Query 030420
Match_columns 177
No_of_seqs 130 out of 1133
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 21:53:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030420.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030420hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dhm_A Protein BOLA; stationar 100.0 4.4E-32 1.5E-36 206.7 8.6 85 91-176 4-95 (107)
2 1v60_A BOLA1, riken cDNA 18100 100.0 8.8E-32 3E-36 209.6 10.4 99 70-177 7-113 (123)
3 3o2e_A BOLA-like protein; ssgc 100.0 4.7E-32 1.6E-36 206.4 6.7 86 90-177 17-103 (105)
4 2kdn_A Putative uncharacterize 100.0 7.3E-31 2.5E-35 200.8 9.9 80 95-176 23-103 (108)
5 1v9j_A BOLA-like protein riken 100.0 9.5E-31 3.3E-35 201.4 5.6 80 96-177 30-111 (113)
6 3tr3_A BOLA; cellular processe 100.0 1.7E-29 5.7E-34 184.4 6.6 78 95-175 4-81 (82)
7 1ny8_A Protein YRBA; structure 99.9 9.8E-29 3.3E-33 185.6 6.0 76 97-176 7-83 (97)
8 1xs3_A Hypothetical protein XC 99.9 1.3E-28 4.4E-33 178.8 5.8 74 96-173 6-80 (80)
9 2kz0_A BOLA family protein; BO 99.9 1.1E-28 3.7E-33 177.9 5.4 70 97-170 7-76 (76)
10 1ylq_A Putative nucleotidyltra 77.9 14 0.00047 25.7 7.9 72 97-174 3-80 (96)
11 2rff_A Putative nucleotidyltra 29.0 1.6E+02 0.0053 21.0 6.2 68 100-175 21-94 (111)
12 1ghh_A DINI, DNA-damage-induci 26.1 1.6E+02 0.0054 20.8 5.6 52 96-157 20-73 (81)
No 1
>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural GEN NPPSFA; NMR {Escherichia coli str}
Probab=99.97 E-value=4.4e-32 Score=206.68 Aligned_cols=85 Identities=29% Similarity=0.435 Sum_probs=80.2
Q ss_pred CCCCchHHHHHHHHHHhhCCCCeEEEEecC-------CCCceEEEEEEcCccCCCCHHHHHHHHHHHHHHHHcCcccccc
Q 030420 91 GSIDPSRMASMENKIKEHLNAESVTVKDAY-------GDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVD 163 (177)
Q Consensus 91 ~~~~~p~~~~I~~kL~~~L~~~~leV~D~S-------G~GsHF~I~VVS~~F~GmS~V~RHR~Vy~~Lkdei~~~IHAL~ 163 (177)
++..|+++++|+++|+++|+|.+|+|+|+| |||+||+|+|||+.|+||++|+|||+||++|+|+|+++||||
T Consensus 4 ~~~~m~~~~~I~~~L~~~l~p~~l~V~d~S~~H~~~~G~gsHf~v~IVS~~F~G~s~v~RHrlVy~~L~~ei~~~IHAL- 82 (107)
T 2dhm_A 4 GSSGMMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHAL- 82 (107)
T ss_dssp SSCCCCHHHHHHHHHHHHTCCSCCEEEECCCCCSSCCCSCCCEEEEEECGGGSSCCSSHHHHHHHHHTHHHHHTTCCCC-
T ss_pred CcCCCCHHHHHHHHHHhcCCCcEEEEEECcccccCCCCCCceEEEEEEchhhCCCCHHHHHHHHHHHHHHHHcCCcceE-
Confidence 345578999999999999999999999998 799999999999999999999999999999999999889999
Q ss_pred cccccChhhhhhc
Q 030420 164 SMTTKTPAEADVK 176 (177)
Q Consensus 164 sIkT~TP~Ew~kk 176 (177)
+|+|+||+||+++
T Consensus 83 si~t~TP~Ew~~~ 95 (107)
T 2dhm_A 83 ALHTYTIKEWEGL 95 (107)
T ss_dssp EEEEECHHHHHTS
T ss_pred EEEecCHHHHHhc
