BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030421
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3U0K|A Chain A, Crystal Structure Of The Genetically Encoded Calcium
Indicator Rcamp
Length = 440
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 85/148 (57%)
Query: 24 PSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTD 83
P+ + + + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D
Sbjct: 291 PTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAD 350
Query: 84 KDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSL 143
DG IDF EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK +
Sbjct: 351 GDGTIDFPEFLIMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTD 410
Query: 144 DSCRKMIRGVDADGDGLIDMDEFMTMMT 171
+ +MIR D DGDG ++ +EF+ MMT
Sbjct: 411 EEVDEMIREADIDGDGQVNYEEFVQMMT 438
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADGDG ID EF+ MM R
Sbjct: 307 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLIMMAR 366
Query: 173 NVK 175
+K
Sbjct: 367 KMK 369
>pdb|3SG7|A Chain A, Crystal Structure Of Gcamp3-Kf(Linker 1)
Length = 448
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 82/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D DG ID
Sbjct: 305 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTID 364
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 365 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 424
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ MMT
Sbjct: 425 IREADIDGDGQVNYEEFVQMMT 446
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADGDG ID EF+TMM R
Sbjct: 315 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMAR 374
Query: 173 NVK 175
+K
Sbjct: 375 KMK 377
>pdb|2BBM|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex
By Multidimensional Nmr
pdb|2BBN|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex
By Multidimensional Nmr
pdb|1MXE|A Chain A, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|1MXE|B Chain B, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|4CLN|A Chain A, Structure Of A Recombinant Calmodulin From Drosophila
Melanogaster Refined At 2.2-Angstroms Resolution
Length = 148
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 83/142 (58%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 5 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 64
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 65 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEM 124
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+TMMT
Sbjct: 125 IREADIDGDGQVNYEEFVTMMT 146
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 15 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 74
Query: 173 NVK 175
+K
Sbjct: 75 KMK 77
>pdb|2LV6|A Chain A, The Complex Between Ca-calmodulin And Skeletal Muscle
Myosin Light Chain Kinase From Combination Of Nmr And
Aqueous And Contrast-matched Saxs Data
Length = 148
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 83/142 (58%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 5 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 64
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 65 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEM 124
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+TMMT
Sbjct: 125 IREADIDGDGQVNYEEFVTMMT 146
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 15 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 74
Query: 173 NVK 175
+K
Sbjct: 75 KMK 77
>pdb|1Y0V|H Chain H, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|I Chain I, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|J Chain J, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|K Chain K, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|L Chain L, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|M Chain M, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
Length = 146
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 83/143 (58%)
Query: 29 ASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYI 88
A+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G I
Sbjct: 2 ATEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 61
Query: 89 DFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRK 148
DF EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK + + +
Sbjct: 62 DFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDE 121
Query: 149 MIRGVDADGDGLIDMDEFMTMMT 171
MIR D DGDG ++ +EF+ MMT
Sbjct: 122 MIREADIDGDGQVNYEEFVQMMT 144
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 13 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 72
Query: 173 NVK 175
+K
Sbjct: 73 KMK 75
>pdb|2BKH|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
pdb|2VAS|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|3GN4|B Chain B, Myosin Lever Arm
pdb|3GN4|D Chain D, Myosin Lever Arm
pdb|3GN4|F Chain F, Myosin Lever Arm
pdb|3GN4|H Chain H, Myosin Lever Arm
pdb|3L9I|C Chain C, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
pdb|2X51|B Chain B, M6 Delta Insert1
pdb|4ANJ|B Chain B, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
pdb|4DBP|C Chain C, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
pdb|4DBQ|B Chain B, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 149
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 83/142 (58%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 65
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 66 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEM 125
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+TMMT
Sbjct: 126 IREADIDGDGQVNYEEFVTMMT 147
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 16 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 75
Query: 173 NVK 175
+K
Sbjct: 76 KMK 78
>pdb|2K0J|A Chain A, Solution Structure Of Cam Complexed To Drp1p
pdb|2K61|A Chain A, Solution Structure Of Cam Complexed To Dapk Peptide
Length = 148
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 82/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D DG ID
Sbjct: 5 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTID 64
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 65 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 124
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ MMT
Sbjct: 125 IREADIDGDGQVNYEEFVQMMT 146
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADGDG ID EF+TMM R
Sbjct: 15 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMAR 74
Query: 173 NVK 175
+K
Sbjct: 75 KMK 77
>pdb|1OOJ|A Chain A, Structural Genomics Of Caenorhabditis Elegans : Calmodulin
Length = 149
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 83/142 (58%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 65
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 66 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEM 125
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+TMMT
Sbjct: 126 IREADIDGDGQVNYEEFVTMMT 147
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 16 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 75
Query: 173 NVK 175
+K
Sbjct: 76 KMK 78
>pdb|3SG5|A Chain A, Crystal Structure Of Dimeric Gcamp3-D380y, Qp(Linker 1),
Lp(Linker 2)
Length = 448
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 81/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D DG ID
Sbjct: 305 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTID 364
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 365 FPEFLTMMARKMKYTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 424
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ MMT
Sbjct: 425 IREADIDGDGQVNYEEFVQMMT 446
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADGDG ID EF+TMM R
Sbjct: 315 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMAR 374
Query: 173 NVK 175
+K
Sbjct: 375 KMK 377
>pdb|4DJC|A Chain A, 1.35 A Crystal Structure Of The Nav1.5 Diii-Iv-CaCAM
COMPLEX
Length = 152
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 84/149 (56%)
Query: 23 NPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDT 82
N + + + E ++ F FD + DG I+ E + + LG+ ++AE+ +D
Sbjct: 2 NAMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDA 61
Query: 83 DKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYS 142
D +G IDF EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK +
Sbjct: 62 DGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLT 121
Query: 143 LDSCRKMIRGVDADGDGLIDMDEFMTMMT 171
+ +MIR D DGDG ++ +EF+ MMT
Sbjct: 122 DEEVDEMIREADIDGDGQVNYEEFVQMMT 150
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 19 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 78
Query: 173 NVK 175
+K
Sbjct: 79 KMK 81
>pdb|3EKH|A Chain A, Calcium-Saturated Gcamp2 T116vK378W MUTANT MONOMER
Length = 449
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 82/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 306 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 365
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 366 FPEFLTMMARWMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 425
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ MMT
Sbjct: 426 IREADIDGDGQVNYEEFVQMMT 447
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 316 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 375
Query: 173 NVK 175
+K
Sbjct: 376 WMK 378
>pdb|3SG4|A Chain A, Crystal Structure Of Gcamp3-D380y, Lp(Linker 2)
Length = 448
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 81/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D DG ID
Sbjct: 305 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTID 364
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 365 FPEFLTMMARKMKYTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 424
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ MMT
Sbjct: 425 IREADIDGDGQVNYEEFVQMMT 446
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADGDG ID EF+TMM R
Sbjct: 315 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMAR 374
Query: 173 NVK 175
+K
Sbjct: 375 KMK 377
>pdb|3SG3|A Chain A, Crystal Structure Of Gcamp3-D380y
Length = 449
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 81/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D DG ID
Sbjct: 306 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTID 365
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 366 FPEFLTMMARKMKYTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 425
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ MMT
Sbjct: 426 IREADIDGDGQVNYEEFVQMMT 447
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADGDG ID EF+TMM R
Sbjct: 316 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMAR 375
Query: 173 NVK 175
+K
Sbjct: 376 KMK 378
>pdb|2VB6|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 149
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 83/142 (58%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 65
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 66 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEM 125
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+TMMT
Sbjct: 126 IRESDIDGDGQVNYEEFVTMMT 147
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 16 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 75
Query: 173 NVK 175
+K
Sbjct: 76 KMK 78
>pdb|3O77|A Chain A, The Structure Of Ca2+ Sensor (Case-16)
Length = 415
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 82/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 272 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 331
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 332 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 391
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ MMT
Sbjct: 392 IREADIDGDGQVNYEEFVQMMT 413
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 282 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 341
Query: 173 NVK 175
+K
Sbjct: 342 KMK 344
>pdb|3O78|A Chain A, The Structure Of Ca2+ Sensor (Case-12)
pdb|3O78|B Chain B, The Structure Of Ca2+ Sensor (Case-12)
Length = 415
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 82/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 272 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 331
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 332 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 391
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ MMT
Sbjct: 392 IREADIDGDGQVNYEEFVQMMT 413
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 282 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 341
Query: 173 NVK 175
+K
Sbjct: 342 KMK 344
>pdb|3EVR|A Chain A, Crystal Structure Of Calcium Bound Monomeric Gcamp2
Length = 411
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 82/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 269 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 328
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 329 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 388
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ MMT
Sbjct: 389 IREADIDGDGQVNYEEFVQMMT 410
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 279 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 338
Query: 173 NVK 175
+K
Sbjct: 339 KMK 341
>pdb|1AHR|A Chain A, Calmodulin Mutant With A Two Residue Deletion In The
Central Helix
Length = 146
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 85/143 (59%), Gaps = 4/143 (2%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 5 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 64
Query: 90 FKEFIEMM-HDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRK 148
F EF+ MM M D+ + +I+ AF++FD +G+ ISA EL V+ +GEK + + +
Sbjct: 65 FPEFLTMMARKMKDS---EEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDE 121
Query: 149 MIRGVDADGDGLIDMDEFMTMMT 171
MIR D DGDG ++ +EF+TMMT
Sbjct: 122 MIREADIDGDGQVNYEEFVTMMT 144
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 15 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 74
Query: 173 NVK 175
+K
Sbjct: 75 KMK 77
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 26 VPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKD 85
+ R + + +E+R+ F FD + +G IS E ++ LG+ ++ E+ + R D D D
Sbjct: 72 MARKMKDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGD 131
Query: 86 GYIDFKEFIEMM 97
G ++++EF+ MM
Sbjct: 132 GQVNYEEFVTMM 143
>pdb|3EVU|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2, (#1)
pdb|3EVV|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2 (#2)
pdb|3EK4|A Chain A, Calcium-Saturated Gcamp2 Monomer
pdb|3EK7|A Chain A, Calcium-Saturated Gcamp2 Dimer
Length = 449
Score = 93.2 bits (230), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 82/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 306 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 365
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 366 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 425
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ MMT
Sbjct: 426 IREADIDGDGQVNYEEFVQMMT 447
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 316 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 375
Query: 173 NVK 175
+K
Sbjct: 376 KMK 378
>pdb|3SG6|A Chain A, Crystal Structure Of Dimeric Gcamp2-Lia(Linker 1)
Length = 450
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 82/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 307 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 366
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 367 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 426
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ MMT
Sbjct: 427 IREADIDGDGQVNYEEFVQMMT 448
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 317 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 376
Query: 173 NVK 175
+K
Sbjct: 377 KMK 379
>pdb|3EK8|A Chain A, Calcium-Saturated Gcamp2 T116vG87R MUTANT MONOMER
Length = 449
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 82/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 306 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 365
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 366 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 425
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ MMT
Sbjct: 426 IREADIDGDGQVNYEEFVQMMT 447
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 316 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 375
Query: 173 NVK 175
+K
Sbjct: 376 KMK 378
>pdb|1XFU|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|P Chain P, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|R Chain R, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|S Chain S, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|T Chain T, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFV|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFW|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFY|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFZ|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|P Chain P, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|R Chain R, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|S Chain S, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|T Chain T, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
Length = 149
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 82/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 65
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 66 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDQM 125
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ MMT
Sbjct: 126 IREADIDGDGQVNYEEFVQMMT 147
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 16 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 75
Query: 173 NVK 175
+K
Sbjct: 76 KMK 78
>pdb|3EWT|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
pdb|3EWV|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
Length = 154
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 82/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 11 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 70
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 71 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 130
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ MMT
Sbjct: 131 IREADIDGDGQVNYEEFVQMMT 152
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 21 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 80
Query: 173 NVK 175
+K
Sbjct: 81 KMK 83
>pdb|2WEL|D Chain D, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 150
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 82/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 7 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 66
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 67 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 126
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ MMT
Sbjct: 127 IREADIDGDGQVNYEEFVQMMT 148
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 17 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 76
Query: 173 NVK 175
+K
Sbjct: 77 KMK 79
>pdb|2VAY|A Chain A, Calmodulin Complexed With Cav1.1 Iq Peptide
pdb|2LGF|A Chain A, Solution Structure Of Ca2+CALMODULIN COMPLEXED WITH A
PEPTIDE Representing The Calmodulin-Binding Domain Of
L-Selectin
Length = 146
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 82/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 3 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 62
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 63 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 122
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ MMT
Sbjct: 123 IREADIDGDGQVNYEEFVQMMT 144
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 13 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 72
Query: 173 NVK 175
+K
Sbjct: 73 KMK 75
>pdb|1CM1|A Chain A, Motions Of Calmodulin-Single-Conformer Refinement
pdb|1CM4|A Chain A, Motions Of Calmodulin-four-conformer Refinement
pdb|1CKK|A Chain A, CalmodulinRAT CA2+CALMODULIN DEPENDENT PROTEIN KINASE
Fragment
pdb|1CFF|A Chain A, Nmr Solution Structure Of A Complex Of Calmodulin With A
Binding Peptide Of The Ca2+-Pump
pdb|1QIV|A Chain A, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd), 1:2
Complex
pdb|1QIW|A Chain A, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd)
pdb|1QIW|B Chain B, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd)
pdb|1G4Y|R Chain R, 1.60 A Crystal Structure Of The Gating Domain From Small
Conductance Potassium Channel Complexed With
Calcium-Calmodulin
pdb|1K90|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1IWQ|A Chain A, Crystal Structure Of Marcks Calmodulin Binding Domain
Peptide Complexed With Ca2+CALMODULIN
pdb|1NWD|A Chain A, Solution Structure Of Ca2+CALMODULIN BOUND TO THE C-
Terminal Domain Of Petunia Glutamate Decarboxylase
pdb|1L7Z|A Chain A, Crystal Structure Of Ca2+/calmodulin Complexed With
Myristoylated Cap-23/nap-22 Peptide
pdb|1S26|D Chain D, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|E Chain E, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|F Chain F, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1SK6|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1QX5|D Chain D, Crystal Structure Of Apocalmodulin
pdb|1QX5|I Chain I, Crystal Structure Of Apocalmodulin
pdb|1QX5|B Chain B, Crystal Structure Of Apocalmodulin
pdb|1QX5|J Chain J, Crystal Structure Of Apocalmodulin
pdb|1QX5|K Chain K, Crystal Structure Of Apocalmodulin
pdb|1QX5|T Chain T, Crystal Structure Of Apocalmodulin
pdb|1QX5|R Chain R, Crystal Structure Of Apocalmodulin
pdb|1QX5|Y Chain Y, Crystal Structure Of Apocalmodulin
pdb|1XA5|A Chain A, Structure Of Calmodulin In Complex With Kar-2, A Bis-Indol
Alkaloid
pdb|1SY9|A Chain A, Structure Of Calmodulin Complexed With A Fragment Of The
Olfactory Cng Channel
pdb|2F3Y|A Chain A, CalmodulinIQ DOMAIN COMPLEX
pdb|2F3Z|A Chain A, CalmodulinIQ-Aa Domain Complex
pdb|1X02|A Chain A, Solution Structure Of Stereo Array Isotope Labeled (Sail)
Calmodulin
pdb|2DFS|B Chain B, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|C Chain C, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|D Chain D, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|E Chain E, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|F Chain F, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|G Chain G, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|N Chain N, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|O Chain O, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|P Chain P, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|Q Chain Q, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|R Chain R, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|S Chain S, 3-D Structure Of Myosin-V Inhibited State
pdb|1YR5|A Chain A, 1.7-A Structure Of Calmodulin Bound To A Peptide From Dap
Kinase
pdb|2FOT|A Chain A, Crystal Structure Of The Complex Between Calmodulin And
Alphaii-Spectrin
pdb|2BCX|A Chain A, Crystal Structure Of Calmodulin In Complex With A
Ryanodine Receptor Peptide
pdb|1A29|A Chain A, Calmodulin Complexed With Trifluoperazine (1:2 Complex)
pdb|1CFC|A Chain A, Calcium-Free Calmodulin
pdb|1CFD|A Chain A, Calcium-Free Calmodulin
pdb|1CLL|A Chain A, Calmodulin Structure Refined At 1.7 Angstroms Resolution
pdb|1CTR|A Chain A, Drug Binding By Calmodulin: Crystal Structure Of A
Calmodulin-Trifluoperazine Complex
pdb|1LIN|A Chain A, Calmodulin Complexed With Trifluoperazine (1:4 Complex)
pdb|1MUX|A Chain A, Solution Nmr Structure Of CalmodulinW-7 Complex: The Basis
Of Diversity In Molecular Recognition, 30 Structures
pdb|2HQW|A Chain A, Crystal Structure Of Ca2+CALMODULIN BOUND TO NMDA RECEPTOR
NR1C1 Peptide
pdb|2O5G|A Chain A, Calmodulin-Smooth Muscle Light Chain Kinase Peptide
Complex
pdb|2O60|A Chain A, Calmodulin Bound To Peptide From Neuronal Nitric Oxide
Synthase
pdb|3BXK|A Chain A, Crystal Structure Of The PQ-Type Calcium Channel (Cav2.1)
Iq Domain And Ca2+calmodulin Complex
pdb|3BXK|C Chain C, Crystal Structure Of The PQ-Type Calcium Channel (Cav2.1)
Iq Domain And Ca2+calmodulin Complex
pdb|3BXL|A Chain A, Crystal Structure Of The R-Type Calcium Channel (Cav2.3)
Iq Domain And Ca2+calmodulin Complex
pdb|2K0E|A Chain A, A Coupled Equilibrium Shift Mechanism In Calmodulin-
Mediated Signal Transduction
pdb|2K0F|A Chain A, Calmodulin Complexed With Calmodulin-Binding Peptide From
Smooth Muscle Myosin Light Chain Kinase
pdb|3DVE|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.2 Iq Domain Complex
pdb|3DVJ|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.2 Iq Domain (Without
Cloning Artifact, Hm To Tv) Complex
pdb|3DVK|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.3 Iq Domain Complex
pdb|3DVM|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.1 Iq Domain Complex
pdb|2JZI|A Chain A, Structure Of Calmodulin Complexed With The Calmodulin
Binding Domain Of Calcineurin
pdb|3BYA|A Chain A, Structure Of A Calmodulin Complex
pdb|3G43|A Chain A, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|B Chain B, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|C Chain C, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|D Chain D, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|2KNE|A Chain A, Calmodulin Wraps Around Its Binding Domain In The Plasma
Membrane Ca2+ Pump Anchored By A Novel 18-1 Motif
pdb|2KDU|A Chain A, Structural Basis Of The Munc13-1CA2+-Calmodulin
Interaction: A Novel 1-26 Calmodulin Binding Motif With
A Bipartite Binding Mode
pdb|2X0G|B Chain B, X-ray Structure Of A Dap-kinase Calmodulin Complex
pdb|3GOF|A Chain A, Calmodulin Bound To Peptide From Macrophage Nitric Oxide
Synthase
pdb|3GOF|B Chain B, Calmodulin Bound To Peptide From Macrophage Nitric Oxide
Synthase
pdb|3IF7|A Chain A, Structure Of Calmodulin Complexed With Its First
Endogenous Inhibitor, Sphingosylphosphorylcholine
pdb|2L53|A Chain A, Solution Nmr Structure Of Apo-Calmodulin In Complex With
The Iq Motif Of Human Cardiac Sodium Channel Nav1.5
pdb|2L7L|A Chain A, Solution Structure Of Ca2+CALMODULIN COMPLEXED WITH A
PEPTIDE Representing The Calmodulin-Binding Domain Of
Calmodulin Kinase I
pdb|2LL6|A Chain A, Solution Nmr Structure Of Cam Bound To Inos Cam Binding
Domain Peptide
pdb|2LL7|A Chain A, Solution Nmr Structure Of Cam Bound To The Enos Cam
Binding Domain Peptide
pdb|4EHQ|A Chain A, Crystal Structure Of Calmodulin Binding Domain Of Orai1 In
Complex With Ca2+CALMODULIN DISPLAYS A UNIQUE BINDING
MODE
Length = 148
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 82/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 5 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 64
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 65 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 124
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ MMT
Sbjct: 125 IREADIDGDGQVNYEEFVQMMT 146
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 15 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 74
Query: 173 NVK 175
+K
Sbjct: 75 KMK 77
>pdb|2YGG|B Chain B, Complex Of Cambr And Cam
Length = 150
Score = 93.2 bits (230), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 82/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 65
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 66 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 125
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ MMT
Sbjct: 126 IREADIDGDGQVNYEEFVQMMT 147
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 16 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 75
Query: 173 NVK 175
+K
Sbjct: 76 KMK 78
>pdb|1CDL|A Chain A, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|B Chain B, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|C Chain C, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|D Chain D, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1PK0|D Chain D, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|E Chain E, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|F Chain F, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|3GP2|A Chain A, Calmodulin Bound To Peptide From Calmodulin Kinase Ii
(Camkii)
Length = 147
Score = 92.8 bits (229), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 82/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 5 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 64
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 65 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 124
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ MMT
Sbjct: 125 IREADIDGDGQVNYEEFVQMMT 146
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 15 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 74
Query: 173 NVK 175
+K
Sbjct: 75 KMK 77
>pdb|1K93|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
Length = 144
Score = 92.8 bits (229), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 82/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 1 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 60
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 61 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 120
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ MMT
Sbjct: 121 IREADIDGDGQVNYEEFVQMMT 142
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 11 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 70
Query: 173 NVK 175
+K
Sbjct: 71 KMK 73
>pdb|2BE6|A Chain A, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|2BE6|B Chain B, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|2BE6|C Chain C, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|1ZUZ|A Chain A, Calmodulin In Complex With A Mutant Peptide From Human
Drp-1 Kinase
Length = 150
Score = 92.8 bits (229), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 82/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 65
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 66 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 125
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ MMT
Sbjct: 126 IREADIDGDGQVNYEEFVQMMT 147
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 16 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 75
Query: 173 NVK 175
+K
Sbjct: 76 KMK 78
>pdb|1CDM|A Chain A, Modulation Of Calmodulin Plasticity In Molecular
Recognition On The Basis Of X-Ray Structures
Length = 144
Score = 92.8 bits (229), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 82/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 2 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 61
