ChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEecc-ccHHHH
Q 030414 63 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECG-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEA 140 (177)
Q Consensus 63 Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS-~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~-~~~~~v 140 (177)
++..+..++.++|++.+|+.|+. .+ +.+.++ +|+++++++.+++ .|++|++|||+| .++++|+++ +.++++
T Consensus 197 ~~~~~~~al~~~d~~~l~~~~~n---~l-e~~~~~~~p~l~~l~~~~~~-~Galga~lSGsG--~tv~~l~~~~~~~~~~ 269 (300)
T PRK03188 197 EPDPLLAALRAGDPAQLAPLLGN---DL-QAAALSLRPSLRRTLRAGEE-AGALAGIVSGSG--PTCAFLCADADSAVDV 269 (300)
T ss_pred cHHHHHHHHHcCCHHHHHHHhhC---cC-HHHHHHhCchHHHHHHHHHH-CCCCEEEEEccc--cceEEEeCCHHHHHHH
Confidence 35678889999999999999863 23 345565 9999999999997 899999999999 567888875 446666
Q ss_pred HHHHHHHhHhhchhhhhhcCCCceEEEee-cCCceeeC
Q 030414 141 ASYVRSEYFELQPELASQLNADSAVLICK-PGDCARVI 177 (177)
Q Consensus 141 ~~~l~~~y~~~~~~~~~~~g~~~~~~~~~-~~~Ga~~~ 177 (177)
.+.+.+. |....+++++ ...|++|+
T Consensus 270 ~~~l~~~------------g~~~~~~~~~~~~~~~~~~ 295 (300)
T PRK03188 270 AAALSGA------------GVCRTVRVATGPVPGARVV 295 (300)
T ss_pred HHHHHhc------------CcceeEEEeeccccceEec
Confidence 6666541 5556677744 66777764
No 26
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=98.67 E-value=3e-07 Score=79.23 Aligned_cols=109 Identities=26% Similarity=0.305 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccCC-ChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEe
Q 030414 54 AEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECG-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALV 132 (177)
Q Consensus 54 ~~hvv~E~~Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS-~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv 132 (177)
-...+....|+.-++.||.++|.+.+...|. +-+.+.|+.+ .|..+++.+.+.+ .|+||+-++|+| .++++++
T Consensus 187 ~~daV~n~s~~a~lv~al~~~~~~l~~~~~~---D~ihepyR~~L~P~~~~v~~~a~~-~gA~g~~lSGAG--PTi~al~ 260 (299)
T COG0083 187 RKDAVFNLSRAALLVAALLEGDPELLRAMMK---DVIHEPYRAKLVPGYAEVREAALE-AGALGATLSGAG--PTVFALA 260 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHhc---cccchhhhhhhCccHHHHHHHHhh-CCceEEEEecCC--CeEEEEe
Confidence 3566778889999999999999666555555 6678889988 7999999999998 999999999999 9999999
Q ss_pred ccccHHHHHHHHHHHhHhhchhhhhhcCCCceEEEee-cCCceeeC
Q 030414 133 DADRAEEAASYVRSEYFELQPELASQLNADSAVLICK-PGDCARVI 177 (177)
Q Consensus 133 ~~~~~~~v~~~l~~~y~~~~~~~~~~~g~~~~~~~~~-~~~Ga~~~ 177 (177)
++...+...+.++ .++.+ +....++++. +++|++++
T Consensus 261 ~~~~~e~~~~~~~-~~~~~--------~~~~~~~~~~~~~~G~~~v 297 (299)
T COG0083 261 DESDAEKAAALLE-ELYEQ--------GIKGRVHILALDSDGARVV 297 (299)
T ss_pred ccchhhHHHHHHH-HHHHh--------CCcceEEEEeecCCcceEe
Confidence 8873344444444 44443 5567777766 88887653
No 27
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.61 E-value=6.8e-08 Score=83.05 Aligned_cols=100 Identities=22% Similarity=0.316 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHH-hCCCCceeEeecCCCCceEEEEeccc-cHH
Q 030414 61 NRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQ-RAPGVFGARFSGAGFRGCCLALVDAD-RAE 138 (177)
Q Consensus 61 ~~Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~-~~~Ga~GaK~tGaG~GG~viaLv~~~-~~~ 138 (177)
..+......+|.++|++.+++.| |+.++....-..|++.++.+.++ + .|++|+.|||+| +|+++|++.+ .++
T Consensus 208 ~~~~~~l~~al~~~d~~~~~~~~---~n~l~~~~~~~~~~i~~~~~~l~~~-~Ga~~~~lSGsG--ptv~~l~~~~~~a~ 281 (312)
T PRK02534 208 ALRSGPLLQAISAKDPPPIAQLL---HNDLEKVVLPEYPQVAKLLELLSSL-PGCLGTMMSGSG--PTCFALFESQEQAE 281 (312)
T ss_pred ccchhHHHHhhhccCHHHHHHhh---hCchHHHhHhcChHHHHHHHHHHhc-cCCCeeEEECcC--cceEEEeCCHHHHH
Confidence 33444567888999999998876 45566554446899999988887 6 899999999998 9999999864 677
Q ss_pred HHHHHHHHHhHhhchhhhhhcCCCceEEEeecC-Cceee
Q 030414 139 EAASYVRSEYFELQPELASQLNADSAVLICKPG-DCARV 176 (177)
Q Consensus 139 ~v~~~l~~~y~~~~~~~~~~~g~~~~~~~~~~~-~Ga~~ 176 (177)
++.+++.+.|.. ....++++++. .|+++
T Consensus 282 ~~~~~l~~~~~~----------~~~~v~i~~~~n~G~~v 310 (312)
T PRK02534 282 QALEQVREAFAD----------PGLDAWVCQFISHGIQL 310 (312)
T ss_pred HHHHHHHHHhcc----------CceEEEEEEecCCCcee
Confidence 788887765432 23478888854 48765
No 28
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.60 E-value=9.5e-08 Score=80.90 Aligned_cols=77 Identities=22% Similarity=0.239 Sum_probs=63.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccCC-ChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccc-cHHHHH
Q 030414 64 VAKGLEAWKSGNSQDFGKLISASGLSSIYNYECG-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAA 141 (177)
Q Consensus 64 v~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS-~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~-~~~~v~ 141 (177)
+..+..++.++|++.++++|+ ..+ +.++++ .|+++++++.+++ .|++|++|||+| +|+++|++.+ ..+++.
T Consensus 194 ~~~~~~~l~~~d~~~~~~~~~---n~l-~~~~~~~~p~l~~l~~~~~~-~Ga~g~~lSGsG--~sv~~l~~~~~~~~~i~ 266 (286)
T PRK00128 194 TEKLIEAIEEGDYQGICANMG---NVL-ENVTLKKYPEIAKIKERMLK-FGADGALMSGSG--PTVFGLFDDESRAQRIY 266 (286)
T ss_pred hHHHHHHHhcCCHHHHHHhcc---CcH-HHHHHhhChHHHHHHHHHHh-cCCCeeEEcccC--ccEEEEeCCHHHHHHHH
Confidence 456778889999999999986 334 567775 8999999999997 899999999999 9999999764 577777
Q ss_pred HHHHHH
Q 030414 142 SYVRSE 147 (177)
Q Consensus 142 ~~l~~~ 147 (177)
+++++.
T Consensus 267 ~~l~~~ 272 (286)
T PRK00128 267 NGLKGF 272 (286)
T ss_pred HHhHhh
Confidence 777653
No 29
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=98.49 E-value=5.1e-07 Score=76.15 Aligned_cols=73 Identities=21% Similarity=0.166 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccccHHHHH
Q 030414 62 RRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAA 141 (177)
Q Consensus 62 ~Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~~~~~v~ 141 (177)
..+.++.++++.+|+. ++|+.+|..+....+++++ +++.+++ .|++|++|||+ |||+++|+++. +++.
