Query 030414
Match_columns 177
No_of_seqs 172 out of 1305
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 21:45:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030414.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030414hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2u_C Protein GAL3; rossmann 100.0 3.2E-33 1.1E-37 253.6 15.0 127 49-177 381-518 (520)
2 2a2c_A N-acetylgalactosamine k 100.0 2E-28 6.8E-33 219.4 13.4 125 49-177 347-475 (478)
3 1pie_A Galactokinase; galactos 99.9 7.3E-27 2.5E-31 205.2 19.5 145 26-177 271-416 (419)
4 1wuu_A Galactokinase; galactos 99.9 1.7E-26 5.7E-31 201.6 16.9 157 10-177 224-397 (399)
5 2cz9_A Probable galactokinase; 99.9 5.5E-26 1.9E-30 193.4 17.2 156 9-176 178-350 (350)
6 1kvk_A MK, mevalonate kinase; 99.8 3.3E-21 1.1E-25 167.7 8.6 147 9-176 228-379 (395)
7 3gon_A Phosphomevalonate kinas 99.8 2E-20 6.9E-25 157.3 10.9 104 35-146 213-318 (335)
8 3k85_A D-glycero-D-manno-hepto 99.8 2.5E-20 8.4E-25 161.2 5.8 94 51-147 228-322 (357)
9 4hac_A Mevalonate kinase; GHMP 99.7 2.5E-17 8.7E-22 140.2 9.3 97 64-176 223-320 (321)
10 2x7i_A Mevalonate kinase; tran 99.7 6.8E-17 2.3E-21 135.4 11.4 124 10-148 173-297 (308)
11 3k17_A LIN0012 protein; protei 99.7 5.8E-17 2E-21 140.6 10.4 92 53-147 243-342 (365)
12 2hfs_A Mevalonate kinase, puta 99.7 9.7E-17 3.3E-21 135.7 11.1 103 63-176 229-332 (332)
13 2pg9_A Phosphomevalonate kinas 99.7 4.2E-16 1.4E-20 133.6 10.9 84 61-146 235-320 (337)
14 2oi2_A Mevalonate kinase; enzy 99.6 3.8E-15 1.3E-19 123.3 13.1 84 64-149 200-284 (292)
15 1kkh_A Mevalonate kinase; mixe 99.5 2.9E-13 1E-17 113.6 13.5 77 67-146 229-305 (317)
16 1h72_C HK, homoserine kinase; 99.4 3.8E-13 1.3E-17 111.7 9.2 103 54-177 192-296 (296)
17 2gs8_A Mevalonate pyrophosphat 99.3 4E-11 1.4E-15 101.0 11.6 98 61-176 210-317 (317)
18 3qt5_A Mevalonate diphosphate 99.2 9E-11 3.1E-15 100.5 11.7 100 63-177 221-331 (332)
19 3hul_A HSK, HK, homoserine kin 99.2 1.8E-10 6E-15 97.2 11.1 101 58-176 185-288 (298)
20 3pyf_A 4-diphosphocytidyl-2-C- 98.8 2.5E-09 8.7E-14 90.4 5.7 97 63-177 202-300 (306)
21 1fi4_A Mevalonate 5-diphosphat 98.5 1E-06 3.6E-11 77.4 11.3 87 61-149 251-348 (416)
22 2hke_A Diphosphomevalonate dec 98.4 3.4E-06 1.2E-10 73.1 12.9 88 61-150 222-320 (380)
23 3f0n_A Mevalonate pyrophosphat 98.3 7.9E-06 2.7E-10 72.2 12.8 94 55-150 240-346 (414)
24 3lto_A Mevalonate diphosphate 98.2 1E-05 3.5E-10 69.2 10.7 89 60-150 212-310 (323)
25 1uek_A 4-(cytidine 5'-diphosph 98.1 5E-06 1.7E-10 68.3 7.0 59 97-173 209-268 (275)
26 2v8p_A 4-diphosphocytidyl-2-C- 97.7 4.2E-06 1.4E-10 68.8 -1.1 66 69-142 193-260 (271)
27 2ww4_A 4-diphosphocytidyl-2C-m 96.6 0.0012 4.1E-08 54.6 3.3 43 97-144 218-261 (283)
28 2eg2_A Nitrogen regulatory pro 72.0 17 0.00058 25.3 7.2 68 97-172 9-98 (112)
29 1vfj_A Nitrogen regulatory pro 69.1 15 0.00053 25.7 6.5 67 97-171 9-97 (116)
30 2j9c_A GLNK1, hypothetical nit 66.9 13 0.00045 26.3 5.7 66 97-170 11-98 (119)
31 3bzq_A Nitrogen regulatory pro 62.7 26 0.00089 24.4 6.6 68 97-172 11-100 (114)
32 3m05_A Uncharacterized protein 62.0 12 0.00041 26.9 4.7 53 98-151 15-72 (114)
33 2gw8_A PII signal transduction 61.5 30 0.001 24.1 6.7 68 97-172 11-100 (114)
34 2o66_A PII protein; regulation 61.2 34 0.0012 25.0 7.2 67 97-171 21-110 (135)
35 1hwu_A PII protein; herbaspiri 60.8 38 0.0013 23.4 7.3 66 97-170 9-96 (112)
36 2cz4_A Hypothetical protein TT 58.5 35 0.0012 24.3 6.7 53 97-150 33-99 (119)
37 2ns1_B Nitrogen regulatory pro 57.4 46 0.0016 23.2 8.2 68 97-172 13-102 (116)
38 3t9z_A GLNK3, nitrogen regulat 48.0 54 0.0018 23.3 6.2 68 97-172 9-98 (118)
39 3ncq_A Nitrogen regulatory pro 44.7 55 0.0019 23.2 5.9 68 97-172 9-98 (119)
40 3k4g_A DNA-directed RNA polyme 41.0 15 0.0005 25.2 2.1 55 66-121 22-77 (86)
41 1o51_A Hypothetical protein TM 37.3 58 0.002 23.0 5.0 50 98-148 29-98 (114)
42 2i9o_A MHB8A peptide; beta-hai 35.2 11 0.00036 21.3 0.5 12 136-147 22-33 (37)
43 4aff_A Nitrogen regulatory pro 29.4 1.5E+02 0.005 20.8 8.1 69 97-173 9-99 (116)
44 3dfe_A Putative PII-like signa 26.9 80 0.0027 22.1 4.2 63 98-170 15-97 (111)
45 4e17_B Catenin alpha-1; four h 23.8 99 0.0034 18.1 3.4 19 53-71 13-31 (40)
46 2b0l_A GTP-sensing transcripti 23.7 1.5E+02 0.005 20.1 5.0 46 90-138 49-94 (102)
47 2qar_B Telsam domain; polymer, 21.4 1.4E+02 0.0047 20.3 4.4 40 29-68 46-85 (93)
48 1z3e_B DNA-directed RNA polyme 20.6 36 0.0012 22.3 1.1 47 67-114 20-66 (73)
49 2gff_A LSRG protein; dimeric a 20.3 1.9E+02 0.0065 18.9 6.0 72 103-174 24-97 (106)
No 1
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=100.00 E-value=3.2e-33 Score=253.57 Aligned_cols=127 Identities=30% Similarity=0.527 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeEeec
Q 030414 49 TLAKRAEHYFTENRRVAKGLEAWKSG-------NSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSG 121 (177)
Q Consensus 49 ~~~~R~~hvv~E~~Rv~~~~~aL~~~-------d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tG 121 (177)
.+++|++|+++|+.||.+++++|+++ |++.||+||++||.+||++|+||||++|.|++.|++ .|++|+||||
T Consensus 381 ~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~~sH~slr~~~~vS~peld~lv~~a~~-~Ga~GarlTG 459 (520)
T 3v2u_C 381 KLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALA-NGSFGSRLTG 459 (520)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHH-TTCSEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh-CCCCEEEEec
Confidence 47899999999999999999999997 599999999999999999999999999999999998 8999999999
Q ss_pred CCCCceEEEEe---ccccHHHHHHHHHHHhHhh-chhhhhhcCCCceEEEeecCCceeeC
Q 030414 122 AGFRGCCLALV---DADRAEEAASYVRSEYFEL-QPELASQLNADSAVLICKPGDCARVI 177 (177)
Q Consensus 122 aG~GG~viaLv---~~~~~~~v~~~l~~~y~~~-~~~~~~~~g~~~~~~~~~~~~Ga~~~ 177 (177)
||||||+|+|+ +++.+++++++|.+.|+++ +|.+.+. ++++.+|+|+|+.||+++
T Consensus 460 aG~GGc~iaLv~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~-~~~~~~~~~~p~~GA~i~ 518 (520)
T 3v2u_C 460 AGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRYPDLTDE-ELKDAIIVSKPALGTCLY 518 (520)
T ss_dssp SCSSSEEEEEEEESTTCSHHHHHHHHHHHTHHHHCTTCCHH-HHHHHEEECCCCCCSEEE
T ss_pred CCCCceEEEEEcCCCHHHHHHHHHHHHHHHHhccCCccccc-cCCCeEEEecCCCceEEe
Confidence 99999999999 8899999999999998865 3433222 457899999999999873
No 2
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=99.95 E-value=2e-28 Score=219.36 Aligned_cols=125 Identities=30% Similarity=0.491 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCC
Q 030414 49 TLAKRAEHYFTENRRVAKGLEAWKS---GNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFR 125 (177)
Q Consensus 49 ~~~~R~~hvv~E~~Rv~~~~~aL~~---~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~G 125 (177)
.+++|++|++.|+.|+.+++++|++ +|++.||++|++||.++|++|++|+|++|+|++.+++ .|++|+||||||||
T Consensus 347 ~~~~ra~h~~~e~~rv~~~~~aL~~~~~~d~~~lg~lm~~sh~slr~l~~vs~peld~l~~~a~~-~Ga~GarltGAG~G 425 (478)
T 2a2c_A 347 KLYQRAKHVYSEAARVLQFKKICEEAPENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRK-FGAQGSRLTGAGWG 425 (478)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHH-TTCSEEEECTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHh-CCCcEEEeccCCCc
Confidence 4678999999999999999999998 9999999999999999999999999999999999998 79999999999999
Q ss_pred ceEEEEeccccHHHHHHHHHHHhHhhchhhhhhcCC-CceEEEeecCCceeeC
Q 030414 126 GCCLALVDADRAEEAASYVRSEYFELQPELASQLNA-DSAVLICKPGDCARVI 177 (177)
Q Consensus 126 G~viaLv~~~~~~~v~~~l~~~y~~~~~~~~~~~g~-~~~~~~~~~~~Ga~~~ 177 (177)
||+++|++++.+++++++|.+.|++.++.. +++ .+.+|+++|++||+++
T Consensus 426 G~viaLv~~~~~~~~~~~l~~~y~~~~~~~---~~~~~~~~~~~~p~~Ga~~~ 475 (478)
T 2a2c_A 426 GCTVSMVPADKLPSFLANVHKAYYQRSDGS---LAPEKQSLFATKPGGGALVL 475 (478)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHHC------------CCSEEEECCBCCCEEE
T ss_pred cEEEEEEcHHHHHHHHHHHHHHHHHhcCcc---ccCCCCcEEEEcCCCCeEee
Confidence 999999999999999999999999864310 122 4689999999999874
No 3
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=99.95 E-value=7.3e-27 Score=205.21 Aligned_cols=145 Identities=31% Similarity=0.461 Sum_probs=133.8
Q ss_pred cCcccccCCCHHHHHHhhccCC-HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccCCChHHHHH
Q 030414 26 MILIFFQTVEEEVYEAHKNELE-PTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQL 104 (177)
Q Consensus 26 ~g~~~Lr~v~~~~l~~~~~~l~-~~~~~R~~hvv~E~~Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pelD~l 104 (177)
.+++.|++++++++..+.+.++ +..++|+.|++.|+.|+.++.++|+++|++.||++|+++|.++++.|++++|++|++
T Consensus 271 ~~v~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~v~e~~r~~~~~~al~~~d~~~lg~lm~~~~~~l~~~~~~~~p~l~~l 350 (419)
T 1pie_A 271 LDIQSLGELSNEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHASLKDDYEVTGLELDTL 350 (419)
T ss_dssp CCCSSGGGCCHHHHHHTGGGTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSCCCCHHHHHH
T ss_pred cccCchhhCCHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3588999999999998888884 567889999999999999999999999999999999999999998899999999999
Q ss_pred HHHHHhCCCCceeEeecCCCCceEEEEeccccHHHHHHHHHHHhHhhchhhhhhcCCCceEEEeecCCceeeC
Q 030414 105 NEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 177 (177)
Q Consensus 105 v~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~~~~~v~~~l~~~y~~~~~~~~~~~g~~~~~~~~~~~~Ga~~~ 177 (177)
++.+++.+|++|+||||||||||+++|++++.+++++++|.+.|.+. +|+++.+|+++|+.|++++
T Consensus 351 ~~~a~~~~Ga~ga~lsGaG~Gg~v~al~~~~~a~~~~~~l~~~~~~~-------~g~~~~~~~~~~~~Ga~v~ 416 (419)
T 1pie_A 351 AETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYEEV-------VGYPASFYVAQIGSGSTKL 416 (419)
T ss_dssp HHHHHHSTTEEEEEECSSCSSSEEEEEEEGGGHHHHHHHHHHHHHHH-------HSSCCEEEECCBCCCSBCC