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 62 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 121
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ MMT
Sbjct: 122 IREADIDGDGQVNYEEFVQMMT 143
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 12 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 71
Query: 173 NVK 175
+K
Sbjct: 72 KMK 74
>pdb|2F2O|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2O|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2P|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2P|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
Length = 179
Score = 92.8 bits (229), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 82/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 65
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 66 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 125
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ MMT
Sbjct: 126 IREADIDGDGQVNYEEFVQMMT 147
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 16 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 75
Query: 173 NVK 175
+K
Sbjct: 76 KMK 78
>pdb|1IQ5|A Chain A, CalmodulinNEMATODE CA2+CALMODULIN DEPENDENT KINASE KINASE
Fragment
pdb|1LVC|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|2BKI|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
pdb|2BKI|D Chain D, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
pdb|1WRZ|A Chain A, Calmodulin Complexed With A Peptide From A Human
Death-Associated Protein Kinase
pdb|2V01|A Chain A, Recombinant Vertebrate Calmodulin Complexed With Pb
pdb|2V02|A Chain A, Recombinant Vertebrate Calmodulin Complexed With Ba
pdb|2R28|A Chain A, The Complex Structure Of Calmodulin Bound To A Calcineurin
Peptide
pdb|2R28|B Chain B, The Complex Structure Of Calmodulin Bound To A Calcineurin
Peptide
pdb|2W73|A Chain A, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|B Chain B, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|E Chain E, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|F Chain F, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|3HR4|B Chain B, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|D Chain D, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|F Chain F, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|H Chain H, Human Inos Reductase And Calmodulin Complex
pdb|3OXQ|A Chain A, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|B Chain B, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|C Chain C, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|D Chain D, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|2Y4V|A Chain A, Crystal Structure Of Human Calmodulin In Complex With A
Dap Kinase-1 Mutant (W305y) Peptide
pdb|3SJQ|A Chain A, Crystal Structure Of A Small Conductance Potassium Channel
Splice Variant Complexed With Calcium-Calmodulin
pdb|3SJQ|B Chain B, Crystal Structure Of A Small Conductance Potassium Channel
Splice Variant Complexed With Calcium-Calmodulin
pdb|4DCK|B Chain B, Crystal Structure Of The C-Terminus Of Voltage-Gated
Sodium Channel In Complex With Fgf13 And Cam
pdb|3SUI|A Chain A, Crystal Structure Of Ca2+-Calmodulin In Complex With A
Trpv1 C- Terminal Peptide
pdb|4G27|R Chain R, Calcium-Calmodulin Complexed With The Calmodulin Binding
Domain From A Small Conductance Potassium Channel Splice
Variant And Phenylurea
pdb|4G28|R Chain R, Calcium-Calmodulin Complexed With The Calmodulin Binding
Domain From A Small Conductance Potassium Channel Splice
Variant And Ebio-1
Length = 149
Score = 92.8 bits (229), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 82/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 65
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 66 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 125
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ MMT
Sbjct: 126 IREADIDGDGQVNYEEFVQMMT 147
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 16 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 75
Query: 173 NVK 175
+K
Sbjct: 76 KMK 78
>pdb|4GOW|D Chain D, Crystal Structure Of Ca2+CAM:KV7.4 (KCNQ4) B HELIX COMPLEX
Length = 144
Score = 92.8 bits (229), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 82/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 3 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 62
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 63 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 122
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ MMT
Sbjct: 123 IREADIDGDGQVNYEEFVQMMT 144
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 13 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 72
Query: 173 NVK 175
+K
Sbjct: 73 KMK 75
>pdb|2IX7|A Chain A, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
pdb|2IX7|B Chain B, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
Length = 145
Score = 92.8 bits (229), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 82/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 4 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 63
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 64 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 123
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ MMT
Sbjct: 124 IREADIDGDGQVNYEEFVQMMT 145
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 14 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 73
Query: 173 NVK 175
+K
Sbjct: 74 KMK 76
>pdb|3SG2|A Chain A, Crystal Structure Of Gcamp2-T116v,D381y
Length = 449
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 81/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 306 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 365
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 366 FPEFLTMMARKMKYTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 425
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ MMT
Sbjct: 426 IREADIDGDGQVNYEEFVQMMT 447
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 316 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 375
Query: 173 NVK 175
+K
Sbjct: 376 KMK 378
>pdb|1DMO|A Chain A, Calmodulin, Nmr, 30 Structures
pdb|3CLN|A Chain A, Structure Of Calmodulin Refined At 2.2 Angstroms
Resolution
Length = 148
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 82/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 5 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 64
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GEK + + +M
Sbjct: 65 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 124
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR + DGDG ++ +EF+ MMT
Sbjct: 125 IREANIDGDGQVNYEEFVQMMT 146
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 15 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 74
Query: 173 NVK 175
+K
Sbjct: 75 KMK 77
>pdb|1PRW|A Chain A, Crystal Structure Of Bovine Brain Ca++ Calmodulin In A
Compact Form
Length = 149
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 81/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 65
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GE + + +M
Sbjct: 66 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEXLTDEEVDEM 125
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ MMT
Sbjct: 126 IREADIDGDGQVNYEEFVQMMT 147
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 16 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 75
Query: 173 NVK 175
+K
Sbjct: 76 KMK 78
>pdb|1UP5|A Chain A, Chicken Calmodulin
pdb|1UP5|B Chain B, Chicken Calmodulin
Length = 148
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 81/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 5 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 64
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ ISA EL V+ +GE + + +M
Sbjct: 65 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEXLTDEEVDEM 124
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ MMT
Sbjct: 125 IREADIDGDGQVNYEEFVQMMT 146
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 15 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 74
Query: 173 NVK 175
+K
Sbjct: 75 KMK 77
>pdb|1CLM|A Chain A, Structure Of Paramecium Tetraurelia Calmodulin At 1.8
Angstroms Resolution
Length = 148
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 80/142 (56%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 5 TEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 64
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ +M + + ++ AF++FD +G+ ISA EL V+ +GEK + D +M
Sbjct: 65 FPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEM 124
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG I+ +EF+ MM
Sbjct: 125 IREADIDGDGHINYEEFVRMMV 146
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+++M R
Sbjct: 15 AFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMAR 74
Query: 173 NVK 175
+K
Sbjct: 75 KMK 77
>pdb|1EXR|A Chain A, The 1.0 Angstrom Crystal Structure Of Ca+2 Bound
Calmodulin
pdb|1N0Y|A Chain A, Crystal Structure Of Pb-Bound Calmodulin
pdb|1N0Y|B Chain B, Crystal Structure Of Pb-Bound Calmodulin
pdb|1OSA|A Chain A, Crystal Structure Of Recombinant Paramecium Tetraurelia
Calmodulin At 1.68 Angstroms Resolution
Length = 148
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 80/142 (56%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 5 TEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 64
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ +M + + ++ AF++FD +G+ ISA EL V+ +GEK + D +M
Sbjct: 65 FPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEM 124
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG I+ +EF+ MM
Sbjct: 125 IREADIDGDGHINYEEFVRMMV 146
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+++M R
Sbjct: 15 AFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMAR 74
Query: 173 NVK 175
+K
Sbjct: 75 KMK 77
>pdb|1DEG|A Chain A, The Linker Of Des-Glu84 Calmodulin Is Bent As Seen In The
Crystal Structure
Length = 142
Score = 89.4 bits (220), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 83/145 (57%), Gaps = 7/145 (4%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 1 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 60
Query: 90 FKEFIEMMHDMGDNRVKKND---IQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSC 146
F EF+ MM ++K D I+ AF++FD +G+ ISA EL V+ +GEK + +
Sbjct: 61 FPEFLTMMA----RKMKDTDSEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEV 116
Query: 147 RKMIRGVDADGDGLIDMDEFMTMMT 171
+MIR + DGDG ++ +EF+ MMT
Sbjct: 117 DEMIREANIDGDGQVNYEEFVQMMT 141
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 11 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 70
Query: 173 NVK 175
+K
Sbjct: 71 KMK 73
>pdb|1GGZ|A Chain A, Crystal Structure Of The Calmodulin-Like Protein (Hclp)
From Human Epithelial Cells
Length = 148
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 82/142 (57%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ V E ++ F FD + DG I+ E + + LG+ ++AE+ ID D +G +D
Sbjct: 5 TEEQVTEFKEAFSLFDKDGDGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRDGNGTVD 64
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ MM + + +I+ AF++FD +G+ +SA EL V+ ++GEK S + +M
Sbjct: 65 FPEFLGMMARKMKDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDEEVDEM 124
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ ++
Sbjct: 125 IRAADTDGDGQVNYEEFVRVLV 146
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ EL V+R +G+ + R M+ +D DG+G +D EF+ MM R
Sbjct: 15 AFSLFDKDGDGCITTRELGTVMRSLGQNPTEAELRDMMSEIDRDGNGTVDFPEFLGMMAR 74
Query: 173 NVK 175
+K
Sbjct: 75 KMK 77
>pdb|1QS7|A Chain A, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
pdb|1QS7|C Chain C, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 145
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 80/137 (58%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
+ E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G IDF EF
Sbjct: 6 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 65
Query: 94 IEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGV 153
+ +M + + +++ AF++FD +G+ ISA EL V+ +GEK + + +MIR
Sbjct: 66 LNLMARKMKDTDSEEELKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 125
Query: 154 DADGDGLIDMDEFMTMM 170
D DGDG ++ +EF+ +M
Sbjct: 126 DVDGDGQVNYEEFVQVM 142
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+ +M R
Sbjct: 12 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAR 71
Query: 173 NVK 175
+K
Sbjct: 72 KMK 74
>pdb|1QTX|A Chain A, The 1.65 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 80/137 (58%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
+ E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G IDF EF
Sbjct: 9 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 68
Query: 94 IEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGV 153
+ +M + + +++ AF++FD +G+ ISA EL V+ +GEK + + +MIR
Sbjct: 69 LNLMARKMKDTDSEEELKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 128
Query: 154 DADGDGLIDMDEFMTMM 170
D DGDG ++ +EF+ +M
Sbjct: 129 DVDGDGQVNYEEFVQVM 145
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+ +M R
Sbjct: 15 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAR 74
Query: 173 NVK 175
+K
Sbjct: 75 KMK 77
>pdb|1VRK|A Chain A, The 1.9 Angstrom Structure Of E84k-Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 79/137 (57%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
+ E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G IDF EF
Sbjct: 9 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 68
Query: 94 IEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGV 153
+ +M + + ++ AF++FD +G+ ISA EL V+ +GEK + + +MIR
Sbjct: 69 LNLMARKMKDTDSEEKLKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 128
Query: 154 DADGDGLIDMDEFMTMM 170
D DGDG ++ +EF+ +M
Sbjct: 129 DVDGDGQVNYEEFVQVM 145
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+ +M R
Sbjct: 15 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAR 74
Query: 173 NVK 175
+K
Sbjct: 75 KMK 77
>pdb|1RFJ|A Chain A, Crystal Structure Of Potato Calmodulin Pcm6
Length = 149
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 80/141 (56%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 6 TEDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 65
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ +M + + +++ AF++FD + + ISA EL V+ +GEK + + +M
Sbjct: 66 FPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEM 125
Query: 150 IRGVDADGDGLIDMDEFMTMM 170
IR D DGDG I+ DEF+ +M
Sbjct: 126 IREADVDGDGQINYDEFVKVM 146
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+ +M R
Sbjct: 16 AFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAR 75
Query: 173 NVK 175
+K
Sbjct: 76 KMK 78
>pdb|4AQR|A Chain A, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
pdb|4AQR|B Chain B, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
Length = 149
Score = 82.8 bits (203), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 79/137 (57%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
+ E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G IDF EF
Sbjct: 10 ISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 69
Query: 94 IEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGV 153
+ +M + + +++ AF++FD + + ISA EL V+ +GEK + + +MIR
Sbjct: 70 LNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 129
Query: 154 DADGDGLIDMDEFMTMM 170
D DGDG I+ +EF+ +M
Sbjct: 130 DVDGDGQINYEEFVKVM 146
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+ +M R
Sbjct: 16 AFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAR 75
Query: 173 NVK 175
+K
Sbjct: 76 KMK 78
>pdb|3KF9|A Chain A, Crystal Structure Of The SdcenSKMLCK COMPLEX
pdb|3KF9|C Chain C, Crystal Structure Of The SdcenSKMLCK COMPLEX
Length = 149
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 77/139 (55%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
QE+R+ FD FDT+ G I E A+ LG K E+ K ID D G IDF+EF+
Sbjct: 8 QEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMIADIDKDGSGTIDFEEFL 67
Query: 95 EMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVD 154
+MM R + +I AF+LFD + KIS + L V +++GE + + ++MI D
Sbjct: 68 QMMTAKMGERDSREEIMKAFRLFDDDETGKISFKNLKRVAKELGENMTDEELQEMIDEAD 127
Query: 155 ADGDGLIDMDEFMTMMTRN 173
DGDG ++ +EF +M +
Sbjct: 128 RDGDGEVNEEEFFRIMKKT 146
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%)
Query: 106 KKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDE 165
+K +I+ AF LFD +G I A+EL +R +G + + +KMI +D DG G ID +E
Sbjct: 6 QKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMIADIDKDGSGTIDFEE 65
Query: 166 FMTMMT 171
F+ MMT
Sbjct: 66 FLQMMT 71
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 22 QNPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFID 81
Q + R + +E+ + F FD ++ GKIS LG+ ++ E+ + D
Sbjct: 68 QMMTAKMGERDSREEIMKAFRLFDDDETGKISFKNLKRVAKELGENMTDEELQEMIDEAD 127
Query: 82 TDKDGYIDFKEFIEMM 97
D DG ++ +EF +M
Sbjct: 128 RDGDGEVNEEEFFRIM 143
>pdb|2LAN|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 N-Domain With Rdc
pdb|2LAP|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 C-Domain With Rdc
Length = 167
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 87/148 (58%), Gaps = 13/148 (8%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
++E+R+ F +FD +KDG I+ + + + +G ++ E+ + + I+ + G++DF +F
Sbjct: 24 IEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDF 83
Query: 94 IEMM--------HDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRK-MGEKYSLD 144
+E+M DM + +++ AF+ FD NGD +IS EL E +RK +G +
Sbjct: 84 VELMGPKLLAETADM----IGVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHR 139
Query: 145 SCRKMIRGVDADGDGLIDMDEFMTMMTR 172
++IR VD +GDG +D +EF+ MM+R
Sbjct: 140 DIEEIIRDVDLNGDGRVDFEEFVRMMSR 167
>pdb|1A2X|A Chain A, Complex Of Troponin C With A 47 Residue (1-47) Fragment Of
Troponin I
Length = 159
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 78/158 (49%), Gaps = 13/158 (8%)
Query: 21 RQNPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFI 80
+Q + S + E + FD FD + G IS E + + +LG+ +K E+ +
Sbjct: 3 QQAEARSYLSEEMIAEFKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEEV 62
Query: 81 DTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQG--------AFQLFDLNGDKKISAEELME 132
D D G IDF+EF+ MM R K D +G F++FD N D I AEEL E
Sbjct: 63 DEDGSGTIDFEEFLVMMV-----RQMKEDAKGKSEEELAECFRIFDRNADGYIDAEELAE 117
Query: 133 VLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
+ R GE + + +++ D + DG ID DEF+ MM
Sbjct: 118 IFRASGEHVTDEEIESLMKDGDKNNDGRIDFDEFLKMM 155
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 109 DIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMT 168
+ + AF +FD +G IS +EL V+R +G+ + + +I VD DG G ID +EF+
Sbjct: 18 EFKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLV 77
Query: 169 MMTRNVK 175
MM R +K
Sbjct: 78 MMVRQMK 84
>pdb|3OX5|A Chain A, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|B Chain B, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|C Chain C, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|D Chain D, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|E Chain E, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|F Chain F, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
Length = 153
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 87/148 (58%), Gaps = 13/148 (8%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
++E+R+ F +FD +KDG I+ + + + +G ++ E+ + + I+ + G++DF +F
Sbjct: 10 IEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDF 69
Query: 94 IEMM--------HDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRK-MGEKYSLD 144
+E+M DM + +++ AF+ FD NGD +IS EL E +RK +G +
Sbjct: 70 VELMGPKLLAETADM----IGVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHR 125
Query: 145 SCRKMIRGVDADGDGLIDMDEFMTMMTR 172
++IR VD +GDG +D +EF+ MM+R
Sbjct: 126 DIEEIIRDVDLNGDGRVDFEEFVRMMSR 153
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 29 ASRSNVQEMRQVFDKFDTNKDGKISQDEYNSAL-SVLGKGISKAEMAKSFRFIDTDKDGY 87
A V+E+R F +FDTN DG+IS E A+ +LG + ++ + R +D + DG
Sbjct: 82 ADMIGVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGR 141
Query: 88 IDFKEFIEMM 97
+DF+EF+ MM
Sbjct: 142 VDFEEFVRMM 151
>pdb|5TNC|A Chain A, Refined Crystal Structure Of Troponin C From Turkey
Skeletal Muscle At 2.0 Angstroms Resolution
Length = 162
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 82/154 (53%), Gaps = 3/154 (1%)
Query: 20 ERQNPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRF 79
++Q + S + E + FD FD + G IS E + + +LG+ +K E+
Sbjct: 5 DQQAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEE 64
Query: 80 IDTDKDGYIDFKEFIEMM-HDMGDNRVKKND--IQGAFQLFDLNGDKKISAEELMEVLRK 136
+D D G IDF+EF+ MM M ++ K++ ++ F++FD N D I EEL E+LR
Sbjct: 65 VDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELEDCFRIFDKNADGFIDIEELGEILRA 124
Query: 137 MGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
GE + + +++ D + DG ID DEF+ MM
Sbjct: 125 TGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMM 158
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 109 DIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMT 168
+ + AF +FD +G IS +EL V+R +G+ + + +I VD DG G ID +EF+
Sbjct: 21 EFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLV 80
Query: 169 MMTRNVK 175
MM R +K
Sbjct: 81 MMVRQMK 87
>pdb|1TCF|A Chain A, Crystal Structure Of Calcium-Saturated Rabbit Skeletal
Troponin C
pdb|1TN4|A Chain A, Four Calcium Tnc
pdb|2TN4|A Chain A, Four Calcium Tnc
Length = 159
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 78/158 (49%), Gaps = 13/158 (8%)
Query: 21 RQNPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFI 80
+Q + S + E + FD FD + G IS E + + +LG+ +K E+ +
Sbjct: 3 QQAEARSYLSEEMIAEFKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEEV 62
Query: 81 DTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQG--------AFQLFDLNGDKKISAEELME 132
D D G IDF+EF+ MM R K D +G F++FD N D I AEEL E
Sbjct: 63 DEDGSGTIDFEEFLVMMV-----RQMKEDAKGKSEEELAELFRIFDRNADGYIDAEELAE 117
Query: 133 VLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
+ R GE + + +++ D + DG ID DEF+ MM
Sbjct: 118 IFRASGEHVTDEEIESLMKDGDKNNDGRIDFDEFLKMM 155
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 109 DIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMT 168
+ + AF +FD +G IS +EL V+R +G+ + + +I VD DG G ID +EF+
Sbjct: 18 EFKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLV 77
Query: 169 MMTRNVK 175
MM R +K
Sbjct: 78 MMVRQMK 84
>pdb|1YTZ|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Activated State
pdb|1YV0|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Free State
pdb|1NCX|A Chain A, Troponin C
pdb|1NCY|A Chain A, Troponin-C, Complex With Manganese
pdb|1NCZ|A Chain A, Troponin C
pdb|1TOP|A Chain A, Structure Of Chicken Skeletal Muscle Troponin-C At 1.78
Angstroms Resolution
Length = 162
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 79/159 (49%), Gaps = 13/159 (8%)
Query: 20 ERQNPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRF 79
++Q + S + E + FD FD + G IS E + + +LG+ +K E+
Sbjct: 5 DQQAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEE 64
Query: 80 IDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQG--------AFQLFDLNGDKKISAEELM 131
+D D G IDF+EF+ MM R K D +G F++FD N D I EEL
Sbjct: 65 VDEDGSGTIDFEEFLVMMV-----RQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELG 119
Query: 132 EVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
E+LR GE + + +++ D + DG ID DEF+ MM
Sbjct: 120 EILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMM 158
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 109 DIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMT 168
+ + AF +FD +G IS +EL V+R +G+ + + +I VD DG G ID +EF+
Sbjct: 21 EFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLV 80
Query: 169 MMTRNVK 175
MM R +K
Sbjct: 81 MMVRQMK 87
>pdb|4TNC|A Chain A, Refined Structure Of Chicken Skeletal Muscle Troponin C In
The Two-Calcium State At 2-Angstroms Resolution
Length = 162
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 79/159 (49%), Gaps = 13/159 (8%)
Query: 20 ERQNPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRF 79
++Q + S + E + FD FD + G IS E + + +LG+ +K E+
Sbjct: 5 DQQAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEE 64
Query: 80 IDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQG--------AFQLFDLNGDKKISAEELM 131
+D D G IDF+EF+ MM R K D +G F++FD N D I EEL
Sbjct: 65 VDEDGSGTIDFEEFLVMMV-----RQMKEDAKGKSEEELADCFRIFDKNADGFIDIEELG 119
Query: 132 EVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
E+LR GE + + +++ D + DG ID DEF+ MM
Sbjct: 120 EILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMM 158
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 109 DIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMT 168
+ + AF +FD +G IS +EL V+R +G+ + + +I VD DG G ID +EF+
Sbjct: 21 EFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLV 80
Query: 169 MMTRNVK 175
MM R +K
Sbjct: 81 MMVRQMK 87
>pdb|1XFX|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
Length = 149
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 75/142 (52%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + LG+ ++AE+ +D D +G ID
Sbjct: 6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVXRSLGQNPTEAELQDXINEVDADGNGTID 65
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ + + +I+ AF++FD +G+ ISA EL V +GEK + + +
Sbjct: 66 FPEFLTXXARKXKDTDSEEEIREAFRVFDKDGNGYISAAELRHVXTNLGEKLTDEEVDQX 125
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ T
Sbjct: 126 IREADIDGDGQVNYEEFVQXXT 147
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V R +G+ + + I VDADG+G ID EF+T R
Sbjct: 16 AFSLFDKDGDGTITTKELGTVXRSLGQNPTEAELQDXINEVDADGNGTIDFPEFLTXXAR 75
Query: 173 NVK 175
K
Sbjct: 76 KXK 78
>pdb|2W49|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 159
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 79/159 (49%), Gaps = 13/159 (8%)
Query: 20 ERQNPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRF 79
++Q + S + E + FD FD + G IS E + + +LG+ +K E+
Sbjct: 2 DQQAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEE 61
Query: 80 IDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQG--------AFQLFDLNGDKKISAEELM 131
+D D G IDF+EF+ MM R K D +G F++FD N D I EEL
Sbjct: 62 VDEDGSGTIDFEEFLVMMV-----RQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELG 116
Query: 132 EVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
E+LR GE + + +++ D + DG ID DEF+ MM
Sbjct: 117 EILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMM 155
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 109 DIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMT 168
+ + AF +FD +G IS +EL V+R +G+ + + +I VD DG G ID +EF+
Sbjct: 18 EFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLV 77
Query: 169 MMTRNVK 175
MM R +K
Sbjct: 78 MMVRQMK 84
>pdb|3EKJ|A Chain A, Calcium-Free Gcamp2 (Calcium Binding Deficient Mutant)
Length = 449
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 79/142 (55%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ + + + LG+ ++AE+ + D +G ID
Sbjct: 306 TEEQIAEFKEAFSLFDKDGDGGITTKQLGTVMRSLGQNPTEAELQDMINEVGADGNGTID 365
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F +F+ MM + + +I+ AF++F +G+ ISA +L V+ +GEK + + +M
Sbjct: 366 FPQFLTMMARKMKDTDSEEEIREAFRVFGKDGNGYISAAQLRHVMTNLGEKLTDEEVDEM 425
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR DGDG ++ ++F+ MMT
Sbjct: 426 IREAGIDGDGQVNYEQFVQMMT 447
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ ++L V+R +G+ + + MI V ADG+G ID +F+TMM R
Sbjct: 316 AFSLFDKDGDGGITTKQLGTVMRSLGQNPTEAELQDMINEVGADGNGTIDFPQFLTMMAR 375
Query: 173 NVK 175
+K
Sbjct: 376 KMK 378
>pdb|3QRX|A Chain A, Chlamydomonas Reinhardtii Centrin Bound To Melittin
Length = 169
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 75/139 (53%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
QE+R+ FD FDT+ G I E A+ LG K E+ K ID D G IDF+EF+
Sbjct: 28 QEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFL 87
Query: 95 EMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVD 154
MM R + +I AF+LFD + I+ ++L V +++GE + + ++MI D
Sbjct: 88 TMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEAD 147
Query: 155 ADGDGLIDMDEFMTMMTRN 173
+ D ID DEF+ +M +
Sbjct: 148 RNDDNEIDEDEFIRIMKKT 166
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 100 MGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDG 159
+G +K +I+ AF LFD +G I A+EL +R +G + + +KMI +D DG G
Sbjct: 20 VGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSG 79
Query: 160 LIDMDEFMTMMT 171
ID +EF+TMMT
Sbjct: 80 TIDFEEFLTMMT 91
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%)
Query: 31 RSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDF 90
R + +E+ + F FD + G I+ + LG+ +++ E+ + D + D ID
Sbjct: 97 RDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDE 156
Query: 91 KEFIEMM 97
EFI +M
Sbjct: 157 DEFIRIM 163
>pdb|1NIW|A Chain A, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|C Chain C, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|E Chain E, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|G Chain G, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1QX7|I Chain I, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|R Chain R, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|A Chain A, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|B Chain B, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|M Chain M, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
Length = 148
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 75/142 (52%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + LG+ ++AE+ +D D +G ID
Sbjct: 5 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVXRSLGQNPTEAELQDXINEVDADGNGTID 64
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ + + +I+ AF++FD +G+ ISA EL V +GEK + + +
Sbjct: 65 FPEFLTXXARKXKDTDSEEEIREAFRVFDKDGNGYISAAELRHVXTNLGEKLTDEEVDEX 124
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ T
Sbjct: 125 IREADIDGDGQVNYEEFVQXXT 146
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V R +G+ + + I VDADG+G ID EF+T R
Sbjct: 15 AFSLFDKDGDGTITTKELGTVXRSLGQNPTEAELQDXINEVDADGNGTIDFPEFLTXXAR 74
Query: 173 NVK 175
K
Sbjct: 75 KXK 77
>pdb|3OX6|A Chain A, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|B Chain B, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|C Chain C, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|D Chain D, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|E Chain E, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|F Chain F, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