T Consensus 181 ~~~~~~~~~~~~~~l~---~am~~n~~l~~~~lg~~~~----~i~~a~~-~Galga~lSGa--G~sv~aL~~~~--~~v~ 248 (261)
T TIGR01920 181 PVVEEAFNLALRGEYL---KAMVLNGVAYATALGYPLE----PASKALE-AGAAAAGLSGK--GPSYFALTEDP--EEAA 248 (261)
T ss_pred hHHHHHHHHHhhCCHH---HHHhhChHHhHHhhCCChH----HHHHHHH-cCCcEEeecCC--CCeEEEEeCCH--HHHH
Confidence 4455667788889886 8899999654345778775 4466776 89999999997 59999998755 6777
Q ss_pred HHHHH
Q 030414 142 SYVRS 146 (177)
Q Consensus 142 ~~l~~ 146 (177)
++|++
T Consensus 249 ~~~~~ 253 (261)
T TIGR01920 249 EALME 253 (261)
T ss_pred HHHHh
Confidence 77765
No 30
>PRK01123 shikimate kinase; Provisional
Probab=98.22 E-value=9.9e-06 Score=68.84 Aligned_cols=87 Identities=21% Similarity=0.226 Sum_probs=59.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccccHHHHHHHH
Q 030414 65 AKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYV 144 (177)
Q Consensus 65 ~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~~~~~v~~~l 144 (177)
.++.++++.+|+. ++|+.++...+...++++ .++..+++ .|++|+++||+ |||+++|++.+..+++.++|
T Consensus 194 d~~~~~~~~~~l~---~~~~~~~l~~~~~l~~~~----~~i~~a~~-~Ga~ga~lSGa--Gptv~al~~~~~~~~v~~~l 263 (282)
T PRK01123 194 DMAFELALDGEYF---KAMTLNGLLYSSALGFPT----EPALEALE-AGAVGVGLSGT--GPSYVAIVDEEDPEEVKEAW 263 (282)
T ss_pred HHHHHHHhhccHH---HHHHhCCchhhhhhCCCh----HHHHHHHH-CCCeEEEEecC--CCeEEEEeCCCCHHHHHHHH
Confidence 3444555667774 777776543333455664 33455676 89999999986 49999999988888888888
Q ss_pred HHHhHhhchhhhhhcCCCceEEEeec-CCceee
Q 030414 145 RSEYFELQPELASQLNADSAVLICKP-GDCARV 176 (177)
Q Consensus 145 ~~~y~~~~~~~~~~~g~~~~~~~~~~-~~Ga~~ 176 (177)
++. .+++++++ ..|+++
T Consensus 264 ~~~---------------~~~~~~~~~~~G~~v 281 (282)
T PRK01123 264 EKY---------------GKVIVTKINNEGARI 281 (282)
T ss_pred HhC---------------CEEEEeeecCCCcee
Confidence 752 45667774 567765
No 31
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.17 E-value=6.7e-06 Score=70.64 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=61.4
Q ss_pred HHHHHHHHhCCCHHHHHHHH-HHHHHhhhhcccCC-ChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEecc-ccHHHH
Q 030414 64 VAKGLEAWKSGNSQDFGKLI-SASGLSSIYNYECG-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEA 140 (177)
Q Consensus 64 v~~~~~aL~~~d~~~~G~lm-~~sh~slr~~~~vS-~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~-~~~~~v 140 (177)
......+|.++|++.+...| |. + +.+..+ .|+++++.+.+++ .|++|++|||+| +|++++++. +.++++
T Consensus 208 ~~~~~~al~~~~~~~l~~~l~nd----l-e~~~~~l~P~~~~i~~~~~~-~Ga~~~~mSGSG--ptvf~l~~~~~~a~~~ 279 (297)
T PRK14613 208 SEDLISSLKVGDWVSLQGRLEND----F-EPVAFQLHPELGVLKDKFLE-FGSSYCSLTGSG--SSMYGLVQGLEIQEEL 279 (297)
T ss_pred HHHHHHHHHcCCHHHHHHHhccc----c-hHHHHHhCcHHHHHHHHHHH-cCCCEEEEEccc--cceEEEeCCHHHHHHH
Confidence 34567788899999875543 43 3 333333 8999999999987 899999999996 999999986 568888
Q ss_pred HHHHHHHhHh
Q 030414 141 ASYVRSEYFE 150 (177)
Q Consensus 141 ~~~l~~~y~~ 150 (177)
.+.+++.|.+
T Consensus 280 ~~~l~~~~~~ 289 (297)
T PRK14613 280 LPRLRQEFSN 289 (297)
T ss_pred HHHHHHhhcc
Confidence 8888876654
No 32
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=98.17 E-value=4.1e-05 Score=66.61 Aligned_cols=96 Identities=17% Similarity=0.160 Sum_probs=72.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHh----hhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccccHHHHH
Q 030414 66 KGLEAWKSGNSQDFGKLISASGLS----SIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAA 141 (177)
Q Consensus 66 ~~~~aL~~~d~~~~G~lm~~sh~s----lr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~~~~~v~ 141 (177)
+.+.+|.++|++.|++.|++-+.. +.+.|. .|.+..+++.+.+ ++|+-|||+| .++++|++.+ .+++.
T Consensus 224 ~l~~al~~~d~~~~~~~l~d~~~~~f~~~~~~~r--~~li~~~~~~l~~---a~g~~iSGsG--PTv~al~~~~-~~~~~ 295 (324)
T TIGR00144 224 KMMPAVVEGDLDAFGESVNEIQGLGFKKIERELQ--DPLIKRIIDSMIS---APGAGMSSFG--PTVYAVTDEK-PGNIA 295 (324)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhhcchhhhcccc--CHHHHHHHHHHHh---ccCceecCCC--CeEEEEecCc-hHHHH
Confidence 358999999999999999863321 222233 7778887777654 4888998877 9999999764 77888
Q ss_pred HHHHHHhHhhchhhhhhcCCCceEEEeecC-CceeeC
Q 030414 142 SYVRSEYFELQPELASQLNADSAVLICKPG-DCARVI 177 (177)
Q Consensus 142 ~~l~~~y~~~~~~~~~~~g~~~~~~~~~~~-~Ga~~~ 177 (177)
+++.+.|.. .|+...++++++. .|+++.
T Consensus 296 ~~~~~~~~~--------~~~~~~~~~~~~~n~Ga~v~ 324 (324)
T TIGR00144 296 GAVADIFGP--------YGVYGRIIVTKARNRGAFII 324 (324)
T ss_pred HHHHHHhhh--------CCCceEEEEEccCCCCCEeC
Confidence 888876654 2788999999976 598873
No 33
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=98.07 E-value=0.00013 Score=62.70 Aligned_cols=124 Identities=14% Similarity=0.116 Sum_probs=96.1
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhh---hhcc--cCCChHHHHHHHHHHh
Q 030414 36 EEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSS---IYNY--ECGSEPLIQLNEILQR 110 (177)
Q Consensus 36 ~~~l~~~~~~l~~~~~~R~~hvv~E~~Rv~~~~~aL~~~d~~~~G~lm~~sh~sl---r~~~--~vS~pelD~lv~~a~~ 110 (177)
+.++..-..-++.+..+++.|++- ..++.|+..+|++.||+-|++=|... .+.. +.-|+.+..+++.+.+
T Consensus 181 E~~if~~~~p~p~~~~~~ls~~vL-----m~mmPavvE~Die~fg~~l~~iQ~l~g~~f~~~e~~~~~~~V~~iv~~m~~ 255 (312)
T COG1907 181 EVDIFKKYCPVPLEEVGELSHRVL-----MKMMPAVVERDIESFGEALNEIQELGGKWFKKVEGGLQREDVKEIVDEMVE 255 (312)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHH-----HHHhHHHHhhCHHHHHHHHHHHHHHHhhhhhhhhceeccHHHHHHHHHHHH
Confidence 444444444578888888888775 56788999999999999999988766 3333 3458999999999998
Q ss_pred CCCCceeEeecCCCCceEEEEeccccHHHHHHHHHHHhHhhchhhhhhcCCCceEEEeec-CCceee
Q 030414 111 APGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKP-GDCARV 176 (177)
Q Consensus 111 ~~Ga~GaK~tGaG~GG~viaLv~~~~~~~v~~~l~~~y~~~~~~~~~~~g~~~~~~~~~~-~~Ga~~ 176 (177)
+ +||+-+| -||.++.++++.....+++..+.+.+.+. |+...+++++| ..|+.+
T Consensus 256 -~-a~~agqS--SwGPtvY~i~d~~~~~~~~~~~~~~~~~~--------g~~gev~vT~~rN~Ga~i 310 (312)
T COG1907 256 -A-AYGAGQS--SWGPTVYGIVDSREAGSVVRKLIDILLEE--------GIGGEVFVTKARNRGAEI 310 (312)
T ss_pred -h-ccccccc--ccCCEEEEeccccccchHHHHHHHHHHhc--------CCceEEEEeccCCCCcee
Confidence 5 7887664 48899999999988888888888776653 88999999995 456554
No 34
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=97.92 E-value=0.00028 Score=64.22 Aligned_cols=74 Identities=15% Similarity=0.056 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHHhhhhc---c--cCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccccHHHHHHHHHHHhH
Q 030414 75 NSQDFGKLISASGLSSIYN---Y--ECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYF 149 (177)
Q Consensus 75 d~~~~G~lm~~sh~slr~~---~--~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~~~~~v~~~l~~~y~ 149 (177)
|+..+.+.|.++-..|++. - .+-+|++-.|.+.+.+..||+||+..|||+|-|+++|+..+. ++++.+.+.+.
T Consensus 353 ~~~~i~~~i~~~R~~Lr~~~~~sgv~IEp~~~t~Lld~~~~~~Gvl~a~vpGAGGgDa~~~l~~~~~--~~~~~~~~~W~ 430 (454)
T TIGR01219 353 ELLEAREAMLRIRRLMRQITEEASVDIEPESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGDV--DSGTKLTQAWS 430 (454)
T ss_pred cHHHHHHHHHHHHHHHHHhhHhcCCcccCHHHHHHHHHHhhcCCeeEeecCCCCccceEEEEecCCh--HHHHHHHHHHh
Confidence 7888888888888777633 2 345799999999999888999999999999999999986653 25556666664
Q ss_pred h
Q 030414 150 E 150 (177)
Q Consensus 150 ~ 150 (177)
+
T Consensus 431 ~ 431 (454)
T TIGR01219 431 S 431 (454)
T ss_pred h
Confidence 4
No 35
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=97.81 E-value=9.4e-05 Score=63.34 Aligned_cols=73 Identities=19% Similarity=0.080 Sum_probs=49.7
Q ss_pred HHhCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEecccc-HHHHHHHHHHHh
Q 030414 70 AWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAASYVRSEY 148 (177)
Q Consensus 70 aL~~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~~-~~~v~~~l~~~y 148 (177)
++..+++..+... .|..+...-.-++|+++++.+.+++ .|++|++|||+| +|+++|++.+. ++.+.+.+++.+
T Consensus 202 ~~~~~~~~~~~~~---~~ndle~~~~~~~p~l~~i~~~l~~-~Ga~~a~mSGSG--~tvf~l~~~~~~a~~~~~~~~~~~ 275 (293)
T TIGR00154 202 KISLECLQLLDSN---GLNDLEKVALKRHTEVAQALNWLLE-YGLAPERLSGSG--ACVFALFDMESEAEQVLEQAPEWL 275 (293)
T ss_pred HHhhccHHHHhhh---hcCccHHHHHhcCHHHHHHHHHHHh-CCCCeEEEeccc--cceEEEeCCHHHHHHHHHHhHHHh
Confidence 3444455443322 2334433222368999999999987 899999999996 99999998653 666666665443
No 36
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.74 E-value=4.5e-05 Score=64.80 Aligned_cols=46 Identities=26% Similarity=0.350 Sum_probs=40.0
Q ss_pred ChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEecccc-HHHHHHHHHH
Q 030414 98 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAASYVRS 146 (177)
Q Consensus 98 ~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~~-~~~v~~~l~~ 146 (177)
.|+++++++.+++ .|++|++|||+| ||+++|++.+. ++++.+.+.+
T Consensus 222 ~p~l~~i~~~~~~-~Galga~lSGSG--~tv~~l~~~~~~~~~~~~~l~~ 268 (280)
T PRK14614 222 FPVIGEIKEELLA-AGARGSLMSGSG--STVFGLFDDEAAARAAAEELSR 268 (280)
T ss_pred ChHHHHHHHHHHh-CCCCEEEEeccc--cceEEEeCCHHHHHHHHHHhhh
Confidence 7999999999998 899999999997 99999998765 6666666665
No 37
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.65 E-value=5.8e-05 Score=63.88 Aligned_cols=75 Identities=24% Similarity=0.315 Sum_probs=53.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccc-cHHHHH
Q 030414 63 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAA 141 (177)
Q Consensus 63 Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~-~~~~v~ 141 (177)
++.....+|.++|...+. | .+........|+++++.+.+++ .|++|++|||+| +|+++|++.+ .++++.
