Query 030417
Match_columns 177
No_of_seqs 31 out of 33
Neff 1.9
Searched_HMMs 13730
Date Mon Mar 25 21:48:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030417.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030417hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1s05a_ a.24.3.2 (A:) Cytochro 65.2 0.26 1.9E-05 34.2 -2.0 22 112-133 103-124 (129)
2 d1mqva_ a.24.3.2 (A:) Cytochro 62.3 0.58 4.3E-05 32.0 -0.6 19 115-133 102-120 (123)
3 d2diia1 a.240.1.1 (A:8-55) TFI 60.2 0.33 2.4E-05 31.2 -2.0 25 95-119 2-26 (48)
4 d1bbha_ a.24.3.2 (A:) Cytochro 60.2 0.55 4E-05 32.5 -1.1 21 113-133 108-128 (131)
5 d2ccya_ a.24.3.2 (A:) Cytochro 58.6 0.3 2.2E-05 33.5 -2.7 21 112-132 103-123 (127)
6 d1e85a_ a.24.3.2 (A:) Cytochro 57.7 0.78 5.7E-05 31.5 -0.6 20 113-132 103-122 (125)
7 d1gqaa_ a.24.3.2 (A:) Cytochro 55.0 0.93 6.8E-05 31.4 -0.6 20 114-133 107-126 (130)
8 d1cpqa_ a.24.3.2 (A:) Cytochro 54.6 0.95 6.9E-05 31.1 -0.6 20 114-133 106-125 (129)
9 d2j8wa1 a.24.3.2 (A:1-128) Cyt 50.3 0.58 4.2E-05 32.3 -2.3 20 113-132 106-125 (128)
10 d3cx5d1 a.3.1.3 (D:62-260) Cyt 47.7 1.2 8.5E-05 34.0 -1.1 21 115-135 29-49 (199)
11 d1ppjd1 a.3.1.3 (D:1-195) Cyto 46.7 1.2 9E-05 33.5 -1.1 20 116-135 27-46 (195)
12 d3c2ca_ a.3.1.1 (A:) Cytochrom 35.2 3.9 0.00029 25.7 0.1 10 124-133 12-21 (112)
13 d1ctja_ a.3.1.1 (A:) Cytochrom 30.4 2.2 0.00016 26.0 -1.7 20 113-132 2-21 (89)
14 d1jdla_ a.3.1.1 (A:) Cytochrom 30.0 5.2 0.00038 26.8 0.0 12 123-134 10-21 (118)
15 d1ql3a_ a.3.1.1 (A:) Cytochrom 28.7 5.8 0.00042 26.1 0.1 10 124-133 11-20 (99)
16 d1c6sa_ a.3.1.1 (A:) Cytochrom 26.7 4.5 0.00033 24.4 -0.7 19 114-132 2-20 (87)
17 d1cxca_ a.3.1.1 (A:) Cytochrom 26.0 7.3 0.00053 24.9 0.2 10 124-133 13-22 (124)
18 d1cota_ a.3.1.1 (A:) Cytochrom 23.9 7.7 0.00056 25.4 -0.0 10 124-133 12-21 (121)
19 d1vyda_ a.3.1.1 (A:) Cytochrom 23.3 8.1 0.00059 25.5 -0.0 10 124-133 11-20 (116)
20 d1mz4a_ a.3.1.1 (A:) Cytochrom 21.7 3 0.00022 26.9 -2.5 17 115-131 26-42 (131)
21 d1gdva_ a.3.1.1 (A:) Cytochrom 21.4 3.5 0.00026 24.8 -2.0 17 115-131 3-19 (85)
22 d1qn2a_ a.3.1.1 (A:) Cytochrom 21.3 10 0.00075 25.0 0.2 10 124-133 12-21 (99)
23 d1nira1 a.3.1.2 (A:6-117) N-te 21.2 3.3 0.00024 27.4 -2.4 20 113-132 29-48 (112)
24 d1kb0a1 a.3.1.6 (A:579-675) Qu 20.8 4.6 0.00033 25.3 -1.6 21 112-132 12-32 (97)
No 1
>d1s05a_ a.24.3.2 (A:) Cytochrome c-556 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=65.16 E-value=0.26 Score=34.22 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=17.2
Q ss_pred ccccchheeeeeccccchhhhh
Q 030417 112 GANFARAYTVQFGTCKKCHSSR 133 (177)
Q Consensus 112 ~ANfaRayTV~fGtCk~c~~~~ 133 (177)
