BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030415
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
Length = 101
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 58/87 (66%)
Query: 40 TWCVARSDASNQALQTALDYACGTGADCTPIQPNGLCYLPNTIQAHASYAFNSYFQRKGM 99
+WCV + S+ L ++YAC G DC PIQP G C+ PNT++AHA+Y N Y+Q G
Sbjct: 12 SWCVPKPGVSDDQLTGNINYACSQGIDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAGR 71
Query: 100 APGSCDFSGTATIAKTDPSYGSCMYPS 126
+CDFS TAT+ T+PSYG+C +PS
Sbjct: 72 NSWNCDFSQTATLTNTNPSYGACNFPS 98
>pdb|1G9K|A Chain A, Crystal Structure Of A Psychrophilic Alkaline Protease
From Pseudomonas Tac Ii 18
pdb|1O0Q|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallized With 1 Mm Edta
pdb|1O0T|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallized With 5 Mm Edta (5
Days)
pdb|1OM6|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallized With 5mm Edta (2
Months)
pdb|1OM7|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Soaked In 85 Mm Edta
pdb|1OM8|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallyzed With 10 Mm Edta
pdb|1OMJ|A Chain A, Crystal Structure Of A Psychrophilic Alkaline Protease
From Pseudomonas Tac Ii 18
Length = 463
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Query: 20 NMIMLNVMAANVPVEGTGNSTWCV-ARSDASNQALQTALDYACG-TGADCTPIQPNGLCY 77
N I+ A+V GTG+ T+ A SD++ +A D+ G D T I G
Sbjct: 352 NDIIYGGGGADVLWGGTGSDTFVFGAVSDSTPKAADIIKDFQSGFDKIDLTAITKLGGLN 411
Query: 78 LPNTIQAHASYAFNSYFQRKGMAPGSCDFSG 108
+ HA A SY Q DFSG
Sbjct: 412 FVDAFTGHAGDAIVSYHQASNAGSLQVDFSG 442
>pdb|1H71|P Chain P, Psychrophilic Protease From Pseudoalteromonas 'tac Ii 18'
Length = 463
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Query: 20 NMIMLNVMAANVPVEGTGNSTWCV-ARSDASNQALQTALDYACG-TGADCTPIQPNGLCY 77
N I+ A+V GTG+ T+ A SD++ +A D+ G D T I G
Sbjct: 352 NDIIYGGGGADVLWGGTGSDTFVFGAVSDSTPKAADIIKDFQSGFDKIDLTAITKLGGLN 411
Query: 78 LPNTIQAHASYAFNSYFQRKGMAPGSCDFSG 108
+ HA A SY Q DFSG
Sbjct: 412 FVDAFTGHAGDAIVSYHQASNAGSLQVDFSG 442
>pdb|1NP3|A Chain A, Crystal Structure Of Class I Acetohydroxy Acid
Isomeroreductase From Pseudomonas Aeruginosa
pdb|1NP3|B Chain B, Crystal Structure Of Class I Acetohydroxy Acid
Isomeroreductase From Pseudomonas Aeruginosa
pdb|1NP3|C Chain C, Crystal Structure Of Class I Acetohydroxy Acid
Isomeroreductase From Pseudomonas Aeruginosa
pdb|1NP3|D Chain D, Crystal Structure Of Class I Acetohydroxy Acid
Isomeroreductase From Pseudomonas Aeruginosa
Length = 338
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 17/38 (44%)
Query: 33 VEGTGNSTWCVARSDASNQALQTALDYACGTGADCTPI 70
V+G G DAS A AL YACG G T I
Sbjct: 141 VKGGGIPDLIAIYQDASGNAKNVALSYACGVGGGRTGI 178
>pdb|1OHC|A Chain A, Structure Of The Proline Directed Phosphatase Cdc14
pdb|1OHD|A Chain A, Structure Of Cdc14 In Complex With Tungstate
Length = 348
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 106 FSGTATIAKTDPSYGSCMYPSSLRYVLFFPCFVKIKKVNQFDIFLLFGS 154
F T+ I D +YGSC + Y+ CF +KK Q+ FL F S
Sbjct: 119 FGETSYIPFRDAAYGSCNF-----YITLLDCFHAVKKAMQYG-FLNFNS 161
>pdb|1OHE|A Chain A, Structure Of Cdc14b Phosphatase With A Peptide Ligand
Length = 348
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 106 FSGTATIAKTDPSYGSCMYPSSLRYVLFFPCFVKIKKVNQFDIFLLFGS 154
F T+ I D +YGSC + Y+ CF +KK Q+ FL F S
Sbjct: 119 FGETSYIPFRDAAYGSCNF-----YITLLDCFHAVKKAMQYG-FLNFNS 161
>pdb|3SC7|X Chain X, First Crystal Structure Of An Endo-Inulinase, From
Aspergillus Ficuum: Structural Analysis And Comparison
With Other Gh32 Enzymes.
pdb|3RWK|X Chain X, First Crystal Structure Of An Endo-Inulinase, From
Aspergillus Ficuum: Structural Analysis And Comparison
With Other Gh32 Enzymes
Length = 516
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 14/118 (11%)
Query: 30 NVPVEGTGNSTWCVARSDASNQALQTALDYACGTGADCTPIQPNGLCYLPNTIQAHASYA 89
+PVEGT +TW V + A A G G +G + + + A +
Sbjct: 239 ELPVEGTEETTWVVMMTPAEGSP-------AGGNGVLAITGSFDGKSFTADPVDASTMWL 291
Query: 90 FNSYFQRKGMA----PGSCDFSGTATIAKTDPSYGSCMYPSSLRYVLFFPCFVKIKKV 143
N ++ P S G IA SYGS ++ + +L FP + +KKV
Sbjct: 292 DNGRDFDGALSWVNVPAS---DGRRIIAAVMNSYGSNPPTTTWKGMLSFPRTLSLKKV 346
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.135 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,651,289
Number of Sequences: 62578
Number of extensions: 174012
Number of successful extensions: 356
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 348
Number of HSP's gapped (non-prelim): 12
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)