Length = 153
Score = 79.3 bits (194), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 86/148 (58%), Gaps = 13/148 (8%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
++E+R+ F +FD +KDG I+ + + + +G ++ E+ + + I+ + G++DF +F
Sbjct: 10 IEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDF 69
Query: 94 IEMM--------HDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRK-MGEKYSLD 144
+E+M DM + +++ AF+ FD NGD +IS EL E +R +G +
Sbjct: 70 VELMGPKLLAETADM----IGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHR 125
Query: 145 SCRKMIRGVDADGDGLIDMDEFMTMMTR 172
++IR VD +GDG +D +EF+ MM+R
Sbjct: 126 DIEEIIRDVDLNGDGRVDFEEFVRMMSR 153
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 29 ASRSNVQEMRQVFDKFDTNKDGKISQDEYNSAL-SVLGKGISKAEMAKSFRFIDTDKDGY 87
A V+E+R F +FDTN DG+IS E A+ ++LG + ++ + R +D + DG
Sbjct: 82 ADMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGR 141
Query: 88 IDFKEFIEMM 97
+DF+EF+ MM
Sbjct: 142 VDFEEFVRMM 151
>pdb|1TNW|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
pdb|1TNX|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
Length = 162
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 20 ERQNPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRF 79
++Q + S + E + FD FD + G IS E + + +LG+ +K E+
Sbjct: 5 DQQAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEE 64
Query: 80 IDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQG--------AFQLFDLNGDKKISAEELM 131
+D D G IDF+EF+ MM R K D +G F++FD N D I EEL
Sbjct: 65 VDEDGSGTIDFEEFLVMMV-----RQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELG 119
Query: 132 EVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
E+LR GE + +++ D + DG ID DEF+ MM
Sbjct: 120 EILRATGEHVIEEDIEDLMKDSDKNNDGRIDFDEFLKMM 158
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 109 DIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMT 168
+ + AF +FD +G IS +EL V+R +G+ + + +I VD DG G ID +EF+
Sbjct: 21 EFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLV 80
Query: 169 MMTRNVK 175
MM R +K
Sbjct: 81 MMVRQMK 87
>pdb|4DS7|A Chain A, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|B Chain B, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|C Chain C, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|D Chain D, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
Length = 147
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 79/143 (55%), Gaps = 9/143 (6%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
+ E ++ F FD + G IS E + + LG S+AE+A ID D + I+F EF
Sbjct: 10 IAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEF 69
Query: 94 IEMMHDMGDNRVKKND----IQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
+ +M ++K ND + AF++FD NGD ISA EL VL +GEK + +M
Sbjct: 70 LALM----SRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEM 125
Query: 150 IRGVDADGDGLIDMDEFMTMMTR 172
+R V +DG G I++ +F ++++
Sbjct: 126 LREV-SDGSGEINIKQFAALLSK 147
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD + ISA EL V+R +G S ++ +D DG+ I+ EF+ +M+R
Sbjct: 16 AFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALMSR 75
Query: 173 NVKV 176
+K
Sbjct: 76 QLKC 79
>pdb|1Y6W|A Chain A, Trapped Intermediate Of Calmodulin
Length = 148
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 74/142 (52%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + LG ++AE+ +D D +G I+
Sbjct: 5 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVXRSLGCNPTEAELQDXINEVDADGNGTIN 64
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ + + +I+ AF++FD +G+ ISA EL V +GEK + + +
Sbjct: 65 FPEFLTXXARCXKDTDSEEEIREAFRVFDKDGNGYISAAELRHVXTNLGEKLTDEEVDEX 124
Query: 150 IRGVDADGDGLIDMDEFMTMMT 171
IR D DGDG ++ +EF+ T
Sbjct: 125 IREADIDGDGQVNYEEFVQXXT 146
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V R +G + + I VDADG+G I+ EF+T R
Sbjct: 15 AFSLFDKDGDGTITTKELGTVXRSLGCNPTEAELQDXINEVDADGNGTINFPEFLTXXAR 74
Query: 173 NVK 175
K
Sbjct: 75 CXK 77
>pdb|1LKJ|A Chain A, Nmr Structure Of Apo Calmodulin From Yeast Saccharomyces
Cerevisiae
Length = 146
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 76/139 (54%), Gaps = 1/139 (0%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
+ E ++ F FD + +G IS E + + LG S+AE+ ID D + I+F EF
Sbjct: 9 IAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEF 68
Query: 94 IEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGV 153
+ +M + + ++ AF++FD NGD ISA EL VL +GEK + M+R V
Sbjct: 69 LALMSRQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREV 128
Query: 154 DADGDGLIDMDEFMTMMTR 172
+DG G I++ +F ++++
Sbjct: 129 -SDGSGEINIQQFAALLSK 146
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD + + IS+ EL V+R +G S ++ +D DG+ I+ EF+ +M+R
Sbjct: 15 AFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMSR 74
Query: 173 NVK 175
+K
Sbjct: 75 QLK 77
>pdb|2LHI|A Chain A, Solution Structure Of Ca2+CNA1 PEPTIDE-Bound Ycam
Length = 176
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 76/139 (54%), Gaps = 1/139 (0%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
+ E ++ F FD + +G IS E + + LG S+AE+ ID D + I+F EF
Sbjct: 10 IAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEF 69
Query: 94 IEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGV 153
+ +M + + ++ AF++FD NGD ISA EL VL +GEK + M+R V
Sbjct: 70 LALMSRQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREV 129
Query: 154 DADGDGLIDMDEFMTMMTR 172
+DG G I++ +F ++++
Sbjct: 130 -SDGSGEINIQQFAALLSK 147
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD + + IS+ EL V+R +G S ++ +D DG+ I+ EF+ +M+R
Sbjct: 16 AFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMSR 75
Query: 173 NVK 175
+K
Sbjct: 76 QLK 78
>pdb|2LMT|A Chain A, Nmr Structure Of Androcam
pdb|2LMU|A Chain A, Androcam At High Calcium
pdb|2LMV|A Chain A, Androcam At High Calcium With Three Explicit Ca2+
Length = 148
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 79/143 (55%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E + F +FD GKI+ E + + LG+ ++AE+ + + +G ++
Sbjct: 5 TEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTLGQNPTEAELQDLIAEAENNNNGQLN 64
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF +M + +++ AF++FD +GD IS EL V+ +GEK + + +M
Sbjct: 65 FTEFCGIMAKQMRETDTEEEMREAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEM 124
Query: 150 IRGVDADGDGLIDMDEFMTMMTR 172
IR D DGDG+I+ +EF+ M+++
Sbjct: 125 IREADFDGDGMINYEEFVWMISQ 147
>pdb|2L1W|A Chain A, The Solution Structure Of Soybean Calmodulin Isoform 4
Complexed With The Vacuolar Calcium Atpase Bca1 Peptide
Length = 149
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 79/141 (56%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
S + + ++ F FD + DG I+ +E + + L + ++ E+ +D D +G I+
Sbjct: 5 SEEQIVDFKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIE 64
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F EF+ +M + + +++ AF++FD + + ISA EL V+ +GEK + + +M
Sbjct: 65 FDEFLSLMAKKVKDTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQM 124
Query: 150 IRGVDADGDGLIDMDEFMTMM 170
I+ D DGDG ++ +EF+ MM
Sbjct: 125 IKEADLDGDGQVNYEEFVKMM 145
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 109 DIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMT 168
D + AF LFD +GD I+ EEL V+R + + + + + MI VDADG+G I+ DEF++
Sbjct: 11 DFKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIEFDEFLS 70
Query: 169 MMTRNVK 175
+M + VK
Sbjct: 71 LMAKKVK 77
>pdb|2OBH|A Chain A, Centrin-Xpc Peptide
pdb|2OBH|B Chain B, Centrin-Xpc Peptide
Length = 143
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 73/138 (52%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
QE+R+ FD FD + G I E A+ LG K E+ K ID + G ++F +F+
Sbjct: 6 QEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFL 65
Query: 95 EMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVD 154
+M + K +I AF+LFD + KIS + L V +++GE + + ++MI D
Sbjct: 66 TVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEAD 125
Query: 155 ADGDGLIDMDEFMTMMTR 172
DGDG + EF+ +M +
Sbjct: 126 RDGDGEVSEQEFLRIMKK 143
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%)
Query: 106 KKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDE 165
+K +I+ AF LFD +G I +EL +R +G + + +KMI +D +G G ++ +
Sbjct: 4 QKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGD 63
Query: 166 FMTMMTRNV 174
F+T+MT+ +
Sbjct: 64 FLTVMTQKM 72
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 29 ASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYI 88
+ + +E+ + F FD ++ GKIS LG+ ++ E+ + D D DG +
Sbjct: 73 SEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEV 132
Query: 89 DFKEFIEMM 97
+EF+ +M
Sbjct: 133 SEQEFLRIM 141
>pdb|3L19|A Chain A, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
pdb|3L19|B Chain B, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
Length = 214
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 28/183 (15%)
Query: 3 FQESPQLNQPPKESMPKERQNPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALS 62
FQ S +L Q M + S+ +E+ +F D N DG++ + E S
Sbjct: 38 FQNSQKLAQAALLYMASKL-------TSQEETKELTDIFRHIDKNGDGQLDRQELIDGYS 90
Query: 63 VL-GKGIS-------KAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAF 114
L G+ ++ ++E+ D D++GYID+ EF+ + D + + K+ ++ AF
Sbjct: 91 KLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSEFVTVAMDR-KSLLSKDKLESAF 149
Query: 115 QLFDLNGDKKISAEELMEVLRKMGEKYSLD-----SCRKMIRGVDADGDGLIDMDEFMTM 169
Q FD +G+ KIS +EL V + LD + ++MI G+D++ DG +D +EF M
Sbjct: 150 QKFDQDGNGKISVDELASV-------FGLDHLESKTWKEMISGIDSNNDGDVDFEEFCKM 202
Query: 170 MTR 172
+ +
Sbjct: 203 IQK 205
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 25 SVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDK 84
++ R S + ++ F KFD + +GKIS DE S + + + ID++
Sbjct: 133 AMDRKSLLSKDKLESAFQKFDQDGNGKISVDELASVFGL--DHLESKTWKEMISGIDSNN 190
Query: 85 DGYIDFKEFIEMMHDMGDN 103
DG +DF+EF +M+ + N
Sbjct: 191 DGDVDFEEFCKMIQKLCSN 209
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 28/183 (15%)
Query: 3 FQESPQLNQPPKESMPKERQNPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALS 62
FQ S +L Q M + S+ +E+ +F D N DG++ + E S
Sbjct: 321 FQNSQKLAQAALLYMASKL-------TSQEETKELTDIFRHIDKNGDGQLDRQELIDGYS 373
Query: 63 VL-GKGIS-------KAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAF 114
L G+ ++ ++E+ D D++GYID+ EF+ + D + + K+ ++ AF
Sbjct: 374 KLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSEFVTVAMDR-KSLLSKDKLESAF 432
Query: 115 QLFDLNGDKKISAEELMEVLRKMGEKYSLD-----SCRKMIRGVDADGDGLIDMDEFMTM 169
Q FD +G+ KIS +EL V + LD + ++MI G+D++ DG +D +EF M
Sbjct: 433 QKFDQDGNGKISVDELASV-------FGLDHLESKTWKEMISGIDSNNDGDVDFEEFCKM 485
Query: 170 MTR 172
+ +
Sbjct: 486 IQK 488
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 28 RASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGY 87
R S + ++ F KFD + +GKIS DE S + + + ID++ DG
Sbjct: 419 RKSLLSKDKLESAFQKFDQDGNGKISVDELASVFGL--DHLESKTWKEMISGIDSNNDGD 476
Query: 88 IDFKEFIEMMHDMGDN 103
+DF+EF +M+ + N
Sbjct: 477 VDFEEFCKMIQKLCSN 492
>pdb|1AJ4|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 1
Structure
Length = 161
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 4/151 (2%)
Query: 24 PSVPRASRSNVQEMRQVFDKFDTN-KDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDT 82
+V + + E + FD F +DG IS E + +LG+ + E+ + +D
Sbjct: 7 AAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDE 66
Query: 83 DKDGYIDFKEFIEMM-HDMGDNRVKKND--IQGAFQLFDLNGDKKISAEELMEVLRKMGE 139
D G +DF EF+ MM M D+ K + + F++FD N D I EEL +L+ GE
Sbjct: 67 DGSGTVDFDEFLVMMVRSMKDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQATGE 126
Query: 140 KYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
+ D ++++ D + DG ID DEF+ M
Sbjct: 127 TITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 106 KKNDIQGAFQLFDLNG-DKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMD 164
+KN+ + AF +F L D IS +EL +V+R +G+ + + ++MI VD DG G +D D
Sbjct: 16 QKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD 75
Query: 165 EFMTMMTRNVK 175
EF+ MM R++K
Sbjct: 76 EFLVMMVRSMK 86
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 13/118 (11%)
Query: 22 QNPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEY----NSALSVLGKGISKAEMAKSF 77
QNP+ P +E++++ D+ D + G + DE+ ++ KG ++ E++ F
Sbjct: 50 QNPT-P-------EELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKTEEELSDLF 101
Query: 78 RFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLR 135
R D + DGYID +E M+ G+ + ++DI+ + D N D +I +E +E ++
Sbjct: 102 RMFDKNADGYIDLEELKIMLQATGET-ITEDDIEELMKDGDKNNDGRIDYDEFLEFMK 158
>pdb|1DTL|A Chain A, Crystal Structure Of Calcium-Saturated (3ca2+) Cardiac
Troponin C Complexed With The Calcium Sensitizer
Bepridil At 2.15 A Resolution
pdb|1J1D|A Chain A, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1D|D Chain D, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|A Chain A, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|D Chain D, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 161
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Query: 24 PSVPRASRSNVQEMRQVFDKFDTN-KDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDT 82
+V + + E + FD F +DG IS E + +LG+ + E+ + +D
Sbjct: 7 AAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDE 66
Query: 83 DKDGYIDFKEFIEMM-HDMGDNRVKKND--IQGAFQLFDLNGDKKISAEELMEVLRKMGE 139
D G +DF EF+ MM M D+ K++ + F++FD N D I EEL +L+ GE
Sbjct: 67 DGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGE 126
Query: 140 KYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
+ D ++++ D + DG ID DEF+ M
Sbjct: 127 TITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 106 KKNDIQGAFQLFDLNG-DKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMD 164
+KN+ + AF +F L D IS +EL +V+R +G+ + + ++MI VD DG G +D D
Sbjct: 16 QKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD 75
Query: 165 EFMTMMTRNVK 175
EF+ MM R++K
Sbjct: 76 EFLVMMVRSMK 86
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 13/118 (11%)
Query: 22 QNPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEY----NSALSVLGKGISKAEMAKSF 77
QNP+ P +E++++ D+ D + G + DE+ ++ KG S+ E++ F
Sbjct: 50 QNPT-P-------EELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLF 101
Query: 78 RFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLR 135
R D + DGYID +E M+ G+ + ++DI+ + D N D +I +E +E ++
Sbjct: 102 RMFDKNADGYIDLEELKIMLQATGET-ITEDDIEELMKDGDKNNDGRIDYDEFLEFMK 158
>pdb|2LHH|A Chain A, Solution Structure Of Ca2+-Bound Ycam
Length = 128
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 59/109 (54%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
+ E ++ F FD + +G IS E + + LG S+AE+ ID D + I+F EF
Sbjct: 9 IAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEF 68
Query: 94 IEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYS 142
+ +M + + ++ AF++FD NGD ISA EL VL +GEK +
Sbjct: 69 LALMSRQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLT 117
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD + + IS+ EL V+R +G S ++ +D DG+ I+ EF+ +M+R
Sbjct: 15 AFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMSR 74
Query: 173 NVK 175
+K
Sbjct: 75 QLK 77
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEM 73
QE+ + F FD N DG IS E L+ +G+ ++ AE+
Sbjct: 83 QELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEL 121
>pdb|3FWB|A Chain A, Sac3:sus1:cdc31 Complex
pdb|3FWC|A Chain A, Sac3:sus1:cdc31 Complex
pdb|3FWC|E Chain E, Sac3:sus1:cdc31 Complex
pdb|3FWC|I Chain I, Sac3:sus1:cdc31 Complex
pdb|3FWC|M Chain M, Sac3:sus1:cdc31 Complex
Length = 161
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 71/137 (51%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
QE+ + F FD N DG + E A+ LG + K E+ D++ + + +F
Sbjct: 23 QEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFY 82
Query: 95 EMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVD 154
+M + R ++I+ AFQLFD + KIS + L V +++GE + + R MI D
Sbjct: 83 IVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFD 142
Query: 155 ADGDGLIDMDEFMTMMT 171
DGDG I+ +EF+ + T
Sbjct: 143 LDGDGEINENEFIAICT 159
Score = 33.5 bits (75), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 31 RSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDF 90
R + E+++ F FD + GKIS LG+ ++ E+ D D DG I+
Sbjct: 92 RDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEINE 151
Query: 91 KEFIEMMHD 99
EFI + D
Sbjct: 152 NEFIAICTD 160
Score = 32.7 bits (73), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%)
Query: 106 KKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDE 165
+K +I AF LFD+N D + EL ++ +G + +I D++G L+ D+
Sbjct: 21 QKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDD 80
Query: 166 FMTMMTRNV 174
F +M +
Sbjct: 81 FYIVMGEKI 89
>pdb|1LA0|A Chain A, Solution Structure Of Calcium Saturated Cardiac Troponin C
In The Troponin C-Troponin I Complex
Length = 161
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 14/156 (8%)
Query: 24 PSVPRASRSNVQEMRQVFDKFDTN-KDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDT 82
+V + + E + FD F +DG IS E + +LG+ + E+ + +D
Sbjct: 7 AAVEQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDE 66
Query: 83 DKDGYIDFKEFIEMMHDMGDNRVKKNDIQG--------AFQLFDLNGDKKISAEELMEVL 134
D G +DF EF+ MM R K+D +G F++FD N D I EEL +L
Sbjct: 67 DGSGTVDFDEFLVMMV-----RCMKDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIML 121
Query: 135 RKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
+ GE + D ++++ D + DG ID DEF+ M
Sbjct: 122 QATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 106 KKNDIQGAFQLFDLNG-DKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMD 164
+KN+ + AF +F L D IS +EL +V+R +G+ + + ++MI VD DG G +D D
Sbjct: 16 QKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD 75
Query: 165 EFMTMMTRNVK 175
EF+ MM R +K
Sbjct: 76 EFLVMMVRCMK 86
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 13/118 (11%)
Query: 22 QNPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVL----GKGISKAEMAKSF 77
QNP+ P +E++++ D+ D + G + DE+ + KG ++ E++ F
Sbjct: 50 QNPT-P-------EELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKTEEELSDLF 101
Query: 78 RFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLR 135
R D + DGYID +E M+ G+ + ++DI+ + D N D +I +E +E ++
Sbjct: 102 RMFDKNADGYIDLEELKIMLQATGET-ITEDDIEELMKDGDKNNDGRIDYDEFLEFMK 158
>pdb|3DTP|E Chain E, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
pdb|3DTP|F Chain F, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 196
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 5/146 (3%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
++ VQE ++ F D +KDG IS+++ + LG+ ++ E+ + + G I+
Sbjct: 52 TQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDS----MVAEAPGPIN 107
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F F+ + D +++ I AF LFD GD K E L L GEK+S D +
Sbjct: 108 FTMFLTIFGDRIAGTDEEDVIVNAFNLFD-EGDGKCKEETLKRSLTTWGEKFSQDEVDQA 166
Query: 150 IRGVDADGDGLIDMDEFMTMMTRNVK 175
+ DG+GLID+ +F ++T+ K
Sbjct: 167 LSEAPIDGNGLIDIKKFAQILTKGAK 192
>pdb|2AAO|A Chain A, Regulatory Apparatus Of Calcium Dependent Protein Kinase
From Arabidopsis Thaliana
pdb|2AAO|B Chain B, Regulatory Apparatus Of Calcium Dependent Protein Kinase
From Arabidopsis Thaliana
Length = 166
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 76/142 (53%), Gaps = 9/142 (6%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
S + +++ F+ D +K G+I+ +E + L +G + ++E+ + D D G ID
Sbjct: 22 SEEEIAGLKEXFNXIDADKSGQITFEELKAGLKRVGANLKESEILDLXQAADVDNSGTID 81
Query: 90 FKEFIEMMHDMGDNRVKKND-IQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCR- 147
+KEFI + N++++ D + AF FD +G I+ +EL + E++ ++ R
Sbjct: 82 YKEFIAATLHL--NKIEREDHLFAAFTYFDKDGSGYITPDELQQAC----EEFGVEDVRI 135
Query: 148 -KMIRGVDADGDGLIDMDEFMT 168
++ R VD D DG ID +EF+
Sbjct: 136 EELXRDVDQDNDGRIDYNEFVA 157
>pdb|2JT0|A Chain A, Solution Structure Of F104w Cardiac Troponin C
Length = 161
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Query: 24 PSVPRASRSNVQEMRQVFDKFDTN-KDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDT 82
+V + + E + FD F +DG IS E + +LG+ + E+ + +D
Sbjct: 7 AAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDE 66
Query: 83 DKDGYIDFKEFIEMM-HDMGDNRVKKND--IQGAFQLFDLNGDKKISAEELMEVLRKMGE 139
D G +DF EF+ MM M D+ K++ + F+++D N D I +EL +L+ GE
Sbjct: 67 DGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMWDKNADGYIDLDELKIMLQATGE 126
Query: 140 KYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
+ D ++++ D + DG ID DEF+ M
Sbjct: 127 TITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 106 KKNDIQGAFQLFDLNG-DKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMD 164
+KN+ + AF +F L D IS +EL +V+R +G+ + + ++MI VD DG G +D D
Sbjct: 16 QKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD 75
Query: 165 EFMTMMTRNVK 175
EF+ MM R++K
Sbjct: 76 EFLVMMVRSMK 86
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 13/118 (11%)
Query: 22 QNPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEY----NSALSVLGKGISKAEMAKSF 77
QNP+ P +E++++ D+ D + G + DE+ ++ KG S+ E++ F
Sbjct: 50 QNPT-P-------EELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLF 101
Query: 78 RFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLR 135
R D + DGYID E M+ G+ + ++DI+ + D N D +I +E +E ++
Sbjct: 102 RMWDKNADGYIDLDELKIMLQATGET-ITEDDIEELMKDGDKNNDGRIDYDEFLEFMK 158
>pdb|2JT3|A Chain A, Solution Structure Of F153w Cardiac Troponin C
Length = 161
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Query: 24 PSVPRASRSNVQEMRQVFDKFDTN-KDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDT 82
+V + + E + FD F +DG IS E + +LG+ + E+ + +D
Sbjct: 7 AAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDE 66
Query: 83 DKDGYIDFKEFIEMM-HDMGDNRVKKND--IQGAFQLFDLNGDKKISAEELMEVLRKMGE 139
D G +DF EF+ MM M D+ K++ + F++FD N D I +EL +L+ GE
Sbjct: 67 DGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGE 126
Query: 140 KYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
+ D ++++ D + DG ID DE++ M
Sbjct: 127 TITEDDIEELMKDGDKNNDGRIDYDEWLEFM 157
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 106 KKNDIQGAFQLFDLNG-DKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMD 164
+KN+ + AF +F L D IS +EL +V+R +G+ + + ++MI VD DG G +D D
Sbjct: 16 QKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD 75
Query: 165 EFMTMMTRNVK 175
EF+ MM R++K
Sbjct: 76 EFLVMMVRSMK 86
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 13/118 (11%)
Query: 22 QNPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEY----NSALSVLGKGISKAEMAKSF 77
QNP+ P +E++++ D+ D + G + DE+ ++ KG S+ E++ F
Sbjct: 50 QNPT-P-------EELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLF 101
Query: 78 RFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLR 135
R D + DGYID E M+ G+ + ++DI+ + D N D +I +E +E ++
Sbjct: 102 RMFDKNADGYIDLDELKIMLQATGET-ITEDDIEELMKDGDKNNDGRIDYDEWLEFMK 158
>pdb|1SW8|A Chain A, Solution Structure Of The N-Terminal Domain Of Human N60d
Calmodulin Refined With Paramagnetism Based Strategy
Length = 79
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADGDG ID EF+TMM R
Sbjct: 15 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMAR 74
Query: 173 NVK 175
+K
Sbjct: 75 KMK 77
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D DG ID
Sbjct: 5 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTID 64
Query: 90 FKEFIEMM 97
F EF+ MM
Sbjct: 65 FPEFLTMM 72
>pdb|2JTZ|A Chain A, Solution Structure And Chemical Shift Assignments Of The
F104-To-5-Flurotryptophan Mutant Of Cardiac Troponin C
Length = 161
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 4/151 (2%)
Query: 24 PSVPRASRSNVQEMRQVFDKFDTN-KDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDT 82
+V + + E + FD F +DG IS E + +LG+ + E+ + +D
Sbjct: 7 AAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDE 66
Query: 83 DKDGYIDFKEFIEMM-HDMGDNRVKKND--IQGAFQLFDLNGDKKISAEELMEVLRKMGE 139
D G +DF EF+ MM M D+ K++ + F++ D N D I +EL +L+ GE
Sbjct: 67 DGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMXDKNADGYIDLDELKIMLQATGE 126
Query: 140 KYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
+ D ++++ D + DG ID DEF+ M
Sbjct: 127 TITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 106 KKNDIQGAFQLFDLNG-DKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMD 164
+KN+ + AF +F L D IS +EL +V+R +G+ + + ++MI VD DG G +D D
Sbjct: 16 QKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD 75
Query: 165 EFMTMMTRNVK 175
EF+ MM R++K
Sbjct: 76 EFLVMMVRSMK 86
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 13/118 (11%)
Query: 22 QNPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEY----NSALSVLGKGISKAEMAKSF 77
QNP+ P +E++++ D+ D + G + DE+ ++ KG S+ E++ F
Sbjct: 50 QNPT-P-------EELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLF 101
Query: 78 RFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLR 135
R D + DGYID E M+ G+ + ++DI+ + D N D +I +E +E ++
Sbjct: 102 RMXDKNADGYIDLDELKIMLQATGET-ITEDDIEELMKDGDKNNDGRIDYDEFLEFMK 158
>pdb|2JT8|A Chain A, Solution Structure Of The F153-To-5-Flurotryptophan Mutant
Of Human Cardiac Troponin C
Length = 161
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 4/151 (2%)
Query: 24 PSVPRASRSNVQEMRQVFDKFDTN-KDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDT 82
+V + + E + FD F +DG IS E + +LG+ + E+ + +D
Sbjct: 7 AAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDE 66
Query: 83 DKDGYIDFKEFIEMM-HDMGDNRVKKND--IQGAFQLFDLNGDKKISAEELMEVLRKMGE 139
D G +DF EF+ MM M D+ K++ + F++FD N D I +EL +L+ GE
Sbjct: 67 DGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGE 126
Query: 140 KYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
+ D ++++ D + DG ID DE + M
Sbjct: 127 TITEDDIEELMKDGDKNNDGRIDYDEXLEFM 157
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 106 KKNDIQGAFQLFDLNG-DKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMD 164
+KN+ + AF +F L D IS +EL +V+R +G+ + + ++MI VD DG G +D D
Sbjct: 16 QKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD 75
Query: 165 EFMTMMTRNVK 175
EF+ MM R++K
Sbjct: 76 EFLVMMVRSMK 86
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 13/118 (11%)
Query: 22 QNPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEY----NSALSVLGKGISKAEMAKSF 77
QNP+ P +E++++ D+ D + G + DE+ ++ KG S+ E++ F
Sbjct: 50 QNPT-P-------EELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLF 101
Query: 78 RFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLR 135
R D + DGYID E M+ G+ + ++DI+ + D N D +I +E +E ++
Sbjct: 102 RMFDKNADGYIDLDELKIMLQATGET-ITEDDIEELMKDGDKNNDGRIDYDEXLEFMK 158
>pdb|2JNF|A Chain A, Solution Structure Of Fly Troponin C, Isoform F1
Length = 158
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 77/151 (50%), Gaps = 5/151 (3%)
Query: 26 VPRASRSNVQEMRQVFDKFDT-NKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDK 84
V + S + V+ + F F+T G++S D+ L VLG +K+ + + D
Sbjct: 4 VSKLSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFG 63
Query: 85 DGYIDFKEF----IEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEK 140
+G IDF F + + + + +++ AF+L+D G+ IS + + E+L ++ E
Sbjct: 64 NGDIDFDSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILAELDET 123
Query: 141 YSLDSCRKMIRGVDADGDGLIDMDEFMTMMT 171
S + MI +DADG G +D +EFM +MT
Sbjct: 124 LSSEDLDAMIDEIDADGSGTVDFEEFMGVMT 154
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 100 MGDNRVKKNDIQGAFQLFDL-NGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGD 158
+ N+VK ++ AF+ F+ G ++S +++ +L +G + + + R++I D G+
Sbjct: 7 LSSNQVKL--LETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGN 64
Query: 159 GLIDMDEFMTMMTR 172
G ID D F + R
Sbjct: 65 GDIDFDSFKIIGAR 78
>pdb|1S6I|A Chain A, Ca2+-Regulatory Region (Cld) From Soybean
Calcium-Dependent Protein Kinase-Alpha (Cdpk) In The
Presence Of Ca2+ And The Junction Domain (Jd)
Length = 188
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 9/150 (6%)
Query: 26 VPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKD 85
R S + ++++F DT+ G I+ DE L +G + ++E+ D DK
Sbjct: 1 AERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKS 60
Query: 86 GYIDFKEFIEMMHDMGDNRVKKND-IQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLD 144
G ID+ EFI + N++++ + + AF FD +G I+ +E+ + + G LD
Sbjct: 61 GTIDYGEFIAATVHL--NKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDFG----LD 114
Query: 145 SCR--KMIRGVDADGDGLIDMDEFMTMMTR 172
MI+ +D D DG ID EF MM +
Sbjct: 115 DIHIDDMIKEIDQDNDGQIDYGEFAAMMRK 144
>pdb|2LQC|A Chain A, Nmr Solution Structure Of A Ca2+-Calmodulin With A Binding
Motif (Nscate) Peptide From The N-Terminal Cytoplasmic
Domain Of The L-Type Voltage-Cated Calcium Channel
Alpha1c Subunit
Length = 77
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 15 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 74
Query: 173 NVK 175
+K
Sbjct: 75 KMK 77
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 5 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 64
Query: 90 FKEFIEMM 97
F EF+ MM
Sbjct: 65 FPEFLTMM 72
>pdb|3UCT|A Chain A, Structure Of Mn2+-Bound N-Terminal Domain Of Calmodulin In
The Presence Of Zn2+
pdb|3UCT|B Chain B, Structure Of Mn2+-Bound N-Terminal Domain Of Calmodulin In
The Presence Of Zn2+
pdb|3UCW|A Chain A, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCW|B Chain B, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCW|C Chain C, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCW|D Chain D, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCY|A Chain A, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin In
The Presence Of Zn2+
Length = 79
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 15 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 74
Query: 173 NVK 175
+K
Sbjct: 75 KMK 77
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 5 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 64
Query: 90 FKEFIEMM 97
F EF+ MM
Sbjct: 65 FPEFLTMM 72
>pdb|3IFK|A Chain A, Crystal Structure Of Calcium-Saturated Calmodulin
N-Terminal Domain Fragment, Residues 1-90
pdb|3IFK|B Chain B, Crystal Structure Of Calcium-Saturated Calmodulin
N-Terminal Domain Fragment, Residues 1-90
Length = 90
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 15 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 74
Query: 173 NVK 175
+K
Sbjct: 75 KMK 77
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 5 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 64
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQ 115
F EF+ MM + + +I+ AF+
Sbjct: 65 FPEFLTMMARKMKDTDSEEEIREAFR 90
>pdb|2LLO|A Chain A, Solution Nmr-Derived Structure Of Calmodulin N-Lobe Bound
With Er Alpha Peptide
Length = 80
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 15 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 74
