Query 030417
Match_columns 177
No_of_seqs 31 out of 33
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 21:48:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030417.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030417hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsc_N PSAN, PSI-N, photosyste 100.0 1.1E-59 3.7E-64 379.9 -4.3 132 1-136 1-141 (170)
2 3lw5_N Photosystem I-N subunit 99.9 2E-26 7E-31 170.3 -3.8 50 87-136 1-56 (85)
3 3ux2_A MIP18 family protein FA 88.1 0.077 2.6E-06 40.8 -0.5 15 97-111 101-115 (130)
4 3a9f_A Cytochrome C; alpha hel 65.6 0.69 2.4E-05 32.9 -1.4 46 89-138 5-50 (92)
5 3oa8_A SOXA; cytochrome, sulfu 54.0 2.8 9.6E-05 34.3 0.1 16 61-76 2-17 (275)
6 3vrc_A Cytochrome C'; C-type c 51.8 2.4 8.2E-05 31.3 -0.6 19 114-132 109-127 (131)
7 1w5c_T Cytochrome C-550; photo 50.1 1.2 4.1E-05 32.1 -2.4 23 110-132 47-69 (163)
8 1mqv_A Cytochrome C'; four-hel 43.0 3.9 0.00013 29.3 -0.6 22 113-134 100-121 (125)
9 2ccy_A Cytochrome C; electron 42.9 4.3 0.00015 29.3 -0.4 21 113-133 105-125 (128)
10 2j8w_A Cytochrome C'; heme, ir 42.6 4 0.00014 29.3 -0.6 19 115-133 108-126 (129)
11 2ykz_A Cytochrome C'; electron 42.4 4.1 0.00014 29.2 -0.6 20 115-134 105-124 (127)
12 3de8_A Soluble cytochrome B562 42.2 4.1 0.00014 28.4 -0.6 20 113-132 85-104 (106)
13 1cpq_A Cytochrome C'; electron 41.1 4.4 0.00015 29.3 -0.6 20 115-134 107-126 (129)
14 1s05_A Cytochrome C-556, C556; 40.2 4.6 0.00016 29.3 -0.6 21 114-134 105-125 (129)
15 1gqa_A Cytochrome C'; electron 40.2 4.6 0.00016 29.2 -0.6 20 115-134 108-127 (130)
16 3cu4_A Cytochrome C family pro 36.5 3.5 0.00012 25.8 -1.5 19 114-132 4-22 (85)
17 2w9k_A Cytochrome C, cytochrom 33.3 4.4 0.00015 27.1 -1.6 25 109-133 8-32 (114)
18 3ph2_B Cytochrome C6; photosyn 32.8 3.8 0.00013 25.2 -1.8 17 115-131 4-20 (86)
19 2dii_A TFIIH basal transcripti 31.8 4.4 0.00015 28.1 -1.8 27 95-121 9-35 (61)
20 3dr0_A Cytochrome C6; photosyn 28.3 5 0.00017 24.8 -1.8 18 116-133 4-21 (93)
21 3o0r_C Nitric oxide reductase 28.1 23 0.00077 24.4 1.4 22 112-133 46-68 (146)
22 1c6r_A Cytochrome C6; electron 26.7 5.6 0.00019 24.8 -1.8 17 116-132 5-21 (89)
23 1gdv_A Cytochrome C6; RED ALGA 26.5 5 0.00017 24.6 -2.0 15 119-133 7-21 (85)
24 1w2l_A Cytochrome oxidase subu 25.8 8 0.00027 24.4 -1.2 21 113-133 4-25 (99)
25 1f1f_A Cytochrome C6; heme, pr 25.4 6.8 0.00023 24.3 -1.6 15 119-133 7-21 (89)
26 1cyi_A Cytochrome C6, cytochro 24.5 6.5 0.00022 24.6 -1.8 15 118-132 6-20 (90)
27 1wve_C 4-cresol dehydrogenase 24.4 8.2 0.00028 24.4 -1.4 19 115-133 4-22 (80)
28 1kx2_A Mono-heme C-type cytoch 23.1 10 0.00034 24.0 -1.2 13 120-132 8-20 (81)
29 1jdl_A C552, cytochrome C2, IS 21.5 14 0.00047 24.7 -0.8 17 116-133 6-22 (121)
30 3dmi_A Cytochrome C6; electron 21.5 8.1 0.00028 23.9 -1.8 13 119-131 7-19 (88)