Confidence 7999999999874
No 2
>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=99.97 E-value=8.8e-32 Score=209.62 Aligned_cols=99 Identities=28% Similarity=0.417 Sum_probs=86.4
Q ss_pred ceeeccee-ceeeccccccCCCCCCCchHHHHHHHHHHhhCCCCeEEEEecC-------CCCceEEEEEEcCccCCCCHH
Q 030420 70 SRFGRVGH-RRFSTGATHVNDAGSIDPSRMASMENKIKEHLNAESVTVKDAY-------GDGRHVSIDVIASAFEGQSAV 141 (177)
Q Consensus 70 ~r~~~~~~-R~~S~~~~~~~~~~~~~~p~~~~I~~kL~~~L~~~~leV~D~S-------G~GsHF~I~VVS~~F~GmS~V 141 (177)
+..+..|. |.+++. ...++++++|+++|+++|+|.+|+|+|+| |||+||+|+|||+.|+||++|
T Consensus 7 ~~~~~~~~~~~~~~~--------~~~~~~~~~I~~~L~~~l~p~~l~V~DeS~~H~~~~G~gsHf~v~IVS~~F~Gks~v 78 (123)
T 1v60_A 7 GMATRSCVSRGSAGS--------AAAGPVEAAIRAKLEQALSPEVLELRNESGGHAVPAGSETHFRVAVVSSRFEGMSPL 78 (123)
T ss_dssp CCCCCCCCCCSCCCC--------SSSCHHHHHHHHHHHHHTCCSEEEEEECCCSSSCCTTCCSEEEEEEECGGGTTCCHH
T ss_pred hhhhhhhhhhhccCC--------CCCCcHHHHHHHHHHhhCCCeEEEEEECcccccCCCCCCCeEEEEEEehhhCCCCHH
Confidence 34455554 554442 33478999999999999999999999998 789999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCcccccccccccChhhhhhcC
Q 030420 142 NRQRMVYKAIWEELQSTVHAVDSMTTKTPAEADVKK 177 (177)
Q Consensus 142 ~RHR~Vy~~Lkdei~~~IHAL~sIkT~TP~Ew~kkk 177 (177)
+|||+||++|+|+|+++|||| +|+|+||+||++++
T Consensus 79 ~RHRlVy~aL~~ei~~~IHAL-si~t~TP~Ew~~~~ 113 (123)
T 1v60_A 79 QRHRLVHEALSEELAGPVHAL-AIQAKTPAQWRENP 113 (123)
T ss_dssp HHHHHHHHHTHHHHTTTCSEE-EEEEECTTTTTTCC
T ss_pred HHHHHHHHHHHHHHcCCccee-EeEecCHHHHHhcc
Confidence 999999999999999889999 79999999999753
No 3
>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis}
Probab=99.97 E-value=4.7e-32 Score=206.41 Aligned_cols=86 Identities=28% Similarity=0.450 Sum_probs=79.7
Q ss_pred CCCCCchHHHHHHHHHHhhCCCCeEEEEecC-CCCceEEEEEEcCccCCCCHHHHHHHHHHHHHHHHcCccccccccccc
Q 030420 90 AGSIDPSRMASMENKIKEHLNAESVTVKDAY-GDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTK 168 (177)
Q Consensus 90 ~~~~~~p~~~~I~~kL~~~L~~~~leV~D~S-G~GsHF~I~VVS~~F~GmS~V~RHR~Vy~~Lkdei~~~IHAL~sIkT~ 168 (177)
.|...|+++++|+++|+++|+|.+|+|+|+| |||+||+|+|||+.|+||++|+|||+||++|+|+|+ +|||| +|+|+
T Consensus 17 ~g~~~M~~~~~I~~kL~~~l~p~~l~V~D~S~g~gsHf~v~IVS~~F~Gks~v~RHRlVy~aL~~ei~-~IHAL-si~t~ 94 (105)
T 3o2e_A 17 QGPGSMVSKSIVEERLRSMLSPQFLKVTDNSGGCGAAFNAYIVSQQFEGKGLLDRQRLVNSAIAAEMP-QIHAF-TMKCL 94 (105)
T ss_dssp --CCCCCCHHHHHHHHHHHHCCSEEEEEECCBTTBEEEEEEEECGGGTTCCHHHHHHHHHHHTTTTGG-GEEEE-EEEEE
T ss_pred CCCCcCcHHHHHHHHHHhhCCCCEEEEEECCCCCCcEEEEEEEchHhCCCCHHHHHHHHHHHHHHHHh-cCcee-EEEeC
Confidence 3455578999999999999999999999999 799999999999999999999999999999999999 69999 79999
Q ss_pred ChhhhhhcC
Q 030420 169 TPAEADVKK 177 (177)
