Query 030419
Match_columns 177
No_of_seqs 183 out of 524
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 13:26:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030419.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030419hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03097 FHY3 Protein FAR-RED 100.0 2.9E-34 6.3E-39 271.3 14.9 166 1-173 78-256 (846)
2 PF03101 FAR1: FAR1 DNA-bindin 100.0 5.1E-30 1.1E-34 182.4 8.7 91 11-101 1-91 (91)
3 PF08731 AFT: Transcription fa 98.7 1E-07 2.2E-12 70.6 9.1 90 3-99 1-111 (111)
4 PF03108 DBD_Tnp_Mut: MuDR fam 97.0 0.0044 9.5E-08 41.4 7.2 59 1-88 8-67 (67)
5 PF03106 WRKY: WRKY DNA -bindi 91.1 0.32 7E-06 32.2 3.4 28 71-98 31-59 (60)
6 PF04500 FLYWCH: FLYWCH zinc f 89.1 0.26 5.7E-06 31.3 1.7 25 70-97 38-62 (62)
7 smart00774 WRKY DNA binding do 79.4 2.5 5.5E-05 27.9 3.0 28 70-97 31-59 (59)
8 COG5470 Uncharacterized conser 76.2 1.1 2.3E-05 32.5 0.5 28 1-28 58-85 (96)
9 PF07576 BRAP2: BRCA1-associat 71.0 2.6 5.7E-05 31.1 1.6 18 1-18 59-76 (110)
10 PF02185 HR1: Hr1 repeat; Int 64.8 38 0.00083 22.4 6.8 59 116-174 2-67 (70)
11 PF04684 BAF1_ABF1: BAF1 / ABF 61.3 4.9 0.00011 36.9 1.6 40 2-47 27-66 (496)
12 PF07045 DUF1330: Protein of u 60.6 2.8 6.2E-05 27.6 0.0 15 1-15 44-58 (65)
13 PF04800 ETC_C1_NDUFA4: ETC co 57.5 9.1 0.0002 27.9 2.2 24 1-28 53-76 (101)
14 PF05377 FlaC_arch: Flagella a 51.7 32 0.00069 22.4 3.8 29 138-166 12-40 (55)
15 PF06156 DUF972: Protein of un 49.6 40 0.00086 24.8 4.6 31 142-172 10-40 (107)
16 PF03791 KNOX2: KNOX2 domain ; 44.6 70 0.0015 20.5 4.6 38 128-172 12-49 (52)
17 PF12441 DUF3680: Protein of u 43.8 21 0.00045 21.9 1.9 14 2-15 7-20 (42)
18 PF03670 UPF0184: Uncharacteri 43.0 68 0.0015 22.6 4.7 40 133-172 33-72 (83)
19 PF03037 KMP11: Kinetoplastid 38.0 83 0.0018 21.8 4.4 37 129-165 39-75 (90)
20 PF05739 SNARE: SNARE domain; 37.1 1.1E+02 0.0023 19.3 7.2 54 114-167 3-59 (63)
21 PF09556 RE_HaeIII: HaeIII res 33.9 2.1E+02 0.0046 24.9 7.1 80 83-163 99-201 (300)
22 PF15299 ALS2CR8: Amyotrophic 33.1 32 0.0007 28.3 2.1 19 61-79 69-87 (225)
23 PRK13169 DNA replication intia 29.2 1.3E+02 0.0028 22.3 4.5 20 147-166 36-55 (110)
24 PF03462 PCRF: PCRF domain; I 28.9 2.3E+02 0.005 20.6 6.4 37 7-44 66-102 (115)
25 PRK08179 prfH peptide chain re 27.4 1.8E+02 0.004 23.7 5.5 43 7-49 20-62 (200)
26 PF07889 DUF1664: Protein of u 27.1 1.6E+02 0.0035 22.3 4.8 30 133-162 47-76 (126)
27 PF00847 AP2: AP2 domain; Int 26.6 75 0.0016 19.6 2.6 18 2-19 35-52 (56)
28 PF09929 DUF2161: Uncharacteri 26.5 2.1E+02 0.0045 21.5 5.2 64 91-157 10-80 (118)
29 TIGR03072 release_prfH putativ 25.2 2.1E+02 0.0046 23.3 5.6 44 7-50 19-62 (200)
30 PF14357 DUF4404: Domain of un 24.2 2.5E+02 0.0055 19.5 5.2 32 117-148 6-37 (85)
31 PF07511 DUF1525: Protein of u 24.1 1.8E+02 0.0039 21.7 4.5 45 94-138 9-54 (114)
32 PF10234 Cluap1: Clusterin-ass 23.9 2.3E+02 0.0051 24.2 5.8 54 115-168 197-250 (267)
33 PF09954 DUF2188: Uncharacteri 23.9 2E+02 0.0044 18.3 5.0 34 2-40 24-58 (62)
34 PF01672 Plasmid_parti: Putati 22.6 40 0.00086 23.9 0.7 17 7-23 59-75 (85)
35 PF07011 DUF1313: Protein of u 22.0 1.6E+02 0.0034 21.0 3.6 48 95-150 34-81 (87)
36 PF08946 Osmo_CC: Osmosensory 21.8 1.3E+02 0.0029 18.8 2.8 29 145-173 10-38 (46)
37 cd07655 F-BAR_PACSIN The F-BAR 20.7 4.4E+02 0.0095 21.9 6.8 57 117-173 170-226 (258)
38 PHA02122 hypothetical protein 20.6 1.6E+02 0.0034 19.4 3.1 33 70-102 27-59 (65)
39 COG3058 FdhE Uncharacterized p 20.6 2.7E+02 0.0058 24.2 5.4 57 113-172 76-137 (308)
40 PF14398 ATPgrasp_YheCD: YheC/ 20.1 5.1E+02 0.011 21.5 8.0 38 67-104 124-166 (262)
41 PF15035 Rootletin: Ciliary ro 20.1 4.6E+02 0.0099 20.9 6.8 46 116-165 61-113 (182)
No 1
>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
Probab=100.00 E-value=2.9e-34 Score=271.26 Aligned_cols=166 Identities=25% Similarity=0.423 Sum_probs=117.7
Q ss_pred CccCCHHHHHHHHHHHhhhhCceEEEeeeeeccCCCceEEEEEeecCCCcccccCC--CC---------C-CccCCCCCc
Q 030419 1 MEFDSEEAAKIFYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRG--KF---------G-PVRKPRPST 68 (177)
Q Consensus 1 M~F~s~eeA~~FY~~YA~~~GF~vR~~~~~rs~~dg~i~~~~fvCsreG~~~~~~~--~~---------~-~~~r~r~~t 68 (177)
|+|+|+||||+||+.||+++||+||++++++++.+|.|+++.|||||||++..+.. .. + ..+++|+.+
T Consensus 78 MeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k~~~~~~~~rR~~t 157 (846)
T PLN03097 78 MEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDPENGTGRRSCA 157 (846)
T ss_pred CeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCcccccccccccccccccCccccccccccc
Confidence 89999999999999999999999999999999999999999999999999754211 00 0 112356789
Q ss_pred ccccccEEEEEEccCCcEEEEEeccccCccCCCCCcccccCChhHHHHHHHH-HHHhhhhhhhhHHHHHHHHHHHHHHHh
Q 030419 69 REGCKAMIHVKFDKSGKWVITKFVKEHNHPLVVAPREARQTMDEKDKKIQEL-TVELRNKKRLCALYQEQLTTFMKVVEV 147 (177)
Q Consensus 69 R~gC~A~i~v~~~~~g~W~V~~f~~eHNH~L~~~~~~~r~~~d~kdkkI~EL-~~el~~~~k~~~~~r~~l~~~~k~~ee 147 (177)
||||+|+|+|++.++|+|+|++|+++|||||+|+... +...++|... ...+.....+. .......+.+... .
