RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 030414
(177 letters)
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET:
GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Length = 399
Score = 142 bits (361), Expect = 1e-41
Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 11/144 (7%)
Query: 34 VEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYN 93
V+ E EA ++ + +RA H E RR A+ A + G+ + FG+L+ S S +
Sbjct: 265 VQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDD 324
Query: 94 YECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQP 153
YE L QL E PGV+G+R +G GF GC + L++A A A +++ Y
Sbjct: 325 YEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHY----- 379
Query: 154 ELASQLNADSAVLICKPGDCARVI 177
+ + + D A+V+
Sbjct: 380 ------GGTATFYLSQAADGAKVL 397
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA;
2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Length = 419
Score = 141 bits (357), Expect = 6e-41
Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 8/145 (5%)
Query: 34 VEEEVYEAHKNEL-EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIY 92
+ E ++A+ + + + TL KRA H EN R +A+ +GN FG+L++AS S
Sbjct: 279 LSNEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHASLKD 338
Query: 93 NYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQ 152
+YE L L E Q+ GV GAR +GAGF GC +ALV D V Y E
Sbjct: 339 DYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYEE-- 396
Query: 153 PELASQLNADSAVLICKPGDCARVI 177
+ ++ + + G + +
Sbjct: 397 -----VVGYPASFYVAQIGSGSTKL 416
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national
project protein structural and functional analyses;
1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A*
1s4e_A*
Length = 350
Score = 138 bits (349), Expect = 3e-40
Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 8/141 (5%)
Query: 36 EEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYE 95
+EV E ++L P K + EN RV + +A K GN ++ GK+++ + NYE
Sbjct: 218 KEVREGELSKLPPLHRKFFGYIVRENARVLEVRDALKEGNVEEVGKILTTAHWDLAKNYE 277
Query: 96 CGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPEL 155
+ L E G +GAR +GAGF G +ALVD + AE + EY + P
Sbjct: 278 VSCKELDFFVERA-LKLGAYGARLTGAGFGGSAIALVDKEDAETIGEEILREYLKRFPWK 336
Query: 156 ASQLNADSAVLICKPGDCARV 176
A I +P D +
Sbjct: 337 AR-------HFIVEPSDGVGI 350
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET:
NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Length = 478
Score = 100 bits (250), Expect = 2e-25
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 6/146 (4%)
Query: 35 EEEVYEAHKNELEPTLAKRAEHYFTENRRV---AKGLEAWKSGNSQDFGKLISASGLSSI 91
+ + ++ L L +RA+H ++E RV K E Q G+L++ S +S
Sbjct: 333 TQILSPNTQDVLIFKLYQRAKHVYSEAARVLQFKKICEEAPENMVQLLGELMNQSHMSCR 392
Query: 92 YNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFEL 151
YEC L QL +I R G G+R +GAG+ GC +++V AD+ + V Y++
Sbjct: 393 DMYECSCPELDQLVDIC-RKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAYYQR 451
Query: 152 QPELASQLNADSAVLICKPGDCARVI 177
+ ++ KPG A V+
Sbjct: 452 SDGSLAPEKQ--SLFATKPGGGALVL 475
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription
regulation, transcription; HET: GLA ATP; 2.10A
{Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Length = 520
Score = 87.9 bits (217), Expect = 6e-21
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 11/148 (7%)
Query: 40 EAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNS-------QDFGKLISASGLSSIY 92
L +RA+H ++E+ RV K L+ S DFG+L++ S S
Sbjct: 372 TFPVRFQVLKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDK 431
Query: 93 NYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA---DRAEEAASYVRSEYF 149