T Consensus 189 ~~~~l~~~l~~~d~~~~~---n----~l~~~~~~~~p~l~~i~~~l~~-~Ga~~~~lSGsG--ptvfal~~~~~~a~~~~ 258 (276)
T PRK14612 189 DVEAILAALARGEEPPYW---N----SLEGPVFARHPELQEVLAALRA-AGLRGVLMSGSG--STCFGLAEDAAQAQRAA 258 (276)
T ss_pred cHHHHHHHHHhccccccc---C----CcHHHHHHhChHHHHHHHHHHh-CCCCEEEEcCcc--hhhEEEeCCHHHHHHHH
Confidence 345566677777632211 1 1222233478999999999987 899999999999 8999999764 467777
Q ss_pred HHHHHH
Q 030414 142 SYVRSE 147 (177)
Q Consensus 142 ~~l~~~ 147 (177)
+.+++.
T Consensus 259 ~~l~~~ 264 (276)
T PRK14612 259 AALRAR 264 (276)
T ss_pred HHhHhh
Confidence 777653
No 38
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.56 E-value=0.00026 Score=60.29 Aligned_cols=77 Identities=21% Similarity=0.291 Sum_probs=55.7
Q ss_pred HHHHHh-CCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEecc-ccHHHHHHHH
Q 030414 67 GLEAWK-SGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYV 144 (177)
Q Consensus 67 ~~~aL~-~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~-~~~~~v~~~l 144 (177)
...++. .++++.++.++|.- +..+. --.|+++++.+.+++ .|++|+.|||+| .|+++|+++ +.++++.+.+
T Consensus 198 l~~~l~~~~~~~l~~~~~nD~-e~~~~---~l~p~l~~v~~~~~~-~Galg~~lSGSG--ptv~al~~~~~~a~~i~~~l 270 (287)
T PRK14616 198 LVRRLCLDGDTSVLPAFENDF-ESAVF---DHYPAVRKVKDDLLE-AGSFFASLSGSG--SAVFGLFENEADAEAAAEMM 270 (287)
T ss_pred HHHHHhcCCHHHHHHHhcCcc-HHHHH---HhChHHHHHHHHHHh-CCCCeEEEeccc--ccceEEeCCHHHHHHHHHHh
Confidence 344444 35666666555421 11121 127999999999987 899999999999 799999987 5688888888
Q ss_pred HHHhHh
Q 030414 145 RSEYFE 150 (177)
Q Consensus 145 ~~~y~~ 150 (177)
++.|..
T Consensus 271 ~~~~~~ 276 (287)
T PRK14616 271 RARYRT 276 (287)
T ss_pred HHhCcc
Confidence 887765
No 39
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.41 E-value=0.00025 Score=60.88 Aligned_cols=47 Identities=30% Similarity=0.411 Sum_probs=40.7
Q ss_pred CChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEecc-ccHHHHHHHHHH
Q 030414 97 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYVRS 146 (177)
Q Consensus 97 S~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~-~~~~~v~~~l~~ 146 (177)
..|+++++.+.+.+ .|++|++|||+| +|+++|+++ +.++++.+++++
T Consensus 239 l~P~l~~~~~~~~~-~GAlga~mSGSG--ptvfaL~~~~~~a~~i~~~l~~ 286 (296)
T PRK14615 239 AHPELRRLKETLLR-HGAAAALMSGSG--SSVFGLFRRRAQAEAAFEMLKG 286 (296)
T ss_pred hChHHHHHHHHHHh-cCCCEEEEeccC--cceEEEeCCHHHHHHHHHHHhh
Confidence 68999999999987 899999999999 999999875 456777777765
No 40
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=97.10 E-value=0.0034 Score=53.73 Aligned_cols=104 Identities=25% Similarity=0.324 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CHHHHHH-HHHHHHHhhhhcccCC-ChHHHHHHHHHHhC--CCCceeEeecCCCCc
Q 030414 52 KRAEHYFTENRRVAKGLEAWKSG-NSQDFGK-LISASGLSSIYNYECG-SEPLIQLNEILQRA--PGVFGARFSGAGFRG 126 (177)
Q Consensus 52 ~R~~hvv~E~~Rv~~~~~aL~~~-d~~~~G~-lm~~sh~slr~~~~vS-~pelD~lv~~a~~~--~Ga~GaK~tGaG~GG 126 (177)
.+..| +.+.+|......||-.+ |-..++. +|. +-.++.|+-+ .|.+..+...+... +|.+|.-++||| .
T Consensus 237 p~~d~-V~NlqrlA~LttAl~~~p~n~~L~y~~m~---DkvhqPyRa~LIPGl~~il~~~~p~t~pGl~GiclSGAG--P 310 (355)
T KOG1537|consen 237 PMVDH-VWNLQRLAALTTALLEGPDNVMLGYALMS---DKVHQPYRAPLIPGLEAILKAALPATYPGLFGICLSGAG--P 310 (355)
T ss_pred cceee-eecHHHHHHHHHHHhcCCCchhhhhhhhh---ccccCccccccCccHHHHHHhhCcccCCceeeEEecCCC--C
Confidence 34444 44777777777777666 5445554 444 4456788888 79999998888752 499999999998 9
Q ss_pred eEEEEeccccHHHHHHHHHHHhHhhchhhhhhcCCCceEEEeec
Q 030414 127 CCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKP 170 (177)
Q Consensus 127 ~viaLv~~~~~~~v~~~l~~~y~~~~~~~~~~~g~~~~~~~~~~ 170 (177)
+++||.. +.-+++.++|.++|.+. |.++.+-..+|
T Consensus 311 T~lAlat-enf~eI~~~mv~~F~K~--------G~kcs~~~l~p 345 (355)
T KOG1537|consen 311 TALALAT-ENFQEIGEKMVEAFWKV--------GHKCSVASLKP 345 (355)
T ss_pred eeEEEec-CcHHHHHHHHHHHHHhh--------CceeeeEeecc
Confidence 9999986 88999999999999885 89999988883
No 41
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=96.93 E-value=0.00091 Score=56.70 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=37.2
Q ss_pred HhhhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccc
Q 030414 88 LSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD 135 (177)
Q Consensus 88 ~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~ 135 (177)
..++.......|+++++.+.+++ .|++|++|||+| +|+++|++.+
T Consensus 209 Ndle~~~~~~~p~l~~i~~~l~~-~ga~~~~mSGSG--~tvf~l~~~~ 253 (269)
T PRK14609 209 NDFEDSVFPKYPEIAEIKEKLYR-SGALYAAMSGSG--SSVFGIFKKP 253 (269)
T ss_pred CChHHHHHHcChHHHHHHHHHHh-CCCCeEEEeCcc--ceeEEEECCh
Confidence 44554455668999999999987 899999999997 9999999753
No 42
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=96.90 E-value=0.0019 Score=55.28 Aligned_cols=47 Identities=30% Similarity=0.437 Sum_probs=40.1
Q ss_pred CChHHHHHHHHHHhCC-CCceeEeecCCCCceEEEEeccc-cHHHHHHHHHH
Q 030414 97 GSEPLIQLNEILQRAP-GVFGARFSGAGFRGCCLALVDAD-RAEEAASYVRS 146 (177)
Q Consensus 97 S~pelD~lv~~a~~~~-Ga~GaK~tGaG~GG~viaLv~~~-~~~~v~~~l~~ 146 (177)
.+|+++++.+.+++ . |++|++|||+| .++++|++++ .++++.+.+++
T Consensus 229 l~p~l~~i~~~~~~-~~Ga~~~~lSGSG--stvf~l~~~~~~a~~~~~~l~~ 277 (290)
T PRK14608 229 LAPVIGEVLAALRA-QPGALLARMSGSG--ATCFALFADEAAAEAAAAAIAA 277 (290)
T ss_pred cCcHHHHHHHHHHh-cCCCCeeEEeccc--cCeEEEeCCHHHHHHHHHHhHh
Confidence 48999999999987 8 99999999999 9999999764 46777777765
No 43
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=96.29 E-value=0.0096 Score=50.76 Aligned_cols=57 Identities=25% Similarity=0.419 Sum_probs=42.7
Q ss_pred HHhhhhcccCC-ChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEecc-ccHHHHHHHHHH
Q 030414 87 GLSSIYNYECG-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYVRS 146 (177)
Q Consensus 87 h~slr~~~~vS-~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~-~~~~~v~~~l~~ 146 (177)
|..+. .+..+ +|+++++.+..++..|++++.|||+| .|+++++++ +.++++.+.+.+
T Consensus 211 ~Ndle-~~~~~l~P~l~~~~~~l~~~~ga~~a~mSGSG--sTvf~l~~~~~~a~~~~~~l~~ 269 (283)
T PRK14610 211 RNDLL-ETAISLVPEIEEILFVLESLEGCILSRMSGSG--ATCFALFEEEEAAEAAARYLKM 269 (283)
T ss_pred cCchH-HHHHHhChHHHHHHHHHHhcCCCceEEEeCcc--cceeEEeCCHHHHHHHHHHhhh
Confidence 44443 34445 89999999987654589999999999 899999876 456677766664
No 44
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=95.04 E-value=0.069 Score=45.15 Aligned_cols=66 Identities=11% Similarity=0.090 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEecc
Q 030414 62 RRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA 134 (177)
Q Consensus 62 ~Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~ 134 (177)
.+......++.++|++.++..|. +.+.+.+--..|++.++.+.... .| +|+.|||+| .+++++++.
