Query 030419
Match_columns 177
No_of_seqs 183 out of 524
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 21:51:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030419.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030419hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 93.0 0.14 4.8E-06 34.6 4.6 31 70-100 43-74 (76)
2 1wj2_A Probable WRKY transcrip 92.0 0.19 6.4E-06 34.2 4.1 31 70-100 46-77 (78)
3 2rpr_A Flywch-type zinc finger 79.7 1 3.5E-05 30.4 2.3 23 70-98 50-72 (87)
4 3lo3_A Uncharacterized conserv 53.7 3.9 0.00013 28.0 0.8 25 1-25 58-82 (94)
5 4aj5_A SKA1, spindle and kinet 51.4 15 0.0005 25.4 3.4 41 123-163 51-91 (91)
6 2fiu_A Conserved hypothetical 50.5 4.6 0.00016 27.9 0.8 25 1-25 59-83 (99)
7 1p9i_A Cortexillin I/GCN4 hybr 50.3 17 0.00057 19.6 2.8 28 136-163 2-29 (31)
8 2lju_A Putative oxidoreductase 49.6 9.7 0.00033 27.1 2.4 24 1-28 64-87 (108)
9 1a92_A Delta antigen; leucine 43.6 16 0.00054 22.3 2.3 24 149-172 16-39 (50)
10 4gkw_A Spindle assembly abnorm 39.8 1E+02 0.0035 22.8 6.6 54 115-172 98-151 (167)
11 3c3f_A Alpha/beta peptide with 38.2 23 0.00079 19.9 2.2 24 148-171 2-25 (34)
12 2jya_A AGR_C_3324P, uncharacte 37.0 15 0.00051 26.1 1.7 24 1-28 56-79 (106)
13 3bsu_A Ribonuclease H1, RNAse 36.1 18 0.00061 22.2 1.8 13 2-14 37-49 (53)
14 2v66_B Nuclear distribution pr 35.4 1.2E+02 0.004 21.5 7.5 33 142-174 37-69 (111)
15 2ayu_A Nucleosome assembly pro 34.5 9.4 0.00032 33.3 0.3 52 120-171 56-107 (417)
16 2l69_A Rossmann 2X3 fold prote 34.3 30 0.001 24.3 2.9 28 2-29 7-34 (134)
17 3ct8_A Protein BH2160, putativ 32.9 44 0.0015 23.3 3.8 24 4-27 29-52 (146)
18 1gk7_A Vimentin; intermediate 32.6 45 0.0015 19.2 3.0 27 147-173 6-32 (39)
19 1kd8_A GABH AIV, GCN4 acid bas 31.6 32 0.0011 19.6 2.2 24 148-171 2-25 (36)
20 1kd8_B GABH BLL, GCN4 acid bas 30.5 36 0.0012 19.4 2.2 24 148-171 2-25 (36)
21 2ke4_A CDC42-interacting prote 29.9 1.1E+02 0.0038 21.0 5.3 30 115-144 22-51 (98)
22 1lyp_A CAP18; lipopolysacchari 29.3 71 0.0024 17.2 4.1 29 134-162 2-30 (32)
23 1deq_A Fibrinogen (alpha chain 29.0 1.3E+02 0.0045 25.9 6.5 27 143-169 116-142 (390)
24 3hhl_A RPA0582; alpha-beta-bar 26.8 18 0.00063 26.6 0.8 27 1-27 93-119 (143)
25 1uo4_A General control protein 24.2 57 0.002 18.3 2.3 23 149-171 3-25 (34)
26 2lkp_A Transcriptional regulat 22.9 1.7E+02 0.0059 19.4 5.5 8 94-101 1-8 (119)
27 3dom_A RNA polymerase II trans 22.8 99 0.0034 21.8 3.9 40 2-52 56-95 (108)
28 3s84_A Apolipoprotein A-IV; fo 21.7 28 0.00095 28.4 1.0 25 138-162 247-271 (273)
29 3s4r_A Vimentin; alpha-helix, 21.2 58 0.002 22.1 2.4 14 145-158 28-41 (93)
30 3okq_A BUD site selection prot 21.0 2.6E+02 0.0087 20.6 6.1 61 105-168 7-75 (141)
31 2oxj_A Hybrid alpha/beta pepti 20.9 73 0.0025 17.8 2.3 24 148-171 2-25 (34)
32 1j34_C Coagulation factor IX; 20.8 50 0.0017 19.8 1.7 15 2-16 31-45 (46)
33 1gcc_A Ethylene responsive ele 20.5 64 0.0022 20.2 2.3 22 2-23 32-54 (63)
34 2bni_A General control protein 20.3 76 0.0026 17.8 2.3 23 148-170 2-24 (34)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=93.05 E-value=0.14 Score=34.61 Aligned_cols=31 Identities=29% Similarity=0.540 Sum_probs=26.4
Q ss_pred cccccEEEEEEc-cCCcEEEEEeccccCccCC
Q 030419 70 EGCKAMIHVKFD-KSGKWVITKFVKEHNHPLV 100 (177)
Q Consensus 70 ~gC~A~i~v~~~-~~g~W~V~~f~~eHNH~L~ 100 (177)
.||+|+-.|.+. +|+.-.++-...+|||++.