T ss_pred HHHHHhcCCCceeeEecCCCCeEEEEEEchhhHHHHHHHHHHHHHHh-------cCCCCeEEEEcCCCCeeec
Confidence 99999833999999999999999999999999999999999999875 4888999999999999875
No 4
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=99.94 E-value=1.7e-26 Score=201.62 Aligned_cols=157 Identities=28% Similarity=0.421 Sum_probs=140.9
Q ss_pred ceeeeeccchHHH-----------------HHhcCcccccCCCHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030414 10 YFHLILFSSFVIL-----------------QLIMILIFFQTVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWK 72 (177)
Q Consensus 10 ~~~~~~~~~~~~l-----------------~~~~g~~~Lr~v~~~~l~~~~~~l~~~~~~R~~hvv~E~~Rv~~~~~aL~ 72 (177)
.+++++.+++..+ ++.++++.+|+++++++..+...+++..++|+.|++.|+.|+.++.++|+
T Consensus 224 ~~~~vl~~~~~~~~t~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~l~~~~~~r~~~~~~e~~r~~~~~~al~ 303 (399)
T 1wuu_A 224 KLAVLITNSNVRHSLASSEYPVRRRQCEEVARALGKESLREVQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAALR 303 (399)
T ss_dssp SEEEEEEEEEEEC--CTTTHHHHHHHHHHHHHHTTCSSTTSCCHHHHTTGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEECCCccccccccHHHHHHHHHHHHHHhChhhhhcCCHHHHHHHHhhcCHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5677777665433 34668888999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccccHHHHHHHHHHHhHhhc
Q 030414 73 SGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQ 152 (177)
Q Consensus 73 ~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~~~~~v~~~l~~~y~~~~ 152 (177)
++|++.||++|+++|.++++.+++++|++|++++.+++..|++|+||||||||||+++|++++.++++.++|.+.|
T Consensus 304 ~~d~~~lg~~m~~~h~~l~~~~~~~~p~l~~l~~~a~~~~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~l~~~~---- 379 (399)
T 1wuu_A 304 RGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHY---- 379 (399)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHTSTTEEEEEECSSCSEEEEEEEEEGGGHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCceEEeeecCCCccEEEEEEccchHHHHHHHHHHHh----
Confidence 9999999999999999999889999999999999998635999999999999999999999988999999998766
Q ss_pred hhhhhhcCCCceEEEeecCCceeeC
Q 030414 153 PELASQLNADSAVLICKPGDCARVI 177 (177)
Q Consensus 153 ~~~~~~~g~~~~~~~~~~~~Ga~~~ 177 (177)
|..+.+|+++|++|++++
T Consensus 380 -------~~~~~~~~~~~~~Ga~~~ 397 (399)
T 1wuu_A 380 -------GGTATFYLSQAADGAKVL 397 (399)
T ss_dssp -------SSCCEEEEECCCCCSEEC
T ss_pred -------CCCCcEEEEcCCCCeeec
Confidence 456899999999999875
No 5
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=99.94 E-value=5.5e-26 Score=193.45 Aligned_cols=156 Identities=28% Similarity=0.375 Sum_probs=136.4
Q ss_pred cceeeeeccchHH--HH---------------HhcCcccccCCCHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 030414 9 EYFHLILFSSFVI--LQ---------------LIMILIFFQTVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAW 71 (177)
Q Consensus 9 ~~~~~~~~~~~~~--l~---------------~~~g~~~Lr~v~~~~l~~~~~~l~~~~~~R~~hvv~E~~Rv~~~~~aL 71 (177)
+.+++++.+++.. +. +.+++++||+++++++ ..+++..++|..|++.|+.|+.++.++|
T Consensus 178 ~~~~~vl~~~~~~~~~~t~~~~~r~~~~~~a~~~~~~~~lr~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~al 253 (350)
T 2cz9_A 178 KDVSILVFYTGVRRELASSEYAERKHIAEESLKILGKGSSKEVREGEL----SKLPPLHRKFFGYIVRENARVLEVRDAL 253 (350)
T ss_dssp TTEEEEEEECSCC----CHHHHHHHHHHHHHHHHHTCSCGGGCCGGGG----GGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCccccchHHHHHHHHHHHHHHhChhhhhhCCHHHH----hhCCHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3567777766543 22 2356788899888776 4578878889999999999999999999
Q ss_pred hCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccccHHHHHHHHHHHhHhh
Q 030414 72 KSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFEL 151 (177)
Q Consensus 72 ~~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~~~~~v~~~l~~~y~~~ 151 (177)
.++|++.||++|+++|.+|++.+++++|++|++++.+++ .|++|+||||+|||||+++|++++..+++.++|.+.|.+.
T Consensus 254 ~~~d~~~lg~~~~~~~~~l~~~~~~~~p~l~~l~~~~~~-~Ga~ga~lsGaG~G~~v~~l~~~~~~~~~~~~l~~~~~~~ 332 (350)
T 2cz9_A 254 KEGNVEEVGKILTTAHWDLAKNYEVSCKELDFFVERALK-LGAYGARLTGAGFGGSAIALVDKEDAETIGEEILREYLKR 332 (350)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-TTCSEEEECSSCSSSEEEEEEEGGGHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-cCCCEEEEecCCCceEEEEEEchhhHHHHHHHHHHHHHHh
Confidence 999999999999999999998899999999999999998 7999999999999999999999988999999999999875
Q ss_pred chhhhhhcCCCceEEEeecCCceee
Q 030414 152 QPELASQLNADSAVLICKPGDCARV 176 (177)
Q Consensus 152 ~~~~~~~~g~~~~~~~~~~~~Ga~~ 176 (177)
||+.+.+|+++|++|+++
T Consensus 333 -------~~~~~~~~~~~~~~Ga~~ 350 (350)
T 2cz9_A 333 -------FPWKARHFIVEPSDGVGI 350 (350)
T ss_dssp -------CCSCCEEEEECEECCSBC
T ss_pred -------hCCCCcEEEecCCCCCCC
Confidence 488999999999999975
No 6
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=99.84 E-value=3.3e-21 Score=167.67 Aligned_cols=147 Identities=13% Similarity=0.095 Sum_probs=116.3
Q ss_pred cceeeeeccchHHHHHhcCcccccCCCHHHHHHhhccCC---HHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHH
Q 030414 9 EYFHLILFSSFVILQLIMILIFFQTVEEEVYEAHKNELE---PTLAKRAEHYFTENRRVAKG-LEAWKSGNSQDFGKLIS 84 (177)
Q Consensus 9 ~~~~~~~~~~~~~l~~~~g~~~Lr~v~~~~l~~~~~~l~---~~~~~R~~hvv~E~~Rv~~~-~~aL~~~d~~~~G~lm~ 84 (177)
+.+++++.+++...++.--++.+|+.. ...+ +..++|+.|++.|+.|+... ..+|.++|++.||++|+
T Consensus 228 ~~~~~vl~~~~~~~~T~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~al~~~d~~~lg~lm~ 299 (395)
T 1kvk_A 228 PALQILLTNTKVPRSTKALVAGVRSRL--------IKFPEIMAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMD 299 (395)
T ss_dssp CCEEEEEEECCCCCCHHHHHHHHHHHH--------HHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCchHHHHHHHHHHH--------HHCHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHH
Confidence 456778877765544432222222211 1111 23568999999999998877 68889999999999999
Q ss_pred HHHHhhhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccccHHHHHHHHHHHhHhhchhhhhhcCCCce
Q 030414 85 ASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSA 164 (177)
Q Consensus 85 ~sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~~~~~v~~~l~~~y~~~~~~~~~~~g~~~~ 164 (177)
++|.++++ |++++|++|++++.+++ .|+ |+||||||||||+++|++++..+++++++.+.|.+. | ..
T Consensus 300 ~~~~~l~~-~~~~~p~l~~l~~~a~~-~Ga-ga~~sGaG~Gg~v~~l~~~~~~~~~~~~~~~~~~~~--------g--~~ 366 (395)
T 1kvk_A 300 MNQHHLNA-LGVGHASLDQLCQVTAA-HGL-HSKLTGAGGGGCGITLLKPGLERAKVEAAKQALTGC--------G--FD 366 (395)
T ss_dssp HHHHHHHH-HTCCCHHHHHHHHHHHH-TTC-EEEECSSCSSSEEEEEECTTCCHHHHHHHHHHHHHT--------T--CE
T ss_pred HHHHHHHH-cCCCCHHHHHHHHHHHH-cCC-ceeeccCCCCCEEEEEecCCCCHHHHHHHHHHHHHc--------C--CE
Confidence 99999997 99999999999999998 799 999999999999999999888888999998888763 4 34
Q ss_pred EEEee-cCCceee
Q 030414 165 VLICK-PGDCARV 176 (177)
Q Consensus 165 ~~~~~-~~~Ga~~ 176 (177)
+|+++ ++.|+++
T Consensus 367 ~~~~~~~~~G~~v 379 (395)
T 1kvk_A 367 CWETSIGAPGVSM 379 (395)
T ss_dssp EEEEEESCCCSEE
T ss_pred EEEEecCCCcEEE
Confidence 88888 8899876
No 7
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=99.83 E-value=2e-20 Score=157.29 Aligned_cols=104 Identities=18% Similarity=0.134 Sum_probs=81.5
Q ss_pred CHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhh-cccCCChHHHHHHHHHHhCCC
Q 030414 35 EEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIY-NYECGSEPLIQLNEILQRAPG 113 (177)
Q Consensus 35 ~~~~l~~~~~~l~~~~~~R~~hvv~E~~Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~-~~~vS~pelD~lv~~a~~~~G 113 (177)
+.+.+.......++. ++...+.++.++.++|+++|++.||++|+++|.+|++ .+++|+|++|.|++.+++ .|
T Consensus 213 t~~~v~~v~~~~~~~------~~~~~~~~~~~~~~aL~~~d~~~lg~lm~~~h~~l~~l~~~is~p~ld~l~~~a~~-~g 285 (335)
T 3gon_A 213 SSHMVQQIKQNINQN------FLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQD-LQ 285 (335)
T ss_dssp HHHHHHHHGGGCCHH------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTT-SS
T ss_pred HHHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHh-CC
Confidence 344455554444333 3444667788999999999999999999999999998 468999999999999997 78
Q ss_pred CceeEeecCCCCceEEEEeccc-cHHHHHHHHHH
Q 030414 114 VFGARFSGAGFRGCCLALVDAD-RAEEAASYVRS 146 (177)
Q Consensus 114 a~GaK~tGaG~GG~viaLv~~~-~~~~v~~~l~~ 146 (177)
+ |+||||||||||+|+|++++ ..+.+.+++++
T Consensus 286 ~-~akltGAG~Ggc~ial~~~~~~~~~i~~~~~~ 318 (335)
T 3gon_A 286 A-VAKSSGAGGGDCGIALSFDAQSTKTLKNRWAD 318 (335)
T ss_dssp E-EEEECTTCSSSEEEEEECSHHHHHHHHHHHHH
T ss_pred c-EEEEccccchheEEEEECCHHHHHHHHHHHHH
Confidence 6 89999999999999999754 34555554444
No 8
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=99.80 E-value=2.5e-20 Score=161.22 Aligned_cols=94 Identities=17% Similarity=0.199 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhhc-ccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEE
Q 030414 51 AKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYN-YECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCL 129 (177)
Q Consensus 51 ~~R~~hvv~E~~Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~-~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~vi 129 (177)
++|+.|.+.| ++.++++||+++|++.||++|+++|.++++. ++||+|++|+|++.+++ .|++|+||||||+|||++
T Consensus 228 ~~~~~~~i~~--~~~~~~~aL~~~d~~~lg~lm~~~~~~l~~~~~~vs~p~ld~l~~~a~~-~Ga~GaklsGaG~gG~vi 304 (357)
T 3k85_A 228 AIEAMHKIKQ--SAIDTKLALLKGDVGEFARILGEGWENKKKMAGAITNPMIQEAFDVATG-AGAMAGKVSGAGGGGFIM 304 (357)
T ss_dssp TTHHHHHHHH--HHHHHHHHHTTTCHHHHHHHHHHHHHHTTC-----------CCSCTTTT-SCCSEEEECCCC---CEE
T ss_pred HHHHHHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh-cCCeEeEecccCCCCEEE
Confidence 3578888876 7889999999999999999999999999987 99999999999999997 799999999999999999
Q ss_pred EEeccccHHHHHHHHHHH
Q 030414 130 ALVDADRAEEAASYVRSE 147 (177)
Q Consensus 130 aLv~~~~~~~v~~~l~~~ 147 (177)
+|++++.++++.++|++.