Q Consensus 169 TP~Ew~kkk 177 (177)
||+||+++|
T Consensus 95 TP~Ew~~~~ 103 (105)
T 3o2e_A 95 TPGEWEAKN 103 (105)
T ss_dssp CHHHHHHTT
T ss_pred CHHHHHHhh
Confidence 999999765
No 4
>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum}
Probab=99.97 E-value=7.3e-31 Score=200.76 Aligned_cols=80 Identities=29% Similarity=0.422 Sum_probs=76.6
Q ss_pred chHHHHHHHHHHhhCCCCeEEEEecC-CCCceEEEEEEcCccCCCCHHHHHHHHHHHHHHHHcCcccccccccccChhhh
Q 030420 95 PSRMASMENKIKEHLNAESVTVKDAY-GDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAEA 173 (177)
Q Consensus 95 ~p~~~~I~~kL~~~L~~~~leV~D~S-G~GsHF~I~VVS~~F~GmS~V~RHR~Vy~~Lkdei~~~IHAL~sIkT~TP~Ew 173 (177)
|...++|+++|+++|+|.+|+|+|+| |||+||+|+|||+.|+||++|+|||+||++|+|+|+. |||| +|+|+||+||
T Consensus 23 Mm~~~~I~~~L~~~l~p~~l~V~DeS~G~gsHF~v~IVS~~F~Gks~v~RHRlVy~aL~~e~~~-IHAL-si~t~TP~Ew 100 (108)
T 2kdn_A 23 MCIQKVIEDKLSSALKPTFLELVDKSCGCGTSFDAVIVSNNFEDKKLLDRHRLVNTILKEELQN-IHAF-SMKCHTPLEY 100 (108)
T ss_dssp CSHHHHHHHHHHHHHCCSEEEEEECCCSSSCCEEEEEECGGGTTCCHHHHHHHHHHHHHHHGGG-CSCE-EEEEECHHHH
T ss_pred CCcHHHHHHHHHhhCCCcEEEEEeCCCCCCceEEEEEEehhhCCCCHHHHHHHHHHHHHHHHhc-CceE-EEEecChHHH
Confidence 46889999999999999999999999 7999999999999999999999999999999999997 9999 7999999999
Q ss_pred hhc
Q 030420 174 DVK 176 (177)
Q Consensus 174 ~kk 176 (177)
+++
T Consensus 101 ~~~ 103 (108)
T 2kdn_A 101 DKL 103 (108)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
No 5
>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1
Probab=99.96 E-value=9.5e-31 Score=201.40 Aligned_cols=80 Identities=28% Similarity=0.435 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEecC--CCCceEEEEEEcCccCCCCHHHHHHHHHHHHHHHHcCcccccccccccChhhh
Q 030420 96 SRMASMENKIKEHLNAESVTVKDAY--GDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAEA 173 (177)
Q Consensus 96 p~~~~I~~kL~~~L~~~~leV~D~S--G~GsHF~I~VVS~~F~GmS~V~RHR~Vy~~Lkdei~~~IHAL~sIkT~TP~Ew 173 (177)
...++|+++|+++|+|.+|+|+|+| |||+||+|+|||+.|+||++|+|||+||++|+|+|+. |||| +|+|+||+||
T Consensus 30 m~~~~I~~~L~~~l~p~~l~V~DeS~~G~gsHF~v~IVS~~F~Gks~V~RHRlVy~aL~eei~~-IHAL-si~t~TP~Ew 107 (113)
T 1v9j_A 30 LSADYLREKLRQDLEAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECLAEELPH-IHAF-EQKTLTPEQW 107 (113)
T ss_dssp SCHHHHHHHHHHHHTCSEEEEEECCSSSSCCCEEEEEECSHHHHSCHHHHHHHHHHHTTTTGGG-CSSE-EEEEECHHHH
T ss_pred CcHHHHHHHHHhhCCCcEEEEEeccCCCCCceEEEEEEchhhCCCCHHHHHHHHHHHHHHHHhc-CceE-EEEecChHHH
Confidence 4779999999999999999999999 8999999999999999999999999999999999997 9999 7999999999
Q ss_pred hhcC
Q 030420 174 DVKK 177 (177)
Q Consensus 174 ~kkk 177 (177)
++++
T Consensus 108 ~~~~ 111 (113)
T 1v9j_A 108 TRQR 111 (113)