31 2zon_G Cytochrome C551; nitrit 21.4 9.9 0.00034 23.8 -1.4 15 119-133 13-27 (87)
32 2ce0_A Cytochrome C6; chloropl 20.9 11 0.00038 24.1 -1.3 18 116-133 6-23 (105)
33 1cno_A Cytochrome C552; electr 20.8 12 0.00043 23.5 -1.1 14 118-132 7-20 (87)
34 3dp5_A OMCF, cytochrome C fami 20.8 13 0.00045 24.6 -1.0 21 113-133 17-37 (99)
35 2gc4_D Cytochrome C-L; electro 20.3 21 0.00071 25.1 -0.1 18 115-132 46-63 (147)
No 1
>2wsc_N PSAN, PSI-N, photosystem I-N subunit; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Phaseolus vulgaris} PDB: 2wse_N* 2wsf_N*
Probab=100.00 E-value=1.1e-59 Score=379.92 Aligned_cols=132 Identities=62% Similarity=0.936 Sum_probs=48.4
Q ss_pred CccccccceecceeeccCCCCcccccceeeccC---CcccccccceeeeccccccccccCCchhHHHHHHHHHHHHHhhh
Q 030417 1 MAAMNSSVLACNYAISGSAGSSELNAKIVSVST---PAVHGHKMPVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTAT 77 (177)
Q Consensus 1 MaamNSsVLacnyaisG~~g~seln~k~~sv~s---p~~~~~klPvIraqq~~~~~~~~~~~gRRaal~~LAa~l~~tAa 77 (177)
||+|||||||||||||| ++|||+|++|||| |+++|+|||+||+||+.. .+....++||++|++||++|+++|+
T Consensus 1 ma~mnssvlac~yaisg---~sel~~k~~s~~s~~~~~~~~~klp~~ka~~~~~-~~~~~~~~rRaAl~~LaA~l~~~aa 76 (170)
T 2wsc_N 1 MSAMNSTVLACNYARSG---CSDLNAKLTSMPSVASPQLSALKLPLIKAHQAKV-TESKSDQGRRSALVYLAATLFTAAA 76 (170)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccccchhhhhhhhcC---chhhhhhhccCcccccccccccccCcceeeeeec-ccccccchhHHHHHHHHHHHHHHhh
Confidence 89999999999999999 7999999999999 889999999999999874 4455668999999999999999998
Q ss_pred hccccccchhhHHHHHHHhhhhhhhhhhhhhcccccccchheeeeecccc------chhhhhhhh
Q 030417 78 AAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCK------KCHSSRMIW 136 (177)
Q Consensus 78 ~a~a~~A~AgviedyL~KSkaNKELNDKKRLaTs~ANfaRayTV~fGtCk------~c~~~~~i~ 136 (177)
++++++|||||++|||+|||+|||||||||||||+|||+|+||||||+|+ |||++.+..
T Consensus 77 ~~~~~sA~Agv~~d~L~kS~aNKeLNDKKRlATS~ANfaRa~TV~~GtCkFP~Nf~GCqdlAk~k 141 (170)
T 2wsc_N 77 AASNSSANAGVIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGSCKFPENFTGCQDLAKQK 141 (170)
T ss_dssp ---------CCCCSCSCSSCSCSSSCCCSSCCSSSSSSCSCTTCCCSCSSCCSCCSCSSSCCCTT
T ss_pred cccccccccchHHHHHHHhhhhhhhhhhHhhhhcccchhheeeeecccccCCccccchHHHHhcC
Confidence 88999999999999999999999999999999999999999999999999 999998754
No 2
>3lw5_N Photosystem I-N subunit, photosystem I reaction center subunit IX; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CLA PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_N*
Probab=99.90 E-value=2e-26 Score=170.28 Aligned_cols=50 Identities=70% Similarity=1.095 Sum_probs=47.7
Q ss_pred hhHHHHHHHhhhhhhhhhhhhhcccccccchheeeeecccc------chhhhhhhh
Q 030417 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCK------KCHSSRMIW 136 (177)
Q Consensus 87 gviedyL~KSkaNKELNDKKRLaTs~ANfaRayTV~fGtCk------~c~~~~~i~ 136 (177)
||++|||+||++|||||||||||||+|||+|+|||+||+|+ |||++.+..