T Consensus 305 al~~~~~~~~~~~~l~~~ 322 (357)
T 3k85_A 305 FVVEPTRKEEVVRALNNL 322 (357)
T ss_dssp EECCHHHHHHHHHHHHTS
T ss_pred EEecHHHHHHHHHHHHHC
Confidence 999998888888888753
No 9
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=99.70 E-value=2.5e-17 Score=140.21 Aligned_cols=97 Identities=26% Similarity=0.343 Sum_probs=83.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccccHHHHHHH
Q 030414 64 VAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASY 143 (177)
Q Consensus 64 v~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~~~~~v~~~ 143 (177)
+.++.++|.++|++.||++|+++|. +++.+++++|++|++++.+++ .|++|+||||+|+|||+++|++++.++++.++
T Consensus 223 ~~~~~~al~~~d~~~lg~~~~~~~~-~~~~~~v~~p~l~~l~~~a~~-~Ga~ga~~SGaG~GG~v~al~~~~~a~~~~~~ 300 (321)
T 4hac_A 223 SRIGEQLVLSGDYASIGRLMNVNQG-LLDALGVNILELSQLIYSARA-AGAFGAKITGAGGGGCMVALTAPEKCNQVAEA 300 (321)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH-HHHHHTCCCHHHHHHHHHHHH-TTCSEEEECSSCSSSEEEEEECSTTHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH-HHhhcCCCCHHHHHHHHHHHH-CCCCEEEECccCCCCEEEEEcCHHHHHHHHHH
Confidence 4567899999999999999999996 445789999999999999998 79999999999999999999977788888887
Q ss_pred HHHHhHhhchhhhhhcCCCceEEEee-cCCceee
Q 030414 144 VRSEYFELQPELASQLNADSAVLICK-PGDCARV 176 (177)
Q Consensus 144 l~~~y~~~~~~~~~~~g~~~~~~~~~-~~~Ga~~ 176 (177)
|++. | ..+|.++ ...|+++
T Consensus 301 l~~~------------g--~~v~~~~~~~~G~~v 320 (321)
T 4hac_A 301 VAGA------------G--GKVTITKPTEQGLKV 320 (321)
T ss_dssp HHHT------------T--CEEEEECBCSCSSEE
T ss_pred HHhC------------C--CeEEEEEECCCceec
Confidence 7642 3 4678888 4578875
No 10
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=99.70 E-value=6.8e-17 Score=135.35 Aligned_cols=124 Identities=13% Similarity=0.116 Sum_probs=92.2
Q ss_pred ceeeeeccchHHHHHhcCcccccCCCHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 030414 10 YFHLILFSSFVILQLIMILIFFQTVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLS 89 (177)
Q Consensus 10 ~~~~~~~~~~~~l~~~~g~~~Lr~v~~~~l~~~~~~l~~~~~~R~~hvv~E~~Rv~~~~~aL~~~d~~~~G~lm~~sh~s 89 (177)
.+++++.+++..+++.-..+.+++... .++..++ +.|+ ..++.++.++|+++|++.||++|+++|.+
T Consensus 173 ~~~~vi~~~~~~~sT~~~~~~l~~~~~---------~~~~~~~-~~~~---~~~~~~~~~al~~~d~~~l~~~~~~~~~~ 239 (308)
T 2x7i_A 173 DGYMVVIDTGVKGSTRQAVHDVHKLCE---------DPQYMSH-VKHI---GKLVLRASDVIEHHKFEALADIFNECHAD 239 (308)
T ss_dssp SSEEEEEECCC--CCSCCCC-----------------CCHHHH-HHHH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CceEEEEECcCCCCHHHHHHHHHHHHh---------cCchHHH-HHHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 567888888777776544443332211 0112222 3343 34677888999999999999999999999
Q ss_pred hhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEecc-ccHHHHHHHHHHHh
Q 030414 90 SIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYVRSEY 148 (177)
Q Consensus 90 lr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~-~~~~~v~~~l~~~y 148 (177)
+++ +++++|++|++++.+++ .|++|+||||+|+|||+++|+++ +.++++.+.+.+.|
T Consensus 240 ~~~-~~~~~p~l~~l~~~~~~-~Ga~ga~~sGaG~GG~v~~l~~~~~~~~~~~~~l~~~~ 297 (308)
T 2x7i_A 240 LKA-LTVSHDKIEQLMKIGKE-NGAIAGKLTGAGRGGSMLLLAKDLPTAKNIVKAVEKAG 297 (308)
T ss_dssp HHH-HSCCCHHHHHHHHHHHH-TTCSEEEESBTTTCSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred HHH-hCCCCHHHHHHHHHHHH-CCCcEEEeeccCCCcEEEEEeCChhHHHHHHHHHHhCC
Confidence 987 79999999999999998 79999999999999999999987 66777777777644
No 11
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=99.69 E-value=5.8e-17 Score=140.62 Aligned_cols=92 Identities=16% Similarity=0.172 Sum_probs=79.9
Q ss_pred HHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccC------CChHHHHHHHHHHhCCCCceeEeecCCCC
Q 030414 53 RAEHYFTEN-RRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC------GSEPLIQLNEILQRAPGVFGARFSGAGFR 125 (177)
Q Consensus 53 R~~hvv~E~-~Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~v------S~pelD~lv~~a~~~~Ga~GaK~tGaG~G 125 (177)
+..|+++++ .++.++.++|+++|++.||++|+++|.+|++ +++ |+|++|+|++.+++ .|++ +||||||||
T Consensus 243 ~~~~~~~~~~~~~~~~~~aL~~gd~~~lg~lm~~~~~~l~~-l~v~~~~~is~p~ld~l~~~a~~-~Ga~-ak~sGAGgG 319 (365)
T 3k17_A 243 NYQHFLTRNNEIMKQIIQAFHTKDEELLYSSIKENRRILQE-LGTKAGVNIETSLLKELADSAEN-MGGA-GKSSGSGGG 319 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-HHHHHTCCCSCHHHHHHHHHHHH-TTSE-EEECTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-hhhhcCCcccCHHHHHHHHHHHh-cCCE-EEecCCCCC
Confidence 467889885 4578999999999999999999999999997 777 99999999999998 7988 999999999
Q ss_pred ceEEEEeccc-cHHHHHHHHHHH
Q 030414 126 GCCLALVDAD-RAEEAASYVRSE 147 (177)
Q Consensus 126 G~viaLv~~~-~~~~v~~~l~~~ 147 (177)
||+++|++++ ..+++.+++++.
T Consensus 320 g~vial~~~~~~~~~l~~~l~~~ 342 (365)
T 3k17_A 320 DCGIAFSKTKELAEKLVNEWEKL 342 (365)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHT
T ss_pred CEEEEEECCHHHHHHHHHHHHHC
Confidence 9999999874 466666666543
No 12
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=99.69 E-value=9.7e-17 Score=135.72 Aligned_cols=103 Identities=19% Similarity=0.282 Sum_probs=84.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccc-cHHHHH
Q 030414 63 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAA 141 (177)
Q Consensus 63 Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~-~~~~v~ 141 (177)
++.++.++|+++|++.|+++|+++|..++. +++++|+++++++.+++ .|++|+||||+|+|||+++|++++ .++++.
T Consensus 229 ~~~~~~~al~~~d~~~l~~~~~~~~~~l~~-~~~~~p~l~~l~~~~~~-~Ga~ga~~sGaG~gg~v~~l~~~~~~a~~~~ 306 (332)
T 2hfs_A 229 IVSQAREALQKGDLQRLGQLMNANHDLCRQ-IDVSCRELESIVQTCRT-YGALGAKLSGTGRGGIAVALAASSDQRDAIV 306 (332)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHH-TTCSEEEEESSCSSSEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHH-cCCceEEeccCCCCcEEEEEecCcccHHHHH
Confidence 345678899999999999999999987765 79999999999999998 899999999999999999999876 468889
Q ss_pred HHHHHHhHhhchhhhhhcCCCceEEEeecCCceee
Q 030414 142 SYVRSEYFELQPELASQLNADSAVLICKPGDCARV 176 (177)
Q Consensus 142 ~~l~~~y~~~~~~~~~~~g~~~~~~~~~~~~Ga~~ 176 (177)
++|.+.|... +. ...+.+.|++||++
T Consensus 307 ~~l~~~~~~~--------~~-~~~~~~~~~~g~~~ 332 (332)
T 2hfs_A 307 KGLKAKCPEA--------KF-IWRYTVQPSAASNL 332 (332)
T ss_dssp HHHHHHCTTC--------CE-EEEEEECCSCC---
T ss_pred HHHHHHHhcC--------Cc-eEEEEeccCCCCCC
Confidence 9998776542 21 12355779999874
No 13
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=99.66 E-value=4.2e-16 Score=133.60 Aligned_cols=84 Identities=21% Similarity=0.129 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcc-cCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccc-cHH
Q 030414 61 NRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNY-ECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAE 138 (177)
Q Consensus 61 ~~Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~-~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~-~~~ 138 (177)
+.++.++.++|.++|++.||++|+++|.++++.. ++++|++|++++.+++ .|++ +||||||||||+++|++++ .++
T Consensus 235 ~~~~~~~~~aL~~~d~~~lg~~m~~~~~~l~~l~~~v~~p~l~~l~~~a~~-~Ga~-ak~sGaGgGg~vial~~~~~~~~ 312 (337)
T 2pg9_A 235 KETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQD-LQAV-AKSSGAGGGDCGIALSFDAQSTK 312 (337)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTT-SSEE-EEECTTCSSSEEEEEECSHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHH-CCCE-EEEeCCCCccEEEEEECCHHHHH
Confidence 5567789999999999999999999999998653 3999999999999997 7999 9999999999999999764 455
Q ss_pred HHHHHHHH
Q 030414 139 EAASYVRS 146 (177)
Q Consensus 139 ~v~~~l~~ 146 (177)
++.++|++
T Consensus 313 ~~~~~l~~ 320 (337)
T 2pg9_A 313 TLKNRWAD 320 (337)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555543
No 14
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=99.62 E-value=3.8e-15 Score=123.30 Aligned_cols=84 Identities=25% Similarity=0.329 Sum_probs=75.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEecc-ccHHHHHH
Q 030414 64 VAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAAS 142 (177)
Q Consensus 64 v~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~-~~~~~v~~ 142 (177)
+.++.++|+++|++.|+++|+++|..+++ +++++|+++++++.+++ .|++|+||||+|+|||+++|+++ +.++++.+
T Consensus 200 ~~~~~~al~~~d~~~l~~~~~~~~~~l~~-~~~~~p~l~~l~~~~~~-~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~ 277 (292)
T 2oi2_A 200 TQQAEIAISQKDAEGLGQILSQAHLHLKE-IGVSSLEADSLVETALS-HGALGAKMSGGGLGGCIIALVTNLTHAQELAE 277 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHT-TTCSEEEEESSSSSSEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHh-CCCceeeeccCCCCcEEEEEecCchHHHHHHH
Confidence 56778899999999999999999999987 79999999999999997 79999999999999999999987 56778888
Q ss_pred HHHHHhH
Q 030414 143 YVRSEYF 149 (177)
Q Consensus 143 ~l~~~y~ 149 (177)
++++.|.