Query: 173 NVK 175
+K
Sbjct: 75 KMK 77
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 5 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 64
Query: 90 FKEFIEMM 97
F EF+ MM
Sbjct: 65 FPEFLTMM 72
>pdb|3B32|A Chain A, Crystal Structure Of Calcium-Saturated Calmodulin
N-Terminal Domain Fragment, Residues 1-75
Length = 75
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 15 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 74
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 5 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 64
Query: 90 FKEFIEMM 97
F EF+ MM
Sbjct: 65 FPEFLTMM 72
>pdb|1AK8|A Chain A, Nmr Solution Structure Of Cerium-Loaded Calmodulin Amino-
Terminal Domain (Ce2-Tr1c), 23 Structures
Length = 76
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 16 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 75
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 65
Query: 90 FKEFIEMM 97
F EF+ MM
Sbjct: 66 FPEFLTMM 73
>pdb|3PM8|A Chain A, Cad Domain Of Pff0520w, Calcium Dependent Protein Kinase
pdb|3PM8|B Chain B, Cad Domain Of Pff0520w, Calcium Dependent Protein Kinase
Length = 197
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 3/141 (2%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
+ +R +F D + G +S E L +G ++ + R ID++ G I + +F
Sbjct: 56 INNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDF 115
Query: 94 IEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVL-RKMGEKYSLD-SCRKMIR 151
+ D +KK F+ FD++G+ KIS EEL + R E +D + +++
Sbjct: 116 LAATID-KQTYLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQ 174
Query: 152 GVDADGDGLIDMDEFMTMMTR 172
VD +GDG ID EFM MM++
Sbjct: 175 EVDLNGDGEIDFHEFMLMMSK 195
>pdb|2GV5|A Chain A, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|B Chain B, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|D Chain D, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|E Chain E, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|A Chain A, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|B Chain B, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|C Chain C, Crystal Structure Of Sfi1pCDC31P COMPLEX
Length = 161
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 67/137 (48%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
QE+ + F FD N DG + E A LG + K E+ D++ + +F
Sbjct: 23 QEIYEAFSLFDXNNDGFLDYHELKVAXKALGFELPKREILDLIDEYDSEGRHLXKYDDFY 82
Query: 95 EMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVD 154
+ + R ++I+ AFQLFD + KIS + L V +++GE + + R I D
Sbjct: 83 IVXGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAXIEEFD 142
Query: 155 ADGDGLIDMDEFMTMMT 171
DGDG I+ +EF+ + T
Sbjct: 143 LDGDGEINENEFIAICT 159
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 31 RSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDF 90
R + E+++ F FD + GKIS LG+ ++ E+ D D DG I+
Sbjct: 92 RDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAXIEEFDLDGDGEINE 151
Query: 91 KEFIEMMHD 99
EFI + D
Sbjct: 152 NEFIAICTD 160
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 106 KKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDE 165
+K +I AF LFD N D + EL + +G + +I D++G L D+
Sbjct: 21 QKQEIYEAFSLFDXNNDGFLDYHELKVAXKALGFELPKREILDLIDEYDSEGRHLXKYDD 80
Query: 166 FMTMMTRNV 174
F + +
Sbjct: 81 FYIVXGEKI 89
>pdb|2ROA|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 4 N-Terminal Domain
Length = 79
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 109 DIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMT 168
D + AF LFD +GD I+ EEL V+R + + + + + MI VDADG+G I+ DEF++
Sbjct: 11 DFKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIEFDEFLS 70
Query: 169 MMTRNVK 175
+M + VK
Sbjct: 71 LMAKKVK 77
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 36/68 (52%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
S + + ++ F FD + DG I+ +E + + L + ++ E+ +D D +G I+
Sbjct: 5 SEEQIVDFKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIE 64
Query: 90 FKEFIEMM 97
F EF+ +M
Sbjct: 65 FDEFLSLM 72
>pdb|2GGM|A Chain A, Human Centrin 2 Xeroderma Pigmentosum Group C Protein
Complex
pdb|2GGM|B Chain B, Human Centrin 2 Xeroderma Pigmentosum Group C Protein
Complex
Length = 172
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 1/158 (0%)
Query: 16 SMPKERQNPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAK 75
S ++R +P P + QE+R+ FD FD + G I E A LG K E+ K
Sbjct: 13 SSQRKRMSPK-PELTEEQKQEIREAFDLFDADGTGTIDVKELKVAXRALGFEPKKEEIKK 71
Query: 76 SFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLR 135
ID + G +F +F+ + + K +I AF+LFD + KIS + L V +
Sbjct: 72 XISEIDKEGTGKXNFGDFLTVXTQKXSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAK 131
Query: 136 KMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRN 173
++GE + + ++ I D DGDG + EF+ + +
Sbjct: 132 ELGENLTDEELQEXIDEADRDGDGEVSEQEFLRIXKKT 169
>pdb|1OE9|B Chain B, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|B Chain B, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|B Chain B, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 151
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 5/142 (3%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTD--KDGY 87
++ ++E ++ F+ FD DGKI + + LG+ + AE+ K +D K
Sbjct: 5 NKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRR 64
Query: 88 IDFKEFIEMMHDMGDNRVKKN--DIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDS 145
+DF+ F+ M+ + NR + D F++FD G+ K+ EL VL +GEK + +
Sbjct: 65 VDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEE 124
Query: 146 CRKMIRGVDADGDGLIDMDEFM 167
++ G + D +G I+ + F+
Sbjct: 125 VETVLAGHE-DSNGCINYEAFL 145
>pdb|1F70|A Chain A, Refined Solution Structure Of Calmodulin N-Terminal Domain
pdb|2PQ3|A Chain A, N-Terminal Calmodulin Zn-Trapped Intermediate
pdb|2KUG|A Chain A, Halothane Binds To Druggable Sites In Calcium-Calmodulin:
Solution Structure Of Halothane-Cam N-Terminal Domain
Length = 76
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 15 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 74
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+ + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G ID
Sbjct: 5 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 64
Query: 90 FKEFIEMM 97
F EF+ MM
Sbjct: 65 FPEFLTMM 72
>pdb|1J7O|A Chain A, Solution Structure Of Calcium-calmodulin N-terminal Domain
Length = 76
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+TMM R
Sbjct: 15 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 74
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 28 RASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGY 87
+ + + E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G
Sbjct: 3 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT 62
Query: 88 IDFKEFIEMM 97
IDF EF+ MM
Sbjct: 63 IDFPEFLTMM 72
>pdb|3K21|A Chain A, Crystal Structure Of Carboxy-Terminus Of Pfc0420w
Length = 191
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 23/156 (14%)
Query: 29 ASRSN---VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRF------ 79
A +SN V++++ F D + G I++++ L KG+ K + + F
Sbjct: 43 AQQSNDYDVEKLKSTFLVLDEDGKGYITKEQ-------LKKGLEKDGLKLPYNFDLLLDQ 95
Query: 80 IDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGE 139
ID+D G ID+ EFI D ++ K I AF++FD++ D +I+ EL +L +
Sbjct: 96 IDSDGSGKIDYTEFIAAALDR--KQLSKKLIYCAFRVFDVDNDGEITTAELAHILYNGNK 153
Query: 140 KYSL-----DSCRKMIRGVDADGDGLIDMDEFMTMM 170
K ++ + ++MIR VD + DG ID EF MM
Sbjct: 154 KGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSEMM 189
>pdb|3KHE|A Chain A, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
pdb|3KHE|B Chain B, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
Length = 191
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 90/192 (46%), Gaps = 33/192 (17%)
Query: 3 FQESPQLNQPPKESMPKERQNPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDE----YN 58
FQ S +L Q M + +E+ Q+F + D N DG++ + E Y
Sbjct: 15 FQSSQKLAQAAMLFMGS-------KLTTLEETKELTQIFRQLDNNGDGQLDRKELIEGYR 67
Query: 59 SALSVLGKGIS-------KAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQ 111
+ G +S +AE+ + +D D++GYI++ EF+ + D + + +
Sbjct: 68 KLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRNGYIEYSEFVTVCMDK-QLLLSRERLL 126
Query: 112 GAFQLFDLNGDKKISAEELMEVLRKMGEKYSL-----DSCRKMIRGVDADGDGLIDMDEF 166
AFQ FD +G KI+ EEL G + + ++ ++++ D + DG +D +EF
Sbjct: 127 AAFQQFDSDGSGKITNEEL-------GRLFGVTEVDDETWHQVLQECDKNNDGEVDFEEF 179
Query: 167 MTMMTR--NVKV 176
+ MM + +VKV
Sbjct: 180 VEMMQKICDVKV 191
>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3,
Tgme49_105860
Length = 467
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 82/161 (50%), Gaps = 26/161 (16%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDE----YNSALSVLGKGIS-------KAEMAKSFRFIDT 82
+E+ Q+F + D N DG++ + E Y + G +S +AE+ + +D
Sbjct: 313 TKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDF 372
Query: 83 DKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYS 142
D++GYI++ EF+ + D + + + AFQ FD +G KI+ EEL G +
Sbjct: 373 DRNGYIEYSEFVTVCMD-KQLLLSRERLLAAFQQFDSDGSGKITNEEL-------GRLFG 424
Query: 143 L-----DSCRKMIRGVDADGDGLIDMDEFMTMMTR--NVKV 176
+ ++ ++++ D + DG +D +EF+ MM + +VKV
Sbjct: 425 VTEVDDETWHQVLQECDKNNDGEVDFEEFVEMMQKICDVKV 465
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
+ + F +FD++ GKI+ +E V + + + D + DG +DF+EF+
Sbjct: 397 ERLLAAFQQFDSDGSGKITNEELGRLFGV--TEVDDETWHQVLQECDKNNDGEVDFEEFV 454
Query: 95 EMMHDMGDNRVK 106
EMM + D +VK
Sbjct: 455 EMMQKICDVKVK 466
>pdb|2AMI|A Chain A, Solution Structure Of The Calcium-Loaded N-Terminal Sensor
Domain Of Centrin
Length = 96
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 100 MGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDG 159
+G +K +I+ AF LFD +G I A+EL +R +G + + +KMI +D DG G
Sbjct: 22 VGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSG 81
Query: 160 LIDMDEFMTMMT 171
ID +EF+TMMT
Sbjct: 82 TIDFEEFLTMMT 93
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 35/63 (55%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
QE+R+ FD FDT+ G I E A+ LG K E+ K ID D G IDF+EF+
Sbjct: 30 QEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFL 89
Query: 95 EMM 97
MM
Sbjct: 90 TMM 92
>pdb|2KSZ|A Chain A, The Solution Structure Of The Magnesium Bound Soybean
Calmod Isoform 4 N-Domain
Length = 76
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 43/66 (65%)
Query: 109 DIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMT 168
D + AF LFD +GD I+ EEL V+R + + + + + MI VDADG+G I+ DEF++
Sbjct: 11 DFKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIEFDEFLS 70
Query: 169 MMTRNV 174
+M + V
Sbjct: 71 LMAKKV 76
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 36/68 (52%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
S + + ++ F FD + DG I+ +E + + L + ++ E+ +D D +G I+
Sbjct: 5 SEEQIVDFKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIE 64
Query: 90 FKEFIEMM 97
F EF+ +M
Sbjct: 65 FDEFLSLM 72
>pdb|1FW4|A Chain A, Crystal Structure Of E. Coli Fragment Tr2c From Calmodulin
To 1.7 A Resolution
pdb|2LQP|A Chain A, Nmr Solution Structure Of The Ca2+-Calmodulin C-Terminal
Domain In A Complex With A Peptide (Nscate) From The
L-Type Voltage-Gated Calcium Channel Alpha1c Subunit
Length = 71
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 44/65 (67%)
Query: 107 KNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEF 166
+ +I+ AF++FD +G+ ISA EL V+ +GEK + + +MIR D DGDG ++ +EF
Sbjct: 5 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 64
Query: 167 MTMMT 171
+ MMT
Sbjct: 65 VQMMT 69
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
+E+R+ F FD + +G IS E ++ LG+ ++ E+ + R D D DG ++++EF+
Sbjct: 6 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 65
Query: 95 EMM 97
+MM
Sbjct: 66 QMM 68
>pdb|1F71|A Chain A, Refined Solution Structure Of Calmodulin C-Terminal Domain
pdb|1J7P|A Chain A, Solution Structure Of Calcium Calmodulin C-Terminal Domain
pdb|2K3S|B Chain B, Haddock-Derived Structure Of The Ch-Domain Of The
Smoothelin-Like 1 Complexed With The C-Domain Of
Apocalmodulin
pdb|2KUH|A Chain A, Halothane Binds To Druggable Sites In Calcium-Calmodulin:
Solution Structure Of Halothane-Cam C-Terminal Domain
pdb|2LLQ|A Chain A, Solution Nmr-Derived Structure Of Calmodulin C-Lobe Bound
With Er Alpha Peptide
Length = 67
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 44/65 (67%)
Query: 107 KNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEF 166
+ +I+ AF++FD +G+ ISA EL V+ +GEK + + +MIR D DGDG ++ +EF
Sbjct: 1 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 60
Query: 167 MTMMT 171
+ MMT
Sbjct: 61 VQMMT 65
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
+E+R+ F FD + +G IS E ++ LG+ ++ E+ + R D D DG ++++EF+
Sbjct: 2 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 61
Query: 95 EMM 97
+MM
Sbjct: 62 QMM 64
>pdb|1ZOT|B Chain B, Crystal Structure Analysis Of The CyaaC-Cam With Pmeapp
Length = 69
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 44/65 (67%)
Query: 107 KNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEF 166
+ +I+ AF++FD +G+ ISA EL V+ +GEK + + +MIR D DGDG ++ +EF
Sbjct: 4 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 63
Query: 167 MTMMT 171
+ MMT
Sbjct: 64 VQMMT 68
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
+E+R+ F FD + +G IS E ++ LG+ ++ E+ + R D D DG ++++EF+
Sbjct: 5 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 64
Query: 95 EMM 97
+MM
Sbjct: 65 QMM 67
>pdb|3O4Y|A Chain A, Crystal Structure Of Cad Domain Of The Plasmodium Vivax
Cdpk, Pvx_11610
Length = 196
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 23/156 (14%)
Query: 29 ASRSN---VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRF------ 79
A +SN VQ+++ F D G I++ + L KG+ ++ + F
Sbjct: 46 AQQSNDYDVQKLKAAFLHLDEEGKGNITKLQ-------LRKGLERSGLMLPPNFDLLLDQ 98
Query: 80 IDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVL----- 134
ID+D G ID+ EF+ D ++ K I AF++FD++ D +I+ EL VL
Sbjct: 99 IDSDGSGNIDYTEFLAAAIDR--RQLSKKLIYCAFRVFDVDNDGEITTAELAHVLFNGNK 156
Query: 135 RKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
R + ++ +KMIR VD +GDG ID EF MM
Sbjct: 157 RGNITERDVNQVKKMIREVDKNGDGKIDFYEFSEMM 192
>pdb|1YRU|B Chain B, Crystal Structure Analysis Of The Adenylyl Cyclaes
Catalytic Domain Of Adenylyl Cyclase Toxin Of Bordetella
Pertussis In Presence Of C-Terminal Calmodulin And 1mm
Calcium Chloride
pdb|1YRT|B Chain B, Crystal Structure Analysis Of The Adenylyl Cyclaes
Catalytic Domain Of Adenylyl Cyclase Toxin Of Bordetella
Pertussis In Presence Of C-Terminal Calmodulin
Length = 74
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 44/65 (67%)
Query: 107 KNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEF 166
+ +I+ AF++FD +G+ ISA EL V+ +GEK + + +MIR D DGDG ++ +EF
Sbjct: 8 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 67
Query: 167 MTMMT 171
+ MMT
Sbjct: 68 VQMMT 72
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
+E+R+ F FD + +G IS E ++ LG+ ++ E+ + R D D DG ++++EF+
Sbjct: 9 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 68
Query: 95 EMM 97
+MM
Sbjct: 69 QMM 71
>pdb|2BL0|B Chain B, Physarum Polycephalum Myosin Ii Regulatory Domain
Length = 145
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 17/155 (10%)
Query: 29 ASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYI 88
AS +QE Q+FDK + DGK+S +E SAL LGK + AE+ +T K G +
Sbjct: 2 ASADQIQECFQIFDK---DNDGKVSIEELGSALRSLGKNPTNAEL-------NTIK-GQL 50
Query: 89 DFKEF-IEMMHDMGDNRVKKNDIQG-----AFQLFDLNGDKKISAEELMEVLRKMGEKYS 142
+ KEF + + +K Q AF+ D G+ I EL ++L +G+ +
Sbjct: 51 NAKEFDLATFKTVYRKPIKTPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALT 110
Query: 143 LDSCRKMIRGVDADGDGLIDMDEFMTMMTRNVKVA 177
++++ V GDG I+ + F+ M+ +A
Sbjct: 111 SSEVEELMKEVSVSGDGAINYESFVDMLVTGYPLA 145
>pdb|1CMF|A Chain A, Nmr Solution Structure Of Apo Calmodulin Carboxy-Terminal
Domain
pdb|1CMG|A Chain A, Nmr Solution Structure Of Calcium-Loaded Calmodulin
Carboxy- Terminal Domain
Length = 73
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 44/65 (67%)
Query: 107 KNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEF 166
+ +I+ AF++FD +G+ ISA EL V+ +GEK + + +MIR D DGDG ++ +EF
Sbjct: 7 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 66
Query: 167 MTMMT 171
+ MMT
Sbjct: 67 VQMMT 71
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
+E+R+ F FD + +G IS E ++ LG+ ++ E+ + R D D DG ++++EF+
Sbjct: 8 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 67
Query: 95 EMM 97
+MM
Sbjct: 68 QMM 70
>pdb|2CTN|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 30
Structures
Length = 89
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 106 KKNDIQGAFQLFDLNG-DKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMD 164
+KN+ + AF +F L D IS +EL +V+R +G+ + + ++MI VD DG G +D D
Sbjct: 16 QKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD 75
Query: 165 EFMTMMTRNVK 175
EF+ MM R++K
Sbjct: 76 EFLVMMVRSMK 86
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 25 SVPRASRSNVQEMRQVFDKFDTN-KDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTD 83
+V + + E + FD F +DG IS E + +LG+ + E+ + +D D
Sbjct: 8 AVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDED 67
Query: 84 KDGYIDFKEFIEMM 97
G +DF EF+ MM
Sbjct: 68 GSGTVDFDEFLVMM 81
>pdb|2KFX|T Chain T, Structure Of The N-Terminal Domain Of Human Cardiac
Troponin C Bound To Calcium Ion And To The Inhibitor W7
Length = 89
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 106 KKNDIQGAFQLFDLNG-DKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMD 164
+KN+ + AF +F L D IS +EL +V+R +G+ + + ++MI VD DG G +D D
Sbjct: 16 QKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD 75
Query: 165 EFMTMMTRNVK 175
EF+ MM R++K
Sbjct: 76 EFLVMMVRSMK 86
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 25 SVPRASRSNVQEMRQVFDKFDTN-KDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTD 83
+V + + E + FD F +DG IS E + +LG+ + E+ + +D D
Sbjct: 8 AVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDED 67
Query: 84 KDGYIDFKEFIEMM 97
G +DF EF+ MM
Sbjct: 68 GSGTVDFDEFLVMM 81
>pdb|2I08|A Chain A, Solvation Effect In Conformational Changes Of Ef-Hand
Proteins: X-Ray Structure Of Ca2+-Saturated Double
Mutant Q41l-K75i Of N-Domain Of Calmodulin
Length = 78
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF L+D +GD I+ +EL V+R +G + + MI VDADG+G ID EF+TMM R
Sbjct: 15 AFSLYDKDGDGTITTKELGTVMRSLGLNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR 74
Query: 173 NVK 175
+K
Sbjct: 75 IMK 77
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 28 RASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGY 87
+ + + E ++ F +D + DG I+ E + + LG ++AE+ +D D +G
Sbjct: 3 QLTEEQIAEFKEAFSLYDKDGDGTITTKELGTVMRSLGLNPTEAELQDMINEVDADGNGT 62
Query: 88 IDFKEFIEMM 97
IDF EF+ MM
Sbjct: 63 IDFPEFLTMM 72
>pdb|2RO8|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 1 N-Terminal Domain
Length = 79
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD +GD I+ +EL V+R +G+ + + MI VDADG+G ID EF+ +M R
Sbjct: 15 AFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAR 74
Query: 173 NVK 175
+K
Sbjct: 75 KMK 77
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
+ E ++ F FD + DG I+ E + + LG+ ++AE+ +D D +G IDF EF
Sbjct: 9 ISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEF 68
Query: 94 IEMM 97
+ +M
Sbjct: 69 LNLM 72
>pdb|1WRK|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human
Cardiac Troponin C In Complex With Trifluoperazine
(Orthrombic Crystal Form)
pdb|1WRK|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human
Cardiac Troponin C In Complex With Trifluoperazine
(Orthrombic Crystal Form)
pdb|1WRL|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human
Cardiac Troponin C In Complex With Trifluoperazine
(Monoclinic Crystal Form)
pdb|1WRL|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human
Cardiac Troponin C In Complex With Trifluoperazine
(Monoclinic Crystal Form)
pdb|1WRL|C Chain C, Crystal Structure Of The N-Terminal Domain Of Human
Cardiac Troponin C In Complex With Trifluoperazine
(Monoclinic Crystal Form)
pdb|1WRL|D Chain D, Crystal Structure Of The N-Terminal Domain Of Human
Cardiac Troponin C In Complex With Trifluoperazine
(Monoclinic Crystal Form)
pdb|1WRL|E Chain E, Crystal Structure Of The N-Terminal Domain Of Human
Cardiac Troponin C In Complex With Trifluoperazine
(Monoclinic Crystal Form)
pdb|1WRL|F Chain F, Crystal Structure Of The N-Terminal Domain Of Human
Cardiac Troponin C In Complex With Trifluoperazine
(Monoclinic Crystal Form)
Length = 88
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 106 KKNDIQGAFQLFDLNG-DKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMD 164
+KN+ + AF +F L D IS +EL +V+R +G+ + + ++MI VD DG G +D D
Sbjct: 16 QKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD 75
Query: 165 EFMTMMTRNVK 175
EF+ MM R++K
Sbjct: 76 EFLVMMVRSMK 86
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 25 SVPRASRSNVQEMRQVFDKFDTN-KDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTD 83
+V + + E + FD F +DG IS E + +LG+ + E+ + +D D
Sbjct: 8 AVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDED 67
Query: 84 KDGYIDFKEFIEMM 97
G +DF EF+ MM
Sbjct: 68 GSGTVDFDEFLVMM 81
>pdb|2LVI|A Chain A, Solution Structure Of Apo-phl P 7
pdb|2LVJ|A Chain A, Solution Structure Of Hemi-mg-bound Phl P 7
pdb|2LVK|A Chain A, Solution Structure Of Ca-bound Phl P 7
Length = 77
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 36 EMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIE 95
+M ++F +FDTN DGKIS E AL LG S E+ + IDTD DG+IDF EFI
Sbjct: 3 DMERIFKRFDTNGDGKISLSELTDALRTLGS-TSADEVQRMMAEIDTDGDGFIDFNEFIS 61
Query: 96 MMH 98
+
Sbjct: 62 FCN 64
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 108 NDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFM 167
+D++ F+ FD NGD KIS EL + LR +G S D ++M+ +D DGDG ID +EF+
Sbjct: 2 DDMERIFKRFDTNGDGKISLSELTDALRTLGST-SADEVQRMMAEIDTDGDGFIDFNEFI 60
Query: 168 TMMTRN 173
+ N
Sbjct: 61 SFCNAN 66
>pdb|1K9U|A Chain A, Crystal Structure Of The Calcium-Binding Pollen Allergen
Phl P 7 (Polcalcin) At 1.75 Angstroem
pdb|1K9U|B Chain B, Crystal Structure Of The Calcium-Binding Pollen Allergen
Phl P 7 (Polcalcin) At 1.75 Angstroem
Length = 78
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 36 EMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIE 95
+M ++F +FDTN DGKIS E AL LG S E+ + IDTD DG+IDF EFI
Sbjct: 4 DMERIFKRFDTNGDGKISLSELTDALRTLGS-TSADEVQRMMAEIDTDGDGFIDFNEFIS 62
Query: 96 MMH 98
+
Sbjct: 63 FCN 65
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 108 NDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFM 167
+D++ F+ FD NGD KIS EL + LR +G S D ++M+ +D DGDG ID +EF+
Sbjct: 3 DDMERIFKRFDTNGDGKISLSELTDALRTLGST-SADEVQRMMAEIDTDGDGFIDFNEFI 61
Query: 168 TMMTRN 173
+ N
Sbjct: 62 SFCNAN 67
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 77/153 (50%), Gaps = 25/153 (16%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLG---------KGISKAEMAKSFRFIDTDKD 85
+E+ +F K D N DG++ + E +VL K + + E+ + +D DK+
Sbjct: 355 KELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEE-EVDNILKEVDFDKN 413
Query: 86 GYIDFKEFIEMMHD----MGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEV--LRKMGE 139
GYI++ EFI + D + R+++ AF LFD + KI+ EEL + L + E
Sbjct: 414 GYIEYSEFISVCMDKQILFSEERLRR-----AFNLFDTDKSGKITKEELANLFGLTSISE 468
Query: 140 KYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
K + ++ D + D +ID DEF++MM +
Sbjct: 469 K----TWNDVLGEADQNKDNMIDFDEFVSMMHK 497
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
+ +R+ F+ FDT+K GKI+++E + + IS+ D +KD IDF EF+
Sbjct: 435 ERLRRAFNLFDTDKSGKITKEELANLFGL--TSISEKTWNDVLGEADQNKDNMIDFDEFV 492
Query: 95 EMMHDMGDNRV 105
MMH + D++
Sbjct: 493 SMMHKICDHKT 503
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 14/155 (9%)
Query: 29 ASRSNVQEMRQVFDKFDTNKDGKISQDE----YNSALSVLGKGIS-------KAEMAKSF 77
S+ +E+ +F K D N DG++ + E Y + + G+ S + E+ +
Sbjct: 352 TSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVL 411
Query: 78 RFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM 137
+D DK+GYI++ EF+ + D + + ++ AF++FD + KIS+ EL +
Sbjct: 412 DAVDFDKNGYIEYSEFVTVAMDR-KTLLSRERLERAFRMFDSDNSGKISSTELATIFGV- 469
Query: 138 GEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
++ + ++ VD + DG +D DEF M+ +
Sbjct: 470 -SDVDSETWKSVLSEVDKNNDGEVDFDEFQQMLLK 503
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 14/155 (9%)
Query: 29 ASRSNVQEMRQVFDKFDTNKDGKISQDE----YNSALSVLGKGIS-------KAEMAKSF 77
S+ +E+ +F K D N DG++ + E Y + + G+ S + E+ +
Sbjct: 353 TSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVL 412
Query: 78 RFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM 137
+D DK+GYI++ EF+ + D + + ++ AF++FD + KIS+ EL +
Sbjct: 413 DAVDFDKNGYIEYSEFVTVAMDR-KTLLSRERLERAFRMFDSDNSGKISSTELATIFGV- 470
Query: 138 GEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
++ + ++ VD + DG +D DEF M+ +
Sbjct: 471 -SDVDSETWKSVLSEVDKNNDGEVDFDEFQQMLLK 504
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 14/155 (9%)
Query: 29 ASRSNVQEMRQVFDKFDTNKDGKISQDE----YNSALSVLGKGIS-------KAEMAKSF 77
S+ +E+ +F K D N DG++ + E Y + + G+ S + E+ +
Sbjct: 329 TSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVL 388
Query: 78 RFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM 137
+D DK+GYI++ EF+ + D + + ++ AF++FD + KIS+ EL +
Sbjct: 389 DAVDFDKNGYIEYSEFVTVAMDR-KTLLSRERLERAFRMFDSDNSGKISSTELATIFGV- 446
Query: 138 GEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
++ + ++ VD + DG +D DEF M+ +
Sbjct: 447 -SDVDSETWKSVLSEVDKNNDGEVDFDEFQQMLLK 480
>pdb|2KXW|A Chain A, Structure Of The C-Domain Fragment Of Apo Calmodulin Bound
To The Iq Motif Of Nav1.2
Length = 73
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMT 171
AF++FD +G+ ISA EL V+ +GEK + D +MIR D DGDG I+ +EF+ MM
Sbjct: 13 AFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMMV 71
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
+E+ + F FD + +G IS E ++ LG+ ++ E+ + R D D DG+I+++EF+
Sbjct: 8 EELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFV 67
Query: 95 EMM 97
MM
Sbjct: 68 RMM 70
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 77/158 (48%), Gaps = 19/158 (12%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDE----YNSALSVLGKGISKAEMAKS------------F 77
+++ ++F K DTN DG + +DE Y+ + + KG+ + ++
Sbjct: 330 TKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRL--KGVDSNSLIQNEGSTIEDQIDSLM 387
Query: 78 RFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM 137
+D D G I++ EFI D + + ++ AF++FD +G KIS +EL ++ +
Sbjct: 388 PLLDMDGSGSIEYSEFIASAIDRT-ILLSRERMERAFKMFDKDGSGKISTKELFKLFSQA 446
Query: 138 GEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRNVK 175
++ +I VD + DG +D +EF+ M+ V+
Sbjct: 447 DSSIQMEELESIIEQVDNNKDGEVDFNEFVEMLQNFVR 484
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%)
Query: 25 SVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDK 84
++ R + + M + F FD + GKIS E S I E+ +D +K
Sbjct: 407 AIDRTILLSRERMERAFKMFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNK 466
Query: 85 DGYIDFKEFIEMMHDMGDN 103
DG +DF EF+EM+ + N
Sbjct: 467 DGEVDFNEFVEMLQNFVRN 485
>pdb|2COL|B Chain B, Crystal Structure Analysis Of CyaaC-Cam With Pyrophosphate
Length = 67
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 107 KNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEF 166
+ +I+ AF++FD +G+ ISA EL V+ +GEK + + +MIR D DGDG ++ +EF
Sbjct: 4 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 63
Query: 167 MTMM 170
+ MM
Sbjct: 64 VQMM 67
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
+E+R+ F FD + +G IS E ++ LG+ ++ E+ + R D D DG ++++EF+
Sbjct: 5 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 64
Query: 95 EMM 97
+MM
Sbjct: 65 QMM 67
>pdb|2JNX|A Chain A, Nmr Derived Solution Structure Of An Ef-Hand Calcium
Binding Protein From Entamoeba Histolytica
Length = 134
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 12/135 (8%)
Query: 40 VFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMM-- 97
+F + D N DG +S +E + +S ++ + F+ ID D +G ID EF +
Sbjct: 5 LFKQLDANGDGSVSYEEVKAFVSSKRPIKNEQLLQLIFKAIDIDGNGEIDLAEFTKFAAA 64
Query: 98 ---HDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVD 154
D+ D +V ++ ++L D +GD K++ EE+ +K G + +D K D
Sbjct: 65 VKEQDLSDEKV---GLKILYKLMDADGDGKLTKEEVTTFFKKFGYEKVVDQIMK----AD 117
Query: 155 ADGDGLIDMDEFMTM 169
A+GDG I ++EF+
Sbjct: 118 ANGDGYITLEEFLAF 132
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 111 QGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEF 166
+ F+ D NGD +S EE+ + + + + + +D DG+G ID+ EF
Sbjct: 3 EALFKQLDANGDGSVSYEEVKAFVSSKRPIKNEQLLQLIFKAIDIDGNGEIDLAEF 58
>pdb|2K7C|A Chain A, Nmr Structure Of Mg2+-Bound Cabp1 C-Domain
pdb|2K7D|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 C-Domain
Length = 72
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 109 DIQGAFQLFDLNGDKKISAEELMEVLRKM-GEKYSLDSCRKMIRGVDADGDGLIDMDEFM 167
+++ AF+ FD NGD +IS EL E +RK+ G + ++IR VD +GDG +D +EF+
Sbjct: 8 ELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFV 67
Query: 168 TMMTR 172
MM+R
Sbjct: 68 RMMSR 72
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 33 NVQEMRQVFDKFDTNKDGKISQDEYNSAL-SVLGKGISKAEMAKSFRFIDTDKDGYIDFK 91
V+E+R F +FDTN DG+IS E A+ +LG + ++ + R +D + DG +DF+
Sbjct: 5 GVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFE 64
Query: 92 EFIEMM 97
EF+ MM
Sbjct: 65 EFVRMM 70
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 68 ISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISA 127
I E+ +FR DT+ DG I E E M + ++V DI+ + DLNGD ++
Sbjct: 4 IGVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDF 63
Query: 128 EELMEVLRK 136
EE + ++ +
Sbjct: 64 EEFVRMMSR 72
>pdb|1MXL|C Chain C, Structure Of Cardiac Troponin C-troponin I Complex
pdb|1LXF|C Chain C, Structure Of The Regulatory N-Domain Of Human Cardiac
Troponin C In Complex With Human Cardiac Troponin-I(147-
163) And Bepridil
pdb|1AP4|A Chain A, Regulatory Domain Of Human Cardiac Troponin C In The
Calcium-Saturated State, Nmr, 40 Structures
pdb|1SPY|A Chain A, Regulatory Domain Of Human Cardiac Troponin C In The
Calcium-Free State, Nmr, 40 Structures
pdb|2KRD|C Chain C, Solution Structure Of The Regulatory Domain Of Human
Cardiac C In Complex With The Switch Region Of Cardiac
Troponin I A
pdb|2L1R|A Chain A, The Structure Of The Calcium-Sensitizer, Dfbp-O, In
Complex With The N-Domain Of Troponin C And The Switch
Region Of Troponin I
pdb|3SD6|A Chain A, Crystal Structure Of The Amino-terminal Domain Of Human
Cardiac Troponin C In Complex With Cadmium At 1.4
Resolution.
