BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030420
(177 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84W65|SUFE_ARATH SufE-like protein, chloroplastic OS=Arabidopsis thaliana GN=EMB1374
PE=1 SV=2
Length = 371
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 16/93 (17%)
Query: 96 SRMASMENKIKEHLNAESVTVKD--------------AYGDGR-HVSIDVIASAFEGQSA 140
SR + K+++ L+ + V+D A DG H ++ +++ AF+G+S
Sbjct: 280 SRGMRIREKLEKELDPVELEVEDVSYQHAGHAAVRGSAGDDGETHFNLRIVSDAFQGKSL 339
Query: 141 VNRQRMVYKAIWEELQSTVHAVDSMTTKTPAEA 173
V R R++Y + +EL+S +HA+ S+ KTPAE
Sbjct: 340 VKRHRLIYDLLQDELKSGLHAL-SIVAKTPAEV 371
>sp|Q9Y3E2|BOLA1_HUMAN BolA-like protein 1 OS=Homo sapiens GN=BOLA1 PE=1 SV=1
Length = 137
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 9/89 (10%)
Query: 91 GSIDPSRMASMENKIKEHLNAESVTVKD-------AYGDGRHVSIDVIASAFEGQSAVNR 143
G+I P A++ K++E L+ E + +++ G H + V++S FEG S + R
Sbjct: 27 GAIGPVE-AAIRTKLEEALSPEVLELRNESGGHAVPPGSETHFRVAVVSSRFEGLSPLQR 85
Query: 144 QRMVYKAIWEELQSTVHAVDSMTTKTPAE 172
R+V+ A+ EEL VHA+ ++ +TPA+
Sbjct: 86 HRLVHAALAEELGGPVHAL-AIQARTPAQ 113
>sp|Q3T138|BOLA1_BOVIN BolA-like protein 1 OS=Bos taurus GN=BOLA1 PE=2 SV=1
Length = 135
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 9/89 (10%)
Query: 91 GSIDPSRMASMENKIKEHLNAESVTVKD-------AYGDGRHVSIDVIASAFEGQSAVNR 143
G I P A++ K+++ LN E + +++ G H + V++S FEG S + R
Sbjct: 27 GVIGPVE-AAIRTKLEQALNPEVLELRNESGGHAVPPGSETHFRVAVVSSRFEGLSPLQR 85
Query: 144 QRMVYKAIWEELQSTVHAVDSMTTKTPAE 172
R+V+ A+ EEL VHA+ ++ +TPA+
Sbjct: 86 HRLVHAALSEELAGPVHAL-AIQARTPAQ 113
>sp|Q9D8S9|BOLA1_MOUSE BolA-like protein 1 OS=Mus musculus GN=Bola1 PE=1 SV=1
Length = 137
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 12/100 (12%)
Query: 80 FSTGATHVNDAGSIDPSRMASMENKIKEHLNAESVTVKD-------AYGDGRHVSIDVIA 132
S G+ AG ++ A++ K+++ L+ E + +++ G H + V++
Sbjct: 19 VSRGSAGSAAAGPVE----AAIRAKLEQALSPEVLELRNESGGHAVPAGSETHFRVAVVS 74
Query: 133 SAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAE 172
S FEG S + R R+V++A+ EEL VHA+ ++ KTPA+
Sbjct: 75 SRFEGMSPLQRHRLVHEALSEELAGPVHAL-AIQAKTPAQ 113
>sp|Q5RCE5|BOLA1_PONAB BolA-like protein 1 OS=Pongo abelii GN=BOLA1 PE=2 SV=1
Length = 137
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 51/89 (57%), Gaps = 9/89 (10%)
Query: 91 GSIDPSRMASMENKIKEHLNAESVTVKD-------AYGDGRHVSIDVIASAFEGQSAVNR 143
G++ P A++ K+++ L+ E + +++ G H + V++S FEG S + R
Sbjct: 27 GAVGPVE-AAIRTKLEQALSPEVLELRNESGGHAVPPGSETHFRVAVVSSRFEGLSPLQR 85
Query: 144 QRMVYKAIWEELQSTVHAVDSMTTKTPAE 172
R+++ A+ EEL VHA+ ++ +TPA+
Sbjct: 86 HRLIHAALAEELAGPVHAL-AIQARTPAQ 113
>sp|Q12238|UVI31_SCHPO UV-induced protein uvi31 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=uvi31 PE=2 SV=1
Length = 102
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 125 HVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAEA 173
H +++++ F G S V R R+VY + +E +HA+ ++KTP E
Sbjct: 53 HFRLEIVSPEFSGMSRVARHRLVYGLLKDEFDGGLHALQITSSKTPDEV 101