T Consensus 189 ~~~~~l~~~l~~~~~~~~~~~~~---n~l~~~~~~~~P~l~~~~~~l~~-~~-~~~~~SGSG--~tvf~l~~~ 254 (275)
T PRK14611 189 EDLNIIISLLREGEEKKIEEVIE---NTLGEIALELYPEIKEVYRFLEY-LG-YKPFVSGSG--SSVYVFGKP 254 (275)
T ss_pred chHHHHHHHHHcCCHHHHHHhcC---CcccHHHHHHCHHHHHHHHHHHh-CC-CCEEEeCcc--ccceeEeCC
Confidence 45555678889999998877654 55666665568999999887654 45 589999999 999999843
No 45
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=94.06 E-value=0.65 Score=40.24 Aligned_cols=83 Identities=17% Similarity=0.083 Sum_probs=60.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccCCCh-------HH---HHHHHHHHhCCCCceeEeecCCCCceEEEEe
Q 030414 63 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSE-------PL---IQLNEILQRAPGVFGARFSGAGFRGCCLALV 132 (177)
Q Consensus 63 Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~p-------el---D~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv 132 (177)
++.++.+|+.++|++.||++...+-..++...--+.| +- =.+|...++ .|....-..=|| .-+..|+
T Consensus 212 ~l~~~~~ai~~~D~~~~g~~~e~~~~~mHa~~~~~~p~~~y~~~~s~~ii~~v~~~r~-~g~~~~~T~DAG--pNv~vl~ 288 (305)
T TIGR01240 212 DFEVXRKAIKTKDFATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVHTLRQ-GGTICYFTMDAG--PNVKVLY 288 (305)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCCCeEEECHHHHHHHHHHHHHHh-CCCcEEEEEcCC--CCEEEEE
Confidence 4778889999999999999998887777644323323 22 244555565 565555666666 8899999
Q ss_pred ccccHHHHHHHHHHHh
Q 030414 133 DADRAEEAASYVRSEY 148 (177)
Q Consensus 133 ~~~~~~~v~~~l~~~y 148 (177)
+++..+++.+.+.+.|
T Consensus 289 ~~~~~~~v~~~~~~~~ 304 (305)
T TIGR01240 289 LAENLSKLFEFIYKLF 304 (305)
T ss_pred ccccHHHHHHHHHHhc
Confidence 9999999998887654
No 46
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=93.30 E-value=0.51 Score=44.16 Aligned_cols=92 Identities=16% Similarity=0.200 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHH----HHHHHHHHhCCCHHHHHHHHHHHHHhhhhc-ccCCChHHHHHHHHHHhCCCCcee--EeecCCC
Q 030414 52 KRAEHYFTENRR----VAKGLEAWKSGNSQDFGKLISASGLSSIYN-YECGSEPLIQLNEILQRAPGVFGA--RFSGAGF 124 (177)
Q Consensus 52 ~R~~hvv~E~~R----v~~~~~aL~~~d~~~~G~lm~~sh~slr~~-~~vS~pelD~lv~~a~~~~Ga~Ga--K~tGaG~ 124 (177)
.|+.-++..... +.+.++-+++|.++.+|+++...|+..+-- .++..+...+|.+.... -..|- -..|||+
T Consensus 821 ar~~a~~Q~ah~l~~~tdecAegf~kGsl~LlgecL~~YweqKk~MapgCEPl~Vr~lldmLap--h~hgesgw~AGAGG 898 (948)
T KOG4644|consen 821 ARCKATKQKAHKLAEATDECAEGFEKGSLELLGECLEHYWEQKKFMAPGCEPLNVRELLDMLAP--HKHGESGWAAGAGG 898 (948)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhccCCCCCCCcHHHHHHHhcc--ccccccchhccCCC
Confidence 355555444433 345566778999999999999999876522 33444556677766542 22332 4789999
Q ss_pred CceEEEEeccccHHHHHHHHH
Q 030414 125 RGCCLALVDADRAEEAASYVR 145 (177)
Q Consensus 125 GG~viaLv~~~~~~~v~~~l~ 145 (177)
||++.-+.++.+..+-++++-
T Consensus 899 GGFiYLl~kEpqqkeaiEa~L 919 (948)
T KOG4644|consen 899 GGFIYLLIKEPQQKEAIEAFL 919 (948)
T ss_pred CcEEEEEecCCCCHHHHHHhh
Confidence 999999998876665555443
No 47
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=92.13 E-value=0.32 Score=41.24 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=36.5
Q ss_pred CChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccc-cHHHHHHHHHHHh
Q 030414 97 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAASYVRSEY 148 (177)
Q Consensus 97 S~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~-~~~~v~~~l~~~y 148 (177)
-.|+++++.+.+.+ .|+ +.|||+| .++++|++++ .++++.+.+++.|
T Consensus 216 ~~P~~~~~~~~l~~-~ga--~~mSGSG--~tvF~l~~~~~~a~~~~~~l~~~~ 263 (271)
T PRK00343 216 RYPEVAQALSWLLE-YAP--SRMTGTG--ACVFAEFDTEAEAEQVLAQLPEWL 263 (271)
T ss_pred hChHHHHHHHHHHh-CCC--eEEeccc--cceEEEcCCHHHHHHHHHHhhhhc
Confidence 36889998888876 788 8899999 9999999764 4666666666543
No 48
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=91.77 E-value=0.29 Score=42.26 Aligned_cols=47 Identities=26% Similarity=0.321 Sum_probs=35.5
Q ss_pred CChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEecccc-HHHHHHHHHH
Q 030414 97 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAASYVRS 146 (177)
Q Consensus 97 S~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~~-~~~v~~~l~~ 146 (177)
..|++........+ .|+.+++|||+| .|++++++.+. ++.+.+.+.+
T Consensus 224 ~~p~v~~~~~~l~~-~ga~~~~mSGSG--stvF~l~~~~~~a~~~~~~l~~ 271 (289)
T COG1947 224 LYPEVKEALSELLE-YGALPARMSGSG--STVFALFDTEKEAQRVAEQLPK 271 (289)
T ss_pred hChHHHHHHHHHhh-cccccceEecCC--CcEEEEeCChHHHHHHHHHhhc
Confidence 35788776656555 688899999999 99999998875 5665565554
No 49
>PLN02407 diphosphomevalonate decarboxylase
Probab=89.79 E-value=3.3 Score=36.68 Aligned_cols=95 Identities=21% Similarity=0.143 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccCCChHH----------HHHHHHHHhCCCC-ceeEee
Q 030414 52 KRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPL----------IQLNEILQRAPGV-FGARFS 120 (177)
Q Consensus 52 ~R~~hvv~E~~Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pel----------D~lv~~a~~~~Ga-~GaK~t 120 (177)
.|+.+++ ..++.++.+|++++|++.||++.-.+-..++...--+.|.+ =.+|+..++..|. ..+--.
T Consensus 227 ~w~~~~~--~~~~~~~~~Ai~~~Df~~~gei~e~ds~~mHA~~l~s~Pp~~Y~~~~S~~ii~~V~~~r~~~g~~~v~yT~ 304 (343)
T PLN02407 227 HRAKEVV--PKRILQMEEAIKNRDFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGTPQVAYTF 304 (343)
T ss_pred HHHHhhh--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEeChHHHHHHHHHHHHHHhcCCccEEEEe
Confidence 3444433 34567888999999999999999988777764432232222 2455555543353 234556
Q ss_pred cCCCCceEEEEeccccHHH-HHHHHHHHhHh
Q 030414 121 GAGFRGCCLALVDADRAEE-AASYVRSEYFE 150 (177)
Q Consensus 121 GaG~GG~viaLv~~~~~~~-v~~~l~~~y~~ 150 (177)
=|| .-+..|++++..++ |++++.+.|..