T Consensus 158 RtGC~A~m~Vk~~~~gkW~V~~fv~eHNH~L~p~~~~-----~~~~r~~~~~~~~~~~~~~~v~-~~~~d~~~~~~~~-r 230 (846)
T PLN03097 158 KTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQAV-----SEQTRKMYAAMARQFAEYKNVV-GLKNDSKSSFDKG-R 230 (846)
T ss_pred CCCCceEEEEEEcCCCeEEEEEEecCCCCCCCCcccc-----chhhhhhHHHHHhhhhcccccc-ccchhhcchhhHH-H
Confidence 9999999999998789999999999999999987642 2233333222 22222111111 0000001111110 0
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhhhhh
Q 030419 148 HSDHLSKKVQNVINNLKEFESIEKEL 173 (177)
Q Consensus 148 h~~~ls~~v~~~v~~~k~~e~~~~~~ 173 (177)
.+.-...|++.++++|++++.++|.+
T Consensus 231 ~~~~~~gD~~~ll~yf~~~q~~nP~F 256 (846)
T PLN03097 231 NLGLEAGDTKILLDFFTQMQNMNSNF 256 (846)
T ss_pred hhhcccchHHHHHHHHHHHHhhCCCc
Confidence 11223579999999999999999976
No 2
>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants. It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.
Probab=99.96 E-value=5.1e-30 Score=182.39 Aligned_cols=91 Identities=45% Similarity=0.748 Sum_probs=82.8
Q ss_pred HHHHHHhhhhCceEEEeeeeeccCCCceEEEEEeecCCCcccccCCCCCCccCCCCCcccccccEEEEEEccCCcEEEEE
Q 030419 11 IFYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGPVRKPRPSTREGCKAMIHVKFDKSGKWVITK 90 (177)
Q Consensus 11 ~FY~~YA~~~GF~vR~~~~~rs~~dg~i~~~~fvCsreG~~~~~~~~~~~~~r~r~~tR~gC~A~i~v~~~~~g~W~V~~ 90 (177)
+||++||..+||+||++++++++.+|.+++..|+|+++|+...........+++++++||||+|+|.|++..+|.|.|+.
T Consensus 1 ~fy~~yA~~~GF~vr~~~s~~~~~~~~~~~~~~~C~r~G~~~~~~~~~~~~~r~~~s~ktgC~a~i~v~~~~~~~w~v~~ 80 (91)
T PF03101_consen 1 DFYNSYARRHGFSVRKSSSRKSKKNGEIKRVTFVCSRGGKYKSKKKNEEKRRRNRPSKKTGCKARINVKRRKDGKWRVTS 80 (91)
T ss_pred CHHHHhcCcCCeEEEEeeeEeCCCCceEEEEEEEECCcccccccccccccccccccccccCCCEEEEEEEccCCEEEEEE
Confidence 59999999999999999999888899999999999999998876543345677899999999999999998789999999
Q ss_pred eccccCccCCC
Q 030419 91 FVKEHNHPLVV 101 (177)
Q Consensus 91 f~~eHNH~L~~ 101 (177)
|+.+|||||+|
T Consensus 81 ~~~~HNH~L~P 91 (91)
T PF03101_consen 81 FVLEHNHPLCP 91 (91)
T ss_pred CcCCcCCCCCC
Confidence 99999999987
No 3
>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis. This entry includes the paralogous pair of transcription factors AFT1 and AFT2.
Probab=98.73 E-value=1e-07 Score=70.56 Aligned_cols=90 Identities=21% Similarity=0.376 Sum_probs=67.4
Q ss_pred cCCHHHHHHHHHHHhhhhCceEEEeeeeeccCCCceEEEEEeecCCCcccccCCC--------------------CCCcc
Q 030419 3 FDSEEAAKIFYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGK--------------------FGPVR 62 (177)
Q Consensus 3 F~s~eeA~~FY~~YA~~~GF~vR~~~~~rs~~dg~i~~~~fvCsreG~~~~~~~~--------------------~~~~~ 62 (177)
|++-+|...|.-..+...||+|-+.+|.. .. ..|-|--.|........ .....