T Consensus 278 ~l~~~~~ 284 (292)
T 2oi2_A 278 RLEEKGA 284 (292)
T ss_dssp HHHHHTC
T ss_pred HHHhcCc
Confidence 8876543
No 15
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=99.50 E-value=2.9e-13 Score=113.60 Aligned_cols=77 Identities=31% Similarity=0.443 Sum_probs=68.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccccHHHHHHHHHH
Q 030414 67 GLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRS 146 (177)
Q Consensus 67 ~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~~~~~v~~~l~~ 146 (177)
..+++..+|++.|+++|+++|..+++ +++++|+++++++.+++ .| +|+||||+|+|||+++|++++.++++.+++++
T Consensus 229 ~~~a~~~~d~~~l~~~~~~~~~~~~~-~~~~~p~l~~~~~~~~~-~G-~ga~~sGaG~GG~v~~l~~~~~~~~~~~~l~~ 305 (317)
T 1kkh_A 229 IDEALKIKNKEDFGKLMTKNHELLKK-LNISTPKLDRIVDIGNR-FG-FGAKLTGAGGGGCVIILVNEEKEKELLKELNK 305 (317)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHT-TTCCCHHHHHHHHHHHH-HS-SEEEECSSSSSEEEEEECCGGGHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHh-cC-ceeEEeecCCCCEEEEEechhhHHHHHHHHHh
Confidence 44677889999999999999988874 79999999999999998 79 99999999999999999998877777776663
No 16
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.43 E-value=3.8e-13 Score=111.72 Aligned_cols=103 Identities=15% Similarity=0.192 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHH--HHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEE
Q 030414 54 AEHYFTENRRVAKGLEAWKSGNSQDFGKLI--SASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLAL 131 (177)
Q Consensus 54 ~~hvv~E~~Rv~~~~~aL~~~d~~~~G~lm--~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaL 131 (177)
..|.+.+..|+.++.++|.++|++.||++| |..|+.++ .+++|+++++++.+++ . ++|+||||+|+ |+++|
T Consensus 192 ~~~~~~~~~~~~~~~~al~~~d~~~~~~~~~~n~~h~~~~---~~~~p~l~~~~~~~~~-~-a~ga~~sGsG~--~v~~l 264 (296)
T 1h72_C 192 LKDLVNNVGKACGMVYALYNKDKSLFGRYMMSDKVIEPVR---GKLIPNYFKIKEEVKD-K-VYGITISGSGP--SIIAF 264 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSHHHH---HTTSTTHHHHHHHHTT-T-EEEEEECTTSS--CEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCcchhhhh---hccCccHHHHHHHHHh-h-cceEEEecCCh--heEEE
Confidence 357888888888899999999999999999 66666665 3789999999999997 6 89999999995 99999
Q ss_pred eccccHHHHHHHHHHHhHhhchhhhhhcCCCceEEEeecCCceeeC
Q 030414 132 VDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 177 (177)
Q Consensus 132 v~~~~~~~v~~~l~~~y~~~~~~~~~~~g~~~~~~~~~~~~Ga~~~ 177 (177)
++++.++++.+++.+.|.. .+++++..|++++
T Consensus 265 ~~~~~~~~~~~~l~~~~~~--------------~~~~~~~~Ga~v~ 296 (296)
T 1h72_C 265 PKEEFIDEVENILRDYYEN--------------TIRTEVGKGVEVV 296 (296)
T ss_dssp ECGGGHHHHHHHHHHHCSC--------------EEEECBCCCCEEC
T ss_pred ecHHHHHHHHHHHHHhccC--------------ceeccCCCCeEeC
Confidence 9777888888888865532 1267788999875
No 17
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.26 E-value=4e-11 Score=101.01 Aligned_cols=98 Identities=19% Similarity=0.168 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccCCChHH-------HHHHH---HHHhCCCCceeEeecCCCCceEEE
Q 030414 61 NRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPL-------IQLNE---ILQRAPGVFGARFSGAGFRGCCLA 130 (177)
Q Consensus 61 ~~Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pel-------D~lv~---~a~~~~Ga~GaK~tGaG~GG~via 130 (177)
..++..++.||.++|++.||++|+++|..|++.+..++|++ .++.+ .++. .|++++-|+|+| +|+++
T Consensus 210 ~~~~~~~~~al~~~d~~~lg~~~~~~~~~l~~~~~~~~p~~~~l~~~~~~i~~~~~~~~~-~G~~~~~~SGaG--ptv~~ 286 (317)
T 2gs8_A 210 AIDYQHMLTYLKTNNFEKVGQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKELRQ-EGFACYFTMDAG--PNVKV 286 (317)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHH-TTCCEEEECCSS--SCEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCCceeEhHHHHHHHHHHHHHHh-cCCcEEEEecCC--CeEEE
Confidence 67888899999999999999999999999998777766553 45543 4454 698899999998 99999
Q ss_pred EeccccHHHHHHHHHHHhHhhchhhhhhcCCCceEEEeecCCceee
Q 030414 131 LVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARV 176 (177)
Q Consensus 131 Lv~~~~~~~v~~~l~~~y~~~~~~~~~~~g~~~~~~~~~~~~Ga~~ 176 (177)
|++++..+++.+.+.+ .+++|++++++|+++
T Consensus 287 l~~~~~~~~v~~~l~~---------------~~~~~~~~~~~~~~~ 317 (317)
T 2gs8_A 287 LCLEKDLAQLAERLGK---------------NYRIIVSKTKDLPDV 317 (317)
T ss_dssp EEEGGGHHHHHHHHHT---------------TSEEEEEEBCCCCCC
T ss_pred EEcHHHHHHHHHHHhc---------------CCeEEEEecCCCCCC
Confidence 9988877777776664 278999999999985
No 18
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=99.21 E-value=9e-11 Score=100.49 Aligned_cols=100 Identities=16% Similarity=0.142 Sum_probs=82.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccCC-------ChHHHHHHHHHH---hCCCCceeEeecCCCCceEEEEe
Q 030414 63 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECG-------SEPLIQLNEILQ---RAPGVFGARFSGAGFRGCCLALV 132 (177)
Q Consensus 63 Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS-------~pelD~lv~~a~---~~~Ga~GaK~tGaG~GG~viaLv 132 (177)
++..+..||.++|++.|+++|.+++..|++.|.-+ +|+++++++.+. + .|++|+.++|+| +|+++|+
T Consensus 221 ~~~~l~~Al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~yl~p~~~~i~~~~~~~~~-~Ga~~a~~SGaG--Ptv~~l~ 297 (332)
T 3qt5_A 221 DLNEAKEAVKNQDFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQCRK-ANLPCYFTMDAG--PNVKVLV 297 (332)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHH-TTCCEEEECCSS--SCEEEEE
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccCCCceeeChHHHHHHHHHHHHHh-CCCcEEEEeCCC--CcEEEEE
Confidence 77889999999999999999997766777654432 589999888884 5 799999999876 9999999
Q ss_pred ccccHHHHHHHHHHHhHhhchhhhhhcCCCceEEEe-ecCCceeeC
Q 030414 133 DADRAEEAASYVRSEYFELQPELASQLNADSAVLIC-KPGDCARVI 177 (177)
Q Consensus 133 ~~~~~~~v~~~l~~~y~~~~~~~~~~~g~~~~~~~~-~~~~Ga~~~ 177 (177)
+++.++++.++|++.|. +.+++++ .|+.|++++
T Consensus 298 ~~~~a~~v~~~l~~~~~------------~~~~~v~~~~g~G~~~~ 331 (332)
T 3qt5_A 298 EKKNKQAVMEQFLKVFD------------ESKIIASDIISSGVEII 331 (332)
T ss_dssp EHHHHHHHHHHHHTTSC------------GGGEEEEEBCSSCCEEC
T ss_pred CHHHHHHHHHHHHHhCC------------CceEEEeccccCCcEec
Confidence 98778888888875443 2578888 899999875
No 19
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=99.16 E-value=1.8e-10 Score=97.16 Aligned_cols=101 Identities=18% Similarity=0.208 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHH--HHHhhhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccc
Q 030414 58 FTENRRVAKGLEAWKSGNSQDFGKLISA--SGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD 135 (177)
Q Consensus 58 v~E~~Rv~~~~~aL~~~d~~~~G~lm~~--sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~ 135 (177)
+.+..++..+..+|.++|++.|+++|+. .|+..+.. .+|+++++++.+++ .|++|++|||+| +|+++|++++
T Consensus 185 ~~~~~~~~~~~~al~~~d~~~l~~~l~nd~~~e~~~~~---~~p~l~~l~~~~~~-~Ga~ga~~SGsG--ptv~al~~~~ 258 (298)
T 3hul_A 185 VQASSIANVMIAAILRNDMTLAGEMMERDLWHEKYRSQ---LVPHLAQIRDVAKN-QGAYAACLSGAG--PTVLVFAPRN 258 (298)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHTCCCC-----CT---TGGGHHHHHHHHHT-TTCCEEEECTTS--SCEEEEECGG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHhhhHHHHHHHHh---hCchHHHHHHHHHH-CCCEEEEEeccc--hheEEEECHH
Confidence 3455667788899999999999999973 24444422 48999999999997 899999999999 7999999977
Q ss_pred cHHHHHHHHHHHhHhhchhhhhhcCCCceEEEee-cCCceee
Q 030414 136 RAEEAASYVRSEYFELQPELASQLNADSAVLICK-PGDCARV 176 (177)
Q Consensus 136 ~~~~v~~~l~~~y~~~~~~~~~~~g~~~~~~~~~-~~~Ga~~ 176 (177)
.++++.+++++. +....+++++ ...|+++
T Consensus 259 ~a~~v~~~l~~~------------~~~~~~~~~~~~~~Ga~v 288 (298)
T 3hul_A 259 LANKLQTSLQTL------------EIDADVLLLDVEGSGAEV 288 (298)
T ss_dssp GHHHHHHHHHTT------------CCSSEEEEEEBCCCCCEE
T ss_pred HHHHHHHHHHhc------------CCCcEEEEcccCCCceEE
Confidence 777776666532 4567888888 4578876
No 20
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=98.85 E-value=2.5e-09 Score=90.41 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=73.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccc-cHHHHH
Q 030414 63 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAA 141 (177)
Q Consensus 63 Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~-~~~~v~ 141 (177)
++..+..+|.++|++.+++.|.. .+...-...+|+++++.+.+++ .|++|++|||+| +|+++|++.+ .++++.
T Consensus 202 ~~~~~~~al~~~d~~~l~~~l~n---~le~~~~~~~P~l~~i~~~~~~-~Ga~ga~mSGsG--ptvfal~~~~~~a~~~~ 275 (306)
T 3pyf_A 202 EPGPVLAALAAGDPDQLAPLLGN---EMQAAAVSLDPALARALRAGVE-AGALAGIVSGSG--PTCAFLCTSASSAIDVG 275 (306)
T ss_dssp CHHHHHHHHHHTCHHHHGGGCEE---TTHHHHHHHCTHHHHHHHHHHH-TTCSEEEECTTS--SEEEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHhCCHHHHHHHhcc---chHHHHHHhChHHHHHHHHHHh-cCCCEEEEcCcc--hhheEEeCCHHHHHHHH
Confidence 35567889999999999998842 2321111248999999999998 899999999998 9999999864 456665
Q ss_pred HHHHHHhHhhchhhhhhcCCCceEEEee-cCCceeeC
Q 030414 142 SYVRSEYFELQPELASQLNADSAVLICK-PGDCARVI 177 (177)
Q Consensus 142 ~~l~~~y~~~~~~~~~~~g~~~~~~~~~-~~~Ga~~~ 177 (177)
+.+.+. |+...+++++ +..|+++.