T Consensus 305 DAG--PNv~vl~~~~~~~~~v~~~~~~~~~~ 333 (343)
T PLN02407 305 DAG--PNAVLIALNRKVAAQLLQRLLYYFPP 333 (343)
T ss_pred cCC--CCEEEEEChhhhHHHHHHHHHHhcCC
Confidence 677 77888898888886 99888877653
No 50
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=89.74 E-value=8 Score=33.28 Aligned_cols=63 Identities=21% Similarity=0.162 Sum_probs=44.0
Q ss_pred hCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccccHHHHHHHHHH
Q 030414 72 KSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRS 146 (177)
Q Consensus 72 ~~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~~~~~v~~~l~~ 146 (177)
.+|+| .+.|.-|..-.-.-++... +++..+.+ .|+.++-++|-| .+.++++++. +++.+++.+
T Consensus 197 ~~G~~---~~Am~lNG~~y~~aLG~~~----e~~~~ale-~GA~~aglSGtG--Pa~~Al~~~~--~~v~ea~~~ 259 (278)
T COG1685 197 LKGEY---FKAMVLNGILYCSALGYDL----EPALKALE-AGAAAAGLSGTG--PAYFALTEDP--EEVAEAWSK 259 (278)
T ss_pred hcccH---HHHHHHhHHHHHHHhCCCh----HHHHHHHh-cccceeccCCCC--CceEEEecCc--HHHHHHHHh
Confidence 56777 5566666544444455554 34556666 799999998887 9999999777 677777664
No 51
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=89.62 E-value=0.83 Score=39.39 Aligned_cols=49 Identities=8% Similarity=0.061 Sum_probs=35.6
Q ss_pred ChHHHHHHHHHHhCCCC-ce--eEeecCCCCceEEEEeccc-cHHHHH-HHHHHHhH
Q 030414 98 SEPLIQLNEILQRAPGV-FG--ARFSGAGFRGCCLALVDAD-RAEEAA-SYVRSEYF 149 (177)
Q Consensus 98 ~pelD~lv~~a~~~~Ga-~G--aK~tGaG~GG~viaLv~~~-~~~~v~-~~l~~~y~ 149 (177)
.|++.++.+...+ .|+ +| ++|||+| .|++++++.+ ..+++. ..+++.|.
T Consensus 206 ~p~i~~~~~~l~~-~~~~~~~~~~MSGSG--st~F~l~~~~~~~~~~~~~~~~~~~~ 259 (288)
T PRK00650 206 RLDLKEKKHWLES-LWAELPVHVGLTGSG--ATLFVRYPEILEKDPSYAAQIQRAIT 259 (288)
T ss_pred ChHHHHHHHHHHh-ccccCCCeEEEeCcc--cCEEEEeCCHHHHHHHHHHHhHhhhh
Confidence 6899998888876 443 24 8899999 9999999773 455555 66665543
No 52
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=83.73 E-value=25 Score=31.06 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccCCC-------hHHHHH---HHHHHhCCCCceeEee
Q 030414 51 AKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGS-------EPLIQL---NEILQRAPGVFGARFS 120 (177)
Q Consensus 51 ~~R~~hvv~E~~Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~-------pelD~l---v~~a~~~~Ga~GaK~t 120 (177)
..|+.|....- .++..+++++|++.|+++...+-..++...--+. ++--.+ +...++. |-.-+=..
T Consensus 207 ~~w~~~~~~~~---~~m~~~~~~~Df~~i~~~~e~dsl~mHA~l~~s~p~~~y~~~~s~~ii~~v~~~r~~-g~~~~fT~ 282 (329)
T COG3407 207 DAWLEHSEEDL---EEMKEAIREKDFEKIGELAENDSLEMHATLMSSGPPFFYLTDESLRIIEFVHELRKE-GNAVYFTM 282 (329)
T ss_pred HHHHHHHHHhH---HHHHHHHhccCHHHHHHHHHhhHHHHHHHHhccCCceEEECccHHHHHHHHHHHHhc-CCceEEEE
Confidence 35666665433 4677888999999999999988777764322222 222233 3444432 32223344
Q ss_pred cCCCCceEEEEeccccHHHHHHHHHHHhH
Q 030414 121 GAGFRGCCLALVDADRAEEAASYVRSEYF 149 (177)
Q Consensus 121 GaG~GG~viaLv~~~~~~~v~~~l~~~y~ 149 (177)
=|| ..+..++..+...++.+.+.+.+.
T Consensus 283 DaG--PnV~v~~~~~~l~~~~~~~~~~~~ 309 (329)
T COG3407 283 DAG--PNVKVITLEENLIDLLEILKTLEC 309 (329)
T ss_pred cCC--CceEEEEecccHHHHHHHHhhccc
Confidence 444 899999999999999888876543
No 53
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=79.86 E-value=5.5 Score=26.15 Aligned_cols=48 Identities=19% Similarity=0.124 Sum_probs=40.1
Q ss_pred CCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccccHHHHHHHHHH
Q 030414 96 CGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRS 146 (177)
Q Consensus 96 vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~~~~~v~~~l~~ 146 (177)
++.+.+..|.+++++ .|.--.|+|... +..+.-++.+.++++.+.|.+
T Consensus 21 i~~~~l~~la~ia~~-yg~~~irlT~~Q--~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 21 ISAEQLRALAEIAEK-YGDGEIRLTTRQ--NLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp EEHHHHHHHHHHHHH-HSTSEEEEETTS--CEEEEEEEGGGHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHH-hCCCeEEECCCC--eEEEeCCCHHHHHHHHHHHHc
Confidence 456788899999987 676567999887 788888999999999998875
No 54
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=76.81 E-value=39 Score=29.11 Aligned_cols=65 Identities=17% Similarity=0.204 Sum_probs=48.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEecccc
Q 030414 66 KGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR 136 (177)
Q Consensus 66 ~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~~ 136 (177)
.+.+|++.+|...+|+.=.-|-..- + -..+-|-+++|.+.+.+ .+++|--+.-+ |+|+.|.=+..
T Consensus 201 ~v~~A~~~~~~~~lG~AAT~SAv~~-Q-~~LPK~~~~~lL~l~e~-~~~~Gv~VAHS---GtmlGli~D~~ 265 (293)
T COG4542 201 LVEKALKVGDPKLLGEAATLSAVKN-Q-DRLPKPGLNELLRLVEE-TCAIGVIVAHS---GTMLGLIYDRK 265 (293)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHhh-c-cccCchhHHHHHHHHHH-hcccceEEecc---CceEEeeeccc
Confidence 3456789999999999988776422 2 35788999999999887 67788777766 57888774433
No 55
>PRK05905 hypothetical protein; Provisional
Probab=74.82 E-value=3.4 Score=35.03 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=25.4
Q ss_pred ChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEe
Q 030414 98 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALV 132 (177)
Q Consensus 98 ~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv 132 (177)
+|++.++.+...+ .|+ .++|||+| .|++++-
T Consensus 223 ~P~i~~~~~~l~~-~g~-~a~MSGSG--stvF~l~ 253 (258)
T PRK05905 223 YPNLLYKYNELLN-DGF-YTILSGAG--SSFIVIK 253 (258)
T ss_pred ChHHHHHHHHHHh-CCC-CEEEeCcc--hhheEEe
Confidence 7999998888877 686 89999998 7777763
No 56
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=70.66 E-value=67 Score=28.64 Aligned_cols=96 Identities=19% Similarity=0.131 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccCCChHH----------HHHHHHHHhCCCC-ceeE
Q 030414 50 LAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPL----------IQLNEILQRAPGV-FGAR 118 (177)
Q Consensus 50 ~~~R~~hvv~E~~Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pel----------D~lv~~a~~~~Ga-~GaK 118 (177)
+..|+.++|- +|++++.+|+++.|++.|.++--.--..++..+==|.|.| -.+|+.-.+..|- .-|-
T Consensus 224 ~qhRi~~vVP--~Ri~~m~eaI~~rDF~~FA~lTm~DSNqFHAvclDT~PPI~YmNd~S~~iI~~vh~~N~~~G~t~vAY 301 (395)
T KOG2833|consen 224 LQHRIESVVP--QRIQQMREAIRERDFESFAKLTMKDSNQFHAVCLDTFPPIFYLNDTSWRIISLVHEFNASAGGTRVAY 301 (395)
T ss_pred HHHHHHhhhH--HHHHHHHHHHHhcCHHHHHHHHHhcchhhhhhhhccCCCeEEeccchHHHHHHHHHHHhccCCeeEEE
Confidence 3457777775 6788999999999999999985432223432211122222 2334443333444 3455
Q ss_pred eecCCCCceEEEEeccccHHHHHHHHHHHhH
Q 030414 119 FSGAGFRGCCLALVDADRAEEAASYVRSEYF 149 (177)
Q Consensus 119 ~tGaG~GG~viaLv~~~~~~~v~~~l~~~y~ 149 (177)
.--||=.-|++++ ++.+.++.+++-+.|.