YEC Q+ I A G FG+R +GAG+ GC + LV + E+ + +++
Sbjct: 432 LYECSCIETNQICSIA-LANGSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKALIEKFY 490
Query: 150 ELQPELASQLNADSAVLICKPGDCARVI 177
++ + A+++ KP +
Sbjct: 491 NVRYPDLTDEELKDAIIVSKPALGTCLY 518
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop,
beta-alpha-beta, transferase; 2.40A {Methanocaldococcus
jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Length = 317
Score = 76.2 bits (188), Expect = 3e-17
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 52 KRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS--GLSSIYNYECGSEPLIQLNEILQ 109
+ + F E +V EA K N +DFGKL++ + L + L ++ +I
Sbjct: 216 ENKDEIFKEIDKVID--EALKIKNKEDFGKLMTKNHELLKK---LNISTPKLDRIVDIGN 270
Query: 110 RAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFE 150
FGA+ +GAG GC + LV+ ++ +E + E
Sbjct: 271 --RFGFGAKLTGAGGGGCVIILVNEEKEKELLKELNKEDVR 309
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6;
2.50A {Streptococcus pneumoniae}
Length = 292
Score = 61.6 bits (150), Expect = 5e-12
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 63 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGA 122
+ A +++ G+++S + + S L E + G GA+ SG
Sbjct: 199 LTQQAEIAISQKDAEGLGQILSQAH-LHLKEIGVSSLEADSLVETA-LSHGALGAKMSGG 256
Query: 123 GFRGCCLALV-DADRAEEAASYVRSEYFE 150
G GC +ALV + A+E A + +
Sbjct: 257 GLGGCIIALVTNLTHAQELAERLEEKGAV 285
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes
thetaiotaomicron, protein structure initiative II(PSI
II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Length = 357
Score = 60.7 bits (147), Expect = 1e-11
Identities = 16/120 (13%), Positives = 35/120 (29%), Gaps = 2/120 (1%)
Query: 35 EEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS-GLSSIYN 93
+ K E + A G+ +F +++
Sbjct: 210 SAAIINEQKKNTSEGNQTAIEAMHKIKQSAIDTKLALLKGDVGEFARILGEGWENKKKMA 269
Query: 94 YECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQP 153
+ + + ++ G + SGAG G + +V+ R EE + + + P
Sbjct: 270 GAITNPMIQEAFDVA-TGAGAMAGKVSGAGGGGFIMFVVEPTRKEEVVRALNNLNGFVMP 328
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite,
transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Length = 332
Score = 60.5 bits (147), Expect = 1e-11
Identities = 26/142 (18%), Positives = 54/142 (38%), Gaps = 13/142 (9%)
Query: 36 EEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYE 95
+ V + HK + + + Y V++ EA + G+ Q G+L++A+ +
Sbjct: 203 KVVNDVHKMKQQ-QPVQFKRLYDNYTHIVSQAREALQKGDLQRLGQLMNANH-DLCRQID 260
Query: 96 CGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYVRSEYFELQPE 154
L + + R G GA+ SG G G +AL + D+ + ++++ E
Sbjct: 261 VSCRELESIVQTC-RTYGALGAKLSGTGRGGIAVALAASSDQRDAIVKGLKAKCPE---- 315
Query: 155 LASQLNADSAVLICKPGDCARV 176
+P + +
Sbjct: 316 -----AKFIWRYTVQPSAASNL 332
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus
aureus}
Length = 308
Score = 59.7 bits (145), Expect = 2e-11
Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 16/152 (10%)
Query: 10 YFHLILFSSFVILQLIM------ILIFFQTVE----EEVYEAHKNELEPTLAKRAEHYFT 59
+ F L +++ V+ + V++ HK +P +H
Sbjct: 153 SGKPVWFQKGHAETLKTLSLDGYMVVIDTGVKGSTRQAVHDVHKLCEDPQYMSHVKH--- 209
Query: 60 ENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARF 119
+ V + + + + + + + + + + QL +I + G +
Sbjct: 210 IGKLVLRASDVIEHHKFEALADIFNECH-ADLKALTVSHDKIEQLMKIG-KENGAIAGKL 267
Query: 120 SGAGFRGCCLALV-DADRAEEAASYVRSEYFE 150
+GAG G L L D A+ V
Sbjct: 268 TGAGRGGSMLLLAKDLPTAKNIVKAVEKAGAA 299
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A
{Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB:
2r42_A* 2r3v_A
Length = 395