>sp|P73055|Y3122_SYNY3 Uncharacterized protein ssr3122 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=ssr3122 PE=3 SV=1
Length = 85
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 101 MENKIKEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQS-TV 159
++ +I+ L V V D G G H+ V++SAF GQS V + +MVY A+ + L S +
Sbjct: 7 VKQQIQAALPDAEVMVND-LGGGDHLEAVVVSSAFTGQSRVKQHQMVYGALKDALASEAI 65
Query: 160 HAVDSMTTKTP 170
HA+ ++ T TP
Sbjct: 66 HAL-ALKTFTP 75
>sp|P0ABE4|BOLA_SHIFL Protein BolA OS=Shigella flexneri GN=bolA PE=3 SV=1
Length = 105
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 121 GDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAV 162
G H + +++ F G+ +NR RM+Y + EEL +TVHA+
Sbjct: 34 GSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHAL 75
>sp|P0ABE2|BOLA_ECOLI Protein BolA OS=Escherichia coli (strain K12) GN=bolA PE=1 SV=1
Length = 105
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 121 GDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAV 162
G H + +++ F G+ +NR RM+Y + EEL +TVHA+
Sbjct: 34 GSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHAL 75
>sp|P0ABE3|BOLA_ECOL6 Protein BolA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928
/ UPEC) GN=bolA PE=3 SV=1
Length = 105
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 121 GDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAV 162
G H + +++ F G+ +NR RM+Y + EEL +TVHA+
Sbjct: 34 GSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHAL 75
>sp|P91375|YN1I_CAEEL Putative bolA-like protein K11H12.1 OS=Caenorhabditis elegans
GN=K11H12.1 PE=3 SV=1
Length = 108
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 121 GDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHA--VDSMTT 167
G +H + V++ FEG+ + R R+V + +EL +TVHA +D++ T
Sbjct: 40 GAEKHFRVQVVSDEFEGKRVIERHRLVNTCLAKELATTVHALRIDAIPT 88
>sp|Q9ZCE4|Y812_RICPR Uncharacterized protein RP812 OS=Rickettsia prowazekii (strain
Madrid E) GN=RP812 PE=4 SV=1
Length = 77
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 36/70 (51%)
Query: 101 MENKIKEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVH 160
+E +K+ + + + D GD H ++++ + F G S +N+ ++V A+ E L +H
Sbjct: 8 LEKILKKSFPSSVIKITDLVGDQDHYALEISDAQFNGLSLINQHKLVKNALSEILNKKLH 67
Query: 161 AVDSMTTKTP 170
++ T P
Sbjct: 68 SISIKTISIP 77
>sp|P0A9W8|YRBA_SHIFL Uncharacterized protein YrbA OS=Shigella flexneri GN=yrbA PE=3 SV=1
Length = 84
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 109 LNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEEL-QSTVHAVDSMTT 167
+NA S+ GDG H + + F+G S V +Q+ VY + E + + +HAV S+
Sbjct: 11 MNALSLQEVHVSGDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAV-SIKA 69
Query: 168 KTPAE 172
TPAE
Sbjct: 70 YTPAE 74
>sp|P0A9W6|YRBA_ECOLI Uncharacterized protein YrbA OS=Escherichia coli (strain K12)
GN=yrbA PE=1 SV=1
Length = 84
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 109 LNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEEL-QSTVHAVDSMTT 167