T Consensus 43 ~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 74 (76)
T 2ayd_A 43 PGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74 (76)
T ss_dssp TTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred CCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence 499999999876 4678888889999999874
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=92.01 E-value=0.19 Score=34.15 Aligned_cols=31 Identities=35% Similarity=0.519 Sum_probs=26.1
Q ss_pred cccccEEEEEEc-cCCcEEEEEeccccCccCC
Q 030419 70 EGCKAMIHVKFD-KSGKWVITKFVKEHNHPLV 100 (177)
Q Consensus 70 ~gC~A~i~v~~~-~~g~W~V~~f~~eHNH~L~ 100 (177)
.||+|+-.|... .|+.-+++-...+||||+.
T Consensus 46 ~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 77 (78)
T 1wj2_A 46 PGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77 (78)
T ss_dssp SSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence 499999999875 4677888889999999873
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=79.69 E-value=1 Score=30.44 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=16.3
Q ss_pred cccccEEEEEEccCCcEEEEEeccccCcc
Q 030419 70 EGCKAMIHVKFDKSGKWVITKFVKEHNHP 98 (177)
Q Consensus 70 ~gC~A~i~v~~~~~g~W~V~~f~~eHNH~ 98 (177)
.+|+|++..... + |. ....||||
T Consensus 50 ~kCrARi~T~~~--~---~~-~~~~HnH~ 72 (87)
T 2rpr_A 50 LGCRSRAITQGH--R---IM-VMRSHCHQ 72 (87)
T ss_dssp SCCCCEEEEETT--E---EE-ECSCCSSC
T ss_pred CCCCEEEEEcCC--C---EE-CCCCcCCC
Confidence 389999988742 2 22 56789995
No 4
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=53.70 E-value=3.9 Score=28.00 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=18.5
Q ss_pred CccCCHHHHHHHHHHHhhhhCceEE
Q 030419 1 MEFDSEEAAKIFYDEYARRVGFVMR 25 (177)
Q Consensus 1 M~F~s~eeA~~FY~~YA~~~GF~vR 25 (177)
++|+|.++|..||++=+.+.--..|
T Consensus 58 ieFps~~aa~a~y~SpeYq~a~~~R 82 (94)
T 3lo3_A 58 LEFPSREDAYNWYHSEEYQALISTR 82 (94)
T ss_dssp EEESSHHHHHHHHHSHHHHTTHHHH
T ss_pred EECCCHHHHHHHHCCHHHHHHHHHH
Confidence 4799999999999975555443333
No 5
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=51.44 E-value=15 Score=25.37 Aligned_cols=41 Identities=29% Similarity=0.284 Sum_probs=23.5
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 030419 123 ELRNKKRLCALYQEQLTTFMKVVEVHSDHLSKKVQNVINNL 163 (177)
Q Consensus 123 el~~~~k~~~~~r~~l~~~~k~~eeh~~~ls~~v~~~v~~~ 163 (177)
+|-.+-..+-.||+++..=+|.+++-.+.=.+||+++.+++
T Consensus 51 eLLn~~E~eV~~Qe~~~~sLKEL~~s~e~d~kdv~HLkeni 91 (91)
T 4aj5_A 51 ELLNKLELEIQYQEQTNNSLKELCESLEEDYKDIEHLKENV 91 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34445557778888888888888888888888888776653
No 6
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=50.50 E-value=4.6 Score=27.85 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=18.3
Q ss_pred CccCCHHHHHHHHHHHhhhhCceEE
Q 030419 1 MEFDSEEAAKIFYDEYARRVGFVMR 25 (177)