T Consensus 1 gv~~dllaks~aNKeLnDkKRlaTS~ANfaRs~TV~~G~C~FP~Nf~GCq~~a~~~ 56 (85)
T 3lw5_N 1 GVIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGSCKFPENFTGCQDLAKQK 56 (85)
T ss_dssp CCCCSCSCSSCCCSTTCCCSSCCSSSSSSTTTSSCCCSCSSCCSCCSCSSSCCCTT
T ss_pred CcHHHHHHHhhhhhhhhhHHHhhhcccchhheeEeecccccCCccccchHHHHhcC
Confidence 68999999999999999999999999999999999999999 999998754
No 3
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A
Probab=88.08 E-value=0.077 Score=40.80 Aligned_cols=15 Identities=40% Similarity=0.733 Sum_probs=12.7
Q ss_pred hhhhhhhhhhhhccc
Q 030417 97 KANKELNDQKRLATS 111 (177)
Q Consensus 97 kaNKELNDKKRLaTs 111 (177)
.-||.||||+|.|..
T Consensus 101 ~vnKQl~DKERvaAA 115 (130)
T 3ux2_A 101 DINKQINDKERVAAA 115 (130)
T ss_dssp CHHHHHHCHHHHHHH
T ss_pred HHHHhhhhHHHHHHH
Confidence 479999999999654
No 4
>3a9f_A Cytochrome C; alpha helix, mono heme, electron transport; HET: HEC P33 PGE PG4; 1.30A {Chlorobaculum tepidum}
Probab=65.58 E-value=0.69 Score=32.86 Aligned_cols=46 Identities=24% Similarity=0.468 Sum_probs=25.9
Q ss_pred HHHHHHHhhhhhhhhhhhhhcccccccchheeeeeccccchhhhhhhhhc
Q 030417 89 IDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKKCHSSRMIWNW 138 (177)
Q Consensus 89 iedyL~KSkaNKELNDKKRLaTs~ANfaRayTV~fGtCk~c~~~~~i~~~ 138 (177)
+++||.|.-+-.+|- .++.+..+.....++...|-+||+...++.+
T Consensus 5 ~~~~~~~~~~~~~~p----~~~~~~~~~~g~~l~~~kC~~CHs~d~v~~~ 50 (92)
T 3a9f_A 5 LKEFLNKPAATSDVP----PAPAGFDFDAAKKLVDVRCNKCHTLDSVADL 50 (92)
T ss_dssp ----------CCSSC----CCCTTCCHHHHHHHHHHHSSSSSCSGGGHHH
T ss_pred HHHHHcCcchhccCC----CCccccChHhHHHHHHhHHHHhcCCcccccc
Confidence 456666655555443 2344456778888899999999999877664
No 5
>3oa8_A SOXA; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_A*
Probab=53.96 E-value=2.8 Score=34.29 Aligned_cols=16 Identities=38% Similarity=0.451 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhh
Q 030417 61 RRAAMALLAVTLFTTA 76 (177)
Q Consensus 61 RRaal~~LAa~l~~tA 76 (177)
||.+...|+++|.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~ 17 (275)
T 3oa8_A 2 RRFAAGCLALALLVLP 17 (275)
T ss_dssp ----------------
T ss_pred hhHHHhHHHHHHHHHH
Confidence 6667777777666544
No 6
>3vrc_A Cytochrome C'; C-type cytpchrome, electron transport; HET: HEC PG4; 1.00A {Thermochromatium tepidum} PDB: 1bbh_A*
Probab=51.79 E-value=2.4 Score=31.31 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=14.7
Q ss_pred ccchheeeeeccccchhhh
Q 030417 114 NFARAYTVQFGTCKKCHSS 132 (177)
Q Consensus 114 NfaRayTV~fGtCk~c~~~ 132 (177)
.+..++..--++|+.||+.
T Consensus 109 ~~~~a~~~vg~tCkaCH~~ 127 (131)
T 3vrc_A 109 AVKSAFADVGAACKACHQK 127 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666677899999985
No 7
>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1
Probab=50.06 E-value=1.2 Score=32.15 Aligned_cols=23 Identities=13% Similarity=0.342 Sum_probs=16.5
Q ss_pred ccccccchheeeeeccccchhhh
Q 030417 110 TSGANFARAYTVQFGTCKKCHSS 132 (177)
Q Consensus 110 Ts~ANfaRayTV~fGtCk~c~~~ 132 (177)
.+.+..+|-..+|...|-.||..