T Consensus 276 ~~l~~~------------g~~~~v~~~~~~~~Ga~v~ 300 (306)
T 3pyf_A 276 AQLSGA------------GVCRTVRVATGPVPGARVV 300 (306)
T ss_dssp HHHHHT------------TSSSEEEEEEECCBCSEEC
T ss_pred HHHHhc------------CCcceEEEeecCCCCCEEe
Confidence 555532 6667888877 88898874
No 21
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=98.47 E-value=1e-06 Score=77.37 Aligned_cols=87 Identities=11% Similarity=-0.032 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccCCC-------hHHHHHHHHHHhC---CC-CceeEeecCCCCceEE
Q 030414 61 NRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGS-------EPLIQLNEILQRA---PG-VFGARFSGAGFRGCCL 129 (177)
Q Consensus 61 ~~Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~-------pelD~lv~~a~~~---~G-a~GaK~tGaG~GG~vi 129 (177)
..++..+..||.++|++.||++|.++|..+++.+..+. |....+.+.+.+. .| +.++-|+|+| ++++
T Consensus 251 ~~~~~~l~~AL~~gD~~~~g~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~r~~~Ga~~~a~~SGaG--Ptv~ 328 (416)
T 1fi4_A 251 PKRFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAG--PNAV 328 (416)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEEECSS--SCEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCceeeecHHHHHHHHHHHHHHHhcCCceEEEEecCC--CcEE
Confidence 46778899999999999999999999988887555444 4557776655331 27 6788899998 8999
Q ss_pred EEeccccHHHHHHHHHHHhH
Q 030414 130 ALVDADRAEEAASYVRSEYF 149 (177)
Q Consensus 130 aLv~~~~~~~v~~~l~~~y~ 149 (177)
+|++++..+++.+++.+.|.
T Consensus 329 al~~~~~~~~v~~~l~~~~~ 348 (416)
T 1fi4_A 329 LYYLAENESKLFAFIYKLFG 348 (416)
T ss_dssp EEEEGGGHHHHHHHHHHHHT
T ss_pred EEECHHHHHHHHHHHHHhcc
Confidence 99988888899999998776
No 22
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=98.41 E-value=3.4e-06 Score=73.10 Aligned_cols=88 Identities=16% Similarity=0.128 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhh------ccc-CCChHHHHHHHHHHh--CC-C-CceeEeecCCCCceEE
Q 030414 61 NRRVAKGLEAWKSGNSQDFGKLISASGLSSIY------NYE-CGSEPLIQLNEILQR--AP-G-VFGARFSGAGFRGCCL 129 (177)
Q Consensus 61 ~~Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~------~~~-vS~pelD~lv~~a~~--~~-G-a~GaK~tGaG~GG~vi 129 (177)
..++..+..||.++|++.||++|.+++..|++ .+. .-.|....+++.+.+ .. | ++++-++|+| .+++
T Consensus 222 ~~~~~~l~~Al~~~D~~~lg~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~~~~~Ga~~~a~~SGaG--Ptv~ 299 (380)
T 2hke_A 222 PERMKIASRAIKARDFATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRTALAYTFDAG--ANCF 299 (380)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSS--SCEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccCCCeeEECHHHHHHHHHHHHHHHhcCCcceEEEECCC--CcEE
Confidence 55677888999999999999999887777764 221 236777777776543 13 8 7788999776 8999
Q ss_pred EEeccccHHHHHHHHHHHhHh
Q 030414 130 ALVDADRAEEAASYVRSEYFE 150 (177)
Q Consensus 130 aLv~~~~~~~v~~~l~~~y~~ 150 (177)
+|++++..+++.+++.+.|..
T Consensus 300 ~l~~~~~~~~v~~~l~~~~~~ 320 (380)
T 2hke_A 300 LFVLKEDLPEAVAMLMEHFPT 320 (380)
T ss_dssp EEEEGGGHHHHHHHHHHHSCC
T ss_pred EEECHHHHHHHHHHHHHhccc
Confidence 999887888899999877753
No 23
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=98.30 E-value=7.9e-06 Score=72.15 Aligned_cols=94 Identities=13% Similarity=0.031 Sum_probs=71.7
Q ss_pred HHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccC-------CChHHHHHHHHHHhC----CCCceeEeec
Q 030414 55 EHYFTE--NRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-------GSEPLIQLNEILQRA----PGVFGARFSG 121 (177)
Q Consensus 55 ~hvv~E--~~Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~v-------S~pelD~lv~~a~~~----~Ga~GaK~tG 121 (177)
.+.+.. ..|+..+.+||.++|++.||+++......|+..|.- =+|+...+++.+.+. .|++++.++|
T Consensus 240 ~~~v~~~~~~~~~~l~~AL~~gD~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~~~~~tsd 319 (414)
T 3f0n_A 240 KFRAESVVPERMKEMTRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFD 319 (414)
T ss_dssp HHHHHHTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 455553 577888999999999999999987665556643322 257766666666542 2889999999
Q ss_pred CCCCceEEEEeccccHHHHHHHHHHHhHh
Q 030414 122 AGFRGCCLALVDADRAEEAASYVRSEYFE 150 (177)
Q Consensus 122 aG~GG~viaLv~~~~~~~v~~~l~~~y~~ 150 (177)
|| ..+++|++++..+++.+.|.+.|..
T Consensus 320 AG--Pnv~vl~~~~~~~~v~~~l~~~f~~ 346 (414)
T 3f0n_A 320 AG--PNAVIFTLEDTVAEFVAAVRHSFPP 346 (414)
T ss_dssp SS--SCEEEEEEHHHHHHHHHHHHHHSCC
T ss_pred CC--CCEEEEEecccHHHHHHHHHHhcCC
Confidence 99 8889999999999999999876654
No 24
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=98.19 E-value=1e-05 Score=69.21 Aligned_cols=89 Identities=10% Similarity=0.081 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhhcccC-------CChHHHHHHHHHHh---CCCCceeEeecCCCCceEE
Q 030414 60 ENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-------GSEPLIQLNEILQR---APGVFGARFSGAGFRGCCL 129 (177)
Q Consensus 60 E~~Rv~~~~~aL~~~d~~~~G~lm~~sh~slr~~~~v-------S~pelD~lv~~a~~---~~Ga~GaK~tGaG~GG~vi 129 (177)
...++..+.+||+++|++.|+++|...+..|++.+.- =.|+...+++.+.+ ..|++|+.++||| +.++
T Consensus 212 ~~~~~~~l~~AL~~gD~~~l~~~~~~d~~~LHa~~~~~~P~~~~l~p~s~~i~~~v~~~r~~~G~~~~~tsgAG--Pnv~ 289 (323)
T 3lto_A 212 AEANLKLLLNAFENKDWTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDGPVVTMDAG--PNVH 289 (323)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHHHSCCCEEECCSS--SCEE
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhHHHhccCCCceecCchHHHHHHHHHHHHHhCCCeEEEEECCC--CCeE
Confidence 3467888999999999999999988776667642211 25666665555543 3689999999999 7788
Q ss_pred EEeccccHHHHHHHHHHHhHh
Q 030414 130 ALVDADRAEEAASYVRSEYFE 150 (177)
Q Consensus 130 aLv~~~~~~~v~~~l~~~y~~ 150 (177)
+|++++..+++.+.|.+.+..
T Consensus 290 ~l~~~~~~~~v~~~l~~~~~~ 310 (323)
T 3lto_A 290 LLYRSDQTDLARQFKSDHLVG 310 (323)
T ss_dssp EEECGGGHHHHHHHHHHHTTT
T ss_pred EEEecccHHHHHHHHHHHhHh
Confidence 899999999999999866543
No 25
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=98.11 E-value=5e-06 Score=68.33 Aligned_cols=59 Identities=20% Similarity=0.239 Sum_probs=45.9
Q ss_pred CChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccc-cHHHHHHHHHHHhHhhchhhhhhcCCCceEEEeecCCc
Q 030414 97 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDC 173 (177)
Q Consensus 97 S~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~-~~~~v~~~l~~~y~~~~~~~~~~~g~~~~~~~~~~~~G 173 (177)
++|+++++++.+++ .|++|++|||+| +|+++|++.+ .++++.+++.+ .. .+|++++++|
T Consensus 209 ~~p~l~~l~~~~~~-~Ga~ga~~SGsG--~~v~~l~~~~~~~~~~~~~l~~--------------~~-~~~~~~~~~g 268 (275)
T 1uek_A 209 LFPELKEVRGRMRA-LGLRGVLMSGSG--SAFFGLAEGPDHARRAAEALRA--------------WG-RAWAGTLGGG 268 (275)
T ss_dssp HCTHHHHHHHHHHH-TTCEEEEECTTS--SCEEEECSSHHHHHHHHHHHTT--------------TS-EEEEEEECCC
T ss_pred hChHHHHHHHHHHh-CCCCEEEEeccc--cCeEEEeCCHHHHHHHHHHhhh--------------cc-EEEEEEecCC
Confidence 47999999999998 799999999999 7999999764 45555444432 23 6888887666
No 26
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=97.66 E-value=4.2e-06 Score=68.80 Aligned_cols=66 Identities=14% Similarity=-0.044 Sum_probs=49.4
Q ss_pred HHHhCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCCceeE-eecCCCCceEEEEeccc-cHHHHHH
Q 030414 69 EAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGAR-FSGAGFRGCCLALVDAD-RAEEAAS 142 (177)
Q Consensus 69 ~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga~GaK-~tGaG~GG~viaLv~~~-~~~~v~~ 142 (177)
.+|.++|++.|+++|. +.+.+.-...+|+++++++.+++ .|+ ++ |||+| +|+++|++++ .++++.+
T Consensus 193 ~al~~~d~~~~~~~~~---n~l~~~~~~~~p~l~~~~~~~~~-~Ga--a~~mSGsG--~~v~~l~~~~~~a~~~~~ 260 (271)
T 2v8p_A 193 EEKIQRIISGEVEEIE---NVLGDIARELYPEINEVYRFVEY-LGF--KPFVSGSG--STVYFFGGASEELKKAAK 260 (271)
T ss_dssp HHHHHHHHTTCGGGCC---BHHHHHHHHHCHHHHHHHHHHHH-TTC--CCEECTTS--SCEEESSCCCHHHHHHHH
T ss_pred HHhhcCCHHHHHHHHh---CChhhHhHHhChHHHHHHHHHHh-CCC--ccCccccC--cCeEEEeCCHHHHHHHHh
Confidence 7788889999988873 12322223458999999999997 798 89 99998 8999999875 3444443
No 27
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=96.58 E-value=0.0012 Score=54.63 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=34.2
Q ss_pred CChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEecccc-HHHHHHHH
Q 030414 97 GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAASYV 144 (177)
Q Consensus 97 S~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~~-~~~v~~~l 144 (177)
.+|+++++++.+++ .| |++|||+| +|+++|++++. ++++.+++
T Consensus 218 ~~p~l~~i~~~~~~-~G--~a~~SGsG--~tvf~l~~~~~~a~~~~~~l 261 (283)
T 2ww4_A 218 RFREVDAVLSWLLE-YA--PSRLTGTG--ACVFAEFDTESEARQVLEQA 261 (283)
T ss_dssp HCHHHHHHHHHHHT-TS--CEEECTTS--SCEEEEESSHHHHHHHHHHC
T ss_pred cChHHHHHHHHHHH-cC--CceECCcc--cceEEEeCCHHHHHHHHHHh
Confidence 48999999999987 78 89999998 89999997642 44544444
No 28
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=71.96 E-value=17 Score=25.34 Aligned_cols=68 Identities=16% Similarity=0.138 Sum_probs=44.3
Q ss_pred CChHHHHHHHHHHhCCCCceeE---eecCCC--Cc-----------------eEEEEeccccHHHHHHHHHHHhHhhchh
Q 030414 97 GSEPLIQLNEILQRAPGVFGAR---FSGAGF--RG-----------------CCLALVDADRAEEAASYVRSEYFELQPE 154 (177)
Q Consensus 97 S~pelD~lv~~a~~~~Ga~GaK---~tGaG~--GG-----------------~viaLv~~~~~~~v~~~l~~~y~~~~~~ 154 (177)
....+|.+.+++.+ .|+.|.. ..|-|- |. -+..+|+++.++++++++.+......|
T Consensus 9 ~~~~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~~tg~~- 86 (112)
T 2eg2_A 9 KPFKLDEVKDALVE-IGIGGMTVTEVKGFGQQKGHTEIYRGTEYVIDFLPKVKIEVVVRDEDVEKVVETIVKTAQTGRV- 86 (112)
T ss_dssp CGGGHHHHHHHHHH-TTCCCCEEEEEEEC-----------------CCEEEEEEEEEECGGGHHHHHHHHHHHHCCSST-
T ss_pred CHHHHHHHHHHHHH-CCCCeEEEEEeEeecccCCCceeeeccccccccccEEEEEEEEcHHHHHHHHHHHHHHhcCCCC-
Confidence 45667888888877 7876653 334342 11 477788899999999999988755322
Q ss_pred hhhhcCCCceEEEeecCC
Q 030414 155 LASQLNADSAVLICKPGD 172 (177)
Q Consensus 155 ~~~~~g~~~~~~~~~~~~ 172 (177)
| +..+|++...+
T Consensus 87 -----G-dGkiFV~pVe~ 98 (112)
T 2eg2_A 87 -----G-DGKIFIIPVED 98 (112)
T ss_dssp -----T-CCEEEEEECSC
T ss_pred -----C-CEEEEEEEhHh
Confidence 2 45677765443
No 29
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=69.05 E-value=15 Score=25.70 Aligned_cols=67 Identities=15% Similarity=0.060 Sum_probs=45.0
Q ss_pred CChHHHHHHHHHHhCCCCcee---EeecCCCC--c-----------------eEEEEeccccHHHHHHHHHHHhHhhchh
Q 030414 97 GSEPLIQLNEILQRAPGVFGA---RFSGAGFR--G-----------------CCLALVDADRAEEAASYVRSEYFELQPE 154 (177)
Q Consensus 97 S~pelD~lv~~a~~~~Ga~Ga---K~tGaG~G--G-----------------~viaLv~~~~~~~v~~~l~~~y~~~~~~ 154 (177)
....+|.+.+++.+ .|+.|. ...|-|-- . -+..+|+++.++.+++++.+......|
T Consensus 9 ~~~~~~~V~~aL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~tg~~- 86 (116)
T 1vfj_A 9 RPEKLNEVLKALFQ-AEVRGLTLSRVQGHGGETERVETYRGTTVKMELHEKVRLEIGVSEPFVKPTVEAILKAARTGEV- 86 (116)
T ss_dssp CGGGHHHHHHHHHH-TTCCCCEEEEEEEECTTCCCHHHHTTSCCSTTCEEEEEEEEEECGGGHHHHHHHHHHHHCCSST-
T ss_pred CHHHHHHHHHHHHh-CCCCeEEEEeeEeEcCccCCccceeceeeeeccCceEEEEEEEcHHHHHHHHHHHHHHhcCCCC-
Confidence 45667888888877 787665 33444421 2 588889999999999999987654322
Q ss_pred hhhhcCCCceEEEeecC
Q 030414 155 LASQLNADSAVLICKPG 171 (177)
Q Consensus 155 ~~~~~g~~~~~~~~~~~ 171 (177)
| +..+|++...