Q Consensus 1 M~F~s~eeA~~FY~~YA~~~GF~vR 25 (177)
++|+|.++|..||++=+...--..|
T Consensus 59 ieFpS~~aa~~~~~s~~Yq~a~~~R 83 (99)
T 2fiu_A 59 IEFPSVQHAIDCYNSPEYQAAAKIR 83 (99)
T ss_dssp EEESSHHHHHHHHHSHHHHHHHHHH
T ss_pred EECCCHHHHHHHHcCHHHHHHHHHH
Confidence 3799999999999975554433333
No 7
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=50.34 E-value=17 Score=19.57 Aligned_cols=28 Identities=21% Similarity=0.503 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 030419 136 EQLTTFMKVVEVHSDHLSKKVQNVINNL 163 (177)
Q Consensus 136 ~~l~~~~k~~eeh~~~ls~~v~~~v~~~ 163 (177)
.||+.++..+|-.+.+|..+|+.++-.+
T Consensus 2 dqlnallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677778888888888888888887654
No 8
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=49.61 E-value=9.7 Score=27.12 Aligned_cols=24 Identities=25% Similarity=0.312 Sum_probs=19.3
Q ss_pred CccCCHHHHHHHHHHHhhhhCceEEEee
Q 030419 1 MEFDSEEAAKIFYDEYARRVGFVMRVMS 28 (177)
Q Consensus 1 M~F~s~eeA~~FY~~YA~~~GF~vR~~~ 28 (177)
|.|+|.|+|.. ||.+.|..-.+..
T Consensus 64 L~F~skE~Aia----yAek~G~~y~V~e 87 (108)
T 2lju_A 64 LSFTTRELAIA----YAVAHKIDYTVLQ 87 (108)
T ss_dssp EEESSHHHHHH----HHHHTTCEEEEEC
T ss_pred EecCCHHHHHH----HHHHcCCEEEEec
Confidence 47999999975 7889998877653
No 9
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=43.59 E-value=16 Score=22.31 Aligned_cols=24 Identities=13% Similarity=0.266 Sum_probs=20.6
Q ss_pred hhhhhhhHHHHHHHHHHhhhhhhh
Q 030419 149 SDHLSKKVQNVINNLKEFESIEKE 172 (177)
Q Consensus 149 ~~~ls~~v~~~v~~~k~~e~~~~~ 172 (177)
.+.|.++...+-..+|+||.++|=
T Consensus 16 ~eeler~lrk~kk~iKklEdeNPW 39 (50)
T 1a92_A 16 LEELERDLRKLKKKIKKLEEDNPW 39 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHhhhccCCc
Confidence 567888899999999999999873
No 10
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=39.85 E-value=1e+02 Score=22.78 Aligned_cols=54 Identities=17% Similarity=0.314 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhhhh
Q 030419 115 KKIQELTVELRNKKRLCALYQEQLTTFMKVVEVHSDHLSKKVQNVINNLKEFESIEKE 172 (177)
Q Consensus 115 kkI~EL~~el~~~~k~~~~~r~~l~~~~k~~eeh~~~ls~~v~~~v~~~k~~e~~~~~ 172 (177)
++++||.+-|.-..-+.+...+-++.+.|.+|.. -.+.+.++++|-.|.-++..
T Consensus 98 RKLrELEADLKEKDsMVe~LT~TiG~LrKELEdE----klK~~E~MdSFE~LkvENE~ 151 (167)
T 4gkw_A 98 RKLGELEADLKEKDSMVESLTETIGILRKELENE----KLKAAENMDSFEKLSMENEN 151 (167)
T ss_dssp HHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhHh
Confidence 5677888888777777778888888888887654 45778899999887666543
No 11
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=38.16 E-value=23 Score=19.90 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=18.2
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhhh
Q 030419 148 HSDHLSKKVQNVINNLKEFESIEK 171 (177)
Q Consensus 148 h~~~ls~~v~~~v~~~k~~e~~~~ 171 (177)
.+.+|..+|++++..-.+||.+..