.+.+..++..-.++|+.||+.-
T Consensus 103 ~~~~~~a~~~vg~tCksCH~~f 124 (129)
T d1s05a_ 103 VDTLKAAMQPIGKACGNCHENF 124 (129)
T ss_dssp HHHHHHHTTTTTHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhHHHHHHHHH
Confidence 3456677888889999999864
No 2
>d1mqva_ a.24.3.2 (A:) Cytochrome c' {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=62.29 E-value=0.58 Score=32.00 Aligned_cols=19 Identities=26% Similarity=0.585 Sum_probs=13.5
Q ss_pred cchheeeeeccccchhhhh
Q 030417 115 FARAYTVQFGTCKKCHSSR 133 (177)
Q Consensus 115 faRayTV~fGtCk~c~~~~ 133 (177)
+..++..--++|+.||+.-
T Consensus 102 ~~~a~~~vg~tCksCH~~f 120 (123)
T d1mqva_ 102 LKANIGGVLGNCKSCHDDF 120 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555668999999864
No 3
>d2diia1 a.240.1.1 (A:8-55) TFIIH basal transcription factor complex p62 subunit, BTF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.22 E-value=0.33 Score=31.20 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=20.1
Q ss_pred Hhhhhhhhhhhhhhcccccccchhe
Q 030417 95 RSKANKELNDQKRLATSGANFARAY 119 (177)
Q Consensus 95 KSkaNKELNDKKRLaTs~ANfaRay 119 (177)
|.|+||||.+|-|+...+...---|
T Consensus 2 k~k~~keLeEKnr~L~enp~L~qLY 26 (48)
T d2diia1 2 KRKANKELEEKNRMLQEDPVLFQLY 26 (48)
T ss_dssp CCCSCHHHHHHHHHHHHCHHHHHHH
T ss_pred chhHHHHHHHHhhccccCHHHHHHH
Confidence 5789999999999988876654444
No 4
>d1bbha_ a.24.3.2 (A:) Cytochrome c' {Chromatium vinosum [TaxId: 1049]}
Probab=60.17 E-value=0.55 Score=32.47 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=16.0
Q ss_pred cccchheeeeeccccchhhhh
Q 030417 113 ANFARAYTVQFGTCKKCHSSR 133 (177)
Q Consensus 113 ANfaRayTV~fGtCk~c~~~~ 133 (177)
+.+..++..--++|+.||+.-
T Consensus 108 ~a~~~a~~~lg~tCksCH~~f 128 (131)
T d1bbha_ 108 EAVKTAFGDVGAACKSCHEKY 128 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346667777788999999853
No 5
>d2ccya_ a.24.3.2 (A:) Cytochrome c' {Rhodospirillum molischianum [TaxId: 1083]}
Probab=58.59 E-value=0.3 Score=33.51 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=17.5
Q ss_pred ccccchheeeeeccccchhhh
Q 030417 112 GANFARAYTVQFGTCKKCHSS 132 (177)
Q Consensus 112 ~ANfaRayTV~fGtCk~c~~~ 132 (177)
++.+..++..-.++|+.||+.
T Consensus 103 ~~~~~~a~~~vg~tCksCH~~ 123 (127)
T d2ccya_ 103 PDALKAQAAATGKVCKACHEE 123 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345888888889999999985
No 6
>d1e85a_ a.24.3.2 (A:) Cytochrome c' {Alcaligenes sp. [TaxId: 512]}
Probab=57.73 E-value=0.78 Score=31.49 Aligned_cols=20 Identities=25% Similarity=0.559 Sum_probs=15.0
Q ss_pred cccchheeeeeccccchhhh
Q 030417 113 ANFARAYTVQFGTCKKCHSS 132 (177)
Q Consensus 113 ANfaRayTV~fGtCk~c~~~ 132 (177)
+.+..++.---++|+.||+.