T Consensus 1 F~~k~~ikpwlq~~~~~~Gi~iVIerSd~----~k---i~FkCk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 73 (111)
T PF08731_consen 1 FDDKDEIKPWLQKIFYPQGIGIVIERSDK----KK---IVFKCKNGKRYRHKKKKKGQAQAQQKESTSGNKNKSSKKKKK 73 (111)
T ss_pred CCchHHHHHHHHHHhhhcCceEEEEecCC----ce---EEEEEecCCCcccccccccccccccccccccccccccccccC
Confidence 89999999999999999999999986542 22 35889655554333221 01112
Q ss_pred CCCCCcccccccEEEEEEc-cCCcEEEEEeccccCccC
Q 030419 63 KPRPSTREGCKAMIHVKFD-KSGKWVITKFVKEHNHPL 99 (177)
Q Consensus 63 r~r~~tR~gC~A~i~v~~~-~~g~W~V~~f~~eHNH~L 99 (177)
+.-.+..++||.+|+-... ..++|-|.-+..+|||||
T Consensus 74 k~t~srk~~CPFriRA~yS~k~k~W~lvvvnn~HnH~l 111 (111)
T PF08731_consen 74 KRTKSRKNTCPFRIRANYSKKNKKWTLVVVNNEHNHPL 111 (111)
T ss_pred CcccccccCCCeEEEEEEEecCCeEEEEEecCCcCCCC
Confidence 2335678999999999876 478999999999999998
No 4
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]. The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=97.03 E-value=0.0044 Score=41.37 Aligned_cols=59 Identities=29% Similarity=0.403 Sum_probs=48.2
Q ss_pred CccCCHHHHHHHHHHHhhhhCceEEEeeeeeccCCCceEEEEEeecCCCcccccCCCCCCccCCCCCcccccccEEEEEE
Q 030419 1 MEFDSEEAAKIFYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGPVRKPRPSTREGCKAMIHVKF 80 (177)
Q Consensus 1 M~F~s~eeA~~FY~~YA~~~GF~vR~~~~~rs~~dg~i~~~~fvCsreG~~~~~~~~~~~~~r~r~~tR~gC~A~i~v~~ 80 (177)
|.|+|.+|.......||-..||.++...+. . .+...+|. + .||+.+|....
T Consensus 8 ~~F~~~~e~k~av~~yai~~~~~~~v~ksd-----~--~r~~~~C~--~--------------------~~C~Wrv~as~ 58 (67)
T PF03108_consen 8 QTFPSKEEFKEAVREYAIKNGFEFKVKKSD-----K--KRYRAKCK--D--------------------KGCPWRVRASK 58 (67)
T ss_pred CEECCHHHHHHHHHHHHHhcCcEEEEeccC-----C--EEEEEEEc--C--------------------CCCCEEEEEEE
Confidence 789999999999999999999999987553 1 35678885 1 36999999998
Q ss_pred cc-CCcEEE
Q 030419 81 DK-SGKWVI 88 (177)
Q Consensus 81 ~~-~g~W~V 88 (177)
.+ ++.|.|
T Consensus 59 ~~~~~~~~I 67 (67)
T PF03108_consen 59 RKRSDTFQI 67 (67)
T ss_pred cCCCCEEEC
Confidence 75 577875
No 5
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif. The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.
Probab=91.08 E-value=0.32 Score=32.16 Aligned_cols=28 Identities=39% Similarity=0.642 Sum_probs=21.8
Q ss_pred ccccEEEEEEcc-CCcEEEEEeccccCcc
Q 030419 71 GCKAMIHVKFDK-SGKWVITKFVKEHNHP 98 (177)
Q Consensus 71 gC~A~i~v~~~~-~g~W~V~~f~~eHNH~ 98 (177)
||+|+-.|.... |+.-+++....+||||
T Consensus 31 ~C~akK~Vqr~~~d~~~~~vtY~G~H~h~ 59 (60)
T PF03106_consen 31 GCPAKKQVQRSADDPNIVIVTYEGEHNHP 59 (60)
T ss_dssp TEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred ChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence 899999998764 7888888999999997
No 6
>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.
Probab=89.13 E-value=0.26 Score=31.32 Aligned_cols=25 Identities=32% Similarity=0.581 Sum_probs=10.8
Q ss_pred cccccEEEEEEccCCcEEEEEeccccCc
Q 030419 70 EGCKAMIHVKFDKSGKWVITKFVKEHNH 97 (177)
Q Consensus 70 ~gC~A~i~v~~~~~g~W~V~~f~~eHNH 97 (177)
.+|+|++.+. . +.-.|.....+|||
T Consensus 38 ~~C~a~~~~~-~--~~~~~~~~~~~HnH 62 (62)
T PF04500_consen 38 HGCRARLITD-A--GDGRVVRTNGEHNH 62 (62)
T ss_dssp S----EEEEE-----TTEEEE-S---SS
T ss_pred CCCeEEEEEE-C--CCCEEEECCCccCC
Confidence 6899999998 2 23355555689999
No 7
>smart00774 WRKY DNA binding domain. The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.
Probab=79.38 E-value=2.5 Score=27.91 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=23.4
Q ss_pred cccccEEEEEEc-cCCcEEEEEeccccCc
Q 030419 70 EGCKAMIHVKFD-KSGKWVITKFVKEHNH 97 (177)
Q Consensus 70 ~gC~A~i~v~~~-~~g~W~V~~f~~eHNH 97 (177)
.||+|+-.|... +|+.-.++-...+|||
T Consensus 31 ~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h 59 (59)
T smart00774 31 QGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59 (59)
T ss_pred CCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence 689999888776 3678888888999998
No 8
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=76.21 E-value=1.1 Score=32.53 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=21.6
Q ss_pred CccCCHHHHHHHHHHHhhhhCceEEEee
Q 030419 1 MEFDSEEAAKIFYDEYARRVGFVMRVMS 28 (177)
Q Consensus 1 M~F~s~eeA~~FY~~YA~~~GF~vR~~~ 28 (177)
|+|+|++.|++|||+=+...--++|...
T Consensus 58 iEFps~~~ar~~y~SpeYq~a~~~Rq~~ 85 (96)
T COG5470 58 IEFPSLEAARDCYNSPEYQAAAAIRQAA 85 (96)
T ss_pred EEcCCHHHHHHHhcCHHHHHHHHHHhhc
Confidence 6899999999999986666555566543
No 9
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=70.99 E-value=2.6 Score=31.14 Aligned_cols=18 Identities=33% Similarity=0.785 Sum_probs=16.0
Q ss_pred CccCCHHHHHHHHHHHhh
Q 030419 1 MEFDSEEAAKIFYDEYAR 18 (177)
Q Consensus 1 M~F~s~eeA~~FY~~YA~ 18 (177)
|.|.+.++|.+||..|=.