T Consensus 47 ~~~~~~~~G~~lf~~~Ca~CHg~ 69 (163)
T 1w5c_T 47 LTEKQYLEGKRLFQYACASCHVG 69 (163)
T ss_dssp CCHHHHHHHHHHHHHHTHHHHGG
T ss_pred CCHHHHHHHHHHHHHhhHHhCCC
Confidence 34455667777777889999964
No 8
>1mqv_A Cytochrome C'; four-helix bundle, electron transport; HET: HEM; 1.78A {Rhodopseudomonas palustris} SCOP: a.24.3.2 PDB: 1a7v_A*
Probab=43.03 E-value=3.9 Score=29.33 Aligned_cols=22 Identities=27% Similarity=0.529 Sum_probs=16.1
Q ss_pred cccchheeeeeccccchhhhhh
Q 030417 113 ANFARAYTVQFGTCKKCHSSRM 134 (177)
Q Consensus 113 ANfaRayTV~fGtCk~c~~~~~ 134 (177)
+.+..++..--++|+.||+.-+
T Consensus 100 ~~~~~a~~~v~~sCkaCH~~yR 121 (125)
T 1mqv_A 100 ASLKANIGGVLGNCKSCHDDFR 121 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHhHHHHHHHHHh
Confidence 3455667777799999998644
No 9
>2ccy_A Cytochrome C; electron transport (heme protein); HET: HEM; 1.67A {Phaeospirillum molischianum} SCOP: a.24.3.2
Probab=42.90 E-value=4.3 Score=29.32 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=17.1
Q ss_pred cccchheeeeeccccchhhhh
Q 030417 113 ANFARAYTVQFGTCKKCHSSR 133 (177)
Q Consensus 113 ANfaRayTV~fGtCk~c~~~~ 133 (177)
+.+..++..--++|+.||+.-
T Consensus 105 ~~~~~a~~~v~~~CkaCH~~y 125 (128)
T 2ccy_A 105 DALKAQAAATGKVCKACHEEF 125 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 556778888889999999864
No 10
>2j8w_A Cytochrome C'; heme, iron, transport, metal-binding, electron transfer, electron transport; HET: HEM; 1.29A {Rubrivivax gelatinosus} SCOP: a.24.3.2 PDB: 1jaf_A* 2j9b_A*
Probab=42.61 E-value=4 Score=29.33 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=14.7
Q ss_pred cchheeeeeccccchhhhh
Q 030417 115 FARAYTVQFGTCKKCHSSR 133 (177)
Q Consensus 115 faRayTV~fGtCk~c~~~~ 133 (177)
+..++..--++|+.||+.-
T Consensus 108 ~~~a~~~v~~sCkaCH~~y 126 (129)
T 2j8w_A 108 IKAAVGETGGACKGCHDKF 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556777779999999864
No 11
>2ykz_A Cytochrome C'; electron transport, haemoprotein, 4-helix bundle; HET: PCA HEC; 0.84A {Achromobacter xylosoxidans} PDB: 3zqv_A* 2xlm_A* 1e83_A* 1e84_A* 1e86_A* 1e85_A* 2yld_A* 2yli_A* 1cgo_A* 2xle_A* 2xm0_A* 2xlw_A* 2xld_A* 2xm4_A* 2xlo_A* 2yl0_A* 2yl1_A* 2ylg_A* 3zqy_A* 2xl6_A* ...
Probab=42.43 E-value=4.1 Score=29.24 Aligned_cols=20 Identities=25% Similarity=0.492 Sum_probs=15.1
Q ss_pred cchheeeeeccccchhhhhh
Q 030417 115 FARAYTVQFGTCKKCHSSRM 134 (177)
Q Consensus 115 faRayTV~fGtCk~c~~~~~ 134 (177)
+..++..--++|+.||+.-+
T Consensus 105 ~~~a~~~v~~sCkaCH~~yR 124 (127)
T 2ykz_A 105 LRAAFGDVGASCKACHDAYR 124 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 45566777799999998643
No 12
>3de8_A Soluble cytochrome B562; Cu-stabilized dimeric superstructure, electron transport, heme, iron, metal-binding, periplasm, transport; HET: HEM; 1.72A {Escherichia coli} SCOP: a.24.3.1 PDB: 2qla_A* 3de9_A* 3c62_A* 3c63_A* 2bc5_A* 3l1m_A* 1qq3_A* 1apc_A 1qpu_A* 256b_A* 3foo_A* 3fop_A* 3nmi_A* 3nmj_A* 3nmk_A* 1lm3_B* 1m6t_A 1yyj_A 1yyx_A 3hnk_A* ...