T Consensus 103 ~~~~~a~~~lg~tCk~CH~~ 122 (125)
T d1e85a_ 103 DKLRAAFGDVGASCKACHDA 122 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 34566666667899999985
No 7
>d1gqaa_ a.24.3.2 (A:) Cytochrome c' {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=54.96 E-value=0.93 Score=31.38 Aligned_cols=20 Identities=40% Similarity=0.595 Sum_probs=14.6
Q ss_pred ccchheeeeeccccchhhhh
Q 030417 114 NFARAYTVQFGTCKKCHSSR 133 (177)
Q Consensus 114 NfaRayTV~fGtCk~c~~~~ 133 (177)
.+..++.---++|+.||+.-
T Consensus 107 ~~~~a~~~lg~sCksCH~~y 126 (130)
T d1gqaa_ 107 ELAAAVGKVGGTCKSCHDDF 126 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHH
Confidence 45556666668999999853
No 8
>d1cpqa_ a.24.3.2 (A:) Cytochrome c' {Rhodobacter capsulatus [TaxId: 1061]}
Probab=54.58 E-value=0.95 Score=31.11 Aligned_cols=20 Identities=40% Similarity=0.677 Sum_probs=15.0
Q ss_pred ccchheeeeeccccchhhhh
Q 030417 114 NFARAYTVQFGTCKKCHSSR 133 (177)
Q Consensus 114 NfaRayTV~fGtCk~c~~~~ 133 (177)
.+..++..--++|+.||+.-
T Consensus 106 ~~~~a~~~l~~sCksCH~~y 125 (129)
T d1cpqa_ 106 AFGAALQKLGGTCKACHDDY 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHH
Confidence 35566666778999999864
No 9
>d2j8wa1 a.24.3.2 (A:1-128) Cytochrome c' {Rhodocyclus gelatinosus [TaxId: 28068]}
Probab=50.25 E-value=0.58 Score=32.32 Aligned_cols=20 Identities=35% Similarity=0.586 Sum_probs=15.7
Q ss_pred cccchheeeeeccccchhhh
Q 030417 113 ANFARAYTVQFGTCKKCHSS 132 (177)
Q Consensus 113 ANfaRayTV~fGtCk~c~~~ 132 (177)
+.+..++.--.++|+.||+.
T Consensus 106 ~~~~~a~~~lg~tCksCH~~ 125 (128)
T d2j8wa1 106 AQIKAAVGETGGACKGCHDK 125 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34667777778999999985
No 10
>d3cx5d1 a.3.1.3 (D:62-260) Cytochrome bc1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=47.66 E-value=1.2 Score=33.98 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=18.4
Q ss_pred cchheeeeeccccchhhhhhh
Q 030417 115 FARAYTVQFGTCKKCHSSRMI 135 (177)
Q Consensus 115 faRayTV~fGtCk~c~~~~~i 135 (177)
..|=+.||--.|-+||++.-.
T Consensus 29 LQRG~qvy~~~C~~CHsl~y~ 49 (199)
T d3cx5d1 29 IRRGYQVYREVCAACHSLDRV 49 (199)
T ss_dssp HHHHHHHHHHTGGGTCCCTTC
T ss_pred HHHHHHHHHHHhhhcccchhh
Confidence 378899999999999998765
No 11
>d1ppjd1 a.3.1.3 (D:1-195) Cytochrome bc1 domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=46.67 E-value=1.2 Score=33.47 Aligned_cols=20 Identities=30% Similarity=0.662 Sum_probs=17.0
Q ss_pred chheeeeeccccchhhhhhh
Q 030417 116 ARAYTVQFGTCKKCHSSRMI 135 (177)
Q Consensus 116 aRayTV~fGtCk~c~~~~~i 135 (177)
.|=+.||--.|-+||+++-+
T Consensus 27 QRGaqvf~nyC~gCHsl~y~ 46 (195)
T d1ppjd1 27 RRGFQVYKQVCSSCHSMDYV 46 (195)
T ss_dssp HHHHHHHHHTGGGTCCCTTC
T ss_pred HhHHHHHHHHHhhccchhhH
Confidence 78889999999999997643
No 12
>d3c2ca_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum rubrum [TaxId: 1085]}
Probab=35.23 E-value=3.9 Score=25.66 Aligned_cols=10 Identities=30% Similarity=0.796 Sum_probs=7.9
Q ss_pred ccccchhhhh
Q 030417 124 GTCKKCHSSR 133 (177)
Q Consensus 124 GtCk~c~~~~ 133 (177)
..|..||++.
T Consensus 12 ~~C~~CH~~~ 21 (112)
T d3c2ca_ 12 KKCLACHTFD 21 (112)
T ss_dssp GGGTTTCCCS
T ss_pred HHHHHhCCCc
Confidence 4599999864
No 13
>d1ctja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Monoraphidium braunii [TaxId: 34112]}
Probab=30.45 E-value=2.2 Score=26.04 Aligned_cols=20 Identities=35% Similarity=0.649 Sum_probs=14.1
Q ss_pred cccchheeeeeccccchhhh
Q 030417 113 ANFARAYTVQFGTCKKCHSS 132 (177)
Q Consensus 113 ANfaRayTV~fGtCk~c~~~ 132 (177)
++.++=..+|...|..||..
