RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 030414
(177 letters)
>gnl|CDD|215466 PLN02865, PLN02865, galactokinase.
Length = 423
Score = 251 bits (642), Expect = 4e-83
Identities = 107/144 (74%), Positives = 122/144 (84%)
Query: 34 VEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYN 93
VE EVYEAHK +LE LA+RAEHYF+EN RV KG+EAW SGN ++FGKLISASGLSSI N
Sbjct: 280 VEPEVYEAHKCKLEAVLARRAEHYFSENMRVIKGVEAWASGNLEEFGKLISASGLSSIEN 339
Query: 94 YECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQP 153
YECG EPLIQL EIL +APGV+GARFSGAGFRGCC+A VDA+ AEEAAS+VR EY + QP
Sbjct: 340 YECGCEPLIQLYEILLKAPGVYGARFSGAGFRGCCVAFVDAEMAEEAASFVRDEYEKAQP 399
Query: 154 ELASQLNADSAVLICKPGDCARVI 177
ELAS +N D VLIC+ GDCARV+
Sbjct: 400 ELASNINGDKPVLICEAGDCARVL 423
>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and
metabolism].
Length = 390
Score = 103 bits (260), Expect = 9e-27
Identities = 53/146 (36%), Positives = 76/146 (52%), Gaps = 9/146 (6%)
Query: 34 VEEEVYEAHKNELE--PTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSI 91
V +E + A + E+E P +A+RA H TEN+RV + +A +SG+ +FG+L++ S S
Sbjct: 251 VTDEEFAALQAEIEVDPKIARRARHVVTENQRVLEAAKALRSGDLTEFGELMNESHESLR 310
Query: 92 YNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFEL 151
+YE L L EI A G +GAR +GAGF GC +ALV D E A V EY ++
Sbjct: 311 DDYEVTCPELDTLVEIALAAGGAYGARMTGAGFGGCVIALVPNDDVEAVAEAVAEEYEKV 370
Query: 152 QPELASQLNADSAVLICKPGDCARVI 177
A A + + A V
Sbjct: 371 TGLKA-------AFYVVEASQGAGVC 389
>gnl|CDD|235407 PRK05322, PRK05322, galactokinase; Provisional.
Length = 387
Score = 86.5 bits (215), Expect = 2e-20
Identities = 45/118 (38%), Positives = 67/118 (56%), Gaps = 1/118 (0%)
Query: 34 VEEEVYEAHKNELE-PTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIY 92
+ EE ++ + ++ TL KRA H TEN+R K ++A K+G+ + FG+L++AS +S
Sbjct: 250 LTEEEFDEYSYLIKDETLLKRARHAVTENQRTLKAVKALKAGDLEKFGRLMNASHVSLRD 309
Query: 93 NYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFE 150
+YE L L E + GV GAR +GAGF GC +A+V D+ E V Y E
Sbjct: 310 DYEVTGLELDTLVEAAWKQEGVLGARMTGAGFGGCAIAIVKKDKVEAFKENVGKAYEE 367
>gnl|CDD|232841 TIGR00131, gal_kin, galactokinase. Galactokinase is a member of
the GHMP kinases (Galactokinase, Homoserine kinase,
Mevalonate kinase, Phosphomevalonate kinase) and shares
with them an amino-terminal domain probably related to
ATP binding.The galactokinases found by This model are
divided into two sets. Prokaryotic forms are generally
shorter. The eukaryotic forms are longer because of
additional central regions and in some cases are known
to be bifunctional, with regulatory activities that are
independent of galactokinase activity [Energy
metabolism, Sugars].
Length = 386
Score = 85.3 bits (211), Expect = 5e-20
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 5/141 (3%)
Query: 31 FQTVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSS 90
F Y A ++ P + +RA+H +EN RV K ++A K + + FG L++ S S
Sbjct: 247 FMNEYFARYIARLTKMLPLVEERAKHVVSENLRVLKAVKAMKDNDFKQFGALMNESHASC 306
Query: 91 IYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFE 150
+YEC + +L G G+R +GAGF GC + LV + ++ V +Y +
Sbjct: 307 DDDYECTCPEIDELVCSAALVNGSGGSRMTGAGFGGCTVHLVPNENVDKVRQAVADKYPK 366
Query: 151 LQPELASQLNADSAVLICKPG 171
+ L V++ KPG
Sbjct: 367 K-----TGLELTFYVIVSKPG 382
>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional.
Length = 351
Score = 78.1 bits (193), Expect = 1e-17
Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 37 EVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC 96
EV E ++L P L KRA + EN RV K +A K G+ + G+L++ S NYE
Sbjct: 218 EVTEEDLSKLPPLLRKRAGYVLRENERVLKVRDALKEGDIETLGELLTESHWDLADNYEV 277
Query: 97 GSEPLIQLNEILQRAP--GVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 148
E +L+ ++ A G +GAR +GAGF G +ALVD + E + EY
Sbjct: 278 SCE---ELDFFVEFALELGAYGARLTGAGFGGSAIALVDKGKFESIGEELLEEY 328
>gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional.