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~ 25 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXA 25 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHH
Confidence 456777888888888888887753
No 12
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=36.97 E-value=15 Score=26.08 Aligned_cols=24 Identities=38% Similarity=0.702 Sum_probs=19.4
Q ss_pred CccCCHHHHHHHHHHHhhhhCceEEEee
Q 030419 1 MEFDSEEAAKIFYDEYARRVGFVMRVMS 28 (177)
Q Consensus 1 M~F~s~eeA~~FY~~YA~~~GF~vR~~~ 28 (177)
|.|+|.|+|.. ||.+.|..-.+..
T Consensus 56 L~F~skE~Aia----yAek~G~~y~V~e 79 (106)
T 2jya_A 56 LTFETQEQAEA----YAQRKGIEYRVIL 79 (106)
T ss_dssp EEESSHHHHHH----HHHHHTCEEEECC
T ss_pred EecCCHHHHHH----HHHHcCCEEEEeC
Confidence 47999999975 6889998877654
No 13
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=36.07 E-value=18 Score=22.18 Aligned_cols=13 Identities=31% Similarity=0.498 Sum_probs=11.6
Q ss_pred ccCCHHHHHHHHH
Q 030419 2 EFDSEEAAKIFYD 14 (177)
Q Consensus 2 ~F~s~eeA~~FY~ 14 (177)
.|.|.+||.+|+.
T Consensus 37 ~F~t~~eA~~~l~ 49 (53)
T 3bsu_A 37 KFATEDEAWAFVR 49 (53)
T ss_dssp EESSHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 5999999999985
No 14
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=35.43 E-value=1.2e+02 Score=21.51 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=21.5
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHhhhhhhhhh
Q 030419 142 MKVVEVHSDHLSKKVQNVINNLKEFESIEKELS 174 (177)
Q Consensus 142 ~k~~eeh~~~ls~~v~~~v~~~k~~e~~~~~~~ 174 (177)
.+.++.....|-..-+.+..++|+||..+-++.
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLE 69 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE 69 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 344556666666666677777777777766554
No 15
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=34.51 E-value=9.4 Score=33.32 Aligned_cols=52 Identities=21% Similarity=0.105 Sum_probs=29.0
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhhh
Q 030419 120 LTVELRNKKRLCALYQEQLTTFMKVVEVHSDHLSKKVQNVINNLKEFESIEK 171 (177)
Q Consensus 120 L~~el~~~~k~~~~~r~~l~~~~k~~eeh~~~ls~~v~~~v~~~k~~e~~~~ 171 (177)
++..+.....+.++.+..|..+.-...+....|...|+..|..|+.|+.+-.
T Consensus 56 ~~~~~~~~p~~~~~~~~~l~~l~~~~~~~i~sLp~~v~~rI~aLk~lQ~e~~ 107 (417)
T 2ayu_A 56 EEDILANQPLLLQSIQDRLGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELF 107 (417)
T ss_dssp --------------CCSTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHhhccccchhhcCCHHHHHHHHHHHHHHHHHH
Confidence 4444444455666666667666666666778889999999999998877643
No 16
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=34.29 E-value=30 Score=24.28 Aligned_cols=28 Identities=18% Similarity=0.428 Sum_probs=24.7
Q ss_pred ccCCHHHHHHHHHHHhhhhCceEEEeee
Q 030419 2 EFDSEEAAKIFYDEYARRVGFVMRVMSC 29 (177)
Q Consensus 2 ~F~s~eeA~~FY~~YA~~~GF~vR~~~~ 29 (177)
+|.+.||...=+..--+..||.||.-.+
T Consensus 7 vfstdeetlrkfkdiikkngfkvrtvrs 34 (134)
T 2l69_A 7 VFSTDEETLRKFKDIIKKNGFKVRTVRS 34 (134)
T ss_dssp ECCCCHHHHHHHHHHHHHTTCEEEEECS
T ss_pred EEeCCHHHHHHHHHHHHhcCceEEEecC
Confidence 6899999999999999999999997654
No 17
>3ct8_A Protein BH2160, putative glyoxalase; NP_243026.1, glyoxalase/bleomycin resis protein/dioxygenase superfamily, structural genomics; HET: UNL; 2.10A {Bacillus halodurans c-125}
Probab=32.91 E-value=44 Score=23.26 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHhhhhCceEEEe
Q 030419 4 DSEEAAKIFYDEYARRVGFVMRVM 27 (177)
Q Consensus 4 ~s~eeA~~FY~~YA~~~GF~vR~~ 27 (177)
.+.++|..||..+....||.+...