T Consensus 59 ikF~~~~~Ad~Fy~~fNG 76 (110)
T PF07576_consen 59 IKFRDQESADEFYEEFNG 76 (110)
T ss_pred EEECCHHHHHHHHHHhCC
Confidence 579999999999999953
No 10
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=64.80 E-value=38 Score=22.42 Aligned_cols=59 Identities=12% Similarity=0.217 Sum_probs=47.2
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHH-------HHHHHHhhhhhhhhhHHHHHHHHHHhhhhhhhhh
Q 030419 116 KIQELTVELRNKKRLCALYQEQLTT-------FMKVVEVHSDHLSKKVQNVINNLKEFESIEKELS 174 (177)
Q Consensus 116 kI~EL~~el~~~~k~~~~~r~~l~~-------~~k~~eeh~~~ls~~v~~~v~~~k~~e~~~~~~~ 174 (177)
+|.+|..++..+.++-++...++.. ++...+.....-+.+|+.+-..+.++....+...
T Consensus 2 ~i~~L~~~i~~E~ki~~Gae~m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~~~~~ 67 (70)
T PF02185_consen 2 RIEELQKKIDKELKIKEGAENMLQAYSTDKKKVLSEAESQLRESNQKIELLREQLEKLQQRSQNSQ 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCC
Confidence 5778889999999999988888875 3667788888899999999999999988776554
No 11
>PF04684 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising factor; InterPro: IPR006774 ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication. ABF1 is known to remodel chromatin, and it is proposed that it mediates its effects on transcription and gene expression by modifying local chromatin architecture []. These functions require a conserved stretch of 20 amino acids in the C-terminal region of ABF1 (amino acids 639 to 662 Saccharomyces cerevisiae (P14164 from SWISSPROT)) []. The N-terminal two thirds of the protein are necessary for DNA binding, and the N terminus (amino acids 9 to 91 in S. cerevisiae) is thought to contain a novel zinc-finger motif which may stabilise the protein structure [].; GO: 0003677 DNA binding, 0006338 chromatin remodeling, 0005634 nucleus
Probab=61.27 E-value=4.9 Score=36.87 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=29.4
Q ss_pred ccCCHHHHHHHHHHHhhhhCceEEEeeeeeccCCCceEEEEEeecC
Q 030419 2 EFDSEEAAKIFYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNK 47 (177)
Q Consensus 2 ~F~s~eeA~~FY~~YA~~~GF~vR~~~~~rs~~dg~i~~~~fvCsr 47 (177)
.|+|+++=|.--|.|--..---|.-..|-|.+ ..+|.|..
T Consensus 27 ~f~tl~~wy~v~ndyefq~rcpiilknsh~nk------hftfachl 66 (496)
T PF04684_consen 27 KFPTLEAWYNVINDYEFQSRCPIILKNSHRNK------HFTFACHL 66 (496)
T ss_pred CCCcHHHHHHHHhhhhhhhcCceeeccccccc------ceEEEeec
Confidence 59999999999999988777776655554422 35677754
No 12
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=60.56 E-value=2.8 Score=27.56 Aligned_cols=15 Identities=53% Similarity=0.826 Sum_probs=13.4
Q ss_pred CccCCHHHHHHHHHH
Q 030419 1 MEFDSEEAAKIFYDE 15 (177)
Q Consensus 1 M~F~s~eeA~~FY~~ 15 (177)
++|+|.++|..||++
T Consensus 44 ieFPs~~aa~~~~~s 58 (65)
T PF07045_consen 44 IEFPSMEAAKAWYNS 58 (65)
T ss_dssp EEESSHHHHHHHHCS
T ss_pred EECCCHHHHHHHHCC
Confidence 479999999999975
No 13
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=57.54 E-value=9.1 Score=27.95 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=18.2
Q ss_pred CccCCHHHHHHHHHHHhhhhCceEEEee
Q 030419 1 MEFDSEEAAKIFYDEYARRVGFVMRVMS 28 (177)
Q Consensus 1 M~F~s~eeA~~FY~~YA~~~GF~vR~~~ 28 (177)
|.|+|.|+|.. ||.+.|..-.+..
T Consensus 53 l~F~skE~Ai~----yaer~G~~Y~V~~ 76 (101)
T PF04800_consen 53 LKFDSKEDAIA----YAERNGWDYEVEE 76 (101)
T ss_dssp EEESSHHHHHH----HHHHCT-EEEEE-
T ss_pred eeeCCHHHHHH----HHHHcCCeEEEeC
Confidence 57999999975 6889998876654
No 14
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=51.73 E-value=32 Score=22.42 Aligned_cols=29 Identities=17% Similarity=0.449 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHh
Q 030419 138 LTTFMKVVEVHSDHLSKKVQNVINNLKEF 166 (177)
Q Consensus 138 l~~~~k~~eeh~~~ls~~v~~~v~~~k~~ 166 (177)
+.+.+..++.+.++++..|+.+=+++|+|
T Consensus 12 ~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 12 IESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446677778888888888888888876
No 15
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=49.55 E-value=40 Score=24.77 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=16.2
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHhhhhhhh
Q 030419 142 MKVVEVHSDHLSKKVQNVINNLKEFESIEKE 172 (177)
Q Consensus 142 ~k~~eeh~~~ls~~v~~~v~~~k~~e~~~~~ 172 (177)
+..+|+++..+..+|+.+...+.+|..|+..
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~ 40 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENAR 40 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555554443
No 16
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=44.56 E-value=70 Score=20.54 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=28.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhhhh
Q 030419 128 KRLCALYQEQLTTFMKVVEVHSDHLSKKVQNVINNLKEFESIEKE 172 (177)
Q Consensus 128 ~k~~~~~r~~l~~~~k~~eeh~~~ls~~v~~~v~~~k~~e~~~~~ 172 (177)
.+-|++|-..|..+-.++ ++-++.++..++++|.+=..