Probab=42.25 E-value=4.1 Score=28.37 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=15.8
Q ss_pred cccchheeeeeccccchhhh
Q 030417 113 ANFARAYTVQFGTCKKCHSS 132 (177)
Q Consensus 113 ANfaRayTV~fGtCk~c~~~ 132 (177)
+.++.++.--.++|+.||+.
T Consensus 85 ~~~k~a~~~v~~~Ck~CH~~ 104 (106)
T 3de8_A 85 KEAQAAAEQLKTTCNACHQK 104 (106)
T ss_dssp HHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34677777788999999984
No 13
>1cpq_A Cytochrome C'; electron transport; HET: HEM; 1.72A {Rhodobacter capsulatus} SCOP: a.24.3.2 PDB: 1eky_A 1nbb_A* 1rcp_A* 1cpr_A*
Probab=41.08 E-value=4.4 Score=29.30 Aligned_cols=20 Identities=40% Similarity=0.654 Sum_probs=14.6
Q ss_pred cchheeeeeccccchhhhhh
Q 030417 115 FARAYTVQFGTCKKCHSSRM 134 (177)
Q Consensus 115 faRayTV~fGtCk~c~~~~~ 134 (177)
+..++..--++|+.||+.-+
T Consensus 107 ~~~a~~~v~~~CkaCH~~yR 126 (129)
T 1cpq_A 107 FGAALQKLGGTCKACHDDYR 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHhHHHHHHHHHc
Confidence 34566667789999998643
No 14
>1s05_A Cytochrome C-556, C556; THis is A model obtained by -restrained modeling and minimization., electron transport; HET: HEM; NMR {Rhodopseudomonas palustris} SCOP: a.24.3.2
Probab=40.20 E-value=4.6 Score=29.35 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=15.5
Q ss_pred ccchheeeeeccccchhhhhh
Q 030417 114 NFARAYTVQFGTCKKCHSSRM 134 (177)
Q Consensus 114 NfaRayTV~fGtCk~c~~~~~ 134 (177)
.+..++..--++|+.||+.-+
T Consensus 105 ~~~~a~~~v~~~CkaCH~~yR 125 (129)
T 1s05_A 105 TLKAAMQPIGKACGNCHENFR 125 (129)
T ss_dssp HHHHHTTTTTHHHHHHHHHSC
T ss_pred HHHHHHHHHHhHHHHHHHHHh
Confidence 355666777789999998643
No 15
>1gqa_A Cytochrome C'; electron transport, heme; HET: HEC; 1.8A {Rhodobacter sphaeroides} SCOP: a.24.3.2
Probab=40.19 E-value=4.6 Score=29.21 Aligned_cols=20 Identities=40% Similarity=0.552 Sum_probs=14.5
Q ss_pred cchheeeeeccccchhhhhh
Q 030417 115 FARAYTVQFGTCKKCHSSRM 134 (177)
Q Consensus 115 faRayTV~fGtCk~c~~~~~ 134 (177)
+..++..--++|+.||+.-+
T Consensus 108 ~~~a~~~v~~sCkaCH~~yR 127 (130)
T 1gqa_A 108 LAAAVGKVGGTCKSCHDDFR 127 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHhHHHHHHHHHc
Confidence 34466666789999998643
No 16
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=36.46 E-value=3.5 Score=25.83 Aligned_cols=19 Identities=21% Similarity=0.301 Sum_probs=11.3
Q ss_pred ccchheeeeeccccchhhh
Q 030417 114 NFARAYTVQFGTCKKCHSS 132 (177)
Q Consensus 114 NfaRayTV~fGtCk~c~~~ 132 (177)
+.++-..+|...|..||..
T Consensus 4 ~~~~G~~ly~~~Ca~CHg~ 22 (85)
T 3cu4_A 4 SGAGGGELFATHCAGCHPQ 22 (85)
T ss_dssp ---CHHHHHHHHTTTTSGG
T ss_pred cHHHHHHHHHHHhHHhCCC
Confidence 3444445555689999975
No 17
>2w9k_A Cytochrome C, cytochrome C555; electron transport, intermembrane space, metal-binding, thioether bond, respiratory chain, trypanosome; HET: M3L HEC; 1.55A {Crithidia fasciculata} PDB: 2yk3_A* 4dy9_A*
Probab=33.27 E-value=4.4 Score=27.07 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=16.3
Q ss_pred cccccccchheeeeeccccchhhhh
Q 030417 109 ATSGANFARAYTVQFGTCKKCHSSR 133 (177)
Q Consensus 109 aTs~ANfaRayTV~fGtCk~c~~~~ 133 (177)
....++.+|-..++...|-.||...