T Consensus 302 TFDAGPNAvl~~l--~e~~~~~l~~~~~~f~ 330 (395)
T KOG2833|consen 302 TFDAGPNAVLIVL--EENVSQLLAAVLKVFP 330 (395)
T ss_pred EecCCCceEEEEh--hhhHHHHHHHHHHhcC
Confidence 6678877787777 4666677777776554
No 57
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=52.54 E-value=32 Score=29.26 Aligned_cols=39 Identities=21% Similarity=0.113 Sum_probs=31.6
Q ss_pred ccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEe
Q 030414 94 YECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALV 132 (177)
Q Consensus 94 ~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv 132 (177)
.|+|+.|||.+++......|++-+....-||.+.+-.-+
T Consensus 34 pGvtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~~ciSv 72 (255)
T COG0024 34 PGVTTLELDEIAEEFIREKGAYPAFLGYKGFPFPTCISV 72 (255)
T ss_pred CCCCHHHHHHHHHHHHHHcCceehhccCcCCCcceEeeh
Confidence 799999999999877666899999998888777654443
No 58
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=44.99 E-value=10 Score=15.35 Aligned_cols=6 Identities=33% Similarity=0.894 Sum_probs=4.1
Q ss_pred ecCCCC
Q 030414 120 SGAGFR 125 (177)
Q Consensus 120 tGaG~G 125 (177)
.|+|||
T Consensus 2 hgG~Wg 7 (8)
T PF03991_consen 2 HGGGWG 7 (8)
T ss_pred CCCcCC
Confidence 467776
No 59
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=44.78 E-value=43 Score=29.44 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=40.4
Q ss_pred ccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccccHHHHHHHHHH
Q 030414 94 YECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRS 146 (177)
Q Consensus 94 ~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~~~~~v~~~l~~ 146 (177)
.-+|.+.|-.++++|.+ .|.-..++|+-+ |..|-.++.++++++.+.|++
T Consensus 40 g~l~~e~Lr~i~diAek-yG~G~i~iT~rq--g~ei~~i~~e~~~~v~~~L~~ 89 (317)
T COG2221 40 GFLSAETLRKIADIAEK-YGDGLIHITSRQ--GLEIPGISPEDADDVVEELRE 89 (317)
T ss_pred CccCHHHHHHHHHHHHH-hCCCeEEEEecC--ceEeccCCHHHHHHHHHHHHH
Confidence 34567788888899987 786667888877 888888888999999988884
No 60
>cd06460 M32_Taq Peptidase family M32 is a subclass of metallocarboxypeptidases which are distributed mainly in bacteria and archaea, and contain a HEXXH motif that coordinates a divalent cation such as Zn2+ or Co2+, so far only observed in the active site of neutral metallopeptidases but not in carboxypeptidases. M32 includes the thermostable carboxypeptidases (E.C. 3.4.17.19) from Thermus aquaticus (TaqCP) and Pyrococcus furiosus (PfuCP), which have broad specificities toward a wide range of C-terminal substrates that include basic, aromatic, neutral and polar amino acids. These enzymes have a similar fold to the M3 peptidases such as neurolysin and the M2 angiotensin converting enzyme (ACE). Novel peptidases from protozoa Trypanosoma cruzi, a causative agent of Chagas' disease, and Leishmania major, a parasite that causes leishmaniasis, are the first eukaryotic M32 enzymes identified so far, thus making these enzymes an attractive potential target for drug development against these o
Probab=38.27 E-value=1.1e+02 Score=27.72 Aligned_cols=71 Identities=15% Similarity=0.107 Sum_probs=47.3
Q ss_pred HHHHHhcCcccccCCCHHHHHHhhccCCHHHH-------HHHHHHH--HHHHHHHHHHHHHhCCC--HHHHHHHHHHHHH
Q 030414 20 VILQLIMILIFFQTVEEEVYEAHKNELEPTLA-------KRAEHYF--TENRRVAKGLEAWKSGN--SQDFGKLISASGL 88 (177)
Q Consensus 20 ~~l~~~~g~~~Lr~v~~~~l~~~~~~l~~~~~-------~R~~hvv--~E~~Rv~~~~~aL~~~d--~~~~G~lm~~sh~ 88 (177)
+.+++.++.. +.+++.+++..+.+.+.|.+. --..|++ .|-++ +|.+|+ .+.+-+++++
T Consensus 217 ~~l~~~f~~~-~~~~~~e~~~~~~n~v~ps~iRveADEvty~lHiilR~e~Ek------~l~~G~l~v~dLp~~W~~--- 286 (396)
T cd06460 217 PKLKKTFPEQ-LKDVSLENFYRAVNRVQPSLIRVEADEVTYNLHIMLRYELEK------ALIEGDLEVADLPEAWNE--- 286 (396)
T ss_pred HHHHHHcccc-cccCCHHHHHHHHhhcCccceeeecchhhHHHHHHHHHHHHH------HHHcCCCCHHHHHHHHHH---
Confidence 3577777543 778999999888888776654 3445654 33333 566676 4788999885
Q ss_pred hhhhcccCCChH
Q 030414 89 SSIYNYECGSEP 100 (177)
Q Consensus 89 slr~~~~vS~pe 100 (177)
.+++.+|++.+.
T Consensus 287 ~~~eylG~~~~~ 298 (396)
T cd06460 287 KMKEYLGIRPPN 298 (396)
T ss_pred HHHHHcCCCCCC
Confidence 445667887643
No 61
>COG1461 Predicted kinase related to dihydroxyacetone kinase [General function prediction only]
Probab=36.82 E-value=36 Score=32.04 Aligned_cols=28 Identities=21% Similarity=0.047 Sum_probs=21.7
Q ss_pred ccchHHHHHhc-----CcccccCCCHHHHHHhh
Q 030414 16 FSSFVILQLIM-----ILIFFQTVEEEVYEAHK 43 (177)
Q Consensus 16 ~~~~~~l~~~~-----g~~~Lr~v~~~~l~~~~ 43 (177)
.||++||+++| .+...++++.++|....
T Consensus 81 GNSGVIlSQilrGf~~~~~~~~ei~~~~la~Af 113 (542)
T COG1461 81 GNSGVILSQILRGFAAAIADKEEIDIEDLAKAF 113 (542)
T ss_pred CcchhhHHHHHHHHHHhcccccccCHHHHHHHH
Confidence 68999999999 35667788888886544
No 62
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=36.00 E-value=89 Score=26.22 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=18.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHH
Q 030414 64 VAKGLEAWKSGNSQDFGKLISAS 86 (177)
Q Consensus 64 v~~~~~aL~~~d~~~~G~lm~~s 86 (177)
+..+++|+..||++.+..||.+.
T Consensus 170 ~~~f~~a~~~gD~~~l~~lL~~d 192 (281)
T TIGR02957 170 LERFVEAAQTGDLDGLLELLAED 192 (281)
T ss_pred HHHHHHHHHhCCHHHHHHHHhhc
Confidence 55677888889999988888853
No 63
>PHA01735 hypothetical protein
Probab=32.38 E-value=35 Score=23.52 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=30.2
Q ss_pred CCHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q 030414 34 VEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQ 77 (177)
Q Consensus 34 v~~~~l~~~~~~l~~~~~~R~~hvv~E~~Rv~~~~~aL~~~d~~ 77 (177)
.++++|+..-..+.+++.+|++.--..+.-...+.+-|+.+|+.
T Consensus 5 A~ee~fs~LH~~lt~El~~RiksgeATtaDL~AA~d~Lk~NdIt 48 (76)
T PHA01735 5 ATEEQFDELHQLLTNELLSRIKSGEATTADLRAACDWLKSNDIT 48 (76)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHCCCc
Confidence 46677777776777788788776555555566677777777654
No 64
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=32.26 E-value=3.3e+02 Score=23.47 Aligned_cols=113 Identities=13% Similarity=0.131 Sum_probs=58.9
Q ss_pred CCCHHHHHHhhccCCHHHHHHHHHHHHHHHH-HHHHHHHHhC--CCHHHHHHHHHHHHHhhhhcccCCC---hHHHHHHH
Q 030414 33 TVEEEVYEAHKNELEPTLAKRAEHYFTENRR-VAKGLEAWKS--GNSQDFGKLISASGLSSIYNYECGS---EPLIQLNE 106 (177)
Q Consensus 33 ~v~~~~l~~~~~~l~~~~~~R~~hvv~E~~R-v~~~~~aL~~--~d~~~~G~lm~~sh~slr~~~~vS~---pelD~lv~ 106 (177)
.++.+++......+..........-+...++ ++.++..+.. ...-.++++......-. +..+++. .++-.+..
T Consensus 269 ~I~~~~v~~a~~~~~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~-~~~~~~~~~~~~~~~~l~ 347 (394)
T PRK00411 269 KVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELC-EELGYEPRTHTRFYEYIN 347 (394)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH-HHcCCCcCcHHHHHHHHH
Confidence 4666666655554433333332222233332 3344433322 12346677776655433 3456643 56666666
Q ss_pred HHHhCCCCceeEeecCCCCceEEEEeccccHHHHHHHHHHH
Q 030414 107 ILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSE 147 (177)
Q Consensus 107 ~a~~~~Ga~GaK~tGaG~GG~viaLv~~~~~~~v~~~l~~~ 147 (177)
.... .|....+..|.|..|-.--+.-.-..+.+.+++.+.
T Consensus 348 ~L~~-~glI~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~ 387 (394)
T PRK00411 348 KLDM-LGIINTRYSGKGGRGRTRLISLSYDPEDVLERLLED 387 (394)
T ss_pred HHHh-cCCeEEEEecCCCCCCeEEEEecCCHHHHHHHHHhh
Confidence 6655 798888887777555443332233445777776654
No 65
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional
Probab=32.16 E-value=1e+02 Score=26.19 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=19.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHH
Q 030414 64 VAKGLEAWKSGNSQDFGKLISAS 86 (177)
Q Consensus 64 v~~~~~aL~~~d~~~~G~lm~~s 86 (177)
+..+++|+.+||++.|-.||.+.
T Consensus 180 ~~~f~~a~~~gd~~~l~~ll~~d 202 (290)
T PRK09635 180 TRAFIEACSNGDLDTLLEVLDPG 202 (290)
T ss_pred HHHHHHHHHhCCHHHHHHHhhhh
Confidence 56778999999999999999753
No 66
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=31.71 E-value=27 Score=35.30 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=21.3
Q ss_pred ccCCChHHHHHHHHHHhCCCC-ceeEeec
Q 030414 94 YECGSEPLIQLNEILQRAPGV-FGARFSG 121 (177)
Q Consensus 94 ~~vS~pelD~lv~~a~~~~Ga-~GaK~tG 121 (177)
|+=..|-|.+|.+.+.+ .|. +|.|+|-
T Consensus 277 ~~~~~~~~~~l~~~~~~-~~~~fgvk~~n 304 (1012)
T TIGR03315 277 YEDAVAMLQRLQLLAKE-KGLGFGVKLTN 304 (1012)
T ss_pred hhHHHHHHHHHHHHHHH-cCCeeeEEEec
Confidence 44446888999999998 676 8999985
No 67
>PF03118 RNA_pol_A_CTD: Bacterial RNA polymerase, alpha chain C terminal domain; InterPro: IPR011260 The core of the bacterial RNA polymerase (RNAP) consists of four subunits, two alpha, a beta and a beta', which are conserved from bacteria to mammals. The alpha subunit (RpoA) initiates RNAP assembly by dimerising to form a platform on which the beta subunits can interact. The alpha subunit consists of a N-terminal domain (NTD) and a C-terminal domain (CTD), connected by a short linker. The NTD is essential for RNAP assembly, while the CTD is necessary for transcription regulation, interacting with transcription factors and promoter upstream elements. In Escherichia coli, the catabolite activator protein (CAP or CRP) was shown to exert its effect through its interactions with the CTD, where CAP binding to CTD promotes RNAP binding to promoter DNA, thereby stimulating transcription initiation at class I CAP-dependent promoters. At class II CAP-dependent promoters, the interaction of CAP with CTD is one of multiple interactions involved in activation []. The CTD has a compact structure of four helices and two long arms enclosing its hydrophobic core, making its folding topology distinct from most other binding proteins. The upstream promoter element-binding site is formed from helices 1 and 4 [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3N97_B 1XS9_D 3K4G_A 3N4M_B 1COO_A 1LB2_E 3IYD_A 1Z3E_B 3GFK_B 3IHQ_B ....