Score = 42.9 bits (100), Expect = 2e-05
Identities = 15/110 (13%), Positives = 30/110 (27%), Gaps = 3/110 (2%)
Query: 39 YEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGS 98
+ P L R + + A +L+ + + G
Sbjct: 254 LIKFPEIMAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQ-HHLNALGVGH 312
Query: 99 EPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 148
L QL ++ ++ +GAG GC + L+ +
Sbjct: 313 ASLDQLCQVTAAH--GLHSKLTGAGGGGCGITLLKPGLERAKVEAAKQAL 360
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC,
structural genomics, NEW YORK SGX research center for
structural genomics; HET: PGE; 2.10A {Listeria innocua}
Length = 365
Score = 41.9 bits (98), Expect = 4e-05
Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 8/95 (8%)
Query: 52 KRAEHYFTE-NRRVAKGLEAWKSGNSQDFGKLISA-----SGLSSIYNYECGSEPLIQLN 105
K +H+ T N + + ++A+ + + + I L + + L +L
Sbjct: 242 KNYQHFLTRNNEIMKQIIQAFHTKDEELLYSSIKENRRILQELGTKAGVNIETSLLKELA 301
Query: 106 EILQRAPGVFGARFSGAGFRGCCLALVDADRAEEA 140
+ + G + SG+G C +A E
Sbjct: 302 DSAENMGG--AGKSSGSGGGDCGIAFSKTKELAEK 334
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 4e-04
Identities = 26/141 (18%), Positives = 46/141 (32%), Gaps = 48/141 (34%)
Query: 26 MILIF---------FQTVEE--EVYEAHKNELEP-------TLAKRAEHYFTENRRVAKG 67
++ IF F EE ++Y+ + + TL++ + +G
Sbjct: 156 LVAIFGGQGNTDDYF---EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 68 L--EAWKSGNS----QDFGKLISA------SGLSSIYNYE--CGSEPLIQLNEILQRAPG 113
L W S +D+ L+S G+ + +Y ++L PG
Sbjct: 213 LNILEWLENPSNTPDKDY--LLSIPISCPLIGVIQLAHYVVTA---------KLLGFTPG 261
Query: 114 VFGARFSGAGFRGCCLALVDA 134
+ GA G LV A
Sbjct: 262 ELRSYLKGA--TGHSQGLVTA 280
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase;
HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB:
1k47_A* 3gon_A*
Length = 337
Score = 36.9 bits (85), Expect = 0.002
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 64 VAKGLEAWKSGNSQDFGKLIS-ASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGA 122
V +EA + G S+ + + AS L + + + L QL E Q V A+ SGA
Sbjct: 238 VVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAV--AKSSGA 295
Query: 123 GFRGCCLALVDADRAEEA 140
G C +AL ++ +
Sbjct: 296 GGGDCGIALSFDAQSTKT 313
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.33
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 77 QDFGKLISASGLSSIYNYECGSEPLIQLNEILQ 109
Q KL +S+ Y S P + + ++
Sbjct: 20 QALKKL-----QASLKLYADDSAPALAIKATME 47
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis
TOH structural genomics, PSI-2, protein structure
initiative; 1.70A {Bordetella pertussis}
Length = 313
Score = 26.5 bits (59), Expect = 5.7
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 39 YEAHKNELEPTLAKRAEHYFTENR 62
H EL+ +RA E R
Sbjct: 215 SLPHTRELDDEALRRARAVVVEWR 238
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG;
HET: MES; 2.25A {Pseudomonas aeruginosa}
Length = 266
Score = 26.0 bits (58), Expect = 6.7
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 117 ARFSGAGFRGCCLALVDADRAEEAAS 142
+ G G A+ D D + A
Sbjct: 181 MATNRHGLAGSFAAVRDTDLRAQLAR 206
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.407
Gapped
Lambda K H
0.267 0.0480 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,663,472
Number of extensions: 147262
Number of successful extensions: 377
Number of sequences better than 10.0: 1
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 30
Length of query: 177
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 90
Effective length of database: 4,272,666
Effective search space: 384539940
Effective search space used: 384539940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.2 bits)