T ss_dssp HHSC
T ss_pred HHhh
Confidence 9754
No 6
>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii}
Probab=99.96 E-value=1.7e-29 Score=184.45 Aligned_cols=78 Identities=35% Similarity=0.555 Sum_probs=73.3
Q ss_pred chHHHHHHHHHHhhCCCCeEEEEecCCCCceEEEEEEcCccCCCCHHHHHHHHHHHHHHHHcCcccccccccccChhhhh
Q 030420 95 PSRMASMENKIKEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAEAD 174 (177)
Q Consensus 95 ~p~~~~I~~kL~~~L~~~~leV~D~SG~GsHF~I~VVS~~F~GmS~V~RHR~Vy~~Lkdei~~~IHAL~sIkT~TP~Ew~ 174 (177)
|...++|+++|+++|+|.+|+|.+ |||+||+|+|||+.|+||++|+|||+||++|+++|+++|||| +|+|+||+||+
T Consensus 4 Mm~~~~I~~~L~~~l~~~~l~V~~--g~gshf~v~IVS~~F~G~~~v~Rhr~V~~~L~~~~~~~iHAL-~i~t~Tp~Ew~ 80 (82)
T 3tr3_A 4 MVTTHDIKQWIETGLSESRVISAE--GDGHHFEAVVLCPTFEGQTALTRHRLVYNALGSHMQSDIHAL-SLKTYTPDEYE 80 (82)
T ss_dssp CCCHHHHHHHHHHHSTTCEEEEEE--ECSSEEEEEEECGGGTTCCHHHHHHHHHHHTGGGGTTTCSEE-EEEEECHHHHH
T ss_pred cchHHHHHHHHHhhCCCcEEEEEc--CCCCeEEEEEEchhhCCCCHHHHHHHHHHHHHHHHcCCcceE-EEEeCCHHHHh
Confidence 356789999999999999999984 699999999999999999999999999999999998789999 79999999997
Q ss_pred h
Q 030420 175 V 175 (177)
Q Consensus 175 k 175 (177)
+
T Consensus 81 ~ 81 (82)
T 3tr3_A 81 R 81 (82)
T ss_dssp C
T ss_pred c
Confidence 5
No 7
>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1
Probab=99.95 E-value=9.8e-29 Score=185.59 Aligned_cols=76 Identities=30% Similarity=0.500 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhhCCCCeEEEEecCCCCceEEEEEEcCccCCCCHHHHHHHHHHHHHHHHc-CcccccccccccChhhhhh
Q 030420 97 RMASMENKIKEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQ-STVHAVDSMTTKTPAEADV 175 (177)
Q Consensus 97 ~~~~I~~kL~~~L~~~~leV~D~SG~GsHF~I~VVS~~F~GmS~V~RHR~Vy~~Lkdei~-~~IHAL~sIkT~TP~Ew~k 175 (177)
..++|+++|+++|+|.+|+|. |||+||+|+|||+.|+||++|+|||+||++|+|+|+ ++|||| +|+|+||+||++
T Consensus 7 ~~~~I~~~L~~~l~p~~l~V~---G~gsHf~v~IVS~~F~Gks~v~RHRlVy~aL~~e~~~~~IHAL-si~t~TP~Ew~~ 82 (97)
T 1ny8_A 7 ENNEIQSVLMNALSLQEVHVS---GDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAV-SIKAYTPAEWAR 82 (97)
T ss_dssp CCHHHHHHHHHHHCCSEEEEE---ESSSEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHHHTTSEE-EEEECCHHHHHH
T ss_pred CHHHHHHHHHhhCCCcEEEEE---cCCceEEEEEEChhhCCCCHHHHHHHHHHHHHHHHccCCcceE-EeEecChHHHHh
Confidence 347999999999999999998 999999999999999999999999999999999999 479999 799999999986
Q ss_pred c
Q 030420 176 K 176 (177)
Q Consensus 176 k 176 (177)
+
T Consensus 83 ~ 83 (97)
T 1ny8_A 83 D 83 (97)
T ss_dssp H
T ss_pred h
Confidence 4
No 8
>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic}