T Consensus 29 ~Dl~~a~~FY~~~~~~LG~~~~~~ 52 (146)
T 3ct8_A 29 DHLEESIAFWDWLLGELGYEDYQS 52 (146)
T ss_dssp SCHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHHhhhhhCCCEEEEe
Confidence 468999999999999999988643
No 18
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=32.64 E-value=45 Score=19.17 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=19.4
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhhhhhh
Q 030419 147 VHSDHLSKKVQNVINNLKEFESIEKEL 173 (177)
Q Consensus 147 eh~~~ls~~v~~~v~~~k~~e~~~~~~ 173 (177)
+.++.|+-..-..++.||.||.++...
T Consensus 6 e~mq~LNdrlAsyidkVR~LE~~N~~L 32 (39)
T 1gk7_A 6 VELQELNDRFANYIDKVRFLEQQNKIL 32 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777788888888877654
No 19
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=31.62 E-value=32 Score=19.56 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=16.8
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhhh
Q 030419 148 HSDHLSKKVQNVINNLKEFESIEK 171 (177)
Q Consensus 148 h~~~ls~~v~~~v~~~k~~e~~~~ 171 (177)
.+.+|..+|+.++..--+||.+..
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~ 25 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVA 25 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHH
Confidence 355677778888877777777643
No 20
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=30.45 E-value=36 Score=19.35 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=16.5
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhhh
Q 030419 148 HSDHLSKKVQNVINNLKEFESIEK 171 (177)
Q Consensus 148 h~~~ls~~v~~~v~~~k~~e~~~~ 171 (177)
.+.+|..+|++++..--+||.+..
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~ 25 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVA 25 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHH
Confidence 345667777777777777776643
No 21
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=29.92 E-value=1.1e+02 Score=21.00 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 030419 115 KKIQELTVELRNKKRLCALYQEQLTTFMKV 144 (177)
Q Consensus 115 kkI~EL~~el~~~~k~~~~~r~~l~~~~k~ 144 (177)
++|.+|+.++..+.+-.++...+...+-++
T Consensus 22 ~Ki~el~~ei~ke~~~regl~Km~~vY~~n 51 (98)
T 2ke4_A 22 QQLEERSRELQKEVDQREALKKMKDVYEKT 51 (98)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 468888888877766666666665554433
No 22
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=29.31 E-value=71 Score=17.15 Aligned_cols=29 Identities=14% Similarity=0.382 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 030419 134 YQEQLTTFMKVVEVHSDHLSKKVQNVINN 162 (177)
Q Consensus 134 ~r~~l~~~~k~~eeh~~~ls~~v~~~v~~ 162 (177)
.+..|..|.+.|.|....+-.+||-++-.
T Consensus 2 lrkrlrkfrnkikeklkkigqkiqgllpk 30 (32)
T 1lyp_A 2 LRKRLRKFRNKIKEKLKKIGQKIQGLLPK 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 35677788888888888888888877644
No 23
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=29.00 E-value=1.3e+02 Score=25.89 Aligned_cols=27 Identities=11% Similarity=0.191 Sum_probs=18.9
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHhhhh
Q 030419 143 KVVEVHSDHLSKKVQNVINNLKEFESI 169 (177)
Q Consensus 143 k~~eeh~~~ls~~v~~~v~~~k~~e~~ 169 (177)
.++|.|...|..+|.+.|.++|-|+.-
T Consensus 116 ~eLe~~i~~lk~~V~~q~~~ir~Lq~~ 142 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQVQRINLLQKN 142 (390)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 457777777777777777777776654
No 24
>3hhl_A RPA0582; alpha-beta-barrel, structural genomics, PSI-2, protein struc initiative, reductive methylation; HET: MLY MLZ PGE 2PE PE8 1PE PG4; 2.65A {Rhodopseudomonas palustris} PDB: 3hhl_B* 3hhl_C* 3dca_A
Probab=26.82 E-value=18 Score=26.61 Aligned_cols=27 Identities=19% Similarity=0.060 Sum_probs=20.1
Q ss_pred CccCCHHHHHHHHHHHhhhhCceEEEe
Q 030419 1 MEFDSEEAAKIFYDEYARRVGFVMRVM 27 (177)
Q Consensus 1 M~F~s~eeA~~FY~~YA~~~GF~vR~~ 27 (177)
++|+|.++|..||++=+.+.--..|..