T Consensus 8 ~~~~~~~~~G~~lf~~~C~~CH~~~ 32 (114)
T 2w9k_A 8 PLPPGDAARGEKLFKGRAAQCHTAN 32 (114)
T ss_dssp CCCCCCHHHHHHHHHHHTTTTCCCS
T ss_pred cCCCccHHHHHHHHHhhchhhCCCC
Confidence 3334455555566656799999875
No 18
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=32.77 E-value=3.8 Score=25.24 Aligned_cols=17 Identities=29% Similarity=0.606 Sum_probs=11.4
Q ss_pred cchheeeeeccccchhh
Q 030417 115 FARAYTVQFGTCKKCHS 131 (177)
Q Consensus 115 faRayTV~fGtCk~c~~ 131 (177)
.+|-..+|...|..||.
T Consensus 4 ~~~G~~l~~~~C~~CHg 20 (86)
T 3ph2_B 4 LATGAKVFSANCAACHA 20 (86)
T ss_dssp HHHHHHHHHHHTHHHHC
T ss_pred HHHHHHHHHHHhHHhCC
Confidence 34444555567999997
No 19
>2dii_A TFIIH basal transcription factor complex P62 subunit; BTF2-P62, general transcription factor IIH polypeptide 1, nuclear protein; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=31.83 E-value=4.4 Score=28.05 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=23.4
Q ss_pred Hhhhhhhhhhhhhhcccccccchheee
Q 030417 95 RSKANKELNDQKRLATSGANFARAYTV 121 (177)
Q Consensus 95 KSkaNKELNDKKRLaTs~ANfaRayTV 121 (177)
|-|+||||..|+||...+.+..+-|+.
T Consensus 9 k~k~n~ELe~k~rlL~eN~~L~qLyk~ 35 (61)
T 2dii_A 9 KRKANKELEEKNRMLQEDPVLFQLYKD 35 (61)
T ss_dssp CCCSCHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHhccHhHHHHHHHHHhCHHHHHHHHH
Confidence 568899999999999999998887764
No 20
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=28.27 E-value=5 Score=24.81 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=11.4
Q ss_pred chheeeeeccccchhhhh
Q 030417 116 ARAYTVQFGTCKKCHSSR 133 (177)
Q Consensus 116 aRayTV~fGtCk~c~~~~ 133 (177)
+|-..+|...|..||...
T Consensus 4 ~~G~~l~~~~C~~CHg~~ 21 (93)
T 3dr0_A 4 AAGAQVFAANCAACHAGG 21 (93)
T ss_dssp HHHHHHHHHHTHHHHGGG
T ss_pred HHHHHHHHHHhHHhcCCC
Confidence 333445555699999753
No 21
>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}
Probab=28.09 E-value=23 Score=24.42 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=13.9
Q ss_pred ccccchheeeee-ccccchhhhh
Q 030417 112 GANFARAYTVQF-GTCKKCHSSR 133 (177)
Q Consensus 112 ~ANfaRayTV~f-GtCk~c~~~~ 133 (177)
.+..+|-..+|. ..|..||...
T Consensus 46 ~~~~~~G~~l~~~~~C~~CH~~~ 68 (146)
T 3o0r_C 46 SAAVVRGKLVWEQNNCVGCHTLL 68 (146)
T ss_dssp CHHHHHHHHHHHHHTGGGTSEET
T ss_pred chHHHHHHHHHHhCCCcccCCCc
Confidence 334455555555 4699999763
No 22
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=26.71 E-value=5.6 Score=24.80 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=11.3
Q ss_pred chheeeeeccccchhhh
Q 030417 116 ARAYTVQFGTCKKCHSS 132 (177)
Q Consensus 116 aRayTV~fGtCk~c~~~ 132 (177)
+|-..+|...|..||..
T Consensus 5 ~~G~~l~~~~C~~CHg~ 21 (89)
T 1c6r_A 5 ALGKQTFEANCAACHAG 21 (89)
T ss_dssp HHHHHHHHHHTHHHHGG
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 34444555679999975
No 23
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=26.55 E-value=5 Score=24.59 Aligned_cols=15 Identities=27% Similarity=0.558 Sum_probs=10.2
Q ss_pred eeeeeccccchhhhh
Q 030417 119 YTVQFGTCKKCHSSR 133 (177)
Q Consensus 119 yTV~fGtCk~c~~~~ 133 (177)
..+|...|..||...