+NA S+ GDG H + + F+G S V +Q+ VY + E + + +HAV S+
Sbjct: 11 MNALSLQEVHVSGDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAV-SIKA 69
Query: 168 KTPAE 172
TPAE
Sbjct: 70 YTPAE 74
>sp|P0A9W7|YRBA_ECOL6 Uncharacterized protein YrbA OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=yrbA PE=3 SV=1
Length = 84
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 109 LNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEEL-QSTVHAVDSMTT 167
+NA S+ GDG H + + F+G S V +Q+ VY + E + + +HAV S+
Sbjct: 11 MNALSLQEVHVSGDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAV-SIKA 69
Query: 168 KTPAE 172
TPAE
Sbjct: 70 YTPAE 74
>sp|Q3E793|YA044_YEAST Uncharacterized bolA-like protein YAL044W-A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YAL044W-A
PE=1 SV=1
Length = 110
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 125 HVSIDVIASAFEGQSAVNRQRMVYKAIWEELQST--VHAVDSMTTKTPAEADVK 176
H I++++ FEG R RMVY + +E+ +HA+ ++ KTP E + K
Sbjct: 56 HFRIEMVSKKFEGLKLPQRHRMVYSLLQDEMAQANGIHAL-QLSLKTPQEYESK 108
>sp|Q89AF0|Y348_BUCBP Uncharacterized protein bbp_348 OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=bbp_348 PE=3 SV=1
Length = 79
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 100 SMENKIKEHLNAE-SVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEE-LQS 157
++ N IK L + +TV GD +H++I ++ F + + RQ+++YK + +
Sbjct: 2 TITNTIKSLLKKKIPLTVIHVTGDNKHINITAVSDIFNNINTLRRQQIIYKPLMPYIINK 61
Query: 158 TVHAV 162
T+HA+
Sbjct: 62 TLHAI 66
>sp|P53082|FRA2_YEAST Fe repressor of activation 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=FRA2 PE=1 SV=1
Length = 120
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 119 AYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHA 161
+YG G+ I V++ F+G+S + R R V KA+ EELQ +HA
Sbjct: 63 SYGCGQSFDIVVVSDFFQGKSKLMRSRAVNKAVKEELQE-IHA 104
>sp|Q8BGS2|BOLA2_MOUSE BolA-like protein 2 OS=Mus musculus GN=Bola2 PE=1 SV=1
Length = 86
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 101 MENKIKEHLNAESVTVKDAYGDGRHVS--IDVIASAFEGQSAVNRQRMVYKAIWEELQST 158
+ K+++ L AE V V+D + S + V+++ FEG+ + R R+V + + EEL
Sbjct: 8 LREKLRQDLEAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECLAEEL-PH 66
Query: 159 VHAVDSMTTKTPAE 172
+HA + T TP +
Sbjct: 67 IHAFEQKTL-TPEQ 79
>sp|Q8K9G5|Y372_BUCAP Uncharacterized protein BUsg_372 OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=BUsg_372 PE=3 SV=1
Length = 80
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 105 IKEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEEL-QSTVHAV 162
+KE LN + + V + D H I I + F+G + V RQ+ +Y + + + ++ +HA+
Sbjct: 10 LKEKLNLKDIYVTE---DNNHYEITAIGNVFKGLTQVKRQKKIYNPLIDLITENKIHAI 65
>sp|P57465|Y385_BUCAI Uncharacterized protein BU385 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=BU385 PE=3 SV=1
Length = 80
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 121 GDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQST-VHAVDSMTTKTPAEAD 174