T Consensus 12 DqFMeaYc~~L~kykeeL-------~~p~~EA~~f~~~ie~qL~~ 49 (52)
T PF03791_consen 12 DQFMEAYCDMLVKYKEEL-------QRPFQEAMEFCREIEQQLSS 49 (52)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 577888888876665554 56666899999999987443
No 17
>PF12441 DUF3680: Protein of unknown function (DUF3680) ; InterPro: IPR022148 This domain family is found in bacteria and archaea, and is approximately 40 amino acids in length.
Probab=43.80 E-value=21 Score=21.91 Aligned_cols=14 Identities=50% Similarity=0.862 Sum_probs=12.8
Q ss_pred ccCCHHHHHHHHHH
Q 030419 2 EFDSEEAAKIFYDE 15 (177)
Q Consensus 2 ~F~s~eeA~~FY~~ 15 (177)
.|.|++|+.+|+..
T Consensus 7 ~f~se~Ee~eFW~~ 20 (42)
T PF12441_consen 7 EFKSEEEEREFWDT 20 (42)
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999986
No 18
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=43.03 E-value=68 Score=22.64 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhhhh
Q 030419 133 LYQEQLTTFMKVVEVHSDHLSKKVQNVINNLKEFESIEKE 172 (177)
Q Consensus 133 ~~r~~l~~~~k~~eeh~~~ls~~v~~~v~~~k~~e~~~~~ 172 (177)
..-.+|++.|..+|+.+.+|...++.++++-|++-.+-++
T Consensus 33 s~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~ 72 (83)
T PF03670_consen 33 SMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQE 72 (83)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788999999999999999999999999987766544
No 19
>PF03037 KMP11: Kinetoplastid membrane protein 11; InterPro: IPR004132 Kinetoplastid membrane protein 11 is a major cell surface glycoprotein of the parasite Leishmania donovani. It stimulates T-cell proliferation and may play a role in the immunlogy of the dieases Leishmaniasis.; GO: 0006952 defense response, 0008284 positive regulation of cell proliferation
Probab=37.99 E-value=83 Score=21.79 Aligned_cols=37 Identities=22% Similarity=0.446 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 030419 129 RLCALYQEQLTTFMKVVEVHSDHLSKKVQNVINNLKE 165 (177)
Q Consensus 129 k~~~~~r~~l~~~~k~~eeh~~~ls~~v~~~v~~~k~ 165 (177)
-+++-+.+....|-+-|.||++..++++...-..||.
T Consensus 39 tlspemkehyekfe~miqehtdkfnkkm~ehsehfk~ 75 (90)
T PF03037_consen 39 TLSPEMKEHYEKFERMIQEHTDKFNKKMHEHSEHFKH 75 (90)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677778888888888899999999999887777764
No 20
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=37.14 E-value=1.1e+02 Score=19.27 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHH---HHHHHHHHhhhhhhhhhHHHHHHHHHHhh
Q 030419 114 DKKIQELTVELRNKKRLCALYQEQL---TTFMKVVEVHSDHLSKKVQNVINNLKEFE 167 (177)
Q Consensus 114 dkkI~EL~~el~~~~k~~~~~r~~l---~~~~k~~eeh~~~ls~~v~~~v~~~k~~e 167 (177)
+..|.+|...+..-+.+.-.....+ +.++..|+.+.......|......|+++-
T Consensus 3 d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~ 59 (63)
T PF05739_consen 3 DEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKAL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666555455444444333 66778888888888888888888887654
No 21
>PF09556 RE_HaeIII: HaeIII restriction endonuclease; InterPro: IPR019059 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the restriction endonuclease HaeIII, which recognises and cleaves the double-stranded sequence GG^CC.
Probab=33.94 E-value=2.1e+02 Score=24.88 Aligned_cols=80 Identities=20% Similarity=0.258 Sum_probs=51.2
Q ss_pred CCcEEEEEeccccCccCCCCCcccccC-----------C----hhHHHHHHHHHH---H----hhhhhhhhHHHHHHHHH
Q 030419 83 SGKWVITKFVKEHNHPLVVAPREARQT-----------M----DEKDKKIQELTV---E----LRNKKRLCALYQEQLTT 140 (177)
Q Consensus 83 ~g~W~V~~f~~eHNH~L~~~~~~~r~~-----------~----d~kdkkI~EL~~---e----l~~~~k~~~~~r~~l~~ 140 (177)
+-.|.| .+...|||.=+..++.++.+ + ++=...-.+|.. + -.-+.+--++|.=-|..
T Consensus 99 ~i~WEI-GlS~KHNH~AvKHSRLS~~lDFG~~W~gipcSq~Yw~~I~PiF~~L~~~k~~~~~W~~l~nKe~~vYiPLL~A 177 (300)
T PF09556_consen 99 NIEWEI-GLSCKHNHFAVKHSRLSHKLDFGKEWFGIPCSQNYWDEIKPIFDMLEEEKKEGTKWRELPNKEEDVYIPLLKA 177 (300)
T ss_pred CCcEEE-EEeeeccchhhhhcccCCcCCCchhhcCCCccHHHHHHHHHHHHHHHHHHHcCcchhhcccccccchHHHHHH
Confidence 346887 46788999888776655432 1 211122222222 2 11246788899999999
Q ss_pred HHHHHHhhhhhhhhhH-HHHHHHH
Q 030419 141 FMKVVEVHSDHLSKKV-QNVINNL 163 (177)
Q Consensus 141 ~~k~~eeh~~~ls~~v-~~~v~~~ 163 (177)
|++.+..+.+.-..+| +.+|.+|
T Consensus 178 F~~Ei~r~~~~~~~~iP~klveYL 201 (300)
T PF09556_consen 178 FIDEINRLYEKNKNDIPQKLVEYL 201 (300)
T ss_pred HHHHHHHHHhhccchhhHHHHHHH
Confidence 9999988777766667 5777665
No 22
>PF15299 ALS2CR8: Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
Probab=33.12 E-value=32 Score=28.27 Aligned_cols=19 Identities=37% Similarity=0.725 Sum_probs=15.7
Q ss_pred ccCCCCCcccccccEEEEE
Q 030419 61 VRKPRPSTREGCKAMIHVK 79 (177)
Q Consensus 61 ~~r~r~~tR~gC~A~i~v~ 79 (177)
..+..++.+.+|||.|.|+
T Consensus 69 ~~~~~~skK~~CPA~I~Ik 87 (225)
T PF15299_consen 69 RRRSKPSKKRDCPARIYIK 87 (225)
T ss_pred ccccccccCCCCCeEEEEE
Confidence 3556789999999999876
No 23
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=29.20 E-value=1.3e+02 Score=22.29 Aligned_cols=20 Identities=15% Similarity=0.208 Sum_probs=8.8
Q ss_pred hhhhhhhhhHHHHHHHHHHh
Q 030419 147 VHSDHLSKKVQNVINNLKEF 166 (177)
Q Consensus 147 eh~~~ls~~v~~~v~~~k~~ 166 (177)
|.+..|..--+++-..+.++
T Consensus 36 EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 36 EENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444
No 24
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors. Peptide chain release factors are important for protein synthesis since they direct the termination of translation in response to the peptide chain termination codons UAG and UAA. These are structurally distinct but both contain the PCRF domain [].; GO: 0016149 translation release factor activity, codon specific, 0006415 translational termination, 0005737 cytoplasm; PDB: 3D5A_X 3D5C_X 3MR8_V 3MS0_V 3F1G_X 3F1E_X 1ZBT_A 2IHR_1 2X9R_Y 2X9T_Y ....