T Consensus 87 -----G-dGkiFV~pVe 97 (116)
T 1vfj_A 87 -----G-DGKIFVLPVE 97 (116)
T ss_dssp -----T-CCEEEEEECS
T ss_pred -----C-CEEEEEEEhH
Confidence 2 4566665533
No 30
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=66.87 E-value=13 Score=26.34 Aligned_cols=66 Identities=17% Similarity=0.273 Sum_probs=44.2
Q ss_pred CChHHHHHHHHHHhCCCCceeE---eecCCC-Cce------------------EEEEeccccHHHHHHHHHHHhHhhchh
Q 030414 97 GSEPLIQLNEILQRAPGVFGAR---FSGAGF-RGC------------------CLALVDADRAEEAASYVRSEYFELQPE 154 (177)
Q Consensus 97 S~pelD~lv~~a~~~~Ga~GaK---~tGaG~-GG~------------------viaLv~~~~~~~v~~~l~~~y~~~~~~ 154 (177)
....+|.+.+++.+ .|+.|.. ..|-|- .|. +..+|+++.++++++++.+......|
T Consensus 11 ~~~~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~g~~~~~~G~~~~~~~~pK~~ieivv~de~v~~vv~~I~~~~~tg~~- 88 (119)
T 2j9c_A 11 RPEKLEIVKKALSD-AGYVGMTVSEVKGRGVQGGIVERYRGREYIVDLIPKVKIELVVKEEDVDNVIDIICENARTGNP- 88 (119)
T ss_dssp CGGGHHHHHHHHHH-TTCCCEEEEEEEEECCSSSSCCEETTEECSSSCEEEEEEEEEEEGGGHHHHHHHHHHHHCCSST-
T ss_pred CHHHHHHHHHHHHH-CCCCeEEEEeeEeecccCCccceeeccccccccCcEEEEEEEEcHHHHHHHHHHHHHHhcCCCC-
Confidence 45678888888887 7886653 334442 221 68888999999999999988754322
Q ss_pred hhhhcCCCceEEEeec
Q 030414 155 LASQLNADSAVLICKP 170 (177)
Q Consensus 155 ~~~~~g~~~~~~~~~~ 170 (177)
| +..+|++..
T Consensus 89 -----G-dGkiFV~pV 98 (119)
T 2j9c_A 89 -----G-DGKIFVIPV 98 (119)
T ss_dssp -----T-CEEEEEEEE
T ss_pred -----C-CEEEEEEEh
Confidence 2 345666543
No 31
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=62.71 E-value=26 Score=24.36 Aligned_cols=68 Identities=18% Similarity=0.211 Sum_probs=44.6
Q ss_pred CChHHHHHHHHHHhCCCCcee---EeecCCC-Cc------------------eEEEEeccccHHHHHHHHHHHhHhhchh
Q 030414 97 GSEPLIQLNEILQRAPGVFGA---RFSGAGF-RG------------------CCLALVDADRAEEAASYVRSEYFELQPE 154 (177)
Q Consensus 97 S~pelD~lv~~a~~~~Ga~Ga---K~tGaG~-GG------------------~viaLv~~~~~~~v~~~l~~~y~~~~~~ 154 (177)
....++.+.+++.+ .|+.|. ...|-|- .| -+..+|+++.++++++++.+......|
T Consensus 11 r~~~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~g~~~~~~g~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~tg~~- 88 (114)
T 3bzq_A 11 KPFTLDDVKTSLED-AGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVDFVPKVRIEVVVDDSIVDKVVDSIVRAARTGKI- 88 (114)
T ss_dssp CGGGHHHHHHHHHH-TTCCCCEEEEEEEECC---------------CEEEEEEEEEEEETTTHHHHHHHHHHHHCCSST-
T ss_pred CHHHHHHHHHHHHH-CCCCeEEEEeeEEeccccCcccceeccccccccccEEEEEEEECHHHHHHHHHHHHHHhcCCCC-
Confidence 45667888888877 787655 3344442 22 377778889999999999988765332
Q ss_pred hhhhcCCCceEEEeecCC
Q 030414 155 LASQLNADSAVLICKPGD 172 (177)
Q Consensus 155 ~~~~~g~~~~~~~~~~~~ 172 (177)
| +..+|++...+
T Consensus 89 -----G-dGkiFV~pVe~ 100 (114)
T 3bzq_A 89 -----G-DGKVWVSPVDT 100 (114)
T ss_dssp -----T-CCEEEEEEESC
T ss_pred -----C-CEEEEEEEhHH
Confidence 2 45677765443
No 32
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=62.03 E-value=12 Score=26.89 Aligned_cols=53 Identities=11% Similarity=0.098 Sum_probs=38.9
Q ss_pred ChHHHHHHHHHHhCCCCceeEeecCCCCc-----eEEEEeccccHHHHHHHHHHHhHhh
Q 030414 98 SEPLIQLNEILQRAPGVFGARFSGAGFRG-----CCLALVDADRAEEAASYVRSEYFEL 151 (177)
Q Consensus 98 ~pelD~lv~~a~~~~Ga~GaK~tGaG~GG-----~viaLv~~~~~~~v~~~l~~~y~~~ 151 (177)
...+|.+.++..+ .|..|.+++=.|++| .+...|+++.++++++.+.+.-..+
T Consensus 15 p~kld~V~~AL~~-~G~~~t~v~~~gGf~r~g~~~leivV~De~Vd~vi~~I~~~a~TR 72 (114)
T 3m05_A 15 DKDANYLSDQFID-QNVRATKLSTTGGFLQSGNTTFMIGIEEERVPEVLEIIKKASHTR 72 (114)
T ss_dssp HHHHHHHHHHHHH-TTCCEEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHHHH-CCCCEEEEEEeccccccCCEEEEEEEcHHHHHHHHHHHHHHcCCc
Confidence 4567888777776 898888777554333 3556677889999999999876654
No 33
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=61.46 E-value=30 Score=24.10 Aligned_cols=68 Identities=16% Similarity=0.128 Sum_probs=43.8
Q ss_pred CChHHHHHHHHHHhCCCCceeE---eecCCC--Cc-----------------eEEEEeccccHHHHHHHHHHHhHhhchh
Q 030414 97 GSEPLIQLNEILQRAPGVFGAR---FSGAGF--RG-----------------CCLALVDADRAEEAASYVRSEYFELQPE 154 (177)
Q Consensus 97 S~pelD~lv~~a~~~~Ga~GaK---~tGaG~--GG-----------------~viaLv~~~~~~~v~~~l~~~y~~~~~~ 154 (177)
....+|.+.+++.+ .|+.|.. ..|-|- |. -+..+|+++.++++++++.+......|
T Consensus 11 ~~~~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~K~~ieivv~d~~v~~vv~~I~~~~~tg~~- 88 (114)
T 2gw8_A 11 KPFKLDDVREALTE-IGITGMTVSEVKGFGRQKGHTEIYRGAEYAVDFLPKIKIELVLADDAVERAIDVIVEVARSGKI- 88 (114)
T ss_dssp CGGGHHHHHHHHHH-TTCCCCEEEEEEEECC--------------CCEEEEEEEEEEEEGGGHHHHHHHHHHHHCCSST-
T ss_pred CHHHHHHHHHHHHH-CCCCeEEEEeeEeecccCCCccceecccccccccceEEEEEEEcHHHHHHHHHHHHHHhCCCCC-
Confidence 45667888888877 7886653 334342 11 455667888999999999988755322
Q ss_pred hhhhcCCCceEEEeecCC
Q 030414 155 LASQLNADSAVLICKPGD 172 (177)
Q Consensus 155 ~~~~~g~~~~~~~~~~~~ 172 (177)
| +..+|++...+
T Consensus 89 -----G-dGkiFV~pVe~ 100 (114)
T 2gw8_A 89 -----G-DGKIFVLPVEE 100 (114)
T ss_dssp -----T-CCEEEEEEESC
T ss_pred -----C-CEEEEEEEhHH
Confidence 2 45677765443
No 34
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=61.23 E-value=34 Score=24.95 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=44.8
Q ss_pred CChHHHHHHHHHHhCCCCceeEe---ecCCCC-c-------------------eEEEEeccccHHHHHHHHHHHhHhhch
Q 030414 97 GSEPLIQLNEILQRAPGVFGARF---SGAGFR-G-------------------CCLALVDADRAEEAASYVRSEYFELQP 153 (177)
Q Consensus 97 S~pelD~lv~~a~~~~Ga~GaK~---tGaG~G-G-------------------~viaLv~~~~~~~v~~~l~~~y~~~~~ 153 (177)
....++.+.+++.+ .|+.|..+ .|-|-- | -+..+|+++.++++++.+.+......|
T Consensus 21 r~~k~~~V~~AL~~-~G~~G~Tv~~v~G~G~q~g~~~~~rG~~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~~~~tg~~ 99 (135)
T 2o66_A 21 RPWRIQQVSSALLK-IGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVKKDQVESVINTIIEGARTGEI 99 (135)
T ss_dssp CGGGHHHHHHHHHH-TTCCCCEEEEEEECC---------------CCCCEEEEEEEEEEEGGGHHHHHHHHHHHHCCSST
T ss_pred CHHHHHHHHHHHHH-CCCceEEEEeeEeEeccCCCceeEcceeeeccccCceEEEEEEEcHHHHHHHHHHHHHHhCCCCC
Confidence 35667888888877 78876643 455532 2 377788889999999999988765322
Q ss_pred hhhhhcCCCceEEEeecC
Q 030414 154 ELASQLNADSAVLICKPG 171 (177)
Q Consensus 154 ~~~~~~g~~~~~~~~~~~ 171 (177)
| +..+|++...