GD H+ I I + F+ S V RQ+++Y + + ++ +HAV S+ + TP E +
Sbjct: 23 GDSNHIKIIAIGNIFKNVSQVKRQQIIYAPLIDMIKEKHIHAV-SIMSYTPEEWE 76
>sp|Q9H3K6|BOLA2_HUMAN BolA-like protein 2 OS=Homo sapiens GN=BOLA2 PE=1 SV=1
Length = 86
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 101 MENKIKEHLNAESVTVKDAYGDGRHVS--IDVIASAFEGQSAVNRQRMVYKAIWEELQST 158
+ K++ L AE V V+D + S + V+++ FEG+ + R R+V + EEL
Sbjct: 8 LREKLQRDLEAEHVEVEDTTLNRCSCSFRVLVVSAKFEGKPLLQRHRLVNACLAEEL-PH 66
Query: 159 VHAVDSMTTKTP 170
+HA + T TP
Sbjct: 67 IHAFEQKTL-TP 77
>sp|Q56585|BOLA_VIBAL Protein BolA homolog OS=Vibrio alginolyticus GN=bolA PE=3 SV=1
Length = 102
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 121 GDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAV 162
G H + V++ +F GQ + R R V++ + +EL + +HA+
Sbjct: 33 GSESHFKVIVVSDSFAGQRLIGRHRQVHQILADELDNHIHAL 74
>sp|B1MXB4|MUTS2_LEUCK MutS2 protein OS=Leuconostoc citreum (strain KM20) GN=mutS2 PE=3
SV=1
Length = 801
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 33 SQTRTFLNGSQAQTSSSLLSSCNSGNRTKLPIQSDGQSRFGRVGHRRFSTGATHVNDAGS 92
+Q + + G AQ S + + S +R LP++++ +S+FG V H + TG T
Sbjct: 172 NQMQAYTRGKTAQYLSDPIVTIRS-DRYVLPVKAEYRSQFGGVVHDQSQTGQTLY----- 225
Query: 93 IDPSRMASMENKIKE 107
++P + ++ NK+ E
Sbjct: 226 VEPQAVVTLNNKLSE 240
>sp|A6LS00|MUTS2_CLOB8 MutS2 protein OS=Clostridium beijerinckii (strain ATCC 51743 /
NCIMB 8052) GN=mutS2 PE=3 SV=1
Length = 786
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 57 GNRTKLPIQSDGQSRFGRVGHRRFSTGATHVNDAGSIDPSRMASMENKIKEHLNAESVTV 116
G+R LP++S+ +S+ + H + STGAT I+P + ++ N+I+E E +
Sbjct: 191 GDRYVLPVKSEYKSQVPGLVHDQSSTGATFF-----IEPMSLVNLNNEIRELFLKEKAEI 245
Query: 117 KDAYGD 122
+ D
Sbjct: 246 ERILSD 251
>sp|Q03VG8|MUTS2_LEUMM MutS2 protein OS=Leuconostoc mesenteroides subsp. mesenteroides
(strain ATCC 8293 / NCDO 523) GN=mutS2 PE=3 SV=1
Length = 800
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 33 SQTRTFLNGSQAQTSSSLLSSCNSGNRTKLPIQSDGQSRFGRVGHRRFSTGATHVNDAGS 92
++ + F G AQ S + + S +R LP++++ +S+FG V H + TG T
Sbjct: 172 NKMQEFTKGKTAQYLSDPIVTIRS-DRYVLPVKAEYRSQFGGVVHDQSQTGLTLY----- 225
Query: 93 IDPSRMASMENKIKEHLNAES 113
I+P + + NK+ E ES
Sbjct: 226 IEPQAVVELSNKLSELRVKES 246
>sp|Q9K8A0|MUTS2_BACHD MutS2 protein OS=Bacillus halodurans (strain ATCC BAA-125 / DSM
18197 / FERM 7344 / JCM 9153 / C-125) GN=mutS2 PE=3 SV=1
Length = 785
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 11 YIFSSSSRSLSCFFIHPKRSFVSQTRTFLNG-SQAQTSSSLLSSCN---SGNRTKLPIQS 66
++ S+S +L H RSF + R+ L G +++ ++ +LS +R +P++
Sbjct: 145 HVLDSASPTLRTLR-HQIRSFEANVRSKLEGITRSSNTAKMLSDAIVTIRNDRYVIPVKQ 203
Query: 67 DGQSRFGRVGHRRFSTGATHVNDAGSIDPSRMASMENKIKE 107
+ + FG + H + ++GAT ++P + + N+++E
Sbjct: 204 EYRGAFGGIVHDQSASGATLF-----VEPQAVVEINNQLRE 239
>sp|Q5WEK0|MUTS2_BACSK MutS2 protein OS=Bacillus clausii (strain KSM-K16) GN=mutS2 PE=3
SV=1
Length = 787
Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 11 YIFSSSSRSLSCFFIHPKRSFVSQTRTFLNG-SQAQTSSSLLSSCN---SGNRTKLPIQS 66
Y+ S+S SL H RS+ S ++ L+ +++ + +LS +R LP++
Sbjct: 145 YVLDSASTSLRTVR-HQIRSYESGIKSKLDQLTRSSNTRKMLSDAIVTIRSDRYVLPVKQ 203
Query: 67 DGQSRFGRVGHRRFSTGATHVNDAGSIDPSRMASMENKIKE 107
+ + FG + H + S+GAT I+P+ + ++ N++ E
Sbjct: 204 EYRGTFGGIVHDQSSSGATLF-----IEPAAIVTLNNQLTE 239
>sp|B1YJY5|MUTS2_EXIS2 MutS2 protein OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM
13490 / 255-15) GN=mutS2 PE=3 SV=1
Length = 788
Score = 31.2 bits (69), Expect = 3.8, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 29 RSFVSQTRTFLNGSQAQTSSSLLSSCNS--GNRTKLPIQSDGQSRFGRVGHRRFSTGATH 86
RS Q R+ ++G S L + + +R +P++ + + FG + H + ++GAT
Sbjct: 164 RSLEGQVRSKIDGVLRNKSKMLSDAIVTMRNDRYCVPVKQEYRQAFGGIVHDQSASGATL 223
Query: 87 VNDAGSIDPSRMASMENKIKEHLNAESVTVK-----DAYGDGRHVSIDVIA 132
+ ++ + E ++KE E + + + GD +++DV+A
Sbjct: 224 FIEPQAVVAANNEIQEARLKERAEIERILAQLSALVGSVGDSLRINVDVLA 274
>sp|Q8XJ80|MUTS2_CLOPE MutS2 protein OS=Clostridium perfringens (strain 13 / Type A)
GN=mutS2 PE=3 SV=1
Length = 786
Score = 31.2 bits (69), Expect = 3.9, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 57 GNRTKLPIQSDGQSRFGRVGHRRFSTGATHVNDAGSIDPSRMASMENKIKEHLNAESVTV 116
G+R +P++++ +S+ + H + STGAT I+P+ + ++ N+IKE + E +
Sbjct: 191 GDRYVIPVKAEYKSQVPGLVHDQSSTGATLF-----IEPTALVNLNNEIKELMLKERAEI 245
Query: 117 K 117
+
Sbjct: 246 E 246
>sp|Q0TP77|MUTS2_CLOP1 MutS2 protein OS=Clostridium perfringens (strain ATCC 13124 / NCTC
8237 / Type A) GN=mutS2 PE=3 SV=1
Length = 786
Score = 31.2 bits (69), Expect = 4.0, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 57 GNRTKLPIQSDGQSRFGRVGHRRFSTGATHVNDAGSIDPSRMASMENKIKEHLNAESVTV 116
G+R +P++++ +S+ + H + STGAT I+P+ + ++ N+IKE + E +
Sbjct: 191 GDRYVIPVKAEYKSQVPGLVHDQSSTGATLF-----IEPTALVNLNNEIKELMLKERAEI 245
Query: 117 K 117
+
Sbjct: 246 E 246
>sp|Q0SRU6|MUTS2_CLOPS MutS2 protein OS=Clostridium perfringens (strain SM101 / Type A)
GN=mutS2 PE=3 SV=1
Length = 786
Score = 31.2 bits (69), Expect = 4.1, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 57 GNRTKLPIQSDGQSRFGRVGHRRFSTGATHVNDAGSIDPSRMASMENKIKEHLNAESVTV 116
G+R +P++++ +S+ + H + STGAT I+P+ + ++ N+IKE + E +
Sbjct: 191 GDRYVIPVKAEYKSQVPGLVHDQSSTGATLF-----IEPTALVNLNNEIKELMLKERAEI 245
Query: 117 K 117
+
Sbjct: 246 E 246
>sp|P29943|YCB1_PSEDE Uncharacterized protein in cobS 5'region OS=Pseudomonas
denitrificans PE=3 SV=1
Length = 93
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 118 DAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAE 172
D G+ H+ + +++SAF G S V R R + + EL + +HA+ ++ P E
Sbjct: 37 DGTGES-HMRVRIVSSAFAGMSRVARHRAINDLLKPELDAGLHAL-AVEPAAPGE 89
>sp|P31329|PYR2_NOSS1 Phycobilisome 34.5 kDa linker polypeptide,
phycoerythrocyanin-associated, rod OS=Nostoc sp. (strain
PCC 7120 / UTEX 2576) GN=pecC PE=1 SV=3
Length = 278
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 121 GDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAV 162