Probab=28.85 E-value=2.3e+02 Score=20.60 Aligned_cols=37 Identities=30% Similarity=0.467 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhhhCceEEEeeeeeccCCCceEEEEEe
Q 030419 7 EAAKIFYDEYARRVGFVMRVMSCRRSERDGRILARRLG 44 (177)
Q Consensus 7 eeA~~FY~~YA~~~GF~vR~~~~~rs~~dg~i~~~~fv 44 (177)
.+-...|..||.+.||.+..-....+.. |.+....|.
T Consensus 66 ~~L~~MY~~~a~~~gw~~~~l~~~~~~~-~G~k~a~~~ 102 (115)
T PF03462_consen 66 EELFRMYQRYAERRGWKVEVLDYSPGEE-GGIKSATLE 102 (115)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEEE-SS-SSEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEEecCCCCc-cceeEEEEE
Confidence 3557899999999999998876543322 445554443
No 25
>PRK08179 prfH peptide chain release factor-like protein; Reviewed
Probab=27.43 E-value=1.8e+02 Score=23.71 Aligned_cols=43 Identities=12% Similarity=0.062 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhhhCceEEEeeeeeccCCCceEEEEEeecCCC
Q 030419 7 EAAKIFYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEG 49 (177)
Q Consensus 7 eeA~~FY~~YA~~~GF~vR~~~~~rs~~dg~i~~~~fvCsreG 49 (177)
++.+..|..||...||.+..-........|.+....|...-+|
T Consensus 20 ~~L~~my~~~a~~~g~~~~ii~~~~~~~~gg~ksa~~~i~G~~ 62 (200)
T PRK08179 20 AKALERLLKEAARQGVRVTVLETETGRYPDTLRSALVSLDGDN 62 (200)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCCCCCceEEEEEEEEccC
Confidence 4567889999999999999866543333355777777776665
No 26
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=27.11 E-value=1.6e+02 Score=22.29 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 030419 133 LYQEQLTTFMKVVEVHSDHLSKKVQNVINN 162 (177)
Q Consensus 133 ~~r~~l~~~~k~~eeh~~~ls~~v~~~v~~ 162 (177)
..-.||..+-..+..-+.||+.+|+++-.+
T Consensus 47 ~v~kql~~vs~~l~~tKkhLsqRId~vd~k 76 (126)
T PF07889_consen 47 SVSKQLEQVSESLSSTKKHLSQRIDRVDDK 76 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444444444444444443333
No 27
>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes. Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.
Probab=26.63 E-value=75 Score=19.59 Aligned_cols=18 Identities=33% Similarity=0.215 Sum_probs=15.6
Q ss_pred ccCCHHHHHHHHHHHhhh
Q 030419 2 EFDSEEAAKIFYDEYARR 19 (177)
Q Consensus 2 ~F~s~eeA~~FY~~YA~~ 19 (177)
.|+++++|..-|..++..
T Consensus 35 ~fg~~~eA~~~a~~~r~~ 52 (56)
T PF00847_consen 35 KFGFEEEAKRAAIEARKE 52 (56)
T ss_dssp CCCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 589999999999998875
No 28
>PF09929 DUF2161: Uncharacterized conserved protein (DUF2161); InterPro: IPR018679 This family of various hypothetical prokaryotic proteins has no known function.
Probab=26.52 E-value=2.1e+02 Score=21.53 Aligned_cols=64 Identities=13% Similarity=0.217 Sum_probs=38.9
Q ss_pred eccccCccCCCCCcccccCChhHHHHHHHHHHH-------hhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 030419 91 FVKEHNHPLVVAPREARQTMDEKDKKIQELTVE-------LRNKKRLCALYQEQLTTFMKVVEVHSDHLSKKVQ 157 (177)
Q Consensus 91 f~~eHNH~L~~~~~~~r~~~d~kdkkI~EL~~e-------l~~~~k~~~~~r~~l~~~~k~~eeh~~~ls~~v~ 157 (177)
++.-|.+|-...+... ..-.++.+.|.... +.-...+|-+||++.+.....+++|=..--.+|.
T Consensus 10 ~VeV~~dP~~~~pRk~---~krr~rLl~Ef~rR~GDpn~GGsTr~~imTAYRQ~Al~~A~~L~~~Gp~~~~~l~ 80 (118)
T PF09929_consen 10 RVEVLCDPGPYAPRKN---KKRRSRLLREFQRRSGDPNVGGSTRHKIMTAYRQDALRCAAALAEHGPSRPADLR 80 (118)
T ss_pred EEEEEeCCCCCCCCCC---HHHHHHHHHHHHHhcCCCCCCCccCCccchhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 6667777775555331 11122345555442 2223679999999999999888876555444443
No 29
>TIGR03072 release_prfH putative peptide chain release factor H. Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon.