T Consensus 7 ~~l~~~~C~~CHg~~ 21 (85)
T 1gdv_A 7 EKVFSANCAACHAGG 21 (85)
T ss_dssp HHHHHHHTHHHHGGG
T ss_pred HHHHHHhhHhhCCCC
Confidence 344445799999754
No 24
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=25.77 E-value=8 Score=24.43 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=13.6
Q ss_pred cccchheeeeecc-ccchhhhh
Q 030417 113 ANFARAYTVQFGT-CKKCHSSR 133 (177)
Q Consensus 113 ANfaRayTV~fGt-Ck~c~~~~ 133 (177)
++.+|-..+|... |-.||...
T Consensus 4 ~~~~~G~~l~~~~~C~~CHg~~ 25 (99)
T 1w2l_A 4 PLAELGARLYREKACFSCHSID 25 (99)
T ss_dssp CHHHHHHHHHHHTSGGGTCCSS
T ss_pred ccHHHHHHHHhhCChhhcCCCC
Confidence 3444555556565 99999754
No 25
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=25.41 E-value=6.8 Score=24.29 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=10.4
Q ss_pred eeeeeccccchhhhh
Q 030417 119 YTVQFGTCKKCHSSR 133 (177)
Q Consensus 119 yTV~fGtCk~c~~~~ 133 (177)
..+|...|..||...
T Consensus 7 ~~l~~~~C~~CHg~~ 21 (89)
T 1f1f_A 7 ASVFSANCAACHMGG 21 (89)
T ss_dssp HHHHHHHTHHHHGGG
T ss_pred HHHHHHHhHHhCCCC
Confidence 344446799999765
No 26
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=24.49 E-value=6.5 Score=24.63 Aligned_cols=15 Identities=33% Similarity=0.674 Sum_probs=10.2
Q ss_pred heeeeeccccchhhh
Q 030417 118 AYTVQFGTCKKCHSS 132 (177)
Q Consensus 118 ayTV~fGtCk~c~~~ 132 (177)
-..+|...|..||..
T Consensus 6 G~~l~~~~C~~CHg~ 20 (90)
T 1cyi_A 6 GAQVFNGNCAACHMG 20 (90)
T ss_dssp HHHHHHHHTHHHHGG
T ss_pred HHHHHHHHHHHhCCC
Confidence 334445579999975
No 27
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=24.36 E-value=8.2 Score=24.40 Aligned_cols=19 Identities=16% Similarity=0.469 Sum_probs=12.4
Q ss_pred cchheeeeeccccchhhhh
Q 030417 115 FARAYTVQFGTCKKCHSSR 133 (177)
Q Consensus 115 faRayTV~fGtCk~c~~~~ 133 (177)
.+|-..+|...|..||...
T Consensus 4 ~~~G~~l~~~~C~~CHg~~ 22 (80)
T 1wve_C 4 WGSGKNLYDKVCGHCHKPE 22 (80)
T ss_dssp SSSHHHHHHHTTHHHHSTT
T ss_pred HHHHHHHHHHHHHHhCCCC
Confidence 3444455556899999753
No 28
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=23.07 E-value=10 Score=24.02 Aligned_cols=13 Identities=31% Similarity=0.682 Sum_probs=9.5
Q ss_pred eeeeccccchhhh
Q 030417 120 TVQFGTCKKCHSS 132 (177)
Q Consensus 120 TV~fGtCk~c~~~ 132 (177)
.+|...|..||..
T Consensus 8 ~ly~~~Ca~CHg~ 20 (81)
T 1kx2_A 8 AIYNKACTVCHSM 20 (81)
T ss_dssp HHHHHSTTSSTTT
T ss_pred HHHHHHHHHHcCC
Confidence 3444679999975
No 29
>1jdl_A C552, cytochrome C2, ISO-2; alpha helix, electron transport; HET: HEM; 1.70A {Rhodospirillum centenum} SCOP: a.3.1.1
Probab=21.52 E-value=14 Score=24.73 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=11.4
Q ss_pred chheeeeeccccchhhhh
Q 030417 116 ARAYTVQFGTCKKCHSSR 133 (177)
Q Consensus 116 aRayTV~fGtCk~c~~~~ 133 (177)
+|-..++ ..|..||...