GD R I+ IA AV R R VY +E L +T +
Sbjct: 224 GDNRMFVIEAIAGGLNTNVAVRRSRQVYTVSYERLSATYQEI 265
>sp|B9DPU2|MUTS2_STACT MutS2 protein OS=Staphylococcus carnosus (strain TM300) GN=mutS2
PE=3 SV=1
Length = 782
Score = 30.8 bits (68), Expect = 5.3, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 42 SQAQTSSSLLSSCNSGNRTKLPIQSDGQSRFGRVGHRRFSTGATHVNDAGSIDPSRMASM 101
+Q + S ++++ N +R +P++++ + F + H + S+G T I+PS + M
Sbjct: 182 NQKKLSDAIITVRN--DRHVIPVKAEYRQDFNGIVHDQSSSGQTLY-----IEPSAVVEM 234
Query: 102 ENKIKEHLNAESVTVK 117
NKI N E V V+
Sbjct: 235 NNKISRLRNDEKVEVE 250
>sp|Q1WT38|MUTS2_LACS1 MutS2 protein OS=Lactobacillus salivarius (strain UCC118) GN=mutS2
PE=3 SV=1
Length = 786
Score = 30.4 bits (67), Expect = 5.6, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 36 RTFLNGSQAQTSSSLLSSCN---SGNRTKLPIQSDGQSRFGRVGHRRFSTGATHVNDAGS 92
R LN T+S LS+ R LP++ + +S+FG + H + S+G T
Sbjct: 169 RERLNAYTRGTNSKYLSNAVVTIRNERYVLPVKQEYRSKFGGIVHDQSSSGQTLF----- 223
Query: 93 IDPSRMASMENKIKEHLNAE 112
++P+ + + N++++ AE
Sbjct: 224 VEPAVIVELNNRLRQQQVAE 243
>sp|Q88V16|MUTS2_LACPL MutS2 protein OS=Lactobacillus plantarum (strain ATCC BAA-793 /
NCIMB 8826 / WCFS1) GN=mutS2 PE=3 SV=1
Length = 787
Score = 30.0 bits (66), Expect = 7.4, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Query: 58 NRTKLPIQSDGQSRFGRVGHRRFSTGATHVNDAGSIDPSRMASMENKIKEHLNAE 112
+R +P++++ +SRFG + H + ++G T I+P + +M ++++++ AE
Sbjct: 196 DRYVIPVKAENRSRFGGIVHDQSASGQTLF-----IEPQAVMAMNDRLRQNQVAE 245
>sp|Q9KPS0|BOLA_VIBCH Protein BolA OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El
Tor Inaba N16961) GN=bolA PE=3 SV=1
Length = 106
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 121 GDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKT 169
G H + V++ F G V R R+V + + +EL + +HA+ T T
Sbjct: 33 GSESHFKVTVVSERFAGLRPVARHRLVNQTLADELANHIHALAIHTYTT 81
>sp|Q03AZ5|MUTS2_LACC3 MutS2 protein OS=Lactobacillus casei (strain ATCC 334) GN=mutS2
PE=3 SV=1
Length = 786
Score = 29.6 bits (65), Expect = 9.4, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 38 FLNGSQAQTSSSLLSSCNSGNRTKLPIQSDGQSRFGRVGHRRFSTGATHVNDAGSIDPSR 97
+ G+Q++ S + + +R +P++++ +++FG V H + +TG T I+P
Sbjct: 174 YTRGAQSKYLSDPIVTIRD-DRYVIPVKAEYRAKFGGVVHDQSATGQTLF-----IEPQA 227
Query: 98 MASMENKIKEHLNAE 112
+ ++ N+++E AE
Sbjct: 228 IVALNNRLREAQLAE 242
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.124 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,192,654
Number of Sequences: 539616
Number of extensions: 2023900
Number of successful extensions: 5825
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 5792
Number of HSP's gapped (non-prelim): 80
length of query: 177
length of database: 191,569,459
effective HSP length: 110
effective length of query: 67
effective length of database: 132,211,699
effective search space: 8858183833
effective search space used: 8858183833
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)