T Consensus 93 ieFPS~~aa~a~y~SpeYq~a~~~R~~ 119 (143)
T 3hhl_A 93 AEYPSVAAFVEMIRDPVYREAVKHRQA 119 (143)
T ss_dssp EEESCHHHHHHHHHCHHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHcCHHHHHHHHHHHH
Confidence 479999999999998666554444543
No 25
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=24.18 E-value=57 Score=18.30 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=16.9
Q ss_pred hhhhhhhHHHHHHHHHHhhhhhh
Q 030419 149 SDHLSKKVQNVINNLKEFESIEK 171 (177)
Q Consensus 149 ~~~ls~~v~~~v~~~k~~e~~~~ 171 (177)
+.+|..+|+.++..--+||+|..
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~ 25 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELA 25 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHH
Confidence 45677788888888888877653
No 26
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=22.92 E-value=1.7e+02 Score=19.42 Aligned_cols=8 Identities=13% Similarity=-0.226 Sum_probs=5.9
Q ss_pred ccCccCCC
Q 030419 94 EHNHPLVV 101 (177)
Q Consensus 94 eHNH~L~~ 101 (177)
+|||.+.+
T Consensus 1 ~~~~~~~~ 8 (119)
T 2lkp_A 1 GHGVEGRN 8 (119)
T ss_dssp CCCCCCCC
T ss_pred CCCccCCC
Confidence 68999833
No 27
>3dom_A RNA polymerase II transcription factor B subunit; protein-protein complex, heterodimer, beta-alpha-beta split, strand addition; 2.60A {Saccharomyces cerevisiae}
Probab=22.82 E-value=99 Score=21.83 Aligned_cols=40 Identities=18% Similarity=0.394 Sum_probs=31.1
Q ss_pred ccCCHHHHHHHHHHHhhhhCceEEEeeeeeccCCCceEEEEEeecCCCccc
Q 030419 2 EFDSEEAAKIFYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCV 52 (177)
Q Consensus 2 ~F~s~eeA~~FY~~YA~~~GF~vR~~~~~rs~~dg~i~~~~fvCsreG~~~ 52 (177)
.|.|.++ |+--..||+..|.-+=.+..+ +.|+.+.+|...
T Consensus 56 dF~s~~e-fe~v~~yA~e~gvLlW~d~~k----------r~~~Vs~egh~~ 95 (108)
T 3dom_A 56 DFETSQE-YNLLSKYAQDIGVLLWKDDKK----------KKFFISKEGNSQ 95 (108)
T ss_dssp CCSCHHH-HHHHHHHHHHHTCEEEEEGGG----------TEEEEEGGGHHH
T ss_pred cCCCHHH-HHHHHHHHHHcCeEEEecCCc----------cEEEEeccchHH
Confidence 3888655 889999999999998665443 368999998754
No 28
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=21.69 E-value=28 Score=28.39 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=1.4
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHH
Q 030419 138 LTTFMKVVEVHSDHLSKKVQNVINN 162 (177)
Q Consensus 138 l~~~~k~~eeh~~~ls~~v~~~v~~ 162 (177)
|+.++.++++|..++.+|+++=|++
T Consensus 247 l~~~~~~~~~~~~~~~~d~~~~~~~ 271 (273)
T 3s84_A 247 LGPHAGDVEGHLSFLEKDLRDKVNS 271 (273)
T ss_dssp HSCC---------------------
T ss_pred hCcchhhHHhhhhHHHHHHHHHhhc
Confidence 3333334555555555555554444
No 29
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=21.19 E-value=58 Score=22.14 Aligned_cols=14 Identities=14% Similarity=0.268 Sum_probs=7.2
Q ss_pred HHhhhhhhhhhHHH
Q 030419 145 VEVHSDHLSKKVQN 158 (177)
Q Consensus 145 ~eeh~~~ls~~v~~ 158 (177)
+|.++..|..+|+.
