RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 030414
(177 letters)
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis
[TaxId: 1358]}
Length = 183
Score = 103 bits (258), Expect = 6e-29
Identities = 45/143 (31%), Positives = 63/143 (44%), Gaps = 7/143 (4%)
Query: 35 EEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNY 94
EE + TL KRA H EN R +A+ +GN FG+L++AS S +Y
Sbjct: 48 NEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHASLKDDY 107
Query: 95 ECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPE 154
E L L E Q+ GV GAR +GAGF GC +ALV D V Y E
Sbjct: 108 EVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYEE---- 163
Query: 155 LASQLNADSAVLICKPGDCARVI 177
+ ++ + + G + +
Sbjct: 164 ---VVGYPASFYVAQIGSGSTKL 183
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 176
Score = 96.7 bits (240), Expect = 2e-26
Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 11/144 (7%)
Query: 34 VEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYN 93
V+ E EA ++ + +RA H E RR A+ A + G+ + FG+L+ S S +
Sbjct: 42 VQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDD 101
Query: 94 YECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQP 153
YE L QL E PGV+G+R +G GF GC + L++A A A +++ Y
Sbjct: 102 YEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHY----- 156
Query: 154 ELASQLNADSAVLICKPGDCARVI 177
+ + + D A+V+
Sbjct: 157 ------GGTATFYLSQAADGAKVL 174
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 171
Score = 91.3 bits (226), Expect = 3e-24
Identities = 40/146 (27%), Positives = 63/146 (43%), Gaps = 8/146 (5%)
Query: 29 IFFQTVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGL 88
I + +EV E +L P K + EN RV + +A K G+ + GK+++ +
Sbjct: 33 ILGKESSKEVTEKDLGKLPPLHRKFFSYIVRENARVLEVRDALKEGDIEKVGKILTTAHW 92
Query: 89 SSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 148
NY E L + G +GAR +GAGF G +ALVD D+A+ + EY
Sbjct: 93 DLAENYRVSCEELDFFVKKA-MELGAYGARLTGAGFGGSAIALVDKDKAKTIGDAILREY 151
Query: 149 FELQPELASQLNADSAVLICKPGDCA 174
+ + + + KP D
Sbjct: 152 LA-------KFSWKAKYFVVKPSDGV 170
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 137
Score = 58.8 bits (142), Expect = 2e-12
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 52 KRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRA 111
+ + F E +V EA K N +DFGKL++ + + + L ++ +I R
Sbjct: 36 ENKDEIFKEIDKVID--EALKIKNKEDFGKLMTKNH-ELLKKLNISTPKLDRIVDIGNRF 92
Query: 112 PGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFE 150
FGA+ +GAG GC + LV+ ++ +E + E
Sbjct: 93 --GFGAKLTGAGGGGCVIILVNEEKEKELLKELNKEDVR 129
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 169
Score = 47.3 bits (112), Expect = 7e-08
Identities = 17/113 (15%), Positives = 32/113 (28%), Gaps = 5/113 (4%)
Query: 37 EVYEAHKNELEPTLAKRAEHYFTENRRVAKGL-EAWKSGNSQDFGKLISASGLSSIYNYE 95
+ P L + E RV + A +L+ + +
Sbjct: 27 SRLIKFPEIMAPLL-TSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQ-HHLNALG 84
Query: 96 CGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 148
G L QL ++ ++ +GAG GC + L+ +
Sbjct: 85 VGHASLDQLCQVTAAH--GLHSKLTGAGGGGCGITLLKPGLERAKVEAAKQAL 135
>d1kmoa_ f.4.3.3 (A:) Outer membrane transporter FecA {Escherichia
coli [TaxId: 562]}
Length = 661
Score = 28.0 bits (60), Expect = 0.80
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 104 LNEILQRAPGVFGARFSGAGFRG 126
+ E+L R PGV +G G
Sbjct: 40 MREVLNRIPGVSAPENNGTGSHD 62
>d1bhga3 c.1.8.3 (A:329-632) beta-Glucuronidase, domain 3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 304
Score = 27.6 bits (60), Expect = 0.80
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 115 FGARFSGAGFRGCCLALVDADRAEEAASY-VRSEYFELQPE 154
F S G + R ++A++ +R Y+++ E
Sbjct: 264 FMTEQSPTRVLGNKKGIFTRQRQPKSAAFLLRERYWKIANE 304
>d1fepa_ f.4.3.3 (A:) Ferric enterobactin receptor FepA {Escherichia
coli [TaxId: 562]}
Length = 714
Score = 27.7 bits (59), Expect = 0.93
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 104 LNEILQRAPGVFGARFSGAGFRG 126
+++I++ PGV S +G RG
Sbjct: 35 VSKIIRTMPGVNLTGNSTSGQRG 57
>d2gufa1 f.4.3.3 (A:4-594) Outer membrane cobalamin transporter BtuB
{Escherichia coli [TaxId: 562]}
Length = 591
Score = 26.8 bits (57), Expect = 2.0
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 104 LNEILQRAPGVFGARFSGAG 123
+N++L+R PGV + G+G
Sbjct: 39 VNDVLRRLPGVDITQNGGSG 58
>d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
{Dog (Canis familiaris) [TaxId: 9615]}
Length = 337
Score = 25.1 bits (54), Expect = 6.0
Identities = 8/61 (13%), Positives = 23/61 (37%), Gaps = 9/61 (14%)
Query: 19 FVILQLIMILIFFQTVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQD 78
+ Q++ + ++ + V H R+ Y++E+ G ++ + +
Sbjct: 241 NALSQIVDLDGIWEGTRDFVACNHL---------RSYKYYSESILNPDGFASYPCASYRA 291
Query: 79 F 79
F
Sbjct: 292 F 292
>d2fc3a1 d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyrum pernix
[TaxId: 56636]}
Length = 124
Score = 23.6 bits (51), Expect = 9.6
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 121 GAGFRGCCLALVDADRAEEAASYVRSEYFELQ 152
G +A+++ AE + + EL+
Sbjct: 88 GIEVAAASVAIIEPGDAETLVREIVEKVKELR 119
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.407
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 637,339
Number of extensions: 25979
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 14
Length of query: 177
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 97
Effective length of database: 1,309,196
Effective search space: 126992012
Effective search space used: 126992012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.5 bits)