pdb|3SWB|A Chain A, Crystal Structure Of The Amino-terminal Domain Of Human
Cardiac Troponin C In Complex With Cadmium At 1.7 A
Resolution
pdb|4GJE|A Chain A, Crystal Structure Of The Refolded Amino-terminal Domain Of
Human Cardiac Troponin C In Complex With Cadmium
Length = 89
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 106 KKNDIQGAFQLFDLNG-DKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMD 164
+KN+ + AF +F L D IS +EL +V+R +G+ + + ++MI VD DG G +D D
Sbjct: 16 QKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD 75
Query: 165 EFMTMMTRNVK 175
EF+ MM R +K
Sbjct: 76 EFLVMMVRCMK 86
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 25 SVPRASRSNVQEMRQVFDKFDTN-KDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTD 83
+V + + E + FD F +DG IS E + +LG+ + E+ + +D D
Sbjct: 8 AVEQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDED 67
Query: 84 KDGYIDFKEFIEMM 97
G +DF EF+ MM
Sbjct: 68 GSGTVDFDEFLVMM 81
>pdb|2R2I|A Chain A, Myristoylated Guanylate Cyclase Activating Protein-1 With
Calcium Bound
Length = 198
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
Query: 16 SMPKERQNPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAK 75
++ + +Q + S S + + Q+F+ FD NKDG I EY +ALS++ KG ++
Sbjct: 33 TLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDFMEYVAALSLVLKGKVDQKLRW 92
Query: 76 SFRFIDTDKDGYIDFKEFIEMMHDM-GDNRVKKNDIQGA-------FQLFDLNGDKKISA 127
F+ D D +G ID E + ++ + NR N+ A F D+NGD ++S
Sbjct: 93 YFKLYDVDGNGCIDRGELLNIIKAIRAINRC--NEAMTAEEFTNMVFDKIDINGDGELSL 150
Query: 128 EELMEVLRK 136
EE ME ++K
Sbjct: 151 EEFMEGVQK 159
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 74/146 (50%), Gaps = 20/146 (13%)
Query: 36 EMRQVFDKFDTN-KDGKISQDEYNSALSVLGKGISKAE---MAKSFRFIDTDKDGYIDFK 91
E Q + KF T G+++ E+ + K +S + + + F D +KDGYIDF
Sbjct: 15 ECHQWYKKFMTECPSGQLTLYEFKQFFGL--KNLSPSANKYVEQMFETFDFNKDGYIDFM 72
Query: 92 EFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIR 151
E++ + + +V + ++ F+L+D++G+ I EL+ +++ + +++ C + +
Sbjct: 73 EYVAALSLVLKGKVDQK-LRWYFKLYDVDGNGCIDRGELLNIIKAIR---AINRCNEAMT 128
Query: 152 G----------VDADGDGLIDMDEFM 167
+D +GDG + ++EFM
Sbjct: 129 AEEFTNMVFDKIDINGDGELSLEEFM 154
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 110 IQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTM 169
++ F+ FD N D I E + L + + R + D DG+G ID E + +
Sbjct: 54 VEQMFETFDFNKDGYIDFMEYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNI 113
Query: 170 M 170
+
Sbjct: 114 I 114
>pdb|2RRT|A Chain A, Solution Structure Of Magnesium-Bound Form Of Calmodulin
C-Domain E104dE140D MUTANT
Length = 72
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 44/65 (67%)
Query: 107 KNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEF 166
+ +I+ AF++FD +G+ ISA +L V+ +GEK + + +MIR D DGDG ++ ++F
Sbjct: 6 EEEIREAFRVFDKDGNGYISAADLRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEDF 65
Query: 167 MTMMT 171
+ MMT
Sbjct: 66 VQMMT 70
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 39/63 (61%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
+E+R+ F FD + +G IS + ++ LG+ ++ E+ + R D D DG +++++F+
Sbjct: 7 EEIREAFRVFDKDGNGYISAADLRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEDFV 66
Query: 95 EMM 97
+MM
Sbjct: 67 QMM 69
>pdb|1MF8|B Chain B, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
Length = 170
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 9/142 (6%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
++ + + F K D + G +S +E+ S L + + + DTD +G +DFKEF
Sbjct: 20 IKRLGKRFKKLDLDNSGSLSVEEFMS----LPELQQNPLVQRVIDIFDTDGNGEVDFKEF 75
Query: 94 IEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDS-----CRK 148
IE + K+ ++ AF+++D++ D IS EL +VL+ M D+ K
Sbjct: 76 IEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDK 135
Query: 149 MIRGVDADGDGLIDMDEFMTMM 170
I D DGDG I +EF ++
Sbjct: 136 TIINADKDGDGRISFEEFCAVV 157
>pdb|2KZ2|A Chain A, Calmodulin, C-Terminal Domain, F92e Mutant
Length = 94
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%)
Query: 107 KNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEF 166
+ +I+ AF++ D +G+ ISA EL V+ +GEK + + +MIR D DGDG ++ +EF
Sbjct: 28 EEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 87
Query: 167 MTMMT 171
+ MMT
Sbjct: 88 VQMMT 92
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
+E+R+ F D + +G IS E ++ LG+ ++ E+ + R D D DG ++++EF+
Sbjct: 29 EEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 88
Query: 95 EMM 97
+MM
Sbjct: 89 QMM 91
>pdb|1TCO|B Chain B, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
pdb|1AUI|B Chain B, Human Calcineurin Heterodimer
pdb|1M63|B Chain B, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|F Chain F, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
Length = 169
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 9/142 (6%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
++ + + F K D + G +S +E+ S L + + + DTD +G +DFKEF
Sbjct: 19 IKRLGKRFKKLDLDNSGSLSVEEFMS----LPELQQNPLVQRVIDIFDTDGNGEVDFKEF 74
Query: 94 IEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDS-----CRK 148
IE + K+ ++ AF+++D++ D IS EL +VL+ M D+ K
Sbjct: 75 IEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDK 134
Query: 149 MIRGVDADGDGLIDMDEFMTMM 170
I D DGDG I +EF ++
Sbjct: 135 TIINADKDGDGRISFEEFCAVV 156
>pdb|3J04|C Chain C, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|F Chain F, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 148
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 15/150 (10%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGY-- 87
S E ++ F FD DGKI + + LG+ + AE+ K +D+
Sbjct: 2 SEEQTAEFKEAFQLFDRTGDGKILYSQCGDVMRALGQNPTNAEVMKVLGNPKSDEMNLKT 61
Query: 88 IDFKEFIEMMHDMGDNRVKKNDIQGAFQ-------LFDLNGDKKISAEELMEVLRKMGEK 140
+ F++F+ MM + KN QG F+ +FD G+ + E+ VL +GEK
Sbjct: 62 LKFEQFLPMMQ-----TIAKNKDQGCFEDYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEK 116
Query: 141 YSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
+ + +++ G + D +G I+ +E + M+
Sbjct: 117 MTEEEVEQLVAGHE-DSNGCINYEELVRMV 145
>pdb|2JXL|A Chain A, Solution Structure Of Cardiac N-Domain Troponin C Mutant
F77w-V82a
Length = 89
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 106 KKNDIQGAFQLFDLNG-DKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMD 164
+KN+ + AF +F L D IS +EL +V+R +G+ + + ++MI VD DG G +D D
Sbjct: 16 QKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD 75
Query: 165 EFMTMMTRNVK 175
E++ MM R +K
Sbjct: 76 EWLVMMARCMK 86
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 25 SVPRASRSNVQEMRQVFDKFDTN-KDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTD 83
+V + + E + FD F +DG IS E + +LG+ + E+ + +D D
Sbjct: 8 AVEQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDED 67
Query: 84 KDGYIDFKEFIEMM 97
G +DF E++ MM
Sbjct: 68 GSGTVDFDEWLVMM 81
>pdb|1BR1|B Chain B, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|D Chain D, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|F Chain F, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|H Chain H, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|B Chain B, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|D Chain D, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|F Chain F, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|H Chain H, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1I84|T Chain T, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|W Chain W, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|3DTP|C Chain C, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
pdb|3DTP|D Chain D, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 150
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 15/150 (10%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGY-- 87
S E ++ F FD DGKI + + LG+ + AE+ K +D+
Sbjct: 4 SEEQTAEFKEAFQLFDRTGDGKILYSQCGDVMRALGQNPTNAEVMKVLGNPKSDEMNLKT 63
Query: 88 IDFKEFIEMMHDMGDNRVKKNDIQGAFQ-------LFDLNGDKKISAEELMEVLRKMGEK 140
+ F++F+ MM + KN QG F+ +FD G+ + E+ VL +GEK
Sbjct: 64 LKFEQFLPMMQ-----TIAKNKDQGCFEDYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEK 118
Query: 141 YSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
+ + +++ G + D +G I+ +E + M+
Sbjct: 119 MTEEEVEQLVAGHE-DSNGCINYEELVRMV 147
>pdb|2KGB|C Chain C, Nmr Solution Of The Regulatory Domain Cardiac
F77w-Troponin C In Complex With The Cardiac Troponin I
144-163 Switch Peptide
Length = 89
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 106 KKNDIQGAFQLFDLNG-DKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMD 164
+KN+ + AF +F L D IS +EL +V+R +G+ + + ++MI VD DG G +D D
Sbjct: 16 QKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD 75
Query: 165 EFMTMMTRNVK 175
E++ MM R +K
Sbjct: 76 EWLVMMVRCMK 86
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 25 SVPRASRSNVQEMRQVFDKFDTN-KDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTD 83
+V + + E + FD F +DG IS E + +LG+ + E+ + +D D
Sbjct: 8 AVEQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDED 67
Query: 84 KDGYIDFKEFIEMM 97
G +DF E++ MM
Sbjct: 68 GSGTVDFDEWLVMM 81
>pdb|1AVS|A Chain A, X-Ray Crystallographic Study Of Calcium-Saturated N-
Terminal Domain Of Troponin C
pdb|1AVS|B Chain B, X-Ray Crystallographic Study Of Calcium-Saturated N-
Terminal Domain Of Troponin C
pdb|1BLQ|A Chain A, Structure And Interaction Site Of The Regulatory Domain Of
Troponin-C When Complexed With The 96-148 Region Of
Troponin-I, Nmr, 29 Structures
pdb|1SKT|A Chain A, Solution Structure Of Apo N-Domain Of Troponin C, Nmr, 40
Structures
pdb|1TNP|A Chain A, Structures Of The Apo And Calcium Troponin-C Regulatory
Domains: The Muscle Contraction Switch
pdb|1TNQ|A Chain A, Structures Of The Apo And Calcium Troponin-C Regulatory
Domains: The Muscle Contraction Switch
pdb|1ZAC|A Chain A, N-Domain Of Troponin C From Chicken Skeletal Muscle, Nmr,
Minimized Average Structure
Length = 90
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 109 DIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMT 168
+ + AF +FD +G IS +EL V+R +G+ + + +I VD DG G ID +EF+
Sbjct: 21 EFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLV 80
Query: 169 MMTRNVK 175
MM R +K
Sbjct: 81 MMVRQMK 87
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
S + E + FD FD + G IS E + + +LG+ +K E+ +D D G ID
Sbjct: 15 SEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTID 74
Query: 90 FKEFIEMM 97
F+EF+ MM
Sbjct: 75 FEEFLVMM 82
>pdb|3LL8|B Chain B, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
pdb|3LL8|D Chain D, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
Length = 155
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 9/142 (6%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
++ + + F K D + G +S +E+ S L + + + DTD +G +DFKEF
Sbjct: 5 IKRLGKRFKKLDLDNSGSLSVEEFMS----LPELQQNPLVQRVIDIFDTDGNGEVDFKEF 60
Query: 94 IEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDS-----CRK 148
IE + K+ ++ AF+++D++ D IS EL +VL+ M D+ K
Sbjct: 61 IEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDK 120
Query: 149 MIRGVDADGDGLIDMDEFMTMM 170
I D DGDG I +EF ++
Sbjct: 121 TIINADKDGDGRISFEEFCAVV 142
>pdb|2P6B|B Chain B, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
pdb|2P6B|D Chain D, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
Length = 156
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 9/142 (6%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
++ + + F K D + G +S +E+ S L + + + DTD +G +DFKEF
Sbjct: 6 IKRLGKRFKKLDLDNSGSLSVEEFMS----LPELQQNPLVQRVIDIFDTDGNGEVDFKEF 61
Query: 94 IEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDS-----CRK 148
IE + K+ ++ AF+++D++ D IS EL +VL+ M D+ K
Sbjct: 62 IEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDK 121
Query: 149 MIRGVDADGDGLIDMDEFMTMM 170
I D DGDG I +EF ++
Sbjct: 122 TIINADKDGDGRISFEEFCAVV 143
>pdb|1G8I|A Chain A, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|1G8I|B Chain B, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|2LCP|A Chain A, Nmr Structure Of Calcium Loaded, Un-Myristoylated Human
Ncs-1
Length = 190
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 11/104 (10%)
Query: 40 VFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEM--- 96
VF+ FD NKDG+I E+ ALSV +G ++ +F+ D D DGYI E +++
Sbjct: 68 VFNVFDENKDGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDA 127
Query: 97 MHDMGDNRVK--------KNDIQGAFQLFDLNGDKKISAEELME 132
++ M N V+ + + F + D N D K++ +E E
Sbjct: 128 IYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQE 171
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 77 FRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVL 134
F D +KDG I+F EFI+ + + + ++ AF+L+DL+ D I+ E+++++
Sbjct: 69 FNVFDENKDGRIEFSEFIQALSVTSRGTLDEK-LRWAFKLYDLDNDGYITRNEMLDIV 125
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 25/58 (43%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
F +FD N D +I E ++ L + R + D D DG I +E + ++
Sbjct: 68 VFNVFDENKDGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIV 125
>pdb|1R2U|A Chain A, Nmr Structure Of The N Domain Of Trout Cardiac Troponin C
At 30 C
pdb|1R6P|A Chain A, Nmr Structure Of The N-Terminal Domain Of Trout Cardiac
Troponin C At 7 C
Length = 89
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 106 KKNDIQGAFQLFDLNG-DKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMD 164
+KN+ + AF +F + D IS +EL +V+R +G+ + + ++MI VD DG G +D D
Sbjct: 16 QKNEFKAAFDIFIQDAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD 75
Query: 165 EFMTMMTRNVK 175
EF+ MM R +K
Sbjct: 76 EFLVMMVRCMK 86
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 25 SVPRASRSNVQEMRQVFDKFDTN-KDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTD 83
+V + + E + FD F + +DG IS E + +LG+ + E+ + +D D
Sbjct: 8 AVEQLTDEQKNEFKAAFDIFIQDAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDED 67
Query: 84 KDGYIDFKEFIEMM 97
G +DF EF+ MM
Sbjct: 68 GSGTVDFDEFLVMM 81
>pdb|4GJG|A Chain A, Crystal Structure Of The Amino-terminal Domain Of Human
Cardiac Troponin C Mutant D2n/v28i/l29q/g30d (niqd) In
Complex With Cadmium
Length = 89
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 106 KKNDIQGAFQLFDLNG-DKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMD 164
+KN+ + AF +F + D IS +EL +V+R +G+ + + ++MI VD DG G +D D
Sbjct: 16 QKNEFKAAFDIFIQDAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD 75
Query: 165 EFMTMMTRNVK 175
EF+ MM R +K
Sbjct: 76 EFLVMMVRCMK 86
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 25 SVPRASRSNVQEMRQVFDKFDTN-KDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTD 83
+V + + E + FD F + +DG IS E + +LG+ + E+ + +D D
Sbjct: 8 AVEQLTEEQKNEFKAAFDIFIQDAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDED 67
Query: 84 KDGYIDFKEFIEMM 97
G +DF EF+ MM
Sbjct: 68 GSGTVDFDEFLVMM 81
>pdb|1TRF|A Chain A, Solution Structure Of The Tr1c Fragment Of Skeletal Muscle
Troponin-C
Length = 76
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 109 DIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMT 168
+ + AF +FD +G IS +EL V+R +G+ + + +I VD DG G ID +EF+
Sbjct: 10 EFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLV 69
Query: 169 MMTRNVK 175
MM R +K
Sbjct: 70 MMVRQMK 76
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
S + E + FD FD + G IS E + + +LG+ +K E+ +D D G ID
Sbjct: 4 SEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTID 63
Query: 90 FKEFIEMM 97
F+EF+ MM
Sbjct: 64 FEEFLVMM 71
>pdb|1GGW|A Chain A, Cdc4p From Schizosaccharomyces Pombe
Length = 140
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 17/143 (11%)
Query: 38 RQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMM 97
+Q F FD + G+I + L G+ + AE+ + I++ +D ++F++++
Sbjct: 8 KQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITE----IESTLPAEVDMEQFLQVL 63
Query: 98 HDMGDNRVKKNDIQG-------AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMI 150
NR D+ G FQ+FD + I EL VL +GEK S + +++
Sbjct: 64 -----NRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELL 118
Query: 151 RGVDADGDGLIDMDEFMTMMTRN 173
+GV DG+++ +F+ M+ N
Sbjct: 119 KGVPVK-DGMVNYHDFVQMILAN 140
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
+E + F FD + G I E L+ LG+ +S EM + + + KDG +++ +F+
Sbjct: 76 EEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPV-KDGMVNYHDFV 134
Query: 95 EMM 97
+M+
Sbjct: 135 QMI 137
>pdb|4GJF|A Chain A, Crystal Structure Of The Amino-terminal Domain Of Human
Cardiac Troponin C Mutant L29q In Complex With Cadmium
Length = 89
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 106 KKNDIQGAFQLFDLNG--DKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDM 163
+KN+ + AF +F + G D IS +EL +V+R +G+ + + ++MI VD DG G +D
Sbjct: 16 QKNEFKAAFDIF-VQGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDF 74
Query: 164 DEFMTMMTRNVK 175
DEF+ MM R +K
Sbjct: 75 DEFLVMMVRCMK 86
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 25 SVPRASRSNVQEMRQVFDKF-DTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTD 83
+V + + E + FD F +DG IS E + +LG+ + E+ + +D D
Sbjct: 8 AVEQLTEEQKNEFKAAFDIFVQGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDED 67
Query: 84 KDGYIDFKEFIEMM 97
G +DF EF+ MM
Sbjct: 68 GSGTVDFDEFLVMM 81
>pdb|1JFJ|A Chain A, Nmr Solution Structure Of An Ef-Hand Calcium Binding
Protein From Entamoeba Histolytica
pdb|1JFK|A Chain A, Minimum Energy Representative Structure Of A Calcium Bound
Ef-hand Protein From Entamoeba Histolytica
Length = 134
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 72/134 (53%), Gaps = 14/134 (10%)
Query: 40 VFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAK-SFRFIDTDKDGYIDFKEFIEMM- 97
+F + D N DG +S +E + +S + I ++ + F+ ID D +G ID EF +
Sbjct: 5 LFKEIDVNGDGAVSYEEVKAFVSK-KRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYG 63
Query: 98 ----HDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGV 153
D+ D+++ ++ ++L D++GD K++ EE+ +K G ++ + +
Sbjct: 64 SIQGQDLSDDKI---GLKVLYKLMDVDGDGKLTKEEVTSFFKKHG----IEKVAEQVMKA 116
Query: 154 DADGDGLIDMDEFM 167
DA+GDG I ++EF+
Sbjct: 117 DANGDGYITLEEFL 130
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 111 QGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEF 166
+ F+ D+NGD +S EE+ + K + + + + +DADG+G ID +EF
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEF 58
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 37 MRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEM 96
++ ++ D + DGK++++E S GI K +A+ D + DGYI +EF+E
Sbjct: 77 LKVLYKLMDVDGDGKLTKEEVTSFFK--KHGIEK--VAEQVMKADANGDGYITLEEFLEF 132
>pdb|2NXQ|A Chain A, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|2NXQ|B Chain B, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|3PX1|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3PX1|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3QJK|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3QJK|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3ULG|A Chain A, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
pdb|3ULG|B Chain B, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
Length = 134
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 72/134 (53%), Gaps = 14/134 (10%)
Query: 40 VFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAK-SFRFIDTDKDGYIDFKEFIEMM- 97
+F + D N DG +S +E + +S + I ++ + F+ ID D +G ID EF +
Sbjct: 5 LFKEIDVNGDGAVSYEEVKAFVSK-KRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYG 63
Query: 98 ----HDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGV 153
D+ D+++ ++ ++L D++GD K++ EE+ +K G ++ + +
Sbjct: 64 SIQGQDLSDDKI---GLKVLYKLMDVDGDGKLTKEEVTSFFKKHG----IEKVAEQVMKA 116
Query: 154 DADGDGLIDMDEFM 167
DA+GDG I ++EF+
Sbjct: 117 DANGDGYITLEEFL 130
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 111 QGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEF 166
+ F+ D+NGD +S EE+ + K + + + + +DADG+G ID +EF
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEF 58
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 37 MRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEM 96
++ ++ D + DGK++++E S GI K +A+ D + DGYI +EF+E
Sbjct: 77 LKVLYKLMDVDGDGKLTKEEVTSFFK--KHGIEK--VAEQVMKADANGDGYITLEEFLEF 132
>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2
pdb|3NYV|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Non-Specific Inhibitor
Whi-P180
Length = 484
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 14/155 (9%)
Query: 29 ASRSNVQEMRQVFDKFDTNKDGKISQDEYNSAL-----------SVLGKGISKAEMAKSF 77
S+ +E+ +F K D N DG++ + E S L + E+ +
Sbjct: 329 TSQDETKELTAIFHKXDKNGDGQLDRAELIEGYKELXRXKGQDASXLDASAVEHEVDQVL 388
Query: 78 RFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM 137
+D DK+GYI++ EF+ + D + + ++ AF+ FD + KIS+ EL +
Sbjct: 389 DAVDFDKNGYIEYSEFVTVAXDR-KTLLSRERLERAFRXFDSDNSGKISSTELATIFGV- 446
Query: 138 GEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
++ + ++ VD + DG +D DEF + +
Sbjct: 447 -SDVDSETWKSVLSEVDKNNDGEVDFDEFQQXLLK 480
>pdb|3J04|B Chain B, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|E Chain E, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 143
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 69/145 (47%), Gaps = 4/145 (2%)
Query: 31 RSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDF 90
+S +QE ++ F+ D N+DG I +++ + L+ +GK + + ++ G I+F
Sbjct: 3 QSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMM----SEAPGPINF 58
Query: 91 KEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMI 150
F+ M + + ++ I+ AF FD I + L E+L MG++++ + +M
Sbjct: 59 TMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMY 118
Query: 151 RGVDADGDGLIDMDEFMTMMTRNVK 175
R D G + EF ++ K
Sbjct: 119 REAPIDKKGNFNYVEFTRILKHGAK 143
>pdb|2OPO|A Chain A, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|B Chain B, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|C Chain C, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|D Chain D, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
Length = 86
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 33 NVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKE 92
++ + ++F +FDTN DGKIS E AL LG ++ E+ + IDTD DG+I F E
Sbjct: 9 DIADRERIFKRFDTNGDGKISSSELGDALKTLGS-VTPDEVRRMMAEIDTDGDGFISFDE 67
Query: 93 FIEM 96
F +
Sbjct: 68 FTDF 71
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 114 FQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRN 173
F+ FD NGD KIS+ EL + L+ +G + D R+M+ +D DGDG I DEF N
Sbjct: 17 FKRFDTNGDGKISSSELGDALKTLG-SVTPDEVRRMMAEIDTDGDGFISFDEFTDFARAN 75
>pdb|2EC6|B Chain B, Placopecten Striated Muscle Myosin Ii
Length = 133
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
+QEM++ F D N+DG I ++ S LG+ E+ + + G ++F F
Sbjct: 1 MQEMKEAFTMIDQNRDGFIDINDLKEEFSSLGRTPDDKELTAMLK----EAPGPLNFTMF 56
Query: 94 IEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGV 153
+ + D + I+ AF +FD + KK++ E + ++L MG+ ++ D R +
Sbjct: 57 LSIFSDKLSGTDSEETIRNAFGMFDEDATKKLNIEYIKDLLENMGDNFNKDEMRMTFKEA 116
Query: 154 DADGDGLIDMDEFMTMM 170
+G G D F+ M+
Sbjct: 117 PVEG-GKFDYVRFVAMI 132
>pdb|1KK8|B Chain B, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 139
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 66/137 (48%), Gaps = 5/137 (3%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
+QEM++ F D ++DG +S+++ + LG+ E+ + + G ++F F
Sbjct: 5 IQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLK----EAPGPLNFTMF 60
Query: 94 IEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGV 153
+ + D + I+ AF +FD KK++ E + ++L MG+ ++ D R +
Sbjct: 61 LSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEA 120
Query: 154 DADGDGLIDMDEFMTMM 170
+G G D +F M+
Sbjct: 121 PVEG-GKFDYVKFTAMI 136
>pdb|1DFK|Y Chain Y, Nucleotide-Free Scallop Myosin S1-Near Rigor State
pdb|1DFL|Y Chain Y, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|W Chain W, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
Length = 139
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 67/140 (47%), Gaps = 5/140 (3%)
Query: 31 RSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDF 90
+ +QEM++ F D ++DG +S+++ + LG+ E+ + + G ++F
Sbjct: 3 QKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLK----EAPGPLNF 58
Query: 91 KEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMI 150
F+ + D + I+ AF +FD KK++ E + ++L MG+ ++ D R
Sbjct: 59 TMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTF 118
Query: 151 RGVDADGDGLIDMDEFMTMM 170
+ +G G D +F M+
Sbjct: 119 KEAPVEG-GKFDYVKFTAMI 137
>pdb|1WDC|B Chain B, Scallop Myosin Regulatory Domain
pdb|1B7T|Y Chain Y, Myosin Digested By Papain
pdb|1KK7|Y Chain Y, Scallop Myosin In The Near Rigor Conformation
pdb|1L2O|B Chain B, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|B Chain B, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|B Chain B, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
pdb|1QVI|Y Chain Y, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|Y Chain Y, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|B Chain B, Structure Of Nucleotide-free Scallop Myosin S1
pdb|3JTD|B Chain B, Calcium-Free Scallop Myosin Regulatory Domain With
Elc-D19a Point Mutation
pdb|3JVT|B Chain B, Calcium-Bound Scallop Myosin Regulatory Domain (Lever Arm)
With Reconstituted Complete Light Chains
Length = 156
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 69/145 (47%), Gaps = 5/145 (3%)
Query: 26 VPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKD 85
+ + + +QEM++ F D ++DG +S+++ + LG+ E+ + +
Sbjct: 9 LTKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLK----EAP 64
Query: 86 GYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDS 145
G ++F F+ + D + I+ AF +FD KK++ E + ++L MG+ ++ D
Sbjct: 65 GPLNFTMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDE 124
Query: 146 CRKMIRGVDADGDGLIDMDEFMTMM 170
R + +G G D +F M+
Sbjct: 125 MRMTFKEAPVEG-GKFDYVKFTAMI 148
>pdb|1SCM|B Chain B, Structure Of The Regulatory Domain Of Scallop Myosin At
2.8 Angstroms Resolution
Length = 145
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 67/140 (47%), Gaps = 5/140 (3%)
Query: 31 RSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDF 90
+ +QEM++ F D ++DG +S+++ + LG+ E+ + + G ++F
Sbjct: 3 QKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLK----EAPGPLNF 58
Query: 91 KEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMI 150
F+ + D + I+ AF +FD KK++ E + ++L MG+ ++ D R
Sbjct: 59 TMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTF 118
Query: 151 RGVDADGDGLIDMDEFMTMM 170
+ +G G D +F M+
Sbjct: 119 KEAPVEG-GKFDYVKFTAMI 137
>pdb|2BL0|C Chain C, Physarum Polycephalum Myosin Ii Regulatory Domain
Length = 142
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
V E ++ F+ FD+ + G I+++ + L G + A + F D +G I F EF
Sbjct: 5 VSEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEF 64
Query: 94 IEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGV 153
+ MM ++ ++ AF+ FD G I L + L +G++ + + G+
Sbjct: 65 LSMMGRRMKQTTSEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFL-GI 123
Query: 154 DADGDGLIDMDEFMTMM 170
G I D F+ M
Sbjct: 124 TETEKGQIRYDNFINTM 140
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 101 GDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGL 160
GD++V ++ + AF+LFD I+ E L VL++ G + + +M DA G+G
Sbjct: 1 GDDQV--SEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGK 58
Query: 161 IDMDEFMTMMTRNVK 175
I EF++MM R +K
Sbjct: 59 IQFPEFLSMMGRRMK 73
>pdb|1SMG|A Chain A, Calcium-Bound E41a Mutant Of The N-Domain Of Chicken
Troponin C, Nmr, 40 Structures
Length = 90
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 109 DIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMT 168
+ + AF +FD +G IS + L V+R +G+ + + +I VD DG G ID +EF+
Sbjct: 21 EFKAAFDMFDADGGGDISTKALGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLV 80
Query: 169 MMTRNVK 175
MM R +K
Sbjct: 81 MMVRQMK 87
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
S + E + FD FD + G IS + + +LG+ +K E+ +D D G ID
Sbjct: 15 SEEMIAEFKAAFDMFDADGGGDISTKALGTVMRMLGQNPTKEELDAIIEEVDEDGSGTID 74
Query: 90 FKEFIEMM 97
F+EF+ MM
Sbjct: 75 FEEFLVMM 82
>pdb|2B1U|A Chain A, Solution Structure Of Calmodulin-Like Skin Protein C
Terminal Domain
Length = 71
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 42/68 (61%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
+R+ +++++ F FD + DG I+ DE A++ LG+ + + E+ R D D+DG ++
Sbjct: 1 ARAGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVN 60
Query: 90 FKEFIEMM 97
++EF M+
Sbjct: 61 YEEFARML 68
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 104 RVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDM 163
R D+Q AF+ FD +GD I+ +EL + +G+ + MIR D D DG ++
Sbjct: 2 RAGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNY 61
Query: 164 DEFMTMMTR 172
+EF M+ +
Sbjct: 62 EEFARMLAQ 70
>pdb|1NPQ|A Chain A, Structure Of A Rhodamine-Labeled N-Domain Troponin C
Mutant (Ca2+ Saturated) In Complex With Skeletal
Troponin I 115- 131
Length = 90
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 109 DIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMT 168
+ + AF +FD +G IS +EL V+R +G+ + +I VD DG G ID +EF+
Sbjct: 21 EFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKCELDAIICEVDEDGSGTIDFEEFLV 80
Query: 169 MMTRNVK 175
MM R +K
Sbjct: 81 MMVRQMK 87
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
S + E + FD FD + G IS E + + +LG+ +K E+ +D D G ID
Sbjct: 15 SEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKCELDAIICEVDEDGSGTID 74
Query: 90 FKEFIEMM 97
F+EF+ MM
Sbjct: 75 FEEFLVMM 82
>pdb|2W4T|Y Chain Y, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|Y Chain Y, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|Y Chain Y, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 136