Length = 363
Score = 69.9 bits (171), Expect = 1e-14
Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 47 EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNE 106
+P A+RA H TEN+RV A + G+L++AS S ++E +E + + +
Sbjct: 240 DPIDARRARHVLTENQRVLDFAAALADSDFTAAGQLLTASHASMRDDFEITTERIDLIAD 299
Query: 107 ILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSE 147
RA G GAR +G GF GC +ALV ADRAE+ A VR
Sbjct: 300 SAVRA-GALGARMTGGGFGGCVIALVPADRAEDVADTVRRA 339
>gnl|CDD|179937 PRK05101, PRK05101, galactokinase; Provisional.
Length = 382
Score = 69.6 bits (171), Expect = 2e-14
Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 8/145 (5%)
Query: 34 VEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYN 93
V E + A EL+P +AKRA H TEN R + A +G+ + G+L++ S S +
Sbjct: 245 VTLEQFNAVAAELDPVVAKRARHVITENARTLEAASALAAGDLKRMGELMAESHASMRDD 304
Query: 94 YECGSEPLIQLNEILQRAPGVF-GARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQ 152
+E + L EI++ G G R +G GF GC +ALV + E V +Y
Sbjct: 305 FEITVPQIDTLVEIVKAVIGDQGGVRMTGGGFGGCIVALVPEELVEAVRQAVAEQYEA-- 362
Query: 153 PELASQLNADSAVLICKPGDCARVI 177
+ L V CK A
Sbjct: 363 ---KTGLKETFYV--CKASQGAGQC 382
>gnl|CDD|215285 PLN02521, PLN02521, galactokinase.
Length = 497
Score = 55.5 bits (134), Expect = 2e-09
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 50 LAKRAEHYFTENRRVAKGLEAWKSGNS-----QDFGKLISASGLSSIYNYECGSEPLIQL 104
L +RA H ++E +RV + S S + G L++ S S YEC L +L
Sbjct: 361 LHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMNESHYSCSVLYECSCPELEEL 420
Query: 105 NEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYF 149
++ R G GAR +GAG+ GC +ALV + ++ +++
Sbjct: 421 VKVC-RDNGALGARLTGAGWGGCAVALVKEAIVPQFILALKEKFY 464
>gnl|CDD|219894 pfam08544, GHMP_kinases_C, GHMP kinases C terminal. This family
includes homoserine kinases, galactokinases and
mevalonate kinases.
Length = 86
Score = 38.6 bits (90), Expect = 1e-04
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 68 LEAWKSGNSQDFGKLISASGLSSIYNYECGSEP--LIQLNEILQRAPGVFGARFSGAGFR 125
LEA + G+ + G+L++ + LS G L +L E L+ G GA+ SG+G
Sbjct: 2 LEALREGDLELLGELLNENALSLEPLLYLGILSPELDELLEELREL-GALGAKLSGSGGG 60
Query: 126 GCCLALV-DADRAEEAASYVRSEY 148
AL D + AEE A +R Y
Sbjct: 61 PTVFALFKDEEDAEEVAEALREAY 84
>gnl|CDD|179677 PRK03926, PRK03926, mevalonate kinase; Provisional.
Length = 302
Score = 34.6 bits (80), Expect = 0.014
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 110 RAPGVFGARFSGAGFRGCCLALVDADRAEEAA 141
R G GA+ +GAG GC +AL ++ E A
Sbjct: 245 RTAGALGAKITGAGGGGCMVALAAPEKQSEVA 276
>gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism].
Length = 307
Score = 34.2 bits (79), Expect = 0.020
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 28/156 (17%)
Query: 1 MDPRLCNGEYFHLILFSSFVILQLIMI--LIFF---------QTVEEEVYEAHKNELEPT 49
+D Y L+ F + + I L T E A E EP
Sbjct: 143 IDIATIT--YGGLVAFKKGFDFEKLEIELLGTLVIGDTGVPGSTKELVAGVAKLLEEEPE 200
Query: 50 LAKRAEHYFTENRRVAKGLE-AWKSGNSQDFGKLIS-ASGLSS---IYNYECGSEPLIQL 104
+ + + + E A ++G+ ++ G+L++ GL + E L +L
Sbjct: 201 VI---DPILDAIGELVQEAEAALQTGDFEELGELMNINQGLLKALGVSTPE-----LDEL 252
Query: 105 NEILQRAPGVFGARFSGAGFRGCCLALV-DADRAEE 139
E + G GA+ +GAG GC +AL + + AE
Sbjct: 253 VEAARSL-GALGAKLTGAGGGGCIIALAKNEEIAET 287
>gnl|CDD|240347 PTZ00290, PTZ00290, galactokinase; Provisional.