Probab=99.95 E-value=1.3e-28 Score=178.78 Aligned_cols=74 Identities=34% Similarity=0.561 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEecCC-CCceEEEEEEcCccCCCCHHHHHHHHHHHHHHHHcCcccccccccccChhhh
Q 030420 96 SRMASMENKIKEHLNAESVTVKDAYG-DGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAEA 173 (177)
Q Consensus 96 p~~~~I~~kL~~~L~~~~leV~D~SG-~GsHF~I~VVS~~F~GmS~V~RHR~Vy~~Lkdei~~~IHAL~sIkT~TP~Ew 173 (177)
...++|+++|+++|+|.+|+|+ | ||+||+|+|||+.|+||++|+|||+||++|+|+|+++|||| +|+|+||+||
T Consensus 6 m~~~~I~~~L~~~l~~~~l~V~---G~~gsHf~v~IVS~~F~G~~~v~RHrlVy~~L~~e~~~~iHAL-si~t~Tp~E~ 80 (80)
T 1xs3_A 6 LDAETIRKLIESGLPEARVDVQ---GEDGVHFEATVVSPAFVGKAPLARHRMVYATLGELMGGAIHAL-QLKTLTPDEA 80 (80)
T ss_dssp CHHHHHHHHHHHHSSSCEEEEE---SCTTSCCEEEEECGGGCSSCCHHHHHHHHHHTTSTTTTCCSCC-EEEEECGGGC
T ss_pred CCHHHHHHHHHhhCCCcEEEEE---cCCCCEEEEEEEchhhCCCcHHHHHHHHHHHHHHHHcCCcceE-EEEecCCCCC
Confidence 4679999999999999999998 6 99999999999999999999999999999999999889999 7999999998
No 9
>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis}
Probab=99.95 E-value=1.1e-28 Score=177.93 Aligned_cols=70 Identities=31% Similarity=0.526 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhhCCCCeEEEEecCCCCceEEEEEEcCccCCCCHHHHHHHHHHHHHHHHcCcccccccccccCh
Q 030420 97 RMASMENKIKEHLNAESVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTP 170 (177)
Q Consensus 97 ~~~~I~~kL~~~L~~~~leV~D~SG~GsHF~I~VVS~~F~GmS~V~RHR~Vy~~Lkdei~~~IHAL~sIkT~TP 170 (177)
..++|+++|+++|+|.+|+|+|+||||+||+|+|||+.|+||++|+|||+||++|+|+ +|||| +|+|+||
T Consensus 7 ~~~~I~~~L~~~l~~~~l~V~d~SG~g~Hf~v~IVS~~F~G~s~v~rHr~Vy~~L~~e---~iHAL-si~t~tp 76 (76)
T 2kz0_A 7 TQSQLELLIRNAFPEAEITVTSLVGDNNHYSIKVISSQFQGKSKLEQHRMIYKVLDGL---NIHAI-QIQTGCK 76 (76)
T ss_dssp TTHHHHHHHHHHCTTEEEEEECCSSTTSCCEEEEEEGGGTTCCHHHHHHHHHHHTTTS---CCCSS-SEEECCC
T ss_pred cHHHHHHHHHhhCCCcEEEEEECCCCccEEEEEEEchHhCCCCHHHHHHHHHHHhccC---CceEE-EEEEeCC
Confidence 5689999999999999999999999999999999999999999999999999999999 59999 7999997
No 10
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=77.91 E-value=14 Score=25.73 Aligned_cols=72 Identities=10% Similarity=0.152 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhhCCCCeEEEEecC--C---CC-ceEEEEEEcCccCCCCHHHHHHHHHHHHHHHHcCcccccccccccCh
Q 030420 97 RMASMENKIKEHLNAESVTVKDAY--G---DG-RHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTP 170 (177)
Q Consensus 97 ~~~~I~~kL~~~L~~~~leV~D~S--G---~G-sHF~I~VVS~~F~GmS~V~RHR~Vy~~Lkdei~~~IHAL~sIkT~TP 170 (177)
..++|++.+++.+++..+.+.=-. | .+ |-+.|.|+.+. +.+..++.++.. .|.+.+. -+-+ .+..+++
T Consensus 3 ~l~~i~~~l~~~~~~~~v~LFGS~ArG~~~~~~SDiDllV~~~~--~~~~~~~~~l~~-~l~~~~~--~~~v-d~~v~~~ 76 (96)
T 1ylq_A 3 HMKEIKEITKKDVQDAEIYLYGSVVEGDYSIGLSDIDVAIVSDV--FEDRNRKLEFFG-KITKKFF--DSPF-EFHILTK 76 (96)