Probab=31.13 E-value=47 Score=22.08 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=30.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHH
Q 030414 66 KGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEIL 108 (177)
Q Consensus 66 ~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a 108 (177)
.+..+|+...+..+++|+.-+...|....++...-+++|.+..
T Consensus 22 Ra~n~L~~~~I~tv~dL~~~s~~~L~~i~n~G~ksl~EI~~~L 64 (66)
T PF03118_consen 22 RAYNCLKRAGIHTVGDLVKYSEEDLLKIKNFGKKSLEEIKEKL 64 (66)
T ss_dssp HHHHHHHCTT--BHHHHHCS-HHHHHTSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcCHHHHHhCCHHHHHhCCCCCHhHHHHHHHHH
Confidence 3567788899999999999988888776777766677766543
No 68
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=29.77 E-value=31 Score=34.94 Aligned_cols=27 Identities=26% Similarity=0.512 Sum_probs=21.2
Q ss_pred ccCCChHHHHHHHHHHhCCCC-ceeEeec
Q 030414 94 YECGSEPLIQLNEILQRAPGV-FGARFSG 121 (177)
Q Consensus 94 ~~vS~pelD~lv~~a~~~~Ga-~GaK~tG 121 (177)
|+=..|-|.+|.+.+.+ .|. +|.|+|-
T Consensus 279 ~~~a~~m~~~l~~~~~~-~~~~fgvk~tn 306 (1019)
T PRK09853 279 YTDAVEMLERLMALAKE-KGLGFGVKLTN 306 (1019)
T ss_pred hhHHHHHHHHHHHHHHH-cCceeeEEEec
Confidence 44446888999999997 676 8999885
No 69
>PRK07758 hypothetical protein; Provisional
Probab=28.32 E-value=62 Score=23.52 Aligned_cols=46 Identities=17% Similarity=0.147 Sum_probs=37.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCC
Q 030414 67 GLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPG 113 (177)
Q Consensus 67 ~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~G 113 (177)
+..+|+...+..+++|...+...|...-++..--+++|.+...+ .|
T Consensus 46 A~N~Lk~AGI~TL~dLv~~te~ELl~iknlGkKSL~EIkekL~E-~G 91 (95)
T PRK07758 46 ARRALEHHGIHTVEELSKYSEKEILKLHGMGPASLPKLRKALEE-SG 91 (95)
T ss_pred HHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH-cC
Confidence 56677888899999999999888887777887778888777765 45
No 70
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=28.07 E-value=1.5e+02 Score=21.60 Aligned_cols=37 Identities=14% Similarity=0.250 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHH
Q 030414 48 PTLAKRAEHYFTENRRVAKGLEAWKSG--NSQDFGKLIS 84 (177)
Q Consensus 48 ~~~~~R~~hvv~E~~Rv~~~~~aL~~~--d~~~~G~lm~ 84 (177)
+..|+.+++++.-|+|..++..-|++. ++...|+-+.
T Consensus 53 e~~Y~Qs~~Yv~~NerLqqa~~~Lkkk~e~L~~age~Le 91 (97)
T PF15136_consen 53 EQQYQQSRTYVAMNERLQQARDQLKKKCEELRQAGEELE 91 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446899999999999999998777653 4555555554
No 71
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=28.05 E-value=1.9e+02 Score=19.49 Aligned_cols=35 Identities=20% Similarity=0.398 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 030414 50 LAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG 87 (177)
Q Consensus 50 ~~~R~~hvv~E~~Rv~~~~~aL~~~d~~~~G~lm~~sh 87 (177)
..++++-.+.|..|+.... ++.||+++.+......
T Consensus 7 ~~e~~~~~lke~~rvl~~a---rKP~~eEy~~~aKi~~ 41 (65)
T COG2443 7 KPEELREFLKEYRRVLKVA---RKPDWEEYSKIAKITG 41 (65)
T ss_pred HHHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHH
Confidence 3467777888999988766 8899999887766543
No 72
>KOG3304 consensus Surfeit family protein 5 [General function prediction only]
Probab=27.02 E-value=57 Score=25.24 Aligned_cols=10 Identities=20% Similarity=0.238 Sum_probs=5.5
Q ss_pred eecCCCCceE
Q 030414 119 FSGAGFRGCC 128 (177)
Q Consensus 119 ~tGaG~GG~v 128 (177)
|.|+|+||+=
T Consensus 1 M~~g~GG~s~ 10 (148)
T KOG3304|consen 1 MAQGGGGGSR 10 (148)
T ss_pred CCCCCCCCCc
Confidence 3455556664
No 73
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=26.76 E-value=65 Score=28.60 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=17.7
Q ss_pred eEeecCCCCceEE--EEeccccHHHHHHHH
Q 030414 117 ARFSGAGFRGCCL--ALVDADRAEEAASYV 144 (177)
Q Consensus 117 aK~tGaG~GG~vi--aLv~~~~~~~v~~~l 144 (177)
.-++|||.||.+| ++|++..+..--..+
T Consensus 38 ~e~~~gG~gg~vi~AVmVDpgav~qq~~r~ 67 (387)
T COG3064 38 IEASGGGGGGSVIDAVMVDPGAVVQQYGRI 67 (387)
T ss_pred ccccCCCCCcceeeeeEeCcHHHHHHHHHH
Confidence 3567888889988 566766544433333
No 74
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=25.57 E-value=1.6e+02 Score=24.61 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=18.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHH
Q 030414 64 VAKGLEAWKSGNSQDFGKLISAS 86 (177)
Q Consensus 64 v~~~~~aL~~~d~~~~G~lm~~s 86 (177)
+..+.+|+.+||++.+..||.+.
T Consensus 177 v~~f~~A~~~gD~~~l~~Lla~D 199 (293)
T PRK09636 177 VEAFFAALASGDLDALVALLAPD 199 (293)
T ss_pred HHHHHHHHHhCCHHHHHHHHhhC
Confidence 55678889999999999998863
No 75
>PF00543 P-II: Nitrogen regulatory protein P-II members of this family.; InterPro: IPR002187 In Gram-negative bacteria, the activity and concentration of glutamine synthetase (GS) is regulated in response to nitrogen source availability. PII, a tetrameric protein encoded by the glnB gene, is a component of the adenylation cascade involved in the regulation of GS activity []. In nitrogen-limiting conditions, when the ratio of glutamine to 2-ketoglutarate decreases, P-II is uridylylated on a tyrosine residue to form P-II-UMP. P-II-UMP allows the deadenylation of GS, thus activating the enzyme. Conversely, in nitrogen excess, P-II-UMP is deuridylated and then promotes the adenylation of GS. P-II also indirectly controls the transcription of the GS gene (glnA) by preventing NR-II (ntrB) to phosphorylate NR-I (ntrC) which is the transcriptional activator of glnA. Once P-II is uridylylated, these events are reversed. P-II is a protein of about 110 amino acid residues extremely well conserved. The tyrosine which is uridylated is located in the central part of the protein. In cyanobacteria, P-II seems to be phosphorylated on a serine residue rather than being uridylated. In methanogenic archaebacteria, the nitrogenase iron protein gene (nifH) is followed by two open reading frames highly similar to the eubacterial P-II protein []. These proteins could be involved in the regulation of nitrogen fixation. In the red alga, Porphyra purpurea, there is a glnB homologue encoded in the chloroplast genome. Other proteins highly similar to glnB are: Bacillus subtilis protein nrgB []. Escherichia coli hypothetical protein ybaI []. ; GO: 0030234 enzyme regulator activity, 0006808 regulation of nitrogen utilization; PDB: 1V3S_B 1V3R_C 2XZW_A 2XUL_A 2V5H_J 2XG8_C 2JJ4_F 1QY7_C 4AFF_A 2XBP_A ....