T Consensus 2 adl~~G~~ly~~~Ca~CHg~ 21 (89)
T d1ctja_ 2 ADLALGKAVFDGNCAACHAG 21 (89)
T ss_dssp CCHHHHHHHHHHHTHHHHGG
T ss_pred ccHHHHHHHHHHhchhcccc
Confidence 44555566677789999964
No 14
>d1jdla_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenum [TaxId: 34018]}
Probab=29.96 E-value=5.2 Score=26.83 Aligned_cols=12 Identities=33% Similarity=0.794 Sum_probs=9.0
Q ss_pred eccccchhhhhh
Q 030417 123 FGTCKKCHSSRM 134 (177)
Q Consensus 123 fGtCk~c~~~~~ 134 (177)
|..|..||++.+
T Consensus 10 F~~C~~CH~v~~ 21 (118)
T d1jdla_ 10 FKKCMACHRVGP 21 (118)
T ss_dssp GGGTTTTCCCST
T ss_pred HHHHHHhCCcCC
Confidence 356999998743
No 15
>d1ql3a_ a.3.1.1 (A:) Cytochrome c552 {Paracoccus denitrificans [TaxId: 266]}
Probab=28.68 E-value=5.8 Score=26.05 Aligned_cols=10 Identities=50% Similarity=1.205 Sum_probs=8.1
Q ss_pred ccccchhhhh
Q 030417 124 GTCKKCHSSR 133 (177)
Q Consensus 124 GtCk~c~~~~ 133 (177)
..|..||++.
T Consensus 11 ~~C~~CHs~~ 20 (99)
T d1ql3a_ 11 GKCKACHKLD 20 (99)
T ss_dssp GGTTTTCCSS
T ss_pred HHHHhhCCcC
Confidence 5699999873
No 16
>d1c6sa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Cyanobacterium (Synechococcus elongatus) [TaxId: 32046]}
Probab=26.67 E-value=4.5 Score=24.44 Aligned_cols=19 Identities=32% Similarity=0.660 Sum_probs=13.3
Q ss_pred ccchheeeeeccccchhhh
Q 030417 114 NFARAYTVQFGTCKKCHSS 132 (177)
Q Consensus 114 NfaRayTV~fGtCk~c~~~ 132 (177)
+.++=..+|-..|-.||..
T Consensus 2 d~~~G~~ly~~~Ca~CHg~ 20 (87)
T d1c6sa_ 2 DLANGAKVFSGNCAACHMG 20 (87)
T ss_dssp CHHHHHHHHTTTGGGGCTT
T ss_pred cHHHHHHHHHHHChhhhhh
Confidence 3445556677889999963
No 17
>d1cxca_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=26.03 E-value=7.3 Score=24.93 Aligned_cols=10 Identities=30% Similarity=0.873 Sum_probs=7.9
Q ss_pred ccccchhhhh
Q 030417 124 GTCKKCHSSR 133 (177)
Q Consensus 124 GtCk~c~~~~ 133 (177)
-.|..||.+.
T Consensus 13 ~~Ca~CH~i~ 22 (124)
T d1cxca_ 13 NQCQTCHVIV 22 (124)
T ss_dssp GGGGGTCCEE
T ss_pred HhhHhhCCcc
Confidence 3599999764
No 18
>d1cota_ a.3.1.1 (A:) Cytochrome c2 {Paracoccus denitrificans [TaxId: 266]}
Probab=23.89 E-value=7.7 Score=25.40 Aligned_cols=10 Identities=40% Similarity=1.019 Sum_probs=8.2
Q ss_pred ccccchhhhh
Q 030417 124 GTCKKCHSSR 133 (177)
Q Consensus 124 GtCk~c~~~~ 133 (177)
-.|..||++.
T Consensus 12 ~~C~~CH~~~ 21 (121)
T d1cota_ 12 NKCKACHMIQ 21 (121)
T ss_dssp GGTTTTCCEE
T ss_pred HhCcccCccC
Confidence 4599999985
No 19
>d1vyda_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter capsulatus [TaxId: 1061]}
Probab=23.26 E-value=8.1 Score=25.53 Aligned_cols=10 Identities=50% Similarity=1.026 Sum_probs=8.2
Q ss_pred ccccchhhhh
Q 030417 124 GTCKKCHSSR 133 (177)
Q Consensus 124 GtCk~c~~~~ 133 (177)
..|..||++.