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 66/137 (48%), Gaps = 5/137 (3%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
+QEM++ F D ++DG +S+++ + LG+ E+ + + G ++F F
Sbjct: 3 IQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLK----EAPGPLNFTMF 58
Query: 94 IEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGV 153
+ + D + I+ AF +FD KK++ E + ++L MG+ ++ D R +
Sbjct: 59 LSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEA 118
Query: 154 DADGDGLIDMDEFMTMM 170
+G G D +F M+
Sbjct: 119 PVEG-GKFDYVKFTAMI 134
>pdb|2JOJ|A Chain A, Nmr Solution Structure Of N-Terminal Domain Of Euplotes
Octocarinatus Centrin
Length = 77
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
S QE+++ FD FDTNK G I E A+ LG + K E+ + D + +GYI
Sbjct: 2 SEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIG 61
Query: 90 FKEFIEMMHDMGDNR 104
F +F+++M + NR
Sbjct: 62 FDDFLDIMTEKIKNR 76
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 106 KKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDE 165
+K +I+ AF LFD N I EL +R +G +++ D +G+G I D+
Sbjct: 5 QKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDD 64
Query: 166 FMTMMTRNVK 175
F+ +MT +K
Sbjct: 65 FLDIMTEKIK 74
>pdb|2OS8|B Chain B, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|B Chain B, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 157
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 5/145 (3%)
Query: 26 VPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKD 85
+ + + +QEM++ F D N+DG I ++ S LG+ E+ + +
Sbjct: 10 LTKLPQKQIQEMKEAFTMIDQNRDGFIDINDLKEMFSSLGRTPDDKELTAMLK----EAP 65
Query: 86 GYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDS 145
G ++F F+ + D + I+ AF +FD KK++ E + ++L MG+ ++ D
Sbjct: 66 GPLNFTMFLSIFSDKLSGTDSEETIRNAFGMFDELDTKKLNIEYIKDLLENMGDNFNKDE 125
Query: 146 CRKMIRGVDADGDGLIDMDEFMTMM 170
R + +G G D F+ M+
Sbjct: 126 MRMTFKEAPVEG-GKFDYVRFVAMI 149
>pdb|2KN2|A Chain A, Solution Structure Of The C-Terminal Domain Of Soybean
Calmodulin Isoform 4 Fused With The Calmodulin-Binding
Domain Of Ntmkp1
Length = 92
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 41/62 (66%)
Query: 109 DIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMT 168
+++ AF++FD + + ISA EL V+ +GEK + + +MI+ D DGDG ++ +EF+
Sbjct: 10 ELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVK 69
Query: 169 MM 170
MM
Sbjct: 70 MM 71
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 39/63 (61%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
+E+++ F FD +++G IS E + LG+ ++ E+ + + D D DG ++++EF+
Sbjct: 9 EELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFV 68
Query: 95 EMM 97
+MM
Sbjct: 69 KMM 71
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 69 SKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAE 128
++ E+ ++F+ D D++GYI E +M ++G+ ++ +++ + DL+GD +++ E
Sbjct: 7 AEEELKEAFKVFDKDQNGYISASELRHVMINLGE-KLTDEEVEQMIKEADLDGDGQVNYE 65
Query: 129 ELMEVL 134
E ++++
Sbjct: 66 EFVKMM 71
>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
Length = 193
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 13/103 (12%)
Query: 77 FRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLR- 135
FR D + DG IDF+EFI + ++++ ++ AF ++DL+G+ IS E++E+++
Sbjct: 69 FRTFDANGDGTIDFREFIIALSVTSRGKLEQK-LKWAFSMYDLDGNGYISKAEMLEIVQA 127
Query: 136 ---------KMGEKYSLDSCR--KMIRGVDADGDGLIDMDEFM 167
KM E S R K+ R +D + DG + ++EF+
Sbjct: 128 IYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFI 170
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 11/104 (10%)
Query: 39 QVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMH 98
VF FD N DG I E+ ALSV +G + ++ +F D D +GYI E +E++
Sbjct: 67 HVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQ 126
Query: 99 DMG-----------DNRVKKNDIQGAFQLFDLNGDKKISAEELM 131
+ D + + F+ D N D K+S EE +
Sbjct: 127 AIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFI 170
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 15/52 (28%)
Query: 6 SPQLNQPPKESMPKERQNPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEY 57
S + P ES P++R ++F + DTN+DGK+S +E+
Sbjct: 133 SSVMKMPEDESTPEKRTE---------------KIFRQMDTNRDGKLSLEEF 169
>pdb|1H4B|A Chain A, Solution Structure Of The Birch Pollen Allergen Bet V 4
Length = 84
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 36 EMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIE 95
E ++F +FD N DGKIS E AL LG I+ E+ IDTD DG+I F+EF +
Sbjct: 10 ERERIFKRFDANGDGKISAAELGEALKTLGS-ITPDEVKHMMAEIDTDGDGFISFQEFTD 68
Query: 96 M 96
Sbjct: 69 F 69
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 114 FQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEF 166
F+ FD NGD KISA EL E L+ +G + D + M+ +D DGDG I EF
Sbjct: 15 FKRFDANGDGKISAAELGEALKTLG-SITPDEVKHMMAEIDTDGDGFISFQEF 66
>pdb|3DD4|A Chain A, Structural Basis Of Kchip4a Modulation Of Kv4.3 Slow
Inactivation
Length = 229
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 57/108 (52%), Gaps = 11/108 (10%)
Query: 40 VFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHD 99
+F+ FDT+ +G +S +++ LS+L +G + ++ +F D +KDGYI +E +++M
Sbjct: 107 LFNAFDTDHNGAVSFEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKA 166
Query: 100 MGDNRVK-----------KNDIQGAFQLFDLNGDKKISAEELMEVLRK 136
+ D K + ++ FQ D N D ++ +E +E +K
Sbjct: 167 IYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESCQK 214
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 20/101 (19%)
Query: 31 RSNVQE-MRQVFDKFDTNKDGKISQDEY------------NSALSVLGKGISKAEMAKSF 77
R VQE + F+ +D NKDG I+++E VL + + + F
Sbjct: 133 RGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFF 192
Query: 78 RFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFD 118
+ +D +KDG + EFIE K +I + QLF+
Sbjct: 193 QKMDKNKDGVVTIDEFIESCQ-------KDENIMRSMQLFE 226
>pdb|2ROB|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 4 C-Terminal Domain
Length = 70
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 41/62 (66%)
Query: 109 DIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMT 168
+++ AF++FD + + ISA EL V+ +GEK + + +MI+ D DGDG ++ +EF+
Sbjct: 5 ELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVK 64
Query: 169 MM 170
MM
Sbjct: 65 MM 66
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 39/63 (61%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
+E+++ F FD +++G IS E + LG+ ++ E+ + + D D DG ++++EF+
Sbjct: 4 EELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFV 63
Query: 95 EMM 97
+MM
Sbjct: 64 KMM 66
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 69 SKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAE 128
++ E+ ++F+ D D++GYI E +M ++G+ ++ +++ + DL+GD +++ E
Sbjct: 2 AEEELKEAFKVFDKDQNGYISASELRHVMINLGE-KLTDEEVEQMIKEADLDGDGQVNYE 60
Query: 129 ELMEVL 134
E ++++
Sbjct: 61 EFVKMM 66
>pdb|2RO9|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 1 C-Terminal Domain
Length = 69
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 42/64 (65%)
Query: 107 KNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEF 166
+ +++ AF++FD + + ISA EL V+ +GEK + + +MIR D DGDG I+ +EF
Sbjct: 3 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 62
Query: 167 MTMM 170
+ +M
Sbjct: 63 VKVM 66
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 40/63 (63%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
+E+++ F FD +++G IS E ++ LG+ ++ E+ + R D D DG I+++EF+
Sbjct: 4 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFV 63
Query: 95 EMM 97
++M
Sbjct: 64 KVM 66
>pdb|1JSA|A Chain A, Myristoylated Recoverin With Two Calciums Bound, Nmr, 24
Structures
Length = 201
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 50 GKISQDEYNSALS-VLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKN 108
G+I++ E+ + S + KA FR D + DG +DFKE++ +H + +
Sbjct: 41 GRITRQEFQTIYSKFFPEADPKAYAQHVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQK 100
Query: 109 DIQGAFQLFDLNGDKKISAEELMEVLRKM 137
++ AF L+D++G+ IS E++E++ +
Sbjct: 101 -LEWAFSLYDVDGNGTISKNEVLEIVTAI 128
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 38 RQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMM 97
+ VF FD N DG + EY AL + G + ++ +F D D +G I E +E++
Sbjct: 66 QHVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIV 125
>pdb|1OMR|A Chain A, Non-Myristoylated Wild-Type Bovine Recoverin With Calcium
Bound To Ef- Hand 3
pdb|1REC|A Chain A, Three-Dimensional Structure Of Recoverin, A Calcium Sensor
In Vision
pdb|1IKU|A Chain A, Myristoylated Recoverin In The Calcium-Free State, Nmr, 22
Structures
Length = 201
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 50 GKISQDEYNSALS-VLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKN 108
G+I++ E+ + S + KA FR D + DG +DFKE++ +H + +
Sbjct: 41 GRITRQEFQTIYSKFFPEADPKAYAQHVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQK 100
Query: 109 DIQGAFQLFDLNGDKKISAEELMEVLRKM 137
++ AF L+D++G+ IS E++E++ +
Sbjct: 101 -LEWAFSLYDVDGNGTISKNEVLEIVTAI 128
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 38 RQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMM 97
+ VF FD N DG + EY AL + G + ++ +F D D +G I E +E++
Sbjct: 66 QHVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIV 125
>pdb|2I94|A Chain A, Nmr Structure Of Recoverin Bound To Rhodopsin Kinase
Length = 202
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 50 GKISQDEYNSALS-VLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKN 108
G+I++ E+ + S + KA FR D + DG +DFKE++ +H + +
Sbjct: 42 GRITRQEFQTIYSKFFPEADPKAYAQHVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQK 101
Query: 109 DIQGAFQLFDLNGDKKISAEELMEVLRKM 137
++ AF L+D++G+ IS E++E++ +
Sbjct: 102 -LEWAFSLYDVDGNGTISKNEVLEIVTAI 129
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 38 RQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMM 97
+ VF FD N DG + EY AL + G + ++ +F D D +G I E +E++
Sbjct: 67 QHVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIV 126
>pdb|2HET|A Chain A, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|B Chain B, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|C Chain C, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|D Chain D, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
Length = 189
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 50 GKISQDEYNSALS-VLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKN 108
G+I++ E+ + S + KA FR D + DG +DFKE++ +H + +
Sbjct: 41 GRITRQEFQTIYSKFFPEADPKAYAQHVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQK 100
Query: 109 DIQGAFQLFDLNGDKKISAEELMEVLRKM 137
++ AF L+D++G+ IS E++E++ +
Sbjct: 101 -LEWAFSLYDVDGNGTISKNEVLEIVTAI 128
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 38 RQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMM 97
+ VF FD N DG + EY AL + G + ++ +F D D +G I E +E++
Sbjct: 66 QHVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIV 125
>pdb|3PN7|B Chain B, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3PN7|E Chain E, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3TS5|B Chain B, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TS5|E Chain E, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
Length = 161
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 28 RASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGY 87
R + +QEM++ F D N+DG I ++ S LG+ E+ + + G
Sbjct: 16 RLPQKLMQEMKEAFTMIDQNRDGFIDINDLKEMFSSLGRTPDDKELTAMLK----EAPGP 71
Query: 88 IDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCR 147
++F F+ + D + I+ AF +FD KK++ E + ++L MG+ ++ D R
Sbjct: 72 LNFTMFLSIFSDKLSGTDSEETIRNAFGMFDELDTKKLNIEYIKDLLENMGDNFNKDEMR 131
Query: 148 KMIRGVDADGDGLIDMDEFMTMM 170
+ +G G D F+ M+
Sbjct: 132 MTFKEAPVEG-GKFDYVRFVAMI 153
>pdb|1Y1X|A Chain A, Structural Analysis Of A Homolog Of Programmed Cell Death
6 Protein From Leishmania Major Friedlin
pdb|1Y1X|B Chain B, Structural Analysis Of A Homolog Of Programmed Cell Death
6 Protein From Leishmania Major Friedlin
Length = 191
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 7/135 (5%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
QE+ + F DT+ G IS E N+ALS G S A K D + G I F EF
Sbjct: 27 QELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFK 86
Query: 95 EMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVD 154
++ H + R F+ D +GD ++ + E+ L G + S + + ++R D
Sbjct: 87 DLHHFILSMR-------EGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFD 139
Query: 155 ADGDGLIDMDEFMTM 169
G + D+++ +
Sbjct: 140 RQRRGSLGFDDYVEL 154
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
+ MR+ F K D++ DG++ +E +AL G +S+ R D + G + F ++
Sbjct: 92 ILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDY 151
Query: 94 IEM 96
+E+
Sbjct: 152 VEL 154
>pdb|3TUY|B Chain B, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
pdb|3TUY|E Chain E, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
Length = 161
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Query: 28 RASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGY 87
R + +QEM++ F D N+DG I ++ S LG+ E+ + + G
Sbjct: 16 RLPQKLMQEMKEAFTMIDQNRDGFIDINDLKEMFSSLGRTPDDKELTAMLK----EAPGP 71
Query: 88 IDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCR 147
++F F+ + D + I+ AF +FD KK++ E + ++L MG+ ++ D R
Sbjct: 72 LNFTMFLSIFSDKLSGTDSEETIRNAFGMFDELDTKKLNIEYIKDLLENMGDNFNKDEMR 131
Query: 148 KMIRGVDADGDGLIDMDEFMTMM 170
+ +G G D F+ M+
Sbjct: 132 MTFKEAPVEG-GKFDYVRFVAMI 153
>pdb|1FPW|A Chain A, Structure Of Yeast Frequenin
pdb|2JU0|A Chain A, Structure Of Yeast Frequenin Bound To Pdtins 4-Kinase
Length = 190
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 13/102 (12%)
Query: 77 FRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVL-- 134
F D D +G+I F+EFI ++ +++ + AF+L+DLN D I+ +E++ ++
Sbjct: 69 FTVFDKDNNGFIHFEEFITVLSTTSRGTLEEK-LSWAFELYDLNHDGYITFDEMLTIVAS 127
Query: 135 --RKMGEKYSLDS--------CRKMIRGVDADGDGLIDMDEF 166
+ MG +L+ +K+ + +D + DG I +DEF
Sbjct: 128 VYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEF 169
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 20/106 (18%)
Query: 26 VPRASRSNVQE-MRQVFDKFDTNKDGKISQDE----YNSALSVLGKGISKAE-------- 72
+ SR ++E + F+ +D N DG I+ DE S ++G ++ E
Sbjct: 89 LSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMR 148
Query: 73 MAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFD 118
+ K F+ +D ++DGYI EF E ++V + I GA L+D
Sbjct: 149 VKKIFKLMDKNEDGYITLDEFRE------GSKVDPS-IIGALNLYD 187
>pdb|2D8N|A Chain A, Crystal Structure Of Human Recoverin At 2.2 A Resolution
Length = 207
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 50 GKISQDEYNSALSVLGKGI-SKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKN 108
G+I+Q ++ S + KA FR D++ DG +DFKE++ +H + +
Sbjct: 49 GRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGTLDFKEYVIALHXTTAGKTNQK 108
Query: 109 DIQGAFQLFDLNGDKKISAEELMEVLRKM 137
++ AF L+D++G+ IS E++E++ +
Sbjct: 109 -LEWAFSLYDVDGNGTISKNEVLEIVXAI 136
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 13/108 (12%)
Query: 38 RQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMM 97
+ VF FD+N DG + EY AL G + ++ +F D D +G I E +E++
Sbjct: 74 QHVFRSFDSNLDGTLDFKEYVIALHXTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIV 133
Query: 98 HDM-------------GDNRVKKNDIQGAFQLFDLNGDKKISAEELME 132
+ D + + ++ F N D K++ +E +E
Sbjct: 134 XAIFKXITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIE 181
>pdb|2K2A|A Chain A, Solution Structure Of The Apo C Terminal Domain Of
Lethoceru C Isoform F1
Length = 70
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%)
Query: 107 KNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEF 166
+ +++ AF+L+D G+ IS + + E+L ++ E S + MI +DADG G +D +EF
Sbjct: 2 QQELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEEF 61
Query: 167 MTMMT 171
M +MT
Sbjct: 62 MGVMT 66
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
QE+R+ F +D +G IS D L+ L + +S ++ ID D G +DF+EF+
Sbjct: 3 QELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEEFM 62
Query: 95 EMM 97
+M
Sbjct: 63 GVM 65
>pdb|1LA3|A Chain A, Solution Structure Of Recoverin Mutant, E85q
Length = 201
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 50 GKISQDEYNSALS-VLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKN 108
G+I++ E+ + S + KA FR D + DG +DFK+++ +H + +
Sbjct: 41 GRITRQEFQTIYSKFFPEADPKAYAQHVFRSFDANSDGTLDFKQYVIALHMTSAGKTNQK 100
Query: 109 DIQGAFQLFDLNGDKKISAEELMEVLRKM 137
++ AF L+D++G+ IS E++E++ +
Sbjct: 101 -LEWAFSLYDVDGNGTISKNEVLEIVTAI 128
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 38 RQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMM 97
+ VF FD N DG + +Y AL + G + ++ +F D D +G I E +E++
Sbjct: 66 QHVFRSFDANSDGTLDFKQYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIV 125
>pdb|1OMV|A Chain A, Non-Myristoylated Bovine Recoverin (E85q Mutant) With
Calcium Bound To Ef-Hand 3
Length = 201
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 50 GKISQDEYNSALS-VLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKN 108
G+I++ E+ + S + KA FR D + DG +DFK+++ +H + +
Sbjct: 41 GRITRQEFQTIYSKFFPEADPKAYAQHVFRSFDANSDGTLDFKQYVIALHMTSAGKTNQK 100
Query: 109 DIQGAFQLFDLNGDKKISAEELMEVLRKM 137
++ AF L+D++G+ IS E++E++ +
Sbjct: 101 -LEWAFSLYDVDGNGTISKNEVLEIVTAI 128
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 38 RQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMM 97
+ VF FD N DG + +Y AL + G + ++ +F D D +G I E +E++
Sbjct: 66 QHVFRSFDANSDGTLDFKQYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIV 125
>pdb|2LC5|A Chain A, Calmodulin-Like Protein From Entamoeba Histolytica:
Solution Structure And Calcium-Binding Properties Of A
Partially Folded Protein
Length = 85
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
AFQLFD + D K++AEEL V+R +G + ++++ D D G D + F+T+M
Sbjct: 19 AFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFLTIM 76
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 36/67 (53%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
QE ++ F FD + D K++ +E + + LG +K ++++ + D D G D + F+
Sbjct: 14 QEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFL 73
Query: 95 EMMHDMG 101
+M + G
Sbjct: 74 TIMLEYG 80
>pdb|1M8Q|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|R Chain R, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|L Chain L, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|O Chain O, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|R Chain R, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|L Chain L, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|O Chain O, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|R Chain R, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|L Chain L, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|O Chain O, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|U Chain U, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|L Chain L, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|O Chain O, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|R Chain R, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|L Chain L, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|L Chain L, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|R Chain R, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|L Chain L, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|O Chain O, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|R Chain R, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|L Chain L, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|O Chain O, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|R Chain R, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|L Chain L, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|C Chain C, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|F Chain F, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|I Chain I, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|L Chain L, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|O Chain O, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|R Chain R, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 147
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDK--DGY 87
S++ + ++ F FD D KI+ + LG+ + AE+ K ++
Sbjct: 1 SKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAA 60
Query: 88 IDFKEFIEMMHDMGDNRVKKN--DIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDS 145
I F+EF+ M+ +N+ + D ++FD G+ + EL VL +GEK + +
Sbjct: 61 ITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEE 120
Query: 146 CRKMIRGVDADGDGLIDMDEFM 167
++++G + D +G I+ + F+
Sbjct: 121 VEELMKGQE-DSNGCINYEAFV 141
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 103 NRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDAD--GDGL 160
++ +D + AF LFD GD KI+A ++ ++ R +G+ + K++ +
Sbjct: 1 SKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAA 60
Query: 161 IDMDEFMTMM 170
I +EF+ M+
Sbjct: 61 ITFEEFLPML 70
>pdb|2MYS|C Chain C, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 149
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDK--DGY 87
S++ + ++ F FD D KI+ + LG+ + AE+ K ++
Sbjct: 3 SKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAA 62
Query: 88 IDFKEFIEMMHDMGDNRVKKN--DIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDS 145
I F+EF+ M+ +N+ + D ++FD G+ + EL VL +GEK + +
Sbjct: 63 ITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEE 122
Query: 146 CRKMIRGVDADGDGLIDMDEFM 167
++++G + D +G I+ + F+
Sbjct: 123 VEELMKGQE-DSNGCINYEAFV 143
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 103 NRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDAD--GDGL 160
++ +D + AF LFD GD KI+A ++ ++ R +G+ + K++ +
Sbjct: 3 SKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAA 62
Query: 161 IDMDEFMTMM 170
I +EF+ M+
Sbjct: 63 ITFEEFLPML 72
>pdb|2L2E|A Chain A, Solution Nmr Structure Of Myristoylated Ncs1p In Apo Form
Length = 190
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Query: 28 RASRSNVQEMRQVFDKFDTN-KDGKISQDEYNSAL-SVLGKGISKAEMAKSFRFIDTDKD 85
R++R + +E++Q + F + G +++ E+ G A F D DK+
Sbjct: 18 RSTRFDKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKN 77
Query: 86 GYIDFKEFIEMMHDMGDNRVKKND-IQGAFQLFDLNGDKKISAEELMEVL 134
GYIDFKEFI + +R + ND + AFQL+DL+ + IS +E++ ++
Sbjct: 78 GYIDFKEFICALSVT--SRGELNDKLIWAFQLYDLDNNGLISYDEMLRIV 125
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 40 VFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKE---FIEM 96
VF+ FD +K+G I E+ ALSV +G ++ +F+ D D +G I + E ++
Sbjct: 68 VFNVFDADKNGYIDFKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDA 127
Query: 97 MHDMGDNRVK--------KNDIQGAFQLFDLNGDKKISAEELME 132
++ M + VK + + F + D N D +++ EE E
Sbjct: 128 IYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCE 171
>pdb|1ZMZ|A Chain A, Solution Structure Of The N-Terminal Domain (M1-S98) Of
Human Centrin 2
Length = 98
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%)
Query: 106 KKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDE 165
+K +I+ AF LFD +G I +EL +R +G + + +KMI +D +G G ++ +
Sbjct: 29 QKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGD 88
Query: 166 FMTMMTRNV 174
F+T+MT+ +
Sbjct: 89 FLTVMTQKM 97
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 16 SMPKERQNPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAK 75
S ++R +P P + QE+R+ FD FD + G I E A+ LG K E+ K
Sbjct: 13 SSQRKRMSPK-PELTEEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKK 71
Query: 76 SFRFIDTDKDGYIDFKEFIEMM 97
ID + G ++F +F+ +M
Sbjct: 72 MISEIDKEGTGKMNFGDFLTVM 93
>pdb|3RV5|A Chain A, Crystal Structure Of Human Cardiac Troponin C Regulatory
Domain In Complex With Cadmium And Deoxycholic Acid
pdb|3RV5|B Chain B, Crystal Structure Of Human Cardiac Troponin C Regulatory
Domain In Complex With Cadmium And Deoxycholic Acid
pdb|3RV5|C Chain C, Crystal Structure Of Human Cardiac Troponin C Regulatory
Domain In Complex With Cadmium And Deoxycholic Acid
pdb|3RV5|D Chain D, Crystal Structure Of Human Cardiac Troponin C Regulatory
Domain In Complex With Cadmium And Deoxycholic Acid
Length = 89
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 106 KKNDIQGAFQLFDLNG-DKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMD 164
+KN+ + AF +F L D IS +EL +V R +G+ + + ++ I VD DG G +D D
Sbjct: 16 QKNEFKAAFDIFVLGAEDGCISTKELGKVXRXLGQNPTPEELQEXIDEVDEDGSGTVDFD 75
Query: 165 EFMTMMTRNVK 175
EF+ R K
Sbjct: 76 EFLVXXVRCXK 86
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 25 SVPRASRSNVQEMRQVFDKFDTN-KDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTD 83
+V + + E + FD F +DG IS E LG+ + E+ + +D D
Sbjct: 8 AVEQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVXRXLGQNPTPEELQEXIDEVDED 67
Query: 84 KDGYIDFKEFI 94
G +DF EF+
Sbjct: 68 GSGTVDFDEFL 78
>pdb|1S1E|A Chain A, Crystal Structure Of Kv Channel-Interacting Protein 1
(Kchip-1)
Length = 224
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 54/104 (51%), Gaps = 11/104 (10%)
Query: 40 VFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHD 99
+F+ FDT + G + +++ +ALS+L +G ++ +F D +KDGYI+ +E ++++
Sbjct: 94 LFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKA 153
Query: 100 MGDNRVK-----------KNDIQGAFQLFDLNGDKKISAEELME 132
+ D K + + FQ D N D ++ +E +E
Sbjct: 154 IYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLE 197
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 57/103 (55%), Gaps = 13/103 (12%)
Query: 77 FRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRK 136
F DT + G + F++F+ + + V + ++ F L+D+N D I+ EE+M++++
Sbjct: 95 FNAFDTTQTGSVKFEDFVTALSILLRGTVHEK-LRWTFNLYDINKDGYINKEEMMDIVKA 153
Query: 137 MGE---KYSL-----DSCRKMI----RGVDADGDGLIDMDEFM 167
+ + KY+ D+ R+ + + +D + DG++ +DEF+
Sbjct: 154 IYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFL 196
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Query: 31 RSNVQE-MRQVFDKFDTNKDGKISQDEY------------NSALSVLGKGISKAEMAKSF 77
R V E +R F+ +D NKDG I+++E VL + + + F
Sbjct: 120 RGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFF 179
Query: 78 RFIDTDKDGYIDFKEFIE 95
+ +D +KDG + EF+E
Sbjct: 180 QKMDKNKDGIVTLDEFLE 197
>pdb|1JBA|A Chain A, Unmyristoylated Gcap-2 With Three Calcium Ions Bound
Length = 204
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 16/119 (13%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
Q + +F FDTN D I EY +AL+++ +G + ++ +F+ D D++G ID +E
Sbjct: 58 TQYVEAMFRAFDTNGDNTIDFLEYVAALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQEL 117
Query: 94 IEMMHDM----------------GDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRK 136
++++ + G + + F L D NGD ++S E +E R+
Sbjct: 118 LDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGARR 176
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Query: 78 RFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM 137
+F++ G + EF + + DN ++ F+ FD NGD I E + L +
Sbjct: 30 KFLEECPSGTLFMHEF-KRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLEYVAALNLV 88
Query: 138 GEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
+ + D D +G ID E + ++
Sbjct: 89 LRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIV 121
>pdb|2LV7|A Chain A, Solution Structure Of Ca2+-Bound Cabp7 N-Terminal Doman
Length = 100
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 40/64 (62%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
++E+R+ F FD + +G IS+ E +A+ LG ++ E+ + +D D DG +DF+EF
Sbjct: 35 LEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEF 94
Query: 94 IEMM 97
+ ++
Sbjct: 95 VTLL 98
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 40/62 (64%)
Query: 109 DIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMT 168
+I+ AF++FD +G+ IS +EL +R +G + +I+ +D DGDG +D +EF+T
Sbjct: 37 EIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVT 96
Query: 169 MM 170
++
Sbjct: 97 LL 98
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 72 EMAKSFRFIDTDKDGYIDFKEFIEMMHDMG--DNRVKKNDIQGAFQLFDLNGDKKISAEE 129
E+ ++F+ D D +G+I +E M +G N V +++ Q D++GD ++ EE
Sbjct: 37 EIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEV---ELEVIIQRLDMDGDGQVDFEE 93
Query: 130 LMEVL 134
+ +L
Sbjct: 94 FVTLL 98
>pdb|1JC2|A Chain A, Complex Of The C-Domain Of Troponin C With Residues 1-40
Of Troponin I
Length = 76
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%)
Query: 109 DIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMT 168
++ F++FD N D I EEL E+LR GE + +++ D + DG ID DEF+
Sbjct: 11 ELANCFRIFDKNADGFIDIEELGEILRATGEHVIEEDIEDLMKDSDKNNDGRIDFDEFLK 70
Query: 169 MM 170
MM
Sbjct: 71 MM 72
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 65 GKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKK 124
KG S+ E+A FR D + DG+ID +E E++ G++ +++ DI+ + D N D +
Sbjct: 4 AKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVIEE-DIEDLMKDSDKNNDGR 62
Query: 125 ISAEELMEVL 134
I +E ++++
Sbjct: 63 IDFDEFLKMM 72
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
+E+ F FD N DG I +E L G+ + + ++ + D + DG IDF EF+
Sbjct: 10 EELANCFRIFDKNADGFIDIEELGEILRATGEHVIEEDIEDLMKDSDKNNDGRIDFDEFL 69
Query: 95 EMM 97
+MM
Sbjct: 70 KMM 72
>pdb|3I5G|C Chain C, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|C Chain C, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|C Chain C, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|C Chain C, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 159
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 7/144 (4%)
Query: 30 SRSNVQEMRQVFDKFD--TNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGY 87
++ ++E+R+VFD FD +DG + + L LG ++A++ + + Y
Sbjct: 4 TKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHGGTKKMGEKAY 63
Query: 88 IDFKEFIEMMHDMG--DNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDS 145
+E + + +M D ++ AF+ FD G IS+ E+ VL+ +GE+ + D
Sbjct: 64 -KLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQ 122