Probab=25.18 E-value=2.5e+02 Score=19.74 Aligned_cols=67 Identities=22% Similarity=0.284 Sum_probs=43.5
Q ss_pred ChHHHHHHHHHHhCCCCceeE---eecCCCCc--------e-----------EEEEeccccHHHHHHHHHHHhHhhchhh
Q 030414 98 SEPLIQLNEILQRAPGVFGAR---FSGAGFRG--------C-----------CLALVDADRAEEAASYVRSEYFELQPEL 155 (177)
Q Consensus 98 ~pelD~lv~~a~~~~Ga~GaK---~tGaG~GG--------~-----------viaLv~~~~~~~v~~~l~~~y~~~~~~~ 155 (177)
...++.+.+++++ .|+.|.- ..|-|-.. . +..+|+++.++++++++.+.-..-.|
T Consensus 7 ~~~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~k~~i~ivv~d~~v~~iv~~I~~~~~tg~~-- 83 (102)
T PF00543_consen 7 PEKLEEVIEALRE-AGVPGMTVSEVRGRGRQKGQAEIYRGDEYFVEFSPKVKIEIVVPDEDVEEIVEAISEAARTGEP-- 83 (102)
T ss_dssp GGGHHHHHHHHHH-TTGSCEEEEEEEEESSTTTEEEEETTEEECCCEEEEEEEEEEEEGGGHHHHHHHHHHHH-SSST--
T ss_pred hhHHHHHHHHHHH-CCCCeEEEEEeEEecccccccceeeeeeeeecccccEEEEEEECHHhHHHHHHHHHHhccCCCC--
Confidence 4567888888887 7876653 33444322 2 56788889999999999887554222
Q ss_pred hhhcCCCceEEEeecCC
Q 030414 156 ASQLNADSAVLICKPGD 172 (177)
Q Consensus 156 ~~~~g~~~~~~~~~~~~ 172 (177)
| +-.+|++...+
T Consensus 84 ----G-dGkIfV~~V~~ 95 (102)
T PF00543_consen 84 ----G-DGKIFVSPVED 95 (102)
T ss_dssp ----T-SEEEEEEEESE
T ss_pred ----C-CEEEEEEEhhe
Confidence 1 35677765443
No 76
>PRK05377 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=24.68 E-value=1.1e+02 Score=26.69 Aligned_cols=46 Identities=13% Similarity=0.142 Sum_probs=35.5
Q ss_pred CChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccccHHHHHHHHHHHhHh
Q 030414 97 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFE 150 (177)
Q Consensus 97 S~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~~~~~v~~~l~~~y~~ 150 (177)
.+|.||.+.+.+.+ .|++|+|+ -|||-...+....+++..+. +|.+
T Consensus 120 ~~~GLD~Ll~R~~~-y~~~GaKw------RsViki~~~~~I~~na~qla-ryA~ 165 (296)
T PRK05377 120 PIPNLDDLLDRAVE-KGIFGTKM------RSVIKEANEQGIAAVVAQQF-EVAK 165 (296)
T ss_pred cCCCHHHHHHHHHH-hCCCccce------eeeecCCCHHHHHHHHHHHH-HHHH
Confidence 47999999999997 89999998 67888866556666666664 4554
No 77
>PF11126 Phage_DsbA: Transcriptional regulator DsbA; InterPro: IPR020313 DsbA is a double stranded binding protein found in bacteriophage T4 which is involved in transcriptional regulation. DsbA, along with other viral proteins, interacts with the host RNA polymerase core enzyme enabling initiation of transcription. DsbA acts as an enhancer protein of late genes in vitro. The protein consists of mainly alpha helices [].
Probab=24.54 E-value=99 Score=21.16 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHH
Q 030414 75 NSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQ 109 (177)
Q Consensus 75 d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~ 109 (177)
+...|.++++-.|..-|+.++--+.++.++++..-
T Consensus 33 ~gk~Fnkl~~lyHk~~Re~fE~e~ee~~elYD~~F 67 (69)
T PF11126_consen 33 DGKMFNKLLKLYHKQEREEFEAENEEVVELYDAVF 67 (69)
T ss_pred CHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHc
Confidence 78899999999999999989999999999888653
No 78
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=24.14 E-value=2.8e+02 Score=20.20 Aligned_cols=46 Identities=13% Similarity=0.128 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHH
Q 030414 57 YFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLN 105 (177)
Q Consensus 57 vv~E~~Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv 105 (177)
+..|..+.++-.+.+....-+.||++-..+. |- .++++..+|+...
T Consensus 8 I~~eI~kLqe~lk~~e~keAERigRiAlKAG--Lg-eieI~d~eL~~aF 53 (98)
T PRK13848 8 IREEIAKLQEQLKQAETREAERIGRIALKAG--LG-EIEIEEAELQAAF 53 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--cc-ccccCHHHHHHHH
Confidence 3445555555555556666777788877765 44 4688888887443
No 79
>PF11815 DUF3336: Domain of unknown function (DUF3336); InterPro: IPR021771 This family of proteins is characterised by an N-terminal domain that is found adjacent to the patatin/phospholipase A2-related domain (see PF01734 from PFAM). The family of proteins, which contain these two domains, have been characterised in Saccharomyces cerevisiae (Baker's yeast) as a bifunctional enzyme with triacylglycerol lipase and lysophosphatidic acid acyltransferase or lysophosphatidylethanolamine acyltransferase activity. They are generally involved in triacylglycerol mobilisation and localized to lipid particles [, ].
Probab=23.36 E-value=1.9e+02 Score=22.10 Aligned_cols=38 Identities=21% Similarity=0.116 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccCCChHH
Q 030414 62 RRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPL 101 (177)
Q Consensus 62 ~Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pel 101 (177)
.|+.....+..++|+..+-.++..+- .|+.-++++|.|
T Consensus 61 ~rl~~L~~aR~~~d~~~l~~~Lr~~l--~RNlggi~n~~L 98 (145)
T PF11815_consen 61 ERLRELREARQSGDIEALMFLLRTGL--HRNLGGIGNPRL 98 (145)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH--hcCccccCCHHH
Confidence 34455666778899999999888643 456678888764
No 80
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=22.48 E-value=1e+02 Score=27.99 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=25.1
Q ss_pred ccHHHHHHHHHHHhHhhchhhhhhcCCCceEEE-eecCCce
Q 030414 135 DRAEEAASYVRSEYFELQPELASQLNADSAVLI-CKPGDCA 174 (177)
Q Consensus 135 ~~~~~v~~~l~~~y~~~~~~~~~~~g~~~~~~~-~~~~~Ga 174 (177)
+.++.+...+++.|.+ +|++.+.|+ ++++.|+
T Consensus 236 ~~Vd~~L~kir~KY~e--------YgI~e~PfViVKADaGT 268 (403)
T TIGR02049 236 TAVDQVLSKTQKKYEE--------YGIHTQPYVIVKADAGT 268 (403)
T ss_pred HHHHHHHHHHHHHHHH--------cCCCCCCeEEEEcCCCC
Confidence 5688888899988887 488888776 5677774
No 81
>PHA02599 dsbA double-stranded DNA binding protein; Provisional
Probab=21.91 E-value=3.1e+02 Score=19.69 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHH
Q 030414 75 NSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQ 109 (177)
Q Consensus 75 d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~ 109 (177)
|-..|++|+.--|..-|+.++--++|+.++++..-
T Consensus 55 dGK~Fnkl~klYHkq~R~~fEae~~Ev~elYD~if 89 (91)
T PHA02599 55 DGKMFNKLFKLYHKQEREQFEAENDEVVELYDTIF 89 (91)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67889999999999999989999999999988753
No 82
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=21.31 E-value=2.7e+02 Score=18.71 Aligned_cols=51 Identities=14% Similarity=0.099 Sum_probs=31.0
Q ss_pred hhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccc-cHHHHHHH
Q 030414 90 SIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAASY 143 (177)
Q Consensus 90 lr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~-~~~~v~~~ 143 (177)
+.+.+++|.+.+..+++...+ .|.+-++ .|. .||..++--+.+ ..-+++++
T Consensus 31 iA~~~~i~~~~l~kil~~L~~-~Gli~s~-~G~-~GGy~L~~~~~~Itl~dI~~a 82 (83)
T PF02082_consen 31 IAERLGISPSYLRKILQKLKK-AGLIESS-RGR-GGGYRLARPPEEITLLDIVRA 82 (83)
T ss_dssp HHHHHTS-HHHHHHHHHHHHH-TTSEEEE-TST-TSEEEESS-CCGSBHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHhh-CCeeEec-CCC-CCceeecCCHHHCCHHHHHHh
Confidence 445678999999999999887 7875332 233 356665554333 25555554
No 83
>COG1916 Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown]
Probab=20.70 E-value=1.8e+02 Score=26.24 Aligned_cols=63 Identities=13% Similarity=0.009 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHhhhhcccCC-ChHHHHHHHHHHhCCCC
Q 030414 51 AKRAEHYFTENRRVAKGLEAWKSGNSQ--DFGKLISASGLSSIYNYECG-SEPLIQLNEILQRAPGV 114 (177)
Q Consensus 51 ~~R~~hvv~E~~Rv~~~~~aL~~~d~~--~~G~lm~~sh~slr~~~~vS-~pelD~lv~~a~~~~Ga 114 (177)
..|.+-...+..-=....++|+.|+.- ..+-++...|.-+-+..|+- ..|+-.-++.|++ .|+
T Consensus 48 ~~R~~sLl~~~~~~ldl~~vlk~Gk~~~~l~~~lLa~~Qrklg~~~Gv~PGsEmk~AIe~A~e-~ga 113 (388)
T COG1916 48 EARLLSLLGGSREELDLAQVLKEGKAFFLLAGLLLAYFQRKLGKELGVKPGSEMKAAIEAARE-LGA 113 (388)
T ss_pred HHHHHHHhcCCcccCCHHHHHHcCchHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-cCC
Confidence 356666666655445678899999977 67778888888777888886 5788888888887 454
No 84
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=20.11 E-value=5.4e+02 Score=21.79 Aligned_cols=49 Identities=14% Similarity=0.047 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhhhccc---CCChHHHHHHHHHHhCCCCceeEeecCCCCce
Q 030414 77 QDFGKLISASGLSSIYNYE---CGSEPLIQLNEILQRAPGVFGARFSGAGFRGC 127 (177)
Q Consensus 77 ~~~G~lm~~sh~slr~~~~---vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~ 127 (177)
-.++++..+-.. +.+.++ ++..+.-..++.... .|....+..|.|..|-
T Consensus 308 ~~~~~~~~~y~~-~~~~~~~~~~~~~~~~~~l~~l~~-~gli~~~~~~~g~~g~ 359 (365)
T TIGR02928 308 FRTGEVYEVYKE-VCEDIGVDPLTQRRISDLLNELDM-LGLVEAEERNKGRGGR 359 (365)
T ss_pred ccHHHHHHHHHH-HHHhcCCCCCcHHHHHHHHHHHHh-cCCeEEEEEcCCCCCc
Confidence 355665554332 223334 344555555655554 7998888888887664
Done!