Probab=25.20 E-value=2.1e+02 Score=23.31 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhhhCceEEEeeeeeccCCCceEEEEEeecCCCc
Q 030419 7 EAAKIFYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGY 50 (177)
Q Consensus 7 eeA~~FY~~YA~~~GF~vR~~~~~rs~~dg~i~~~~fvCsreG~ 50 (177)
++.+..|..||...|+.+..-....+...|.+....|..+-+|-
T Consensus 19 ~~L~~my~~~a~~~g~~~eii~~~~~~~~gg~ksa~~~i~G~~a 62 (200)
T TIGR03072 19 AKALERLTREAAARGVRVEVLEQEPGEVPGTLRSALVSLDGEAA 62 (200)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCCCCCceEEEEEEEEccCH
Confidence 46678899999999999998665433333557777777776663
No 30
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=24.16 E-value=2.5e+02 Score=19.48 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=16.9
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhh
Q 030419 117 IQELTVELRNKKRLCALYQEQLTTFMKVVEVH 148 (177)
Q Consensus 117 I~EL~~el~~~~k~~~~~r~~l~~~~k~~eeh 148 (177)
+..|..+|....-+-+.-++.|..+..+|+..
T Consensus 6 L~~L~~eL~~~~~ld~~~~~~L~~l~~dIe~~ 37 (85)
T PF14357_consen 6 LEKLHQELEQNPPLDEETRAELSSLDDDIEAQ 37 (85)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34455555444445555556666666565543
No 31
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=24.07 E-value=1.8e+02 Score=21.66 Aligned_cols=45 Identities=18% Similarity=0.250 Sum_probs=28.9
Q ss_pred ccCccCCCCCcccccCChhHHHHHHHHHHHhhh-hhhhhHHHHHHH
Q 030419 94 EHNHPLVVAPREARQTMDEKDKKIQELTVELRN-KKRLCALYQEQL 138 (177)
Q Consensus 94 eHNH~L~~~~~~~r~~~d~kdkkI~EL~~el~~-~~k~~~~~r~~l 138 (177)
+.+||+.++.+..-..+|..+..-.+|...|.. +.+-.+..+..|
T Consensus 9 d~~hPv~~~~~~~V~~LD~~~~le~~ls~~Lpadp~qA~~~~~~rl 54 (114)
T PF07511_consen 9 DSAHPVQAPAGVRVYELDAPERLEAELSAGLPADPQQAEAQARQRL 54 (114)
T ss_pred CCCCCCCCCCCceEEEcCcHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 578999865554444568888777888887765 344444444444
No 32
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=23.94 E-value=2.3e+02 Score=24.18 Aligned_cols=54 Identities=19% Similarity=0.253 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhh
Q 030419 115 KKIQELTVELRNKKRLCALYQEQLTTFMKVVEVHSDHLSKKVQNVINNLKEFES 168 (177)
Q Consensus 115 kkI~EL~~el~~~~k~~~~~r~~l~~~~k~~eeh~~~ls~~v~~~v~~~k~~e~ 168 (177)
.+|..-.+||.+..++-.+.+.....|+...|..-.+|..=-+.-+..||.|+-
T Consensus 197 ~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~y 250 (267)
T PF10234_consen 197 AKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDY 250 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 577788889999888889999999999999888888888888888888877653
No 33
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=23.86 E-value=2e+02 Score=18.27 Aligned_cols=34 Identities=29% Similarity=0.354 Sum_probs=27.7
Q ss_pred ccCCHHHHHHHHHHHhhhh-CceEEEeeeeeccCCCceEE
Q 030419 2 EFDSEEAAKIFYDEYARRV-GFVMRVMSCRRSERDGRILA 40 (177)
Q Consensus 2 ~F~s~eeA~~FY~~YA~~~-GF~vR~~~~~rs~~dg~i~~ 40 (177)
.|+|.++|.+.=...|+.. |=.+.+. ..||.|-.
T Consensus 24 ~~~Tk~eAi~~Ar~~a~~~~~~el~Ih-----~~dG~i~~ 58 (62)
T PF09954_consen 24 TFDTKAEAIEAARELAKNQGGGELIIH-----GRDGKIRE 58 (62)
T ss_pred ccCcHHHHHHHHHHHHHhCCCcEEEEE-----CCCCeEEE
Confidence 6999999999999999997 7677765 35787753
No 34
>PF01672 Plasmid_parti: Putative plasmid partition protein; InterPro: IPR002596 This family consists of conserved hypothetical proteins from Borrelia burgdorferi (Lyme disease spirochete) , some of which are putative plasmid partition proteins [].
Probab=22.61 E-value=40 Score=23.89 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhhhCce
Q 030419 7 EAAKIFYDEYARRVGFV 23 (177)
Q Consensus 7 eeA~~FY~~YA~~~GF~ 23 (177)
+|+|+||..=|+.+||-
T Consensus 59 qEsYdFyKkn~Kft~Fl 75 (85)
T PF01672_consen 59 QESYDFYKKNAKFTSFL 75 (85)
T ss_pred hHHHHHHHhchHHHHHH
Confidence 57799999999999985
No 35
>PF07011 DUF1313: Protein of unknown function (DUF1313); InterPro: IPR009741 This family consists of several hypothetical plant proteins of around 100 residues in length. The function of this family is unknown.
