BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030420
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TR3|A Chain A, Structure Of A Bola Protein Homologue From Coxiella
Burnetii
pdb|3TR3|B Chain B, Structure Of A Bola Protein Homologue From Coxiella
Burnetii
Length = 82
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 116 VKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAEAD 174
V A GDG H V+ FEGQ+A+ R R+VY A+ QS +HA+ S+ T TP E +
Sbjct: 23 VISAEGDGHHFEAVVLCPTFEGQTALTRHRLVYNALGSHXQSDIHAL-SLKTYTPDEYE 80
>pdb|1V60|A Chain A, Solution Structure Of Bola1 Protein From Mus Musculus
Length = 123
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 12/100 (12%)
Query: 80 FSTGATHVNDAGSIDPSRMASMENKIKEHLNAESVTVKD-------AYGDGRHVSIDVIA 132
S G+ AG ++ A++ K+++ L+ E + +++ G H + V++
Sbjct: 14 VSRGSAGSAAAGPVE----AAIRAKLEQALSPEVLELRNESGGHAVPAGSETHFRVAVVS 69
Query: 133 SAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAE 172
S FEG S + R R+V++A+ EEL VHA+ ++ KTPA+
Sbjct: 70 SRFEGMSPLQRHRLVHEALSEELAGPVHAL-AIQAKTPAQ 108
>pdb|2KZ0|A Chain A, Solution Structure Of A Bola Protein (Ech_0303) From
Ehrlichia Chaffeensis. Seattle Structural Genomics
Center For Infectious Disease Target Ehcha.10365.A
Length = 76
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 99 ASMENKIKEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAI 151
+ +E I+ +TV GD H SI VI+S F+G+S + + RM+YK +
Sbjct: 9 SQLELLIRNAFPEAEITVTSLVGDNNHYSIKVISSQFQGKSKLEQHRMIYKVL 61
>pdb|1XS3|A Chain A, Solution Structure Analysis Of The Xc975 Protein
Length = 80
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 122 DGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAEA 173
DG H V++ AF G++ + R RMVY + E + +HA+ + T TP EA
Sbjct: 30 DGVHFEATVVSPAFVGKAPLARHRMVYATLGELMGGAIHAL-QLKTLTPDEA 80
>pdb|2DHM|A Chain A, Solution Structure Of The Bola Protein From Escherichia
Coli
Length = 107
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 121 GDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAV 162
G H + +++ F G+ +NR RM+Y + EEL +TVHA+
Sbjct: 41 GSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHAL 82
>pdb|1NY8|A Chain A, Solution Structure Of Protein Yrba From Escherichia Coli:
Northeast Structural Genomics Consortium Target Er115
Length = 97
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 109 LNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEEL-QSTVHAVDSMTT 167
+NA S+ GDG H + + F+G S V +Q+ VY + E + + +HAV S+
Sbjct: 16 MNALSLQEVHVSGDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAV-SIKA 74
Query: 168 KTPAE 172
TPAE
Sbjct: 75 YTPAE 79
>pdb|3O2E|A Chain A, Crystal Structure Of A Bol-Like Protein From Babesia Bovis
Length = 105
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 95 PSRMAS---MENKIKEHLNAESVTVKD-AYGDGRHVSIDVIASAFEGQSAVNRQRMVYKA 150
P M S +E +++ L+ + + V D + G G + +++ FEG+ ++RQR+V A
Sbjct: 19 PGSMVSKSIVEERLRSMLSPQFLKVTDNSGGCGAAFNAYIVSQQFEGKGLLDRQRLVNSA 78
Query: 151 IWEELQSTVHAVDSMTTKTPAEADVK 176
I E+ +HA +M TP E + K
Sbjct: 79 IAAEM-PQIHAF-TMKCLTPGEWEAK 102
>pdb|2KDN|A Chain A, Solution Structure Of Pfe0790c, A Putative Bola-Like
Protein From The Protozoan Parasite Plasmodium
Falciparum
Length = 108
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 101 MENKIKEHLNAESVTVKD-AYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTV 159
+E+K+ L + + D + G G ++++ FE + ++R R+V + EELQ+ +
Sbjct: 29 IEDKLSSALKPTFLELVDKSCGCGTSFDAVIVSNNFEDKKLLDRHRLVNTILKEELQN-I 87
Query: 160 HAVDSMTTKTPAEAD 174
HA SM TP E D
Sbjct: 88 HAF-SMKCHTPLEYD 101
>pdb|1V9J|A Chain A, Solution Structure Of A Bola-Like Protein From Mus
Musculus
Length = 113
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 101 MENKIKEHLNAESVTVKDAYGDGRHVS--IDVIASAFEGQSAVNRQRMVYKAIWEELQST 158
+ K+++ L AE V V+D + S + V+++ FEG+ + R R+V + + EEL
Sbjct: 35 LREKLRQDLEAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECLAEEL-PH 93
Query: 159 VHAVDSMTTKTP 170
+HA + T TP
Sbjct: 94 IHAFEQKTL-TP 104
>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
pdb|3RNY|B Chain B, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
Length = 346
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 84 ATHVNDAGSIDPSRMASMENKIKEHLNAESVTVKDAYGDGRHVSI 128
A V D DPS + + +H N +T+KD Y DG+HV +
Sbjct: 56 AVKVIDKSKRDPSEEIEILLRYGQHPNI--ITLKDVYDDGKHVYL 98
>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
pdb|2WNT|B Chain B, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
Length = 330
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 84 ATHVNDAGSIDPSRMASMENKIKEHLNAESVTVKDAYGDGRHVSI 128
A V D DPS + + +H N +T+KD Y DG+HV +
Sbjct: 56 AVKVIDKSKRDPSEEIEILLRYGQHPNI--ITLKDVYDDGKHVYL 98
>pdb|3DT6|A Chain A, Crystal Structure Of Bovin Brain Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3DT9|A Chain A, Crystal Structure Of Bovin Brain Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Soman
Length = 232
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 12/63 (19%)
Query: 111 AESVTVKDAYGDGRHVSID--VIASA--------FEGQSAVNRQRMVYKAIWEELQSTVH 160
++ V+D GDGR +S+ +A + F G S V Q M IW EL S +H
Sbjct: 9 SKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLV--QLMHQSEIWRELFSPLH 66
Query: 161 AVD 163
A++
Sbjct: 67 ALN 69
>pdb|1VPB|A Chain A, Crystal Structure Of A Putative Modulator Of Dna Gyrase
(Bt3649) From Bacteroides Thetaiotaomicron Vpi-5482 At
1.75 A Resolution
Length = 451
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 92 SIDPSRMASMENKIKEHLNAES---VTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVY 148
S++P M + E + ++V +YGDG + +I++ FEG++
Sbjct: 135 SLNPDDKIEMAKAVAEEALGKDERIISVGSSYGDGEDFAYRLISNGFEGET--------- 185
Query: 149 KAIWEELQSTV 159
K+ W L + +
Sbjct: 186 KSTWYSLSADI 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.124 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,028,424
Number of Sequences: 62578
Number of extensions: 136451
Number of successful extensions: 179
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 171
Number of HSP's gapped (non-prelim): 15
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)