T Consensus 6 ~~G~~lf-~~C~~CH~~~ 22 (121)
T 1jdl_A 6 AKGEAVF-KKCMACHRVG 22 (121)
T ss_dssp HHHHHHG-GGTTTTCCCS
T ss_pred HHHHHHH-hhhhhhCCCC
Confidence 3344444 5899999875
No 30
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=21.47 E-value=8.1 Score=23.89 Aligned_cols=13 Identities=23% Similarity=0.641 Sum_probs=9.1
Q ss_pred eeeeeccccchhh
Q 030417 119 YTVQFGTCKKCHS 131 (177)
Q Consensus 119 yTV~fGtCk~c~~ 131 (177)
..+|...|-.||.
T Consensus 7 ~~l~~~~C~~CHg 19 (88)
T 3dmi_A 7 EQIFNANCAACHA 19 (88)
T ss_dssp HHHHHHHTHHHHG
T ss_pred HHHHHHHHHHhCC
Confidence 3444456999997
No 31
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=21.41 E-value=9.9 Score=23.82 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=10.3
Q ss_pred eeeeeccccchhhhh
Q 030417 119 YTVQFGTCKKCHSSR 133 (177)
Q Consensus 119 yTV~fGtCk~c~~~~ 133 (177)
..+|-..|..||...
T Consensus 13 ~~l~~~~C~~CHg~~ 27 (87)
T 2zon_G 13 EKLYRSACVVCHASG 27 (87)
T ss_dssp HHHHHHTTHHHHTTT
T ss_pred HHHHHHHhHHHcCCC
Confidence 334445799999765
No 32
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*
Probab=20.89 E-value=11 Score=24.07 Aligned_cols=18 Identities=28% Similarity=0.560 Sum_probs=11.7
Q ss_pred chheeeeeccccchhhhh
Q 030417 116 ARAYTVQFGTCKKCHSSR 133 (177)
Q Consensus 116 aRayTV~fGtCk~c~~~~ 133 (177)
+|-..+|...|..||...
T Consensus 6 ~~G~~l~~~~Ca~CHg~~ 23 (105)
T 2ce0_A 6 QRGATLFNRACAACHDTG 23 (105)
T ss_dssp HHHHHHHHHHTTTTSGGG
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 344445556799999754
No 33
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=20.82 E-value=12 Score=23.51 Aligned_cols=14 Identities=21% Similarity=0.562 Sum_probs=9.6
Q ss_pred heeeeeccccchhhh
Q 030417 118 AYTVQFGTCKKCHSS 132 (177)
Q Consensus 118 ayTV~fGtCk~c~~~ 132 (177)
-..+|- .|..||..
T Consensus 7 G~~ly~-~C~~CHg~ 20 (87)
T 1cno_A 7 GKAKAA-VCAACHGQ 20 (87)
T ss_dssp HHHHGG-GTHHHHCT
T ss_pred HHHHHH-HHHhhcCC
Confidence 334445 89999965
No 34
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=20.78 E-value=13 Score=24.60 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=14.6
Q ss_pred cccchheeeeeccccchhhhh
Q 030417 113 ANFARAYTVQFGTCKKCHSSR 133 (177)
Q Consensus 113 ANfaRayTV~fGtCk~c~~~~ 133 (177)
+..++-..+|-..|..||...
T Consensus 17 ~~~~~G~~ly~~~Ca~CHg~~ 37 (99)
T 3dp5_A 17 VPNSGGGELFATHCAGCHPQG 37 (99)
T ss_dssp CCCCCHHHHHHHHTTTTSGGG
T ss_pred ccHHHHHHHHHHHHHHhCCCC
Confidence 344555566667899999864
No 35
>2gc4_D Cytochrome C-L; electron transfer, methylamine dehydrogenase, blue copper protein, oxidoreductase, electron transport; HET: TRQ HEM; 1.90A {Paracoccus denitrificans} SCOP: a.3.1.1 PDB: 2gc7_D* 2mta_C* 1mg2_D* 1mg3_D*
Probab=20.28 E-value=21 Score=25.10 Aligned_cols=18 Identities=28% Similarity=0.635 Sum_probs=12.0
Q ss_pred cchheeeeeccccchhhh
Q 030417 115 FARAYTVQFGTCKKCHSS 132 (177)
Q Consensus 115 faRayTV~fGtCk~c~~~ 132 (177)
.+|-..+|...|..||..
T Consensus 46 ~~~G~~l~~~~Ca~CHg~ 63 (147)
T 2gc4_D 46 LPEAEELYAGMCSGCHGH 63 (147)
T ss_dssp HHHHHHHHHHHTHHHHCT
T ss_pred HHHHHHHHHhhcHHhCCC
Confidence 344445555679999965
Done!