Query: 146 CRKMIRGVDA--DGDGLIDMDEFM 167
C + D D DG I ++ M
Sbjct: 123 CNDIFTFCDIREDIDGNIKYEDLM 146
>pdb|1F54|A Chain A, Solution Structure Of The Apo N-Terminal Domain Of Yeast
Calmodulin
pdb|1F55|A Chain A, Solution Structure Of The Calcium Bound N-Terminal Domain
Of Yeast Calmodulin
Length = 77
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
AF LFD + + IS+ EL V+R +G S ++ +D DG+ I+ EF+ +M+R
Sbjct: 15 AFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMSR 74
Query: 173 NVK 175
+K
Sbjct: 75 QLK 77
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
+ E ++ F FD + +G IS E + + LG S+AE+ ID D + I+F EF
Sbjct: 9 IAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEF 68
Query: 94 IEMM 97
+ +M
Sbjct: 69 LALM 72
>pdb|2NZ0|A Chain A, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|C Chain C, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 180
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 54/104 (51%), Gaps = 11/104 (10%)
Query: 40 VFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHD 99
+F+ FDT + G + +++ +ALS+L +G ++ +F D +KDGYI+ +E ++++
Sbjct: 58 LFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKA 117
Query: 100 MGDNRVK-----------KNDIQGAFQLFDLNGDKKISAEELME 132
+ D K + + FQ D N D ++ +E +E
Sbjct: 118 IYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLE 161
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 66/131 (50%), Gaps = 14/131 (10%)
Query: 50 GKISQDEYNSALS-VLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKN 108
G +++D + + G + F DT + G + F++F+ + + V +
Sbjct: 31 GVVNEDTFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEK 90
Query: 109 DIQGAFQLFDLNGDKKISAEELMEVLRKMGE---KYSL-----DSCRKMI----RGVDAD 156
++ F L+D+N D I+ EE+M++++ + + KY+ D+ R+ + + +D +
Sbjct: 91 -LRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKN 149
Query: 157 GDGLIDMDEFM 167
DG++ +DEF+
Sbjct: 150 KDGIVTLDEFL 160
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Query: 31 RSNVQE-MRQVFDKFDTNKDGKISQDEY------------NSALSVLGKGISKAEMAKSF 77
R V E +R F+ +D NKDG I+++E VL + + + F
Sbjct: 84 RGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFF 143
Query: 78 RFIDTDKDGYIDFKEFIE 95
+ +D +KDG + EF+E
Sbjct: 144 QKMDKNKDGIVTLDEFLE 161
>pdb|1S6C|A Chain A, Crystal Structure Of The Complex Between Kchip1 And Kv4.2
N1-30
Length = 183
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 54/104 (51%), Gaps = 11/104 (10%)
Query: 40 VFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHD 99
+F+ FDT + G + +++ +ALS+L +G ++ +F D +KDGYI+ +E ++++
Sbjct: 61 LFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKA 120
Query: 100 MGDNRVK-----------KNDIQGAFQLFDLNGDKKISAEELME 132
+ D K + + FQ D N D ++ +E +E
Sbjct: 121 IYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLE 164
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 57/103 (55%), Gaps = 13/103 (12%)
Query: 77 FRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRK 136
F DT + G + F++F+ + + V + ++ F L+D+N D I+ EE+M++++
Sbjct: 62 FNAFDTTQTGSVKFEDFVTALSILLRGTVHEK-LRWTFNLYDINKDGYINKEEMMDIVKA 120
Query: 137 MGE---KYSL-----DSCRKMI----RGVDADGDGLIDMDEFM 167
+ + KY+ D+ R+ + + +D + DG++ +DEF+
Sbjct: 121 IYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFL 163
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 13/78 (16%)
Query: 31 RSNVQE-MRQVFDKFDTNKDGKISQDE--------YN----SALSVLGKGISKAEMAKSF 77
R V E +R F+ +D NKDG I+++E Y+ VL + + + F
Sbjct: 87 RGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFF 146
Query: 78 RFIDTDKDGYIDFKEFIE 95
+ +D +KDG + EF+E
Sbjct: 147 QKMDKNKDGIVTLDEFLE 164
>pdb|2I2R|E Chain E, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|F Chain F, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|G Chain G, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|H Chain H, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|M Chain M, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|N Chain N, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|O Chain O, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|P Chain P, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 180
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Query: 38 RQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMM 97
+F+ FDT + G + +++ +ALS+L +G ++ +F D +KDGYI+ +E ++++
Sbjct: 56 HYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIV 115
Query: 98 HDMGD-----------NRVKKNDIQGAFQLFDLNGDKKISAEELME 132
+ D + + FQ D N D ++ +E +E
Sbjct: 116 KAIYDMMGAYTYPVLAEDTPRQHVDVFFQKMDKNKDGIVTLDEFLE 161
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 56/103 (54%), Gaps = 13/103 (12%)
Query: 77 FRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRK 136
F DT + G + F++F+ + + V + ++ F L+D+N D I+ EE+M++++
Sbjct: 59 FNAFDTTQTGSVKFEDFVTALSILLRGTVHEK-LRWTFNLYDINKDGYINKEEMMDIVKA 117
Query: 137 MGE---KYSL-----DSCRKMI----RGVDADGDGLIDMDEFM 167
+ + Y+ D+ R+ + + +D + DG++ +DEF+
Sbjct: 118 IYDMMGAYTYPVLAEDTPRQHVDVFFQKMDKNKDGIVTLDEFL 160
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 13/78 (16%)
Query: 31 RSNVQE-MRQVFDKFDTNKDGKISQDE--------YN----SALSVLGKGISKAEMAKSF 77
R V E +R F+ +D NKDG I+++E Y+ VL + + + F
Sbjct: 84 RGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGAYTYPVLAEDTPRQHVDVFF 143
Query: 78 RFIDTDKDGYIDFKEFIE 95
+ +D +KDG + EF+E
Sbjct: 144 QKMDKNKDGIVTLDEFLE 161
>pdb|2W4A|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 145
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAK-----SFRFIDTDKDGYI 88
+ + ++ F FD D KI+ + + LG+ + AE+ K S ++ K I
Sbjct: 3 INDFKEAFLLFDRTGDAKITLSQVGDIVRALGQNPTNAEINKILGNPSKEEMNAKK---I 59
Query: 89 DFKEFIEMMHDMGDNRVKKN--DIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSC 146
F+EF+ M+ +N+ + D ++FD G+ + EL VL +GEK + +
Sbjct: 60 TFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEV 119
Query: 147 RKMIRGVDADGDGLIDMDEFM 167
++++G + D +G I+ + F+
Sbjct: 120 EELMKGQE-DSNGCINYEAFV 139
>pdb|2HF5|A Chain A, The Structure And Function Of A Novel Two-Site Calcium-
Binding Fragment Of Calmodulin
Length = 68
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%)
Query: 71 AEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEEL 130
AE+ +D D +G IDF EF+ MM + + +I+ AF++FD +G+ ISA EL
Sbjct: 1 AELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAEL 60
Query: 131 MEVLRKMG 138
V+ +G
Sbjct: 61 RHVMTNLG 68
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 20/27 (74%)
Query: 149 MIRGVDADGDGLIDMDEFMTMMTRNVK 175
MI VDADG+G ID EF+TMM R +K
Sbjct: 6 MINEVDADGNGTIDFPEFLTMMARKMK 32
Score = 29.6 bits (65), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 36 EMRQVFDKFDTNKDGKISQDEYNSALSVLGKGI----SKAEMAKSFRFIDTDKDGYIDFK 91
E++ + ++ D + +G I E+ L+++ + + S+ E+ ++FR D D +GYI
Sbjct: 2 ELQDMINEVDADGNGTIDFPEF---LTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAA 58
Query: 92 EFIEMMHDMG 101
E +M ++G
Sbjct: 59 ELRHVMTNLG 68
>pdb|1M39|A Chain A, Solution Structure Of The C-Terminal Fragment (F86-I165)
Of The Human Centrin 2 In Calcium Saturated Form
Length = 89
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%)
Query: 88 IDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCR 147
++F +F+ +M + K +I AF+LFD + KIS + L V +++GE + + +
Sbjct: 1 MNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQ 60
Query: 148 KMIRGVDADGDGLIDMDEFMTMMTRN 173
+MI D DGDG + EF+ +M +
Sbjct: 61 EMIDEADRDGDGEVSEQEFLRIMKKT 86
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 69 SKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAE 128
+K E+ K+F+ D D+ G I FK + ++G+N + ++Q D +GD ++S +
Sbjct: 19 TKEEILKAFKLFDDDETGKISFKNLKRVAKELGEN-LTDEELQEMIDEADRDGDGEVSEQ 77
Query: 129 ELMEVLRK 136
E + +++K
Sbjct: 78 EFLRIMKK 85
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 29 ASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYI 88
+ + +E+ + F FD ++ GKIS LG+ ++ E+ + D D DG +
Sbjct: 15 SEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEV 74
Query: 89 DFKEFIEMM 97
+EF+ +M
Sbjct: 75 SEQEFLRIM 83
>pdb|1C7V|A Chain A, Nmr Solution Structure Of The Calcium-Bound C-Terminal
Domain (W81-S161) Of Calcium Vector Protein From
Amphioxus
pdb|1C7W|A Chain A, Nmr Solution Structure Of The Calcium-Bound C-Terminal
Domain (W81-S161) Of Calcium Vector Protein From
Amphioxus
Length = 81
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 107 KNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDS-CRKMIRGVDADGDGLIDMDE 165
+ +I AF++FD NGD I +E +++K+GE+ D+ + ++ D DG+G+ID+ E
Sbjct: 7 EEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPE 66
Query: 166 FMTMMTRN 173
FM ++ ++
Sbjct: 67 FMDLIKKS 74
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 38/65 (58%)
Query: 72 EMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELM 131
E+ ++F+ D + DG IDF EF +M +G+ + +++ A + D +G+ I E M
Sbjct: 9 EILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFM 68
Query: 132 EVLRK 136
++++K
Sbjct: 69 DLIKK 73
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLG-KGISKAEMAKSFRFIDTDKDGYIDFKEF 93
+E+ + F FD N DG I DE+ + +G + ++ AE+ ++ + D D +G ID EF
Sbjct: 8 EEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEF 67
Query: 94 IEMM 97
++++
Sbjct: 68 MDLI 71
>pdb|2W4A|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 150
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 64/143 (44%), Gaps = 5/143 (3%)
Query: 31 RSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGK-GISKAEMAKSFRFIDTDKDGYID 89
++ +Q+ ++ F D N+DG I +D+ + +G+ + E+ + + G I+
Sbjct: 8 QTQIQDFKEAFTVIDQNRDGIIDKDDLRETFAAMGRLNVKNEELDAMIK----EASGPIN 63
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F F+ M + ++ I GAF++ D +G I L E+L ++++ + + M
Sbjct: 64 FTVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTQCDRFTPEEIKNM 123
Query: 150 IRGVDADGDGLIDMDEFMTMMTR 172
D G +D ++T
Sbjct: 124 WAAFPPDVAGNVDYKNICYVITH 146
>pdb|2BEC|A Chain A, Crystal Structure Of Chp2 In Complex With Its Binding
Region In Nhe1 And Insights Into The Mechanism Of Ph
Regulation
Length = 202
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 106 KKNDIQGAFQLFDLNGDKKISAEELMEVLRKM-----GEKYSLDSCRKMIRGVDADGDGL 160
++N + AFQL+DL+ D KIS E+++VLR M E+ + + ++ D DGDG
Sbjct: 112 RRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGA 171
Query: 161 IDMDEF 166
+ EF
Sbjct: 172 VSFVEF 177
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 13 PKESMPKERQNPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVL-GKGISKA 71
P E E Q+P P S ++ F +D ++DGKIS+ E L ++ G +++
Sbjct: 92 PVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEE 151
Query: 72 EMA----KSFRFIDTDKDGYIDFKEFIEMMHDM 100
++ ++ + D D DG + F EF + + M
Sbjct: 152 QLENIADRTVQEADEDGDGAVSFVEFTKSLEKM 184
>pdb|1TIZ|A Chain A, Solution Structure Of A Calmodulin-Like Calcium-Binding
Domain From Arabidopsis Thaliana
Length = 67
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 38 RQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMM 97
++VF+KFD NKDGK+S DE+ ++ ++ K F ID D +G ++ EF +
Sbjct: 4 KRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCI 63
Query: 98 HDM 100
M
Sbjct: 64 EKM 66
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
F+ FD N D K+S +E EV ++ + K +D DG+G ++ DEF + + +
Sbjct: 6 VFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIEK 65
>pdb|2E30|A Chain A, Solution Structure Of The Cytoplasmic Region Of Na+H+
Exchanger 1 Complexed With Essential Cofactor
Calcineurin B Homologous Protein 1
Length = 195
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 26/164 (15%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNS----ALSVLGKGISKAEMAKSFRFIDTDKD 85
S S + + F D ++G +S++++ A++ LG I A + D+
Sbjct: 24 SHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFPEG-----EDQV 78
Query: 86 GYIDFKEFIEMMHDMGDNRVKK------------NDIQGAFQLFDLNGDKKISAEELMEV 133
+ F + + DN K N + AF+L+DL+ D+KIS +EL++V
Sbjct: 79 NFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDEKISRDELLQV 138
Query: 134 LRKM-GEKYS---LDSCR-KMIRGVDADGDGLIDMDEFMTMMTR 172
LR M G S L S + I+ D DGD I EF+ ++ +
Sbjct: 139 LRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEK 182
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 27 PRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVL-GKGISKAEMA----KSFRFID 81
P SRSN ++ F +D +KD KIS+DE L ++ G IS ++ ++ + D
Sbjct: 107 PLNSRSN--KLHFAFRLYDLDKDEKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEAD 164
Query: 82 TDKDGYIDFKEFIEMM 97
D D I F EF++++
Sbjct: 165 QDGDSAISFTEFVKVL 180
>pdb|2K7B|A Chain A, Nmr Structure Of Mg2+-Bound Cabp1 N-Domain
Length = 76
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 41/64 (64%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
++E+R+ F +FD +KDG I+ + + + +G ++ E+ + + I+ + G++DF +F
Sbjct: 9 IEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDF 68
Query: 94 IEMM 97
+E+M
Sbjct: 69 VELM 72
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 72 EMAKSFRFIDTDKDGYIDFKEFIEMMHDMG 101
E+ ++FR D DKDGYI+ ++ M MG
Sbjct: 11 ELREAFREFDKDKDGYINCRDLGNCMRTMG 40
>pdb|1NYA|A Chain A, Nmr Solution Structure Of Calerythrin, An Ef-hand Calcium-
Binding Protein
Length = 176
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 45 DTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNR 104
D N DG+I+ DE+ + L+ LG +SKAE A++F +DT+ +G + E + + D R
Sbjct: 112 DKNADGQINADEFAAWLTALG--MSKAEAAEAFNQVDTNGNGELSLDELLTAVRDFHFGR 169
Query: 105 V 105
+
Sbjct: 170 L 170
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 24/156 (15%)
Query: 37 MRQVFDKFDTNKDGKIS----QDEYNSALSVLGKGISKAEM-------AKSFRFI----D 81
+++ FD++D + +G + + E GK AE+ F ++
Sbjct: 9 LKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAG 68
Query: 82 TDKDGYIDFKEFIEMMHDM----GD---NRVKKNDIQGAFQLFDLNGDKKISAEELMEVL 134
DG + ++FI + ++ G+ NRV ++G + D N D +I+A+E L
Sbjct: 69 VGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWL 128
Query: 135 RKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
+G S + VD +G+G + +DE +T +
Sbjct: 129 TALG--MSKAEAAEAFNQVDTNGNGELSLDELLTAV 162
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 80 IDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLR 135
D + DG I+ EF + +G + K + AF D NG+ ++S +EL+ +R
Sbjct: 111 CDKNADGQINADEFAAWLTALG---MSKAEAAEAFNQVDTNGNGELSLDELLTAVR 163
>pdb|2CT9|A Chain A, The Crystal Structure Of Calcineurin B Homologous Proein 1
(Chp1)
pdb|2CT9|B Chain B, The Crystal Structure Of Calcineurin B Homologous Proein 1
(Chp1)
Length = 208
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 26/164 (15%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNS----ALSVLGKGISKAEMAKSFRFIDTDKD 85
S S + + F D ++G +S++++ A++ LG I A ++ D+
Sbjct: 24 SHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFSEG-----EDQV 78
Query: 86 GYIDFKEFIEMMHDMGDNRVKK------------NDIQGAFQLFDLNGDKKISAEELMEV 133
+ F + + DN K N + AF+L+DL+ D KIS +EL++V
Sbjct: 79 NFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQV 138
Query: 134 LRKM-GEKYS---LDSCR-KMIRGVDADGDGLIDMDEFMTMMTR 172
LR M G S L S + I+ D DGD I EF+ ++ +
Sbjct: 139 LRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEK 182
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 23 NPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVL-GKGISKAEMA----KSF 77
N P SRSN ++ F +D +KD KIS+DE L ++ G IS ++ ++
Sbjct: 103 NGPEPLNSRSN--KLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTI 160
Query: 78 RFIDTDKDGYIDFKEFIEMM 97
+ D D D I F EF++++
Sbjct: 161 QEADQDGDSAISFTEFVKVL 180
>pdb|2GGZ|A Chain A, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
pdb|2GGZ|B Chain B, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
Length = 211
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 31/139 (22%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
+ + QV++ FDTNKDG + E+ +A++++ + + ++ F+ D D +G ID E +
Sbjct: 57 KHIDQVYNTFDTNKDGFVDFLEFIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKNELL 116
Query: 95 EMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVD 154
+M A Q LNG + +S EE + ++ +D
Sbjct: 117 DMFM--------------AVQA--LNGQQTLSPEEFINLV---------------FHKID 145
Query: 155 ADGDGLIDMDEFMTMMTRN 173
+ DG + ++EF+ M ++
Sbjct: 146 INNDGELTLEEFINGMAKD 164
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 1/105 (0%)
Query: 66 KGISKAEMAKSFR-FIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKK 124
K + E +R F+ G EF ++ G N+ I + FD N D
Sbjct: 14 KAVPTQETHVWYRTFMMEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGF 73
Query: 125 ISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTM 169
+ E + + + ++ + + DADG+G ID +E + M
Sbjct: 74 VDFLEFIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKNELLDM 118
>pdb|2JUL|A Chain A, Nmr Structure Of Dream
Length = 256
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 13/103 (12%)
Query: 77 FRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRK 136
F D D +G I F++F+ + + V + ++ AF L+D+N D I+ EE++ +++
Sbjct: 135 FNAFDADGNGAIHFEDFVVGLSILLRGTVHEK-LKWAFNLYDINKDGCITKEEMLAIMKS 193
Query: 137 ----MG--------EKYSLDSCRKMIRGVDADGDGLIDMDEFM 167
MG E L+ + + +D + DG++ +DEF+
Sbjct: 194 IYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTIDEFL 236
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 40 VFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHD 99
+F+ FD + +G I +++ LS+L +G ++ +F D +KDG I +E + +M
Sbjct: 134 LFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKS 193
Query: 100 MGDNRVKKN-----------DIQGAFQLFDLNGDKKISAEELMEVLRK 136
+ D + ++ FQ D N D ++ +E +E +K
Sbjct: 194 IYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTIDEFLETCQK 241
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 20/101 (19%)
Query: 31 RSNVQE-MRQVFDKFDTNKDGKISQDEYNSAL------------SVLGKGISKAEMAKSF 77
R V E ++ F+ +D NKDG I+++E + + +L + + + F
Sbjct: 160 RGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFF 219
Query: 78 RFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFD 118
+ +D ++DG + EF+E K +I + QLF+
Sbjct: 220 QKMDRNQDGVVTIDEFLETCQ-------KDENIMNSMQLFE 253
>pdb|2MYS|B Chain B, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
pdb|1I84|U Chain U, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|Z Chain Z, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 166
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 5/142 (3%)
Query: 32 SNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGK-GISKAEMAKSFRFIDTDKDGYIDF 90
+ +++ ++ F D N DG I +D+ + +G+ + E+ + + G I+F
Sbjct: 22 TEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIK----EASGPINF 77
Query: 91 KEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMI 150
F+ M + ++ I GAF++ D +G I L E+L G +++ + + M
Sbjct: 78 TVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMW 137
Query: 151 RGVDADGDGLIDMDEFMTMMTR 172
D G +D ++T
Sbjct: 138 AAFPPDVAGNVDYKNICYVITH 159
>pdb|2A4J|A Chain A, Solution Structure Of The C-Terminal Domain (T94-Y172) Of
The Human Centrin 2 In Complex With A 17 Residues
Peptide (P1-Xpc) From Xeroderma Pigmentosum Group C
Protein
pdb|2K2I|A Chain A, Nmr Solution Structure Of The C-Terminal Domain (T94-Y172)
Of The Human Centrin 2 In Complex With A Repeat Sequence
Of Human Sfi1 (R641-T660)
Length = 79
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 107 KNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEF 166
K +I AF+LFD + KIS + L V +++GE + + ++MI D DGDG + EF
Sbjct: 10 KEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEF 69
Query: 167 MTMMTRN 173
+ +M +
Sbjct: 70 LRIMKKT 76
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 69 SKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAE 128
+K E+ K+F+ D D+ G I FK + ++G+N + ++Q D +GD ++S +
Sbjct: 9 TKEEILKAFKLFDDDETGKISFKNLKRVAKELGEN-LTDEELQEMIDEADRDGDGEVSEQ 67
Query: 129 ELMEVLRK 136
E + +++K
Sbjct: 68 EFLRIMKK 75
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 29 ASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYI 88
+ + +E+ + F FD ++ GKIS LG+ ++ E+ + D D DG +
Sbjct: 5 SEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEV 64
Query: 89 DFKEFIEMM 97
+EF+ +M
Sbjct: 65 SEQEFLRIM 73
>pdb|1M8Q|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|T Chain T, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 145
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 62/143 (43%), Gaps = 5/143 (3%)
Query: 31 RSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGK-GISKAEMAKSFRFIDTDKDGYID 89
+ +++ ++ F D N DG I +D+ + +G+ + E+ + + G I+
Sbjct: 3 ETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIK----EASGPIN 58
Query: 90 FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149
F F+ M + ++ I GAF++ D +G I L E+L G +++ + + M
Sbjct: 59 FTVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNM 118
Query: 150 IRGVDADGDGLIDMDEFMTMMTR 172
D G +D ++T
Sbjct: 119 WAAFPPDVAGNVDYKNICYVITH 141
>pdb|3I5G|B Chain B, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|B Chain B, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|B Chain B, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|B Chain B, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 153
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Query: 24 PSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTD 83
P + S+ +QE+++ F D ++DG I ++ S LG+ E+ + +
Sbjct: 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLK----E 60
Query: 84 KDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSL 143
G ++F F+ + + ++ ++ AF +FD +G I + L ++L MG+ +S
Sbjct: 61 CPGQLNFTAFLTLFGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSK 120
Query: 144 DSCRKMIR 151
+ + + +
Sbjct: 121 EEIKNVWK 128
>pdb|2EHB|A Chain A, The Structure Of The C-Terminal Domain Of The Protein
Kinase Atsos2 Bound To The Calcium Sensor Atsos3
Length = 207
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 11/159 (6%)
Query: 25 SVPRASRSNVQEMRQVFDKFDTN--KDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDT 82
SV + V+ + ++F K ++ DG I ++E+ AL + + F D
Sbjct: 27 SVTPFTVEEVEALYELFKKLSSSIIDDGLIHKEEFQLAL-FRNRNRRNLFADRIFDVFDV 85
Query: 83 DKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYS 142
++G I+F EF+ + + ++ AF+L+DL I EEL E++ + +
Sbjct: 86 KRNGVIEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESE 145
Query: 143 LDSCRKMIRG------VDAD--GDGLIDMDEFMTMMTRN 173
L MI V AD DG ID+DE+ ++ N
Sbjct: 146 LVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKDFVSLN 184
>pdb|1V1F|A Chain A, Structure Of The Arabidopsis Thaliana Sos3 Complexed With
Calcium(Ii) And Manganese(Ii) Ions
pdb|1V1G|A Chain A, Structure Of The Arabidopsis Thaliana Sos3 Complexed With
Calcium(Ii) Ion
Length = 222
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 11/159 (6%)
Query: 25 SVPRASRSNVQEMRQVFDKFDTN--KDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDT 82
SV + V+ + ++F K ++ DG I ++E+ AL + + F D
Sbjct: 27 SVTPFTVEEVEALYELFKKLSSSIIDDGLIHKEEFQLAL-FRNRNRRNLFADRIFDVFDV 85
Query: 83 DKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYS 142
++G I+F EF+ + + ++ AF+L+DL I EEL E++ + +
Sbjct: 86 KRNGVIEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESE 145
Query: 143 LDSCRKMIRG------VDAD--GDGLIDMDEFMTMMTRN 173
L MI V AD DG ID+DE+ ++ N
Sbjct: 146 LVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKDFVSLN 184
>pdb|1QX2|A Chain A, X-Ray Structure Of Calcium-Loaded Calbindomodulin (A
Calbindin D9k Re- Engineered To Undergo A Conformational
Opening) At 1.44 A Resolution
pdb|1QX2|B Chain B, X-Ray Structure Of Calcium-Loaded Calbindomodulin (A
Calbindin D9k Re- Engineered To Undergo A Conformational
Opening) At 1.44 A Resolution
Length = 76
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 109 DIQGAFQLFDL-NGD-KKISAEELMEVLRKMGEKY--SLDSCRKMIRGVDADGDGLIDMD 164
+I+GAF++F GD +IS EEL V++ +G + + +MI VD +GDG + +
Sbjct: 6 EIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFE 65
Query: 165 EFMTMMTR 172
EF+ MM +
Sbjct: 66 EFLVMMKK 73
>pdb|3CTN|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 30
Structures
Length = 76
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 114 FQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
F++FD N D I EEL +L+ GE + D ++++ D + DG ID DEF+ M
Sbjct: 16 FRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 72
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
+E+ +F FD N DG I +E L G+ I++ ++ + + D + DG ID+ EF+
Sbjct: 10 EELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFL 69
Query: 95 EMM 97
E M
Sbjct: 70 EFM 72
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 66 KGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKI 125
KG ++ E++ FR D + DGYID +E M+ G+ + ++DI+ + D N D +I
Sbjct: 5 KGKTEEELSDLFRMFDKNADGYIDLEELKIMLQATGET-ITEDDIEELMKDGDKNNDGRI 63
Query: 126 SAEELMEVLR 135
+E +E ++
Sbjct: 64 DYDEFLEFMK 73
>pdb|2SCP|A Chain A, Structure Of A Sarcoplasmic Calcium-Binding Protein From
Nereis Diversicolor Refined At 2.0 Angstroms Resolution
pdb|2SCP|B Chain B, Structure Of A Sarcoplasmic Calcium-Binding Protein From
Nereis Diversicolor Refined At 2.0 Angstroms Resolution
pdb|1Q80|A Chain A, Solution Structure And Dynamics Of Nereis Sarcoplasmic
Calcium Binding Protein
Length = 174
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 17/149 (11%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGIS-KAEMAKSF---------RFIDTD 83
VQ+M+ F++ D +KDG I++ ++ S K KAE AK F+
Sbjct: 5 VQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAV 64
Query: 84 KDGY-IDFKEFIEMMHDMGDNRVKKNDIQGAFQLF----DLNGDKKISAEELMEVLRKMG 138
G ID FI M +M N K+ ++G LF D N D IS +E +G
Sbjct: 65 AGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLG 124
Query: 139 EKYSLDSCRKMIRGVDADGDGLIDMDEFM 167
++ +D + DGL+ ++EF+
Sbjct: 125 LDKTMAPAS--FDAIDTNNDGLLSLEEFV 151
>pdb|1IH0|A Chain A, Structure Of The C-Domain Of Human Cardiac Troponin C In
Complex With Ca2+ Sensitizer Emd 57033
Length = 71
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 114 FQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
F++FD N D I EEL +L+ GE + D ++++ D + DG ID DEF+ M
Sbjct: 11 FRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 67
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
+E+ +F FD N DG I +E L G+ I++ ++ + + D + DG ID+ EF+
Sbjct: 5 EELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFL 64
Query: 95 EMM 97
E M
Sbjct: 65 EFM 67
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 69 SKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAE 128
S+ E++ FR D + DGYID +E M+ G+ + ++DI+ + D N D +I +
Sbjct: 3 SEEELSDLFRMFDKNADGYIDLEELKIMLQATGET-ITEDDIEELMKDGDKNNDGRIDYD 61
Query: 129 ELMEVLR 135
E +E ++
Sbjct: 62 EFLEFMK 68
>pdb|2KDH|A Chain A, The Solution Structure Of Human Cardiac Troponin C In
Complex With The Green Tea Polyphenol; (-)-
Epigallocatechin-3-Gallate
pdb|2L98|A Chain A, Structure Of Trans-Resveratrol In Complex With The
Cardiac Regulatory Protein Troponin C
Length = 72
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
+E+ +F FD N DG I DE L G+ I++ ++ + + D + DG ID+ EF+
Sbjct: 6 EELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFL 65
Query: 95 EMM 97
E M
Sbjct: 66 EFM 68
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 114 FQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
F++FD N D I +EL +L+ GE + D ++++ D + DG ID DEF+ M
Sbjct: 12 FRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 68
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 67 GISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKIS 126
G S+ E++ FR D + DGYID E M+ G+ + ++DI+ + D N D +I
Sbjct: 2 GKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGET-ITEDDIEELMKDGDKNNDGRID 60
Query: 127 AEELMEVLR 135
+E +E ++
Sbjct: 61 YDEFLEFMK 69
>pdb|1M46|A Chain A, Crystal Structure Of Mlc1p Bound To Iq4 Of Myo2p, A Class
V Myosin
pdb|1M45|A Chain A, Crystal Structure Of Mlc1p Bound To Iq2 Of Myo2p, A Class
V Myosin
pdb|1N2D|A Chain A, Ternary Complex Of Mlc1p Bound To Iq2 And Iq3 Of Myo2p, A
Class V Myosin
pdb|1N2D|B Chain B, Ternary Complex Of Mlc1p Bound To Iq2 And Iq3 Of Myo2p, A
Class V Myosin
Length = 148
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 6 SPQLNQPPKESMPKERQNPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLG 65
S L+Q E++ + +A + + QVFDK T GK+S + L+ LG
Sbjct: 57 SLTLDQITGLIEVNEKELDATTKAKTEDFVKAFQVFDKEST---GKVSVGDLRYMLTGLG 113
Query: 66 KGISKAEMAKSFRFIDTDKDGYIDFKEFIE 95
+ ++ AE+ + + ++ D +G ID+K+FIE
Sbjct: 114 EKLTDAEVDELLKGVEVDSNGEIDYKKFIE 143
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 103 NRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLID 162
+ K D AFQ+FD K+S +L +L +GEK + ++++GV+ D +G ID
Sbjct: 78 TKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEID 137
Query: 163 MDEFMTMMTR 172
+F+ + R
Sbjct: 138 YKKFIEDVLR 147
>pdb|1OZS|A Chain A, C-Domain Of Human Cardiac Troponin C In Complex With The
Inhibitory Region Of Human Cardiac Troponin I
Length = 73
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 114 FQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
F++FD N D I EEL +L+ GE + D ++++ D + DG ID DEF+ M
Sbjct: 13 FRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 69
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 66 KGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKI 125
KG S+ E++ FR D + DGYID +E M+ G+ + ++DI+ + D N D +I
Sbjct: 2 KGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGET-ITEDDIEELMKDGDKNNDGRI 60
Query: 126 SAEELMEVLR 135
+E +E ++
Sbjct: 61 DYDEFLEFMK 70
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
+E+ +F FD N DG I +E L G+ I++ ++ + + D + DG ID+ EF+
Sbjct: 7 EELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFL 66
Query: 95 EMM 97
E M
Sbjct: 67 EFM 69
>pdb|1FI5|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac Troponin
C Bound To The N Terminal Domain Of Cardiac Troponin I.