T Consensus 11 ~~C~~CH~i~ 20 (116)
T d1vyda_ 11 NKCKTCHSII 20 (116)
T ss_dssp GGTTTTCCEE
T ss_pred HHhHHhCCCc
Confidence 5699999974
No 20
>d1mz4a_ a.3.1.1 (A:) Cytochrome c550 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=21.66 E-value=3 Score=26.87 Aligned_cols=17 Identities=18% Similarity=0.460 Sum_probs=11.8
Q ss_pred cchheeeeeccccchhh
Q 030417 115 FARAYTVQFGTCKKCHS 131 (177)
Q Consensus 115 faRayTV~fGtCk~c~~ 131 (177)
.+|=..+|.+.|..||.
T Consensus 26 ~~~Gk~lf~~~Ca~CH~ 42 (131)
T d1mz4a_ 26 YLEGKRLFQYACASCHV 42 (131)
T ss_dssp HHHHHHHHHHHTHHHHG
T ss_pred HHHHHHHHHHHhHHHcC
Confidence 34445556678999995
No 21
>d1gdva_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Red alga (Porphyra yezoensis) [TaxId: 2788]}
Probab=21.39 E-value=3.5 Score=24.75 Aligned_cols=17 Identities=24% Similarity=0.554 Sum_probs=11.6
Q ss_pred cchheeeeeccccchhh
Q 030417 115 FARAYTVQFGTCKKCHS 131 (177)
Q Consensus 115 faRayTV~fGtCk~c~~ 131 (177)
.+|=..+|...|-.||.
T Consensus 3 i~~G~~ly~~~Ca~CHg 19 (85)
T d1gdva_ 3 LDNGEKVFSANCAACHA 19 (85)
T ss_dssp HHHHHHHHHHHTHHHHG
T ss_pred HHHHHHHHHHHChHhhh
Confidence 34444556677999995
No 22
>d1qn2a_ a.3.1.1 (A:) Cytochrome ch {Methylobacterium extorquens [TaxId: 408]}
Probab=21.28 E-value=10 Score=24.97 Aligned_cols=10 Identities=40% Similarity=1.029 Sum_probs=8.0
Q ss_pred ccccchhhhh
Q 030417 124 GTCKKCHSSR 133 (177)
Q Consensus 124 GtCk~c~~~~ 133 (177)
..|..||++.
T Consensus 12 ~~C~~CH~i~ 21 (99)
T d1qn2a_ 12 APCKACHNFE 21 (99)
T ss_dssp GGGGGTCCSS
T ss_pred HhHHHHcCCc
Confidence 4599999873
No 23
>d1nira1 a.3.1.2 (A:6-117) N-terminal (heme c) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=21.16 E-value=3.3 Score=27.43 Aligned_cols=20 Identities=30% Similarity=0.725 Sum_probs=13.9
Q ss_pred cccchheeeeeccccchhhh
Q 030417 113 ANFARAYTVQFGTCKKCHSS 132 (177)
Q Consensus 113 ANfaRayTV~fGtCk~c~~~ 132 (177)
+.++|-..+|...|-.||..
T Consensus 29 ~~~~~G~~ly~~~Ca~CHG~ 48 (112)
T d1nira1 29 SEFNEAKQIYFQRCAGCHGV 48 (112)
T ss_dssp HHHHHHHHHHHHHTHHHHTT
T ss_pred HHHHHHHHHHHHHccccccc
Confidence 34556666667779999954
No 24
>d1kb0a1 a.3.1.6 (A:579-675) Quinoprotein alcohol dehydrogenase, C-terminal domain {Comamonas testosteroni [TaxId: 285]}
Probab=20.80 E-value=4.6 Score=25.34 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=16.3
Q ss_pred ccccchheeeeeccccchhhh
Q 030417 112 GANFARAYTVQFGTCKKCHSS 132 (177)
Q Consensus 112 ~ANfaRayTV~fGtCk~c~~~ 132 (177)
.+..+|=..+|...|-.||..
T Consensus 12 ~~~~~~G~~ly~~~Ca~CHG~ 32 (97)
T d1kb0a1 12 PAKVEAGTMLYVANCVFCHGV 32 (97)
T ss_dssp GGGHHHHHHHHHHHTHHHHCS
T ss_pred HHHHHHHHHHHHHHhHHhhCC
Confidence 455677778888899999964
Done!