T Consensus 28 LEqqN~~Le~~i~~ 41 (93)
T 3s4r_A 28 LEQQNKILLAELEQ 41 (93)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555543
No 30
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=20.96 E-value=2.6e+02 Score=20.63 Aligned_cols=61 Identities=16% Similarity=0.237 Sum_probs=38.3
Q ss_pred ccccCChhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH--------hhhhhhhhhHHHHHHHHHHhhh
Q 030419 105 EARQTMDEKDKKIQELTVELRNKKRLCALYQEQLTTFMKVVE--------VHSDHLSKKVQNVINNLKEFES 168 (177)
Q Consensus 105 ~~r~~~d~kdkkI~EL~~el~~~~k~~~~~r~~l~~~~k~~e--------eh~~~ls~~v~~~v~~~k~~e~ 168 (177)
+.|..++...+++.+-+..|. ...+-.+..+..+.+|+- .+++.++++|+.+-..|+.|+.
T Consensus 7 ~~R~y~~~~k~kL~~~sd~Lv---tkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~ 75 (141)
T 3okq_A 7 SNRMYMEKSQTELGDLSDTLL---SKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQE 75 (141)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHhHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556655555554 234555666666667754 4777888888888777777764
No 31
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=20.93 E-value=73 Score=17.85 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=16.0
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhhh
Q 030419 148 HSDHLSKKVQNVINNLKEFESIEK 171 (177)
Q Consensus 148 h~~~ls~~v~~~v~~~k~~e~~~~ 171 (177)
.+.+|..+|+.++..=.+||.+..
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~ 25 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVX 25 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHH
Confidence 345667777777777777776643
No 32
>1j34_C Coagulation factor IX; magnesium ION, calcium ION, GLA domain, protein binding/blood clotting complex; HET: CGU; 1.55A {Bos taurus} SCOP: g.32.1.1 PDB: 1j35_C* 1cfh_A 1cfi_A* 1mgx_A 1iod_G*
Probab=20.82 E-value=50 Score=19.83 Aligned_cols=15 Identities=27% Similarity=0.687 Sum_probs=11.9
Q ss_pred ccCCHHHHHHHHHHH
Q 030419 2 EFDSEEAAKIFYDEY 16 (177)
Q Consensus 2 ~F~s~eeA~~FY~~Y 16 (177)
+|++.+....||..|
T Consensus 31 vFe~~~~T~~FW~~Y 45 (46)
T 1j34_C 31 VFENTEKTTEFWKQY 45 (46)
T ss_dssp HHCCHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHhh
Confidence 477788888888887
No 33
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=20.47 E-value=64 Score=20.21 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=17.5
Q ss_pred ccCCHHHHHHHHHHHhhh-hCce
Q 030419 2 EFDSEEAAKIFYDEYARR-VGFV 23 (177)
Q Consensus 2 ~F~s~eeA~~FY~~YA~~-~GF~ 23 (177)
.|+|+|||-.-|+.-|.. .|..
T Consensus 32 tf~T~eeAA~AyD~Aa~~~~G~~ 54 (63)
T 1gcc_A 32 TFETAEDAALAYDRAAFRMRGSR 54 (63)
T ss_dssp EESSHHHHHHHHHHHHHHHHSSC
T ss_pred eCCCHHHHHHHHHHHHHHhcCcc
Confidence 599999999999988874 3543
No 34
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=20.32 E-value=76 Score=17.78 Aligned_cols=23 Identities=4% Similarity=0.141 Sum_probs=14.2
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhh
Q 030419 148 HSDHLSKKVQNVINNLKEFESIE 170 (177)
Q Consensus 148 h~~~ls~~v~~~v~~~k~~e~~~ 170 (177)
.+.+|..+|+.++..=.+||.+.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV 24 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNEL 24 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHH
Confidence 34556667777776666666654
Done!