BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030419
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OAC|A Chain A, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
Of Escherichia Coli At 2 Angstroems Resolution
pdb|1OAC|B Chain B, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
Of Escherichia Coli At 2 Angstroems Resolution
pdb|1SPU|A Chain A, Structure Of Oxidoreductase
pdb|1SPU|B Chain B, Structure Of Oxidoreductase
pdb|1D6U|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
Reduced With Beta-Phenylethylamine
pdb|1D6U|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
Reduced With Beta-Phenylethylamine
pdb|1D6Y|A Chain A, Crystal Structure Of E. Coli Copper-Containing Amine
Oxidase Anaerobically Reduced With Beta-Phenylethylamine
And Complexed With Nitric Oxide.
pdb|1D6Y|B Chain B, Crystal Structure Of E. Coli Copper-Containing Amine
Oxidase Anaerobically Reduced With Beta-Phenylethylamine
And Complexed With Nitric Oxide.
pdb|1D6Z|A Chain A, Crystal Structure Of The Aerobically Freeze Trapped
Rate-determining Catalytic Intermediate Of E. Coli
Copper-containing Amine Oxidase.
pdb|1D6Z|B Chain B, Crystal Structure Of The Aerobically Freeze Trapped
Rate-determining Catalytic Intermediate Of E. Coli
Copper-containing Amine Oxidase.
pdb|1DYU|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase: X-Ray Crystallographic
Studies With Mutational Variants.
pdb|1DYU|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase: X-Ray Crystallographic
Studies With Mutational Variants.
pdb|1LVN|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Complexed With
Tranylcypromine
pdb|1LVN|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Complexed With
Tranylcypromine
pdb|2W0Q|A Chain A, E. Coli Copper Amine Oxidase In Complex With Xenon
pdb|2W0Q|B Chain B, E. Coli Copper Amine Oxidase In Complex With Xenon
pdb|2WO0|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WO0|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOF|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOF|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOH|A Chain A, Strontium Soaked E. Coli Copper Amine Oxidase
pdb|2WOH|B Chain B, Strontium Soaked E. Coli Copper Amine Oxidase
Length = 727
Score = 28.1 bits (61), Expect = 3.0, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 18/95 (18%)
Query: 81 DKSGKWVITKFVKEHNHPLVVAPREARQTMDEKDKKIQELTVELRNKKRLCALYQEQLTT 140
DK W F E N P V PR+A M + K I E V+L+N K L +
Sbjct: 132 DKEAVWA---FALE-NKP-VDQPRKADVIMLD-GKHIIEAVVDLQNNK---------LLS 176
Query: 141 FMKVVEVHSDHL---SKKVQNVINNLKEFESIEKE 172
+ + + H L VQN+INN +EF + K+
Sbjct: 177 WQPIKDAHGMVLLDDFASVQNIINNSEEFAAAVKK 211
>pdb|2WGQ|A Chain A, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
Formation
pdb|2WGQ|B Chain B, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
Formation
Length = 727
Score = 28.1 bits (61), Expect = 3.0, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 18/95 (18%)
Query: 81 DKSGKWVITKFVKEHNHPLVVAPREARQTMDEKDKKIQELTVELRNKKRLCALYQEQLTT 140
DK W F E N P V PR+A M + K I E V+L+N K L +
Sbjct: 132 DKEAVWA---FALE-NKP-VDQPRKADVIMLD-GKHIIEAVVDLQNNK---------LLS 176
Query: 141 FMKVVEVHSDHL---SKKVQNVINNLKEFESIEKE 172
+ + + H L VQN+INN +EF + K+
Sbjct: 177 WQPIKDAHGMVLLDDFASVQNIINNSEEFAAAVKK 211
>pdb|1QAL|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
pdb|1QAL|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
Length = 721
Score = 28.1 bits (61), Expect = 3.0, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 18/95 (18%)
Query: 81 DKSGKWVITKFVKEHNHPLVVAPREARQTMDEKDKKIQELTVELRNKKRLCALYQEQLTT 140
DK W F E N P V PR+A M + K I E V+L+N K L +
Sbjct: 127 DKEAVWA---FALE-NKP-VDQPRKADVIMLD-GKHIIEAVVDLQNNK---------LLS 171
Query: 141 FMKVVEVHSDHL---SKKVQNVINNLKEFESIEKE 172
+ + + H L VQN+INN +EF + K+
Sbjct: 172 WQPIKDAHGMVLLDDFASVQNIINNSEEFAAAVKK 206
>pdb|1QAF|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
pdb|1QAF|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
Length = 721
Score = 28.1 bits (61), Expect = 3.0, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 18/95 (18%)
Query: 81 DKSGKWVITKFVKEHNHPLVVAPREARQTMDEKDKKIQELTVELRNKKRLCALYQEQLTT 140
DK W F E N P V PR+A M + K I E V+L+N K L +
Sbjct: 127 DKEAVWA---FALE-NKP-VDQPRKADVIMLD-GKHIIEAVVDLQNNK---------LLS 171
Query: 141 FMKVVEVHSDHL---SKKVQNVINNLKEFESIEKE 172
+ + + H L VQN+INN +EF + K+
Sbjct: 172 WQPIKDAHGMVLLDDFASVQNIINNSEEFAAAVKK 206
>pdb|1QAK|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-ray Crystallographic
Studies With Mutational Variants
pdb|1QAK|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-ray Crystallographic
Studies With Mutational Variants
Length = 722
Score = 28.1 bits (61), Expect = 3.0, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 18/95 (18%)
Query: 81 DKSGKWVITKFVKEHNHPLVVAPREARQTMDEKDKKIQELTVELRNKKRLCALYQEQLTT 140
DK W F E N P V PR+A M + K I E V+L+N K L +
Sbjct: 127 DKEAVWA---FALE-NKP-VDQPRKADVIMLD-GKHIIEAVVDLQNNK---------LLS 171
Query: 141 FMKVVEVHSDHL---SKKVQNVINNLKEFESIEKE 172
+ + + H L VQN+INN +EF + K+
Sbjct: 172 WQPIKDAHGMVLLDDFASVQNIINNSEEFAAAVKK 206
>pdb|1JRQ|A Chain A, X-Ray Structure Analysis Of The Role Of The Conserved
Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
pdb|1JRQ|B Chain B, X-Ray Structure Analysis Of The Role Of The Conserved
Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
Length = 727
Score = 28.1 bits (61), Expect = 3.0, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 18/95 (18%)
Query: 81 DKSGKWVITKFVKEHNHPLVVAPREARQTMDEKDKKIQELTVELRNKKRLCALYQEQLTT 140
DK W F E N P V PR+A M + K I E V+L+N K L +
Sbjct: 132 DKEAVWA---FALE-NKP-VDQPRKADVIMLD-GKHIIEAVVDLQNNK---------LLS 176
Query: 141 FMKVVEVHSDHL---SKKVQNVINNLKEFESIEKE 172
+ + + H L VQN+INN +EF + K+
Sbjct: 177 WQPIKDAHGMVLLDDFASVQNIINNSEEFAAAVKK 211
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,917,176
Number of Sequences: 62578
Number of extensions: 188875
Number of successful extensions: 630
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 630
Number of HSP's gapped (non-prelim): 10
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)