Length = 468
Score = 32.1 bits (73), Expect = 0.13
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 98 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 148
+ L ++E++ GV G R G GF GC + L+ + + ++VR ++
Sbjct: 384 TPELDFIHELINEEKGVAGGRMMGGGFGGCIILLLKKNAVDRVVAHVREKF 434
>gnl|CDD|220688 pfam10317, 7TM_GPCR_Srd, Serpentine type 7TM GPCR chemoreceptor
Srd. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of
proteins which are of the serpentine type. Srd is part
of the larger Str superfamily of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 293
Score = 29.8 bits (68), Expect = 0.73
Identities = 8/26 (30%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 9 EYFHLILFSSFVILQLIMI-LIFFQT 33
++ I F +IL L+++ LI F++
Sbjct: 2 SIYYPIFFILGLILNLLLLYLIIFKS 27
>gnl|CDD|235558 PRK05683, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 676
Score = 29.3 bits (66), Expect = 1.1
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 116 GARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSA 164
++ SGAG+ G L D R + + + + Q A+ LN+D++
Sbjct: 44 ASQQSGAGYIGTGTTLADVRR-------IYNSFLDTQLRTATSLNSDAS 85
>gnl|CDD|240351 PTZ00298, PTZ00298, mevalonate kinase; Provisional.
Length = 328
Score = 29.1 bits (65), Expect = 1.3
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Query: 38 VYEAHK-NELEPTLAKR-AEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS-GLSSIYNY 94
V + K E +PT R E+Y N V++ EA + GN G+L++A+ L
Sbjct: 202 VGDVRKLKENQPTWFNRLLENY---NACVSEAKEALQKGNLFRVGELMNANHDLCQKLTV 258
Query: 95 ECGSEPLIQLNEILQ--RAPGVFGARFSGAGFRGCCLALVDADRAEEAA 141
C +L+ I+Q R G GA+ SG G G +AL A + A
Sbjct: 259 SCR-----ELDSIVQTCRTYGALGAKMSGTGRGGLVVALA-ASEDQRDA 301
>gnl|CDD|227132 COG4795, PulJ, Type II secretory pathway, component PulJ
[Intracellular trafficking and secretion].
Length = 194
Score = 28.5 bits (64), Expect = 1.5
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 82 LISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRG 126
L++ L S SE +Q LQRA + AGFR
Sbjct: 26 LLAFRFLDSAQRSNQASEARLQREAELQRAMALLERDLRRAGFRR 70
>gnl|CDD|216430 pfam01315, Ald_Xan_dh_C, Aldehyde oxidase and xanthine
dehydrogenase, a/b hammerhead domain.
Length = 111
Score = 27.2 bits (61), Expect = 2.8
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 124 FRGCCLALVDAD---RAEEAASYVRSEYFELQ 152
F G +A V AD A +AA V+ EY EL
Sbjct: 80 FVGQPIAAVVADDEETARDAAELVKVEYEELP 111
>gnl|CDD|236221 PRK08291, PRK08291, ectoine utilization protein EutC; Validated.
Length = 330
Score = 28.0 bits (63), Expect = 3.0
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 42 HKNELEPTLAKRAEHYF 58
HKNE+ P + A+ Y
Sbjct: 232 HKNEIAPAVFAAADLYV 248
>gnl|CDD|237765 PRK14608, PRK14608, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 290
Score = 27.5 bits (62), Expect = 4.0
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 106 EILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAA 141
L+ PG AR SG+G C AL + A EAA
Sbjct: 238 AALRAQPGALLARMSGSG--ATCFALFADEAAAEAA 271
>gnl|CDD|237823 PRK14823, PRK14823, putative deoxyribonucleoside-triphosphatase;
Provisional.
Length = 191
Score = 27.0 bits (60), Expect = 4.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 82 LISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSG 121
L+ A + Y Y+C ++ E L APGV+ AR++G
Sbjct: 50 LLKAEYVYKKYGYDCFADDTGLEVEALNGAPGVYSARYAG 89
>gnl|CDD|203608 pfam07298, NnrU, NnrU protein. This family consists of several
plant and bacterial NnrU proteins. NnrU is thought to be
involved in the reduction of nitric oxide. The exact
function of NnrU is unclear. It is thought however that
NnrU and perhaps NnrT are required for expression of
both nirK and nor.
Length = 184
Score = 26.3 bits (59), Expect = 8.6
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 5 LCNGEYFHLILFSSFVILQLI-MILI 29
L NG+ +ILF F+ L+ +ILI
Sbjct: 114 LANGDLASVILFGGFLAWALVGIILI 139
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.407
Gapped
Lambda K H
0.267 0.0806 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,996,981
Number of extensions: 815113
Number of successful extensions: 957
Number of sequences better than 10.0: 1
Number of HSP's gapped: 950
Number of HSP's successfully gapped: 30
Length of query: 177
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 86
Effective length of database: 6,901,388
Effective search space: 593519368
Effective search space used: 593519368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.2 bits)