pdb|1SBJ|A Chain A, Nmr Structure Of The Mg2+-Loaded C Terminal Domain Of
Cardiac Troponin C Bound To The N Terminal Domain Of
Cardiac Troponin I
pdb|1SCV|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac Troponin
C Bound To The N Terminal Domain Of Cardiac Troponin I
Length = 81
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 114 FQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
F++FD N D I EEL +L+ GE + D ++++ D + DG ID DEF+ M
Sbjct: 21 FRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 77
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
+E+ +F FD N DG I +E L G+ I++ ++ + + D + DG ID+ EF+
Sbjct: 15 EELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFL 74
Query: 95 EMM 97
E M
Sbjct: 75 EFM 77
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 66 KGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKI 125
KG ++ E++ FR D + DGYID +E M+ G+ + ++DI+ + D N D +I
Sbjct: 10 KGKTEEELSDLFRMFDKNADGYIDLEELKIMLQATGET-ITEDDIEELMKDGDKNNDGRI 68
Query: 126 SAEELMEVLR 135
+E +E ++
Sbjct: 69 DYDEFLEFMK 78
>pdb|2FCE|A Chain A, Solution Structure Of C-Lobe Myosin Light Chain From
Saccharomices Cerevisiae
Length = 70
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%)
Query: 104 RVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDM 163
+ K D AFQ+FD K+S +L +L +GEK + ++++GV+ D +G ID
Sbjct: 1 KAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDY 60
Query: 164 DEFMTMMTR 172
+F+ + R
Sbjct: 61 KKFIEDVLR 69
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 38/65 (58%)
Query: 31 RSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDF 90
++ ++ + F FD GK+S + L+ LG+ ++ AE+ + + ++ D +G ID+
Sbjct: 1 KAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDY 60
Query: 91 KEFIE 95
K+FIE
Sbjct: 61 KKFIE 65
>pdb|2KGR|A Chain A, Solution Structure Of Protein Itsn1 From Homo Sapiens.
Northeast Structural Genomics Consortium Target Hr5524a
Length = 111
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 25 SVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDK 84
+VP++SR + RQ+F+ D G ++ + + L + + +A++A + D D+
Sbjct: 7 AVPQSSR---LKYRQLFNSHDKTMSGHLTGPQARTIL--MQSSLPQAQLASIWNLSDIDQ 61
Query: 85 DGYIDFKEFIEMMH 98
DG + +EFI MH
Sbjct: 62 DGKLTAEEFILAMH 75
>pdb|3E3R|A Chain A, Crystal Structure And Biochemical Characterization Of
Recombinant Human Calcyphosine Delineates A Novel
Ef-hand-containing Protein Family
pdb|3E3R|B Chain B, Crystal Structure And Biochemical Characterization Of
Recombinant Human Calcyphosine Delineates A Novel
Ef-hand-containing Protein Family
Length = 204
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 9/143 (6%)
Query: 32 SNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFK 91
S +Q + + F + D + + DE+ L+ LG + +AE R D + G +D +
Sbjct: 34 SGIQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLE 93
Query: 92 EFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLR-------KMGEKYSLD 144
EF+ + ++ ++ I AF D +GD ++ ++L V + GE +
Sbjct: 94 EFLRALRPP-MSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDE 152
Query: 145 SCRKMIRGVD-ADGDGLIDMDEF 166
R+ + D ++ DG + + EF
Sbjct: 153 VLRRFLDNFDSSEKDGQVTLAEF 175
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 110 IQGAFQLF---DLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEF 166
IQG + F D +G + + A+E + L K+G + R D +G G +D++EF
Sbjct: 36 IQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEF 95
Query: 167 MTMM 170
+ +
Sbjct: 96 LRAL 99
>pdb|1S6J|A Chain A, N-Terminal Region Of The Ca2+-Saturated Calcium
Regulatory Domain (Cld) From Soybean Calcium-Dependent
Protein Kinase- Alpha (Cdpk)
Length = 87
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 26 VPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKD 85
R S + ++++F DT+ G I+ DE L +G + ++E+ D DK
Sbjct: 14 AERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKS 73
Query: 86 GYIDFKEFI 94
G ID+ EFI
Sbjct: 74 GTIDYGEFI 82
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 104 RVKKNDIQGA---FQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGL 160
R+ + +I G F++ D + I+ +EL + L+++G + + ++ D D G
Sbjct: 16 RLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGT 75
Query: 161 IDMDEFM 167
ID EF+
Sbjct: 76 IDYGEFI 82
>pdb|1OQP|A Chain A, Structure Of The Ca2+C-Terminal Domain Of Caltractin In
Complex With The Cdc31p-Binding Domain From Kar1p
Length = 77
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 104 RVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDM 163
R + +I AF+LFD + I+ ++L V +++GE + + ++MI D + D ID
Sbjct: 5 RDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDE 64
Query: 164 DEFMTMMTR 172
DEF+ +M +
Sbjct: 65 DEFIRIMKK 73
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 65 GKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKK 124
G+ S+ E+ K+FR D D G I K+ + ++G+N + + ++Q D N D +
Sbjct: 3 GERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGEN-LTEEELQEMIAEADRNDDNE 61
Query: 125 ISAEELMEVLRK 136
I +E + +++K
Sbjct: 62 IDEDEFIRIMKK 73
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 29 ASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYI 88
R + +E+ + F FD + G I+ + LG+ +++ E+ + D + D I
Sbjct: 3 GERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEI 62
Query: 89 DFKEFIEMM 97
D EFI +M
Sbjct: 63 DEDEFIRIM 71
>pdb|2PMY|A Chain A, Ef-Hand Domain Of Human Rasef
pdb|2PMY|B Chain B, Ef-Hand Domain Of Human Rasef
Length = 91
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
+ +R VF D N+ G++ ++E+ + + L + A+ F+ +D D+DG I F+EF
Sbjct: 26 LARLRSVFAACDANRSGRLEREEFRALCTELR--VRPADAEAVFQRLDADRDGAITFQEF 83
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 65 GKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKK 124
G G A + F D ++ G ++ +EF + ++ RV+ D + FQ D + D
Sbjct: 21 GDGEELARLRSVFAACDANRSGRLEREEFRALCTEL---RVRPADAEAVFQRLDADRDGA 77
Query: 125 ISAEEL 130
I+ +E
Sbjct: 78 ITFQEF 83
>pdb|2F8P|A Chain A, Crystal Structure Of Obelin Following Ca2+ Triggered
Bioluminescence Suggests Neutral Coelenteramide As The
Primary Excited State
Length = 195
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 24/159 (15%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALS--VLGKGISKAEMAKS--------FRFIDTD 83
++ + +FD D N +GKI+ DE S S + K + E K FR +
Sbjct: 19 IKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGME 78
Query: 84 KDGYIDFKEFIEMMHDMGDNRVKK---NDIQ-------GAFQLFDLNGDKKISAEELMEV 133
I F +F++ + + +KK N+ F +FD +G I+ +E
Sbjct: 79 YGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAY 138
Query: 134 LRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
+ G S + C R D D G +D+DE MTR
Sbjct: 139 GKISGISPSQEDCEATFRHCDLDNSGDLDVDE----MTR 173
>pdb|1EL4|A Chain A, Structure Of The Calcium-Regulated Photoprotein Obelin
Determined By Sulfur Sas
Length = 195
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 24/159 (15%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALS--VLGKGISKAEMAKS--------FRFIDTD 83
++ + +FD D N +GKI+ DE S S + K + E K FR +
Sbjct: 19 IKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGME 78
Query: 84 KDGYIDFKEFIEMMHDMGDNRVKK---NDIQ-------GAFQLFDLNGDKKISAEELMEV 133
I F +F++ + + +KK N+ F +FD +G I+ +E
Sbjct: 79 YGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAY 138
Query: 134 LRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
+ G S + C R D D G +D+DE MTR
Sbjct: 139 GKISGISPSQEDCEATFRHCDLDNSGDLDVDE----MTR 173
>pdb|1JF2|A Chain A, Crystal Structure Of W92f Obelin Mutant From Obelia
Longissima At 1.72 Angstrom Resolution
pdb|1S36|A Chain A, Crystal Structure Of A Ca2+-Discharged Photoprotein:
Implications For The Mechanisms Of The Calcium Trigger
And The Bioluminescence
Length = 195
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 24/159 (15%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALS--VLGKGISKAEMAKS--------FRFIDTD 83
++ + +FD D N +GKI+ DE S S + K + E K FR +
Sbjct: 19 IKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGME 78
Query: 84 KDGYIDFKEFIEMMHDMGDNRVKK---NDIQ-------GAFQLFDLNGDKKISAEELMEV 133
I F +F++ + + +KK N+ F +FD +G I+ +E
Sbjct: 79 YGKEIAFPQFLDGFKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAY 138
Query: 134 LRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
+ G S + C R D D G +D+DE MTR
Sbjct: 139 GKISGISPSQEDCEATFRHCDLDNSGDLDVDE----MTR 173
>pdb|1QV0|A Chain A, Atomic Resolution Structure Of Obelin From Obelia
Longissima
pdb|1QV1|A Chain A, Atomic Resolution Structure Of Obelin From Obelia
Longissima
pdb|1SL9|A Chain A, Obelin From Obelia Longissima
Length = 195
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 24/159 (15%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALS--VLGKGISKAEMAKS--------FRFIDTD 83
++ + +FD D N +GKI+ DE S S + K + E K FR +
Sbjct: 19 IKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGME 78
Query: 84 KDGYIDFKEFIEMMHDMGDNRVKK---NDIQ-------GAFQLFDLNGDKKISAEELMEV 133
I F +F++ + + +KK N+ F +FD +G I+ +E
Sbjct: 79 YGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAY 138
Query: 134 LRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
+ G S + C R D D G +D+DE MTR
Sbjct: 139 GKISGISPSQEDCEATFRHCDLDNAGDLDVDE----MTR 173
>pdb|1KFX|L Chain L, Crystal Structure Of Human M-Calpain Form I
pdb|1KFU|L Chain L, Crystal Structure Of Human M-Calpain Form Ii
Length = 699
Score = 38.1 bits (87), Expect = 0.003, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 11/89 (12%)
Query: 95 EMMHDMGDNRVKKNDIQ-GAFQLF-DLNG-DKKISAEELMEVLRKMGEK--------YSL 143
E+ ++ + + ++DI G +LF L G D +ISA EL +LR++ K +S+
Sbjct: 514 EIEANLEEFDISEDDIDDGVRRLFAQLAGEDAEISAFELQTILRRVLAKRQDIKSDGFSI 573
Query: 144 DSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
++C+ M+ +D+DG G + + EF + T+
Sbjct: 574 ETCKIMVDMLDSDGSGKLGLKEFYILWTK 602
>pdb|2OS8|C Chain C, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|C Chain C, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 157
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 10/149 (6%)
Query: 26 VPRASRSNVQEMRQVFDKFD--TNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTD 83
+P+ S+ + ++++VF+ FD +DG + + LG ++ F T
Sbjct: 1 MPKLSQDEIDDLKEVFELFDFWDGRDGAVDAFKIGDVCRCLGINPRNEDV---FAVGGTH 57
Query: 84 KDG--YIDFKEFIEMMHDMGD-NRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEK 140
K G + F+EF+ + D + D AF+ FD G IS EL VL +GE+
Sbjct: 58 KMGEKSLPFEEFLPAYEGLMDCEQGTYADYMEAFKTFDREGQGFISGAELRHVLSGLGER 117
Query: 141 YSLDSCRKMIRGVDA--DGDGLIDMDEFM 167
S + ++I D D +G + +EF+
Sbjct: 118 LSDEEVDEIINLTDLQEDLEGNVKYEEFV 146
>pdb|3PN7|C Chain C, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3PN7|F Chain F, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3TS5|C Chain C, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TS5|F Chain F, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TUY|C Chain C, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
pdb|3TUY|F Chain F, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
Length = 156
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 10/148 (6%)
Query: 27 PRASRSNVQEMRQVFDKFD--TNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDK 84
P+ S+ + ++++VF+ FD +DG + + LG ++ F T K
Sbjct: 1 PKLSQDEIDDLKEVFELFDFWDGRDGAVDAFKIGDVCRCLGINPRNEDV---FAVGGTHK 57
Query: 85 DG--YIDFKEFIEMMHDMGD-NRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKY 141
G + F+EF+ + D + D AF+ FD G IS EL VL +GE+
Sbjct: 58 MGEKSLPFEEFLPAYEGLMDCEQGTYADYMEAFKTFDREGQGFISGAELRHVLSGLGERL 117
Query: 142 SLDSCRKMIRGVDA--DGDGLIDMDEFM 167
S + ++I D D +G + +EF+
Sbjct: 118 SDEEVDEIINLTDLQEDLEGNVKYEEFV 145
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain
pdb|1QXP|B Chain B, Crystal Structure Of A Mu-Like Calpain
Length = 900
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 122 DKKISAEELMEVLRKMGEK--------YSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
D +IS +EL +L ++ K +SL+SCR M+ +D DG+G + + EF + R
Sbjct: 547 DMEISVKELQTILNRIISKHKDLRTNGFSLESCRSMVNLMDRDGNGKLGLVEFNILWNR 605
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 9/62 (14%)
Query: 122 DKKISAEELMEVLRKMGEK--------YSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRN 173
D ++SA ELM +L K+ + + +D+CR M+ +D+D G + +EF + N
Sbjct: 744 DMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWN-N 802
Query: 174 VK 175
+K
Sbjct: 803 IK 804
>pdb|1SL7|A Chain A, Crystal Structure Of Calcium-Loaded Apo-Obelin From Obelia
Longissima
Length = 195
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 24/159 (15%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALS--VLGKGISKAEMAKS--------FRFIDTD 83
++ + +FD D N +GKI+ DE S S + K + E K FR +
Sbjct: 19 IKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGME 78
Query: 84 KDGYIDFKEFIEMMHDMGDNRVKK---NDIQ-------GAFQLFDLNGDKKISAEELMEV 133
I F +F++ + + +KK N+ F +FD +G I+ +E
Sbjct: 79 YGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAY 138
Query: 134 LRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
+ G S + C R D D G +D+DE MTR
Sbjct: 139 GKISGISPSQEDCEATFRHCDLDDSGDLDVDE----MTR 173
>pdb|1UHN|A Chain A, The Crystal Structure Of The Calcium Binding Protein
Atcbl2 From Arabidopsis Thaliana
Length = 189
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 11/154 (7%)
Query: 30 SRSNVQEMRQVFDKFDTN--KDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGY 87
S S ++ + ++F K + DG I+++E+ AL K S + F DT +G
Sbjct: 12 SVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLF-ADRVFDLFDTKHNGI 70
Query: 88 IDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELME-VLRKMGE------- 139
+ F+EF + N + I +FQL+DL I +E+ + V+ + E
Sbjct: 71 LGFEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKD 130
Query: 140 KYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRN 173
D K D DG ID +E+ +++ R+
Sbjct: 131 TVIEDIIDKTFEEADTKHDGKIDKEEWRSLVLRH 164
>pdb|3CS1|A Chain A, Flagellar Calcium-binding Protein (fcabp) From T. Cruzi
Length = 219
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 20 ERQNPSVPRASRSNVQEMR-QVFDKFDTNKDGKISQDE-YNSALSVLG--------KGIS 69
ER ++PR + ++ R ++F KFD N+ GK+ DE Y+ L VL + I+
Sbjct: 32 ERIRQAIPREKTAEAKQRRIELFKKFDKNETGKLXYDEVYSGCLEVLKLDEFTSRVRDIT 91
Query: 70 KAEMAKSFRFIDT--DKDGYIDFKEFIEM------MHDMGDNRVKKNDIQGAFQLFDLNG 121
K KS R + + + G DF EF+E ++D + V ++I D +G
Sbjct: 92 KRAFDKS-RTLGSKLENKGSEDFVEFLEFRLMLCYIYDFFELTVMFDEI-------DASG 143
Query: 122 DKKISAEELMEVLRKMGEKYS--LDSCRKMIRGVDADGDGLIDMDEFMTMMT 171
+ + EE + K+ E + ++ + + +D +G G + DEF +
Sbjct: 144 NMLVDEEEFKRAVPKL-EAWGAKVEDPAALFKELDKNGTGSVTFDEFAAWAS 194
>pdb|1U5I|A Chain A, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10
Thr
Length = 700
Score = 37.4 bits (85), Expect = 0.005, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 8/59 (13%)
Query: 122 DKKISAEELMEVLRKMGEK--------YSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
D +ISA EL +LR++ K +S+++C+ M+ +D DG G + + EF + T+
Sbjct: 545 DAEISAFELQTILRRVLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTK 603
>pdb|3DF0|A Chain A, Calcium-Dependent Complex Between M-Calpain And
Calpastatin
pdb|3BOW|A Chain A, Structure Of M-Calpain In Complex With Calpastatin
Length = 714
Score = 37.4 bits (85), Expect = 0.005, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 8/59 (13%)
Query: 122 DKKISAEELMEVLRKMGEK--------YSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
D +ISA EL +LR++ K +S+++C+ M+ +D DG G + + EF + T+
Sbjct: 545 DAEISAFELQTILRRVLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTK 603
>pdb|1DF0|A Chain A, Crystal Structure Of M-Calpain
Length = 700
Score = 37.4 bits (85), Expect = 0.005, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 8/59 (13%)
Query: 122 DKKISAEELMEVLRKMGEK--------YSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
D +ISA EL +LR++ K +S+++C+ M+ +D DG G + + EF + T+
Sbjct: 545 DAEISAFELQTILRRVLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTK 603
>pdb|2ZFD|A Chain A, The Crystal Structure Of Plant Specific Calcium Binding
Protein Atcbl2 In Complex With The Regulatory Domain Of
Atcipk14
Length = 226
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 11/154 (7%)
Query: 30 SRSNVQEMRQVFDKFDTN--KDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGY 87
S S ++ + ++F K + DG I+++E+ AL K S + F DT +G
Sbjct: 43 SVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFA-DRVFDLFDTKHNGI 101
Query: 88 IDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELME-VLRKMGEK------ 140
+ F+EF + N + I +FQL+DL I +E+ + V+ + E
Sbjct: 102 LGFEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKD 161
Query: 141 -YSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRN 173
D K D DG ID +E+ +++ R+
Sbjct: 162 TVIEDIIDKTFEEADTKHDGKIDKEEWRSLVLRH 195
>pdb|1JF0|A Chain A, The Crystal Structure Of Obelin From Obelia Geniculata At
1.82 A Resolution
Length = 195
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 24/159 (15%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALS---VLGKGISKAEMAKS-------FRFIDTD 83
++ + +FD D N +G+I+ DE S S G + A+ + FR +
Sbjct: 19 IKRHKFMFDYLDINGNGQITLDEIVSKASDDICKNLGATPAQTQRHQDCVEAFFRGCGLE 78
Query: 84 KDGYIDFKEFIEMMHDMGDNRVKK---NDIQ-------GAFQLFDLNGDKKISAEELMEV 133
F EF+E ++ + + K N+ F +FD +G I+ +E
Sbjct: 79 YGKETKFPEFLEGWKNLANADLAKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAY 138
Query: 134 LRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
R G S + C K + D D G +D+DE MTR
Sbjct: 139 GRISGISPSEEDCEKTFQHCDLDNSGELDVDE----MTR 173
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 19 KERQNPSVPRASRSNVQEMRQ----VFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMA 74
K N + + +R+ +R+ VFD FD + G I+ DE+ + + G S+ +
Sbjct: 93 KNLANADLAKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGRISGISPSEEDCE 152
Query: 75 KSFRFIDTDKDGYIDFKE 92
K+F+ D D G +D E
Sbjct: 153 KTFQHCDLDNSGELDVDE 170
>pdb|2I18|A Chain A, The Refined Structure Of C-Terminal Domain Of An Ef-Hand
Calcium Binding Protein From Entamoeba Histolytica
Length = 64
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 114 FQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFM 167
++L D++GD K++ EE+ +K G ++ + + DA+GDG I ++EF+
Sbjct: 11 YKLMDVDGDGKLTKEEVTSFFKKHG----IEKVAEQVMKADANGDGYITLEEFL 60
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 37 MRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEM 96
++ ++ D + DGK++++E S GI K +A+ D + DGYI +EF+E
Sbjct: 7 LKVLYKLMDVDGDGKLTKEEVTSFFK--KHGIEK--VAEQVMKADANGDGYITLEEFLEF 62
>pdb|1KK8|C Chain C, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 154
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 8/133 (6%)
Query: 27 PRASRSNVQEMRQVFDKFD--TNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDK 84
P+ S+ + +++ VF+ FD +DG + + LG ++ F T K
Sbjct: 1 PKLSQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDV---FAVGGTHK 57
Query: 85 DG--YIDFKEFIEMMHDMGDNRVKK-NDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKY 141
G + F+EF+ + D D AF+ FD G IS EL VL +GE+
Sbjct: 58 MGEKSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERL 117
Query: 142 SLDSCRKMIRGVD 154
S + ++I+ D
Sbjct: 118 SDEDVDEIIKLTD 130
>pdb|1TTX|A Chain A, Solution Stucture Of Human Beta Parvalbumin (Oncomodulin)
Refined With A Paramagnetism Based Strategy
Length = 109
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 77 FRFIDTDKDGYIDFKE--FIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVL 134
FRFID D+ GY+D +E F + G + +++ + D +GD KI AEE E++
Sbjct: 48 