T Consensus 100 ------G-dGkIFV~pVe 110 (135)
T 2o66_A 100 ------G-DGKIFVLPVS 110 (135)
T ss_dssp ------T-CCEEEEEEEC
T ss_pred ------C-CEEEEEEEhH
Confidence 2 3567766543
No 35
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=60.81 E-value=38 Score=23.38 Aligned_cols=66 Identities=21% Similarity=0.209 Sum_probs=43.0
Q ss_pred CChHHHHHHHHHHhCCCCceeEe---ecCCC-Cc------------------eEEEEeccccHHHHHHHHHHHhHhhchh
Q 030414 97 GSEPLIQLNEILQRAPGVFGARF---SGAGF-RG------------------CCLALVDADRAEEAASYVRSEYFELQPE 154 (177)
Q Consensus 97 S~pelD~lv~~a~~~~Ga~GaK~---tGaG~-GG------------------~viaLv~~~~~~~v~~~l~~~y~~~~~~ 154 (177)
....+|.+.+++.+ .|+.|..+ .|-|- +| -+..+|+++.++++++++.+......|
T Consensus 9 ~~~~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~~tg~~- 86 (112)
T 1hwu_A 9 KPFKLDEVRESLAE-VGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIEVVVDDKVVEQAVDAIIKAARTGKI- 86 (112)
T ss_dssp CGGGHHHHHHHHHH-TTCCCCEEEEEEEEC-------------CCCCEEEEEEEEEEECGGGHHHHHHHHHHHHCCSST-
T ss_pred CHHHHHHHHHHHHH-CCCCeEEEEeeEeEcCccCCccccccccccccccceEEEEEEEcHHHHHHHHHHHHHHhcCCCC-
Confidence 45667888888877 78866543 44442 22 455667888999999999988765332
Q ss_pred hhhhcCCCceEEEeec
Q 030414 155 LASQLNADSAVLICKP 170 (177)
Q Consensus 155 ~~~~~g~~~~~~~~~~ 170 (177)
| +..+|++..
T Consensus 87 -----G-dGkiFV~~V 96 (112)
T 1hwu_A 87 -----G-DGKIFVQEV 96 (112)
T ss_dssp -----T-CCEEEEEEC
T ss_pred -----C-CEEEEEEEh
Confidence 2 356666543
No 36
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=58.53 E-value=35 Score=24.34 Aligned_cols=53 Identities=26% Similarity=0.261 Sum_probs=37.7
Q ss_pred CChHHHHHHHHHHhCCCCceeEee---cCCCC-c----------eEEEEeccccHHHHHHHHHHHhHh
Q 030414 97 GSEPLIQLNEILQRAPGVFGARFS---GAGFR-G----------CCLALVDADRAEEAASYVRSEYFE 150 (177)
Q Consensus 97 S~pelD~lv~~a~~~~Ga~GaK~t---GaG~G-G----------~viaLv~~~~~~~v~~~l~~~y~~ 150 (177)
..+.+|.+.+++.+ .|+-|.-++ |-|-. | -+..+++++.++++++++.+....
T Consensus 33 r~~k~e~V~~aL~~-~Gi~G~TV~~V~G~G~q~~~t~~~~g~kv~IeiVv~de~ve~vv~~I~~~~~t 99 (119)
T 2cz4_A 33 ESLLEKRLVEEVKR-LGAKGYTITPARGEGSRGIRSVDWEGQNIRLETIVSEEVALRILQRLQEEYFP 99 (119)
T ss_dssp EGGGHHHHHHHHHH-TTCCCCEEEEEBCTTCCCTTCSCSTTCEEEEEEEECHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHh-CCCCcEEEcCCEEecCCCCccccccCCCEEEEEEECHHHHHHHHHHHHHHhcC
Confidence 35778899988887 788666433 33321 1 467788888999999999965543
No 37
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=57.42 E-value=46 Score=23.22 Aligned_cols=68 Identities=16% Similarity=0.200 Sum_probs=45.7
Q ss_pred CChHHHHHHHHHHhCCCCcee---EeecCCCCc-------------------eEEEEeccccHHHHHHHHHHHhHhhchh
Q 030414 97 GSEPLIQLNEILQRAPGVFGA---RFSGAGFRG-------------------CCLALVDADRAEEAASYVRSEYFELQPE 154 (177)
Q Consensus 97 S~pelD~lv~~a~~~~Ga~Ga---K~tGaG~GG-------------------~viaLv~~~~~~~v~~~l~~~y~~~~~~ 154 (177)
....++.+.+++.+ .|+.|. ...|-|--+ -+..+|+++.++++++++.+......|
T Consensus 13 r~~~~~~v~~AL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~tg~~- 90 (116)
T 2ns1_B 13 KPFKLEDVREALSS-IGIQGLTVTEVKGFGRQKGHAELYRGAEFSVNFLPKVKIDVAIADDQLDEVIDIVSKAAYTGKI- 90 (116)
T ss_dssp CGGGHHHHHHHHHH-TTCCCCEEEEEEECSSSCCCCEEETTEEECCCCEEEEEEEEEEEGGGHHHHHHHHHHHHCCSST-
T ss_pred CHHHHHHHHHHHHH-CCCCeEEEEeeEeEcCcCCCccceecceeecccccEEEEEEEEcHHHHHHHHHHHHHHhcCCCC-
Confidence 45667888888877 787655 445555322 455667888999999999988765332
Q ss_pred hhhhcCCCceEEEeecCC
Q 030414 155 LASQLNADSAVLICKPGD 172 (177)
Q Consensus 155 ~~~~~g~~~~~~~~~~~~ 172 (177)
| +..+|++...+
T Consensus 91 -----G-dGkiFV~pVe~ 102 (116)
T 2ns1_B 91 -----G-DGKIFVAELQR 102 (116)
T ss_dssp -----T-CCEEEEEEESC
T ss_pred -----C-CEEEEEEEhHH
Confidence 2 56777765443
No 38
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=47.98 E-value=54 Score=23.27 Aligned_cols=68 Identities=19% Similarity=0.238 Sum_probs=43.7
Q ss_pred CChHHHHHHHHHHhCCCCceeE---eecCCCC-c------------------eEEEEeccccHHHHHHHHHHHhHhhchh
Q 030414 97 GSEPLIQLNEILQRAPGVFGAR---FSGAGFR-G------------------CCLALVDADRAEEAASYVRSEYFELQPE 154 (177)
Q Consensus 97 S~pelD~lv~~a~~~~Ga~GaK---~tGaG~G-G------------------~viaLv~~~~~~~v~~~l~~~y~~~~~~ 154 (177)
....+|.+.+++.+ .|+.|.. ..|-|-- | -+...|+++.++++++.+.+.-..-.|
T Consensus 9 rp~kl~~Vk~AL~~-~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~~a~TG~~- 86 (118)
T 3t9z_A 9 RPEKLECVKKALEE-RGFVGMTVTEVKGRGEQKGIRLQFRGREVEVDLLQKTKVEVVVSDDAVDEVVEAIVSSARTGKF- 86 (118)
T ss_dssp CGGGHHHHHHHHHH-TTCCCEEEEEEEEEC-----------------CEEEEEEEEEECGGGHHHHHHHHHHHHCCSST-
T ss_pred CHHHHHHHHHHHHH-CCCceEEEEeeEeecCcCCCccccccceeeecccceEEEEEEEChHHHHHHHHHHHHHhcCCCC-
Confidence 34678888888877 7887754 4455531 2 256677888999999999987543211
Q ss_pred hhhhcCCCceEEEeecCC
Q 030414 155 LASQLNADSAVLICKPGD 172 (177)
Q Consensus 155 ~~~~~g~~~~~~~~~~~~ 172 (177)
| +-.+|++...+
T Consensus 87 -----G-DGkIFV~~Ve~ 98 (118)
T 3t9z_A 87 -----G-DGRIFVIPVEK 98 (118)
T ss_dssp -----T-CCEEEEEECCE
T ss_pred -----C-CeEEEEEEhHH
Confidence 2 45677765443
No 39
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=44.71 E-value=55 Score=23.24 Aligned_cols=68 Identities=24% Similarity=0.395 Sum_probs=44.6
Q ss_pred CChHHHHHHHHHHhCCCCcee---EeecCCCC-c------------------eEEEEeccccHHHHHHHHHHHhHhhchh
Q 030414 97 GSEPLIQLNEILQRAPGVFGA---RFSGAGFR-G------------------CCLALVDADRAEEAASYVRSEYFELQPE 154 (177)
Q Consensus 97 S~pelD~lv~~a~~~~Ga~Ga---K~tGaG~G-G------------------~viaLv~~~~~~~v~~~l~~~y~~~~~~ 154 (177)
....+|.+.+++.+ .|+.|. ...|-|-- | -+...|+++.++++++.+.+.-..-.|
T Consensus 9 rp~kl~~Vk~AL~~-~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~kieivV~de~ve~vv~~I~~~a~TG~~- 86 (119)
T 3ncq_A 9 RAEKFPEVKAALEE-RGFYGMTVTDVKGRGQQGGMQIQFRGRTMEVTLLPKVKLEIVVKDDAVEEVIGLIVNSAFTGSP- 86 (119)
T ss_dssp CTTTHHHHHHHHHH-TTCCCEEEEEEEEECSTTTTCBCSSSSCBCCCCEEEEEEEEEECGGGHHHHHHHHHHHHCCSST-
T ss_pred CHHHHHHHHHHHHH-CCCCeEEEEeeEeEcCccCCccccccceeeecccceEEEEEEEcHHHHHHHHHHHHHHhcCCCC-
Confidence 34567888888877 788775 44565531 2 256777888999999999986543211
Q ss_pred hhhhcCCCceEEEeecCC
Q 030414 155 LASQLNADSAVLICKPGD 172 (177)
Q Consensus 155 ~~~~~g~~~~~~~~~~~~ 172 (177)
| +-.+|++...+
T Consensus 87 -----G-DGkIFV~~Ve~ 98 (119)
T 3ncq_A 87 -----G-DGKIFIIPVED 98 (119)
T ss_dssp -----T-CCEEEEEECSE
T ss_pred -----C-CCEEEEEEhHh
Confidence 2 45677665443
No 40
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=41.04 E-value=15 Score=25.18 Aligned_cols=55 Identities=15% Similarity=0.373 Sum_probs=41.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCC-ceeEeec
Q 030414 66 KGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGV-FGARFSG 121 (177)
Q Consensus 66 ~~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga-~GaK~tG 121 (177)
.+..+|+...+..+|+|+..+...|...-++.-.-+++|.+...+ .|- +|..+.+
T Consensus 22 Ra~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~-~GL~~gm~l~~ 77 (86)
T 3k4g_A 22 RSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVLAS-RGLSLGMRLEN 77 (86)
T ss_dssp HHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHT-TTCCSSCCEES
T ss_pred HHHHHHHHcCCCcHHHHHhCCHHHHhhccccCcccHHHHHHHHHH-cCCCcCCCccc
Confidence 355677888899999999999888876666777778898888876 674 5555443
No 41
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=37.34 E-value=58 Score=23.01 Aligned_cols=50 Identities=12% Similarity=0.046 Sum_probs=33.0
Q ss_pred ChHHHHHHHHHHhCCCCceeEe----ecCCCCc----------------eEEEEeccccHHHHHHHHHHHh
Q 030414 98 SEPLIQLNEILQRAPGVFGARF----SGAGFRG----------------CCLALVDADRAEEAASYVRSEY 148 (177)
Q Consensus 98 ~pelD~lv~~a~~~~Ga~GaK~----tGaG~GG----------------~viaLv~~~~~~~v~~~l~~~y 148 (177)
-|-.++|++.+++ .|+-|+-+ .|-|..| .+.+..++++++.+.+.+.+-+