Probab=22.01 E-value=1.6e+02 Score=20.99 Aligned_cols=48 Identities=29% Similarity=0.433 Sum_probs=31.2
Q ss_pred cCccCCCCCcccccCChhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 030419 95 HNHPLVVAPREARQTMDEKDKKIQELTVELRNKKRLCALYQEQLTTFMKVVEVHSD 150 (177)
Q Consensus 95 HNH~L~~~~~~~r~~~d~kdkkI~EL~~el~~~~k~~~~~r~~l~~~~k~~eeh~~ 150 (177)
+||+--.|+...|.. ..|+||.... .++++.|..--.+|-+.++.+.+
T Consensus 34 qNHeSr~PdnL~RNV-----~LIrELN~NI---~rVv~lY~dLs~sFs~~~~~~~~ 81 (87)
T PF07011_consen 34 QNHESRIPDNLSRNV-----GLIRELNGNI---SRVVDLYSDLSSSFSKSVEQSSE 81 (87)
T ss_pred hcccccCCchhhHhH-----HHHHHHHhhH---HHHHHHHHHHhHHHHHHHhcccc
Confidence 344444444443333 3677776654 78999999998898888765544
No 36
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=21.77 E-value=1.3e+02 Score=18.81 Aligned_cols=29 Identities=21% Similarity=0.508 Sum_probs=18.7
Q ss_pred HHhhhhhhhhhHHHHHHHHHHhhhhhhhh
Q 030419 145 VEVHSDHLSKKVQNVINNLKEFESIEKEL 173 (177)
Q Consensus 145 ~eeh~~~ls~~v~~~v~~~k~~e~~~~~~ 173 (177)
++||-.....+|++|=.-+.+||.+.+.+
T Consensus 10 Lqe~~d~IEqkiedid~qIaeLe~KR~~L 38 (46)
T PF08946_consen 10 LQEHYDNIEQKIEDIDEQIAELEAKRQRL 38 (46)
T ss_dssp -----THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Confidence 45677777888888888888888776544
No 37
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=20.70 E-value=4.4e+02 Score=21.88 Aligned_cols=57 Identities=11% Similarity=0.226 Sum_probs=36.8
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhhhhh
Q 030419 117 IQELTVELRNKKRLCALYQEQLTTFMKVVEVHSDHLSKKVQNVINNLKEFESIEKEL 173 (177)
Q Consensus 117 I~EL~~el~~~~k~~~~~r~~l~~~~k~~eeh~~~ls~~v~~~v~~~k~~e~~~~~~ 173 (177)
+..+...+....+-+..-++.....++.+.+..++...++..+.+.|-+||.+--.+
T Consensus 170 leK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~~~m~~~~~~~Q~lEe~Ri~~ 226 (258)
T cd07655 170 VKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYMEDMEQVFDKCQEFEEKRLDF 226 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333444444444455556666677889999999999999999875443
No 38
>PHA02122 hypothetical protein
Probab=20.63 E-value=1.6e+02 Score=19.42 Aligned_cols=33 Identities=30% Similarity=0.550 Sum_probs=26.8
Q ss_pred cccccEEEEEEccCCcEEEEEeccccCccCCCC
Q 030419 70 EGCKAMIHVKFDKSGKWVITKFVKEHNHPLVVA 102 (177)
Q Consensus 70 ~gC~A~i~v~~~~~g~W~V~~f~~eHNH~L~~~ 102 (177)
.||.--|.-...++|--++..|...||-.|.-.
T Consensus 27 ~~~~~iiihs~~~~gd~v~vn~e~~~ng~l~i~ 59 (65)
T PHA02122 27 DGCENIIIHSFKDDGDEVIVNFELVVNGKLIIN 59 (65)
T ss_pred CCCCcEEEEeeccCCCEEEEEEEEEECCEEEEe
Confidence 577777776777789999999999999888643
No 39
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=20.56 E-value=2.7e+02 Score=24.24 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhhhh-----hhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhhhh
Q 030419 113 KDKKIQELTVELRNK-----KRLCALYQEQLTTFMKVVEVHSDHLSKKVQNVINNLKEFESIEKE 172 (177)
Q Consensus 113 kdkkI~EL~~el~~~-----~k~~~~~r~~l~~~~k~~eeh~~~ls~~v~~~v~~~k~~e~~~~~ 172 (177)
.|..+.+.......+ -...+++++-|..+|..+..+. +--|-.++++|++.+.++-+
T Consensus 76 ~~~~~~~sra~gkpPL~~~~~~r~p~w~~~L~alla~~~~~a---~~~~~a~ie~L~ka~~~el~ 137 (308)
T COG3058 76 TDARLEESRAQGKPPLDISVLPREPHWRKLLMALLAELKPEA---NAAALAAIEQLEKASEQELE 137 (308)
T ss_pred cHHHHHHHHhcCCCCccHhhcCCCcHHHHHHHHHHHhccccC---cHHHHHHHHHHHHhhHHHHH
Confidence 445666666654433 3356689999988888875554 36778888888888776543
No 40
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=20.10 E-value=5.1e+02 Score=21.49 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=26.6
Q ss_pred CcccccccEEEEEEcc--CCcEEEEEec---cccCccCCCCCc
Q 030419 67 STREGCKAMIHVKFDK--SGKWVITKFV---KEHNHPLVVAPR 104 (177)
Q Consensus 67 ~tR~gC~A~i~v~~~~--~g~W~V~~f~---~eHNH~L~~~~~ 104 (177)
.+--|++.=++|.+.+ +|.|.|+... ...+...+...+
T Consensus 124 ~~~~gr~fD~RvlvqK~~~G~W~vtg~~~Rva~~~~ivTN~~~ 166 (262)
T PF14398_consen 124 ATYDGRPFDFRVLVQKNGSGKWQVTGIVARVAKPGSIVTNLSQ 166 (262)
T ss_pred cccCCCeEEEEEEEEECCCCCEEEEEEEEEEcCCCCceeccCC
Confidence 4558888888888763 6899999884 455555555443
No 41
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=20.05 E-value=4.6e+02 Score=20.91 Aligned_cols=46 Identities=15% Similarity=0.280 Sum_probs=29.8
Q ss_pred HHHHHHHHhhhhhhhhHH-------HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 030419 116 KIQELTVELRNKKRLCAL-------YQEQLTTFMKVVEVHSDHLSKKVQNVINNLKE 165 (177)
Q Consensus 116 kI~EL~~el~~~~k~~~~-------~r~~l~~~~k~~eeh~~~ls~~v~~~v~~~k~ 165 (177)
.+.+....|.-+.++|+. +|+||.... ..++.|+.|++.+-..+..
T Consensus 61 dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~----~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 61 DLEEALIRLEEEQQRSEELAQVNALLREQLEQAR----KANEALQEDLQKLTQDWER 113 (182)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 344555666666777776 666664333 4578888888877666655
Done!