T ss_dssp HHHHHHHHHHHHCTTCEEEEESHHHHCCSSSCCCSEEEEEECGG--GGSHHHHHHHHH-HHHHHTT--TCSE-EEEEECH
T ss_pred HHHHHHHHHHHHcCCcEEEEEEEEEeCCCCCCCCceEEEEEeCC--CCCHHHHHHHHH-HHHHhhc--CCCe-EEEEECH
Confidence 567899999999998778776110 2 36 89999999886 456555655443 4444421 2456 3678899
Q ss_pred hhhh
Q 030420 171 AEAD 174 (177)
Q Consensus 171 ~Ew~ 174 (177)
+||+
T Consensus 77 ~~~~ 80 (96)
T 1ylq_A 77 KEWK 80 (96)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 9975
No 11
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=28.98 E-value=1.6e+02 Score=21.00 Aligned_cols=68 Identities=15% Similarity=0.210 Sum_probs=38.3
Q ss_pred HHHHHHHhhC-CCCeEEEEecC--C---CCceEEEEEEcCccCCCCHHHHHHHHHHHHHHHHcCcccccccccccChhhh
Q 030420 100 SMENKIKEHL-NAESVTVKDAY--G---DGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQSTVHAVDSMTTKTPAEA 173 (177)
Q Consensus 100 ~I~~kL~~~L-~~~~leV~D~S--G---~GsHF~I~VVS~~F~GmS~V~RHR~Vy~~Lkdei~~~IHAL~sIkT~TP~Ew 173 (177)
++.+.|.+.+ +...+-+.--- | .+|-+.|.|+.+...+.....+- ..|.+.+.. -+ .+-+++|++|
T Consensus 21 ~~~~~l~~~~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~~~~~~~~~~~----~~l~~~l~~---~V-Dlv~~~~~~~ 92 (111)
T 2rff_A 21 EIVEEVASSFPNLEEVYIFGSRARGDYLDTSDIDILFVFKGIKEMNVFDRM----YMVSRFIRG---NV-DYIVLDEGEK 92 (111)
T ss_dssp HHHHHHHHHCTTEEEEEEESHHHHSCCCTTCCEEEEEEESSCTTCCHHHHH----HHHGGGCCS---SE-EEEEEEGGGG
T ss_pred HHHHHHHHHcCCccEEEEEeeeecCCCCCCCCEEEEEEecCCCChhHHHHH----HHHHHHhCC---CE-EEEECCHHHH
Confidence 3344444567 34456665100 2 36899999998876665544432 234333332 35 2557789998
Q ss_pred hh
Q 030420 174 DV 175 (177)
Q Consensus 174 ~k 175 (177)
++
T Consensus 93 ~~ 94 (111)
T 2rff_A 93 DR 94 (111)
T ss_dssp GG
T ss_pred HH
Confidence 75
No 12
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=26.13 E-value=1.6e+02 Score=20.76 Aligned_cols=52 Identities=13% Similarity=0.288 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHhhCCCC--eEEEEecCCCCceEEEEEEcCccCCCCHHHHHHHHHHHHHHHHcC
Q 030420 96 SRMASMENKIKEHLNAE--SVTVKDAYGDGRHVSIDVIASAFEGQSAVNRQRMVYKAIWEELQS 157 (177)
Q Consensus 96 p~~~~I~~kL~~~L~~~--~leV~D~SG~GsHF~I~VVS~~F~GmS~V~RHR~Vy~~Lkdei~~ 157 (177)
-+.++|.++|...||+. .|.|.- |...+..| + |-+. .-+..|..+|.+-+.+
T Consensus 20 aL~~EL~kRl~~~fpd~~~~V~Vr~--~s~n~lsV------~-g~~k-~dKe~i~eiLqE~we~ 73 (81)
T 1ghh_A 20 ALAGELSRRIQYAFPDNEGHVSVRY--AAANNLSV------I-GATK-EDKQRISEILQETWES 73 (81)
T ss_dssp HHHHHHHHHHHHHCSSSCCEEEEEE--ESSCEEEE------E-SCCH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhCCCCCceEEEee--cCCCceee------c-CCCh-hHHHHHHHHHHHHHhC
Confidence 47789999999999997 899963 23344444 2 3333 3588899999887764
Done!