T Consensus 29 ~pL~~~Iv~~~~~-~GiaGaTV~rgi~GfG~~g~ih~~~~l~ls~dlPV~Ie~Vd~~eki~~~l~~l~~~v 98 (114)
T 1o51_A 29 KPLFEYLVKRAYE-LGMKGVTVYRGIMGFGHKRHMHRSDFFSLSPDLPIVLEIVDEEERINLFLKEIDNID 98 (114)
T ss_dssp EEHHHHHHHHHHH-TTCSCCEEEECSCCCCC-------------CCCEEEEEEEECHHHHHHHHHHHHTCC
T ss_pred eEHHHHHHHHHHH-CCCCeEEEEcCcEEECCCCCEEccceeecCCCCCEEEEEEcCHHHHHHHHHHHHHHh
Confidence 3667899999998 79888866 3444444 2334445667888888877543
No 42
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=35.23 E-value=11 Score=21.26 Aligned_cols=12 Identities=25% Similarity=0.185 Sum_probs=6.2
Q ss_pred cHHHHHHHHHHH
Q 030414 136 RAEEAASYVRSE 147 (177)
Q Consensus 136 ~~~~v~~~l~~~ 147 (177)
.++.+.+.+.++
T Consensus 22 aaeayakriaea 33 (37)
T 2i9o_A 22 AAEAYAKRIAEA 33 (37)
T ss_dssp SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555555543
No 43
>4aff_A Nitrogen regulatory protein P-II; signaling protein; HET: ATP FLC; 1.05A {Synechococcus elongatus} SCOP: d.58.5.1 PDB: 2xun_A* 2xul_A* 2xzw_A* 2xbp_A* 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 3n5b_A* 1ul3_A
Probab=29.42 E-value=1.5e+02 Score=20.78 Aligned_cols=69 Identities=13% Similarity=0.179 Sum_probs=44.7
Q ss_pred CChHHHHHHHHHHhCCCCcee---EeecCCCC-c------------------eEEEEeccccHHHHHHHHHHHhHhhchh
Q 030414 97 GSEPLIQLNEILQRAPGVFGA---RFSGAGFR-G------------------CCLALVDADRAEEAASYVRSEYFELQPE 154 (177)
Q Consensus 97 S~pelD~lv~~a~~~~Ga~Ga---K~tGaG~G-G------------------~viaLv~~~~~~~v~~~l~~~y~~~~~~ 154 (177)
....+|.+.++..+ .|+.|. ...|-|-- | -+...|+++.++++++.+.+.-..-.|
T Consensus 9 rp~kl~~vk~AL~~-~G~~g~Tv~~V~G~G~q~g~~~~yrG~~~~~~~~pK~kieivV~d~~ve~vv~~I~~~a~Tg~~- 86 (116)
T 4aff_A 9 RPFKLDEVKIALVN-AGIVGMTVSEVRGFGRQKGQTERYRGSEYTVEFLQKLKLEIVVEDAQVDTVIDKIVAAARTGEN- 86 (116)
T ss_dssp CGGGHHHHHHHHHH-TTCCCCEEEEEEECCCCC------CCCSSCCCCEEEEEEEEEECGGGHHHHHHHHHHHHCCSST-
T ss_pred CHHHHHHHHHHHHH-CCCCeEEEEeeEeEcccCCCccccccceeeecccceEEEEEEEcHHHHHHHHHHHHHHhcCCCC-
Confidence 34567888887776 788665 44566532 3 256677888999999999887543211
Q ss_pred hhhhcCCCceEEEeecCCc
Q 030414 155 LASQLNADSAVLICKPGDC 173 (177)
Q Consensus 155 ~~~~~g~~~~~~~~~~~~G 173 (177)
| +-.+|++...+-
T Consensus 87 -----G-DGkIFV~~Ve~~ 99 (116)
T 4aff_A 87 -----G-DGKIFVSPVDQT 99 (116)
T ss_dssp -----T-CEEEEEEECSCC
T ss_pred -----C-CeEEEEEEhHHe
Confidence 2 456777665443
No 44
>3dfe_A Putative PII-like signaling protein; YP_323533.1, structur genomics, joint center for structural genomics, JCSG; 2.35A {Anabaena variabilis atcc 29413} SCOP: d.58.5.0
Probab=26.87 E-value=80 Score=22.10 Aligned_cols=63 Identities=24% Similarity=0.401 Sum_probs=38.3
Q ss_pred ChHHHHHHHHHHhCCCCcee---EeecCC----C-Cc-----------eEEEEe-ccccHHHHHHHHHHHhHhhchhhhh
Q 030414 98 SEPLIQLNEILQRAPGVFGA---RFSGAG----F-RG-----------CCLALV-DADRAEEAASYVRSEYFELQPELAS 157 (177)
Q Consensus 98 ~pelD~lv~~a~~~~Ga~Ga---K~tGaG----~-GG-----------~viaLv-~~~~~~~v~~~l~~~y~~~~~~~~~ 157 (177)
...+|.+.++..+ .|+.|- ...|-| . |+ -+..++ +++.++.+++++.+.+..
T Consensus 15 p~kl~~V~~aL~~-~Gv~G~TV~~v~G~G~q~~~~~~~~~~~~~~~kvkieivv~~de~vd~vv~~I~~~~~t------- 86 (111)
T 3dfe_A 15 KVLLKKVAKIIEE-AGATGYTVVDTGGKGSRNVRSTGKPNTSDTDSNVKFEVLTENREMAEKIADQVAIKFFT------- 86 (111)
T ss_dssp GGGHHHHHHHHHH-HTCSCCEEEEEBC------------------CEEEEEEEESSHHHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHHHHH-CCCCcEEEEecEeecCCCCCcCceEEEeccCCceEEEEEECCHHHHHHHHHHHHHHhhC-------
Confidence 4567777777765 677553 334444 1 12 125667 578899999999877766
Q ss_pred hcCCCceEEEeec
Q 030414 158 QLNADSAVLICKP 170 (177)
Q Consensus 158 ~~g~~~~~~~~~~ 170 (177)
+..-.+|++..
T Consensus 87 --~~~G~ifVsdV 97 (111)
T 3dfe_A 87 --DYAGIIYICEA 97 (111)
T ss_dssp --TSCEEEEEEEE
T ss_pred --CCCEEEEEEEe
Confidence 44566676553
No 45
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=23.84 E-value=99 Score=18.06 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030414 53 RAEHYFTENRRVAKGLEAW 71 (177)
Q Consensus 53 R~~hvv~E~~Rv~~~~~aL 71 (177)
|-.|||.|+..+++|.+-|
T Consensus 13 rkerIv~eCnavrqALQdL 31 (40)
T 4e17_B 13 RRERIVAECNAVRQALQDL 31 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6678899999999887544
No 46
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=23.73 E-value=1.5e+02 Score=20.07 Aligned_cols=46 Identities=13% Similarity=0.132 Sum_probs=27.4
Q ss_pred hhhcccCCChHHHHHHHHHHhCCCCceeEeecCCCCceEEEEeccccHH
Q 030414 90 SIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAE 138 (177)
Q Consensus 90 lr~~~~vS~pelD~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~~~~~ 138 (177)
|.+.|+||-+.+-+.++...+ .|.+= +..| |..|+.++-...+...
T Consensus 49 La~~lgVSr~tVr~al~~L~~-~GlI~-~~~g-G~~G~~V~~~~~~~~~ 94 (102)
T 2b0l_A 49 IADRVGITRSVIVNALRKLES-AGVIE-SRSL-GMKGTYIKVLNNKFLI 94 (102)
T ss_dssp HHHHHTCCHHHHHHHHHHHHH-TTSEE-EEEC-SSSCEEEEECCHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHH-CCCEE-EEeC-CCCcEEEecCCHHHHH
Confidence 556689998777777777766 68742 3333 3236666554433333
No 47
>2qar_B Telsam domain; polymer, crystallization modules, sterIle alpha motif, hydro regulator; 2.40A {Escherichia coli}
Probab=21.35 E-value=1.4e+02 Score=20.26 Aligned_cols=40 Identities=10% Similarity=0.064 Sum_probs=28.2
Q ss_pred ccccCCCHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHH
Q 030414 29 IFFQTVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGL 68 (177)
Q Consensus 29 ~~Lr~v~~~~l~~~~~~l~~~~~~R~~hvv~E~~Rv~~~~ 68 (177)
+.|+.++.++|........+.++....++.+++.-..++.
T Consensus 46 k~Lc~Lt~edF~~~~p~~GdiL~~hL~~Lk~~~~~~~~~~ 85 (93)
T 2qar_B 46 KALLLLTKEDFRYRSPHSGDVLYELLQHILKQRDLEAEAA 85 (93)
T ss_dssp HHHTTCCHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHhhhCCcchHHHHHHHHHHHHhcHHHHHHH
Confidence 4589999999976555445777788888887776544433
No 48
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=20.55 E-value=36 Score=22.33 Aligned_cols=47 Identities=13% Similarity=0.175 Sum_probs=36.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhhhhcccCCChHHHHHHHHHHhCCCC
Q 030414 67 GLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGV 114 (177)
Q Consensus 67 ~~~aL~~~d~~~~G~lm~~sh~slr~~~~vS~pelD~lv~~a~~~~Ga 114 (177)
+..+|+...+..+|+|+..+...|...-++.-.-+++|.+...+ .|.
T Consensus 20 a~NcLkragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~L~~-~gl 66 (73)
T 1z3e_B 20 SYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEE-LGL 66 (73)
T ss_dssp HHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHHcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHHHHHH-hCC
Confidence 45667777899999999988888876666777778888877766 553
No 49
>2gff_A LSRG protein; dimeric alpha+beta barrel ferredoxin fold, sugar binding protein; 1.75A {Yersinia pestis} PDB: 3qmq_A
Probab=20.27 E-value=1.9e+02 Score=18.89 Aligned_cols=72 Identities=8% Similarity=-0.105 Sum_probs=38.8
Q ss_pred HHHHHHHhCCCCceeEeecCCCCceEEEEecc-ccHHHHHHHHHHHhHhhch-hhhhhcCCCceEEEeecCCce
Q 030414 103 QLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYVRSEYFELQP-ELASQLNADSAVLICKPGDCA 174 (177)
Q Consensus 103 ~lv~~a~~~~Ga~GaK~tGaG~GG~viaLv~~-~~~~~v~~~l~~~y~~~~~-~~~~~~g~~~~~~~~~~~~Ga 174 (177)
.+++.++..+|+++..+.=.--.+..+.++.. +..+.+...+...+.+.+- .+...+--.+.+.+..+..|.
T Consensus 24 ~~~~~~r~epG~l~~~~~~~~~~p~~~~~~E~w~d~~a~~~h~~s~~~~~~~~~~~~~l~~~~~i~~~~~~~~~ 97 (106)
T 2gff_A 24 ANHLGSIREAGNLRFDVLRDEHIPTRFYIYEAYTDEAAVAIHKTTPHYLQCVEQLAPLMTGPRKKTVFIGLMPG 97 (106)
T ss_dssp HHHHHHHTSTTEEEEEEEEESSCTTEEEEEEEESSHHHHHHHTTSHHHHHHHHHHGGGBSSCCEEEEEEEEECC
T ss_pred HHHHHHhCCCCcEEEEEEEcCCCCCEEEEEEEECCHHHHHHHhcCHHHHHHHHHHHHHhcCCcEEEEEeecCCC
Confidence 45555566789988866543322344555544 4566666666554444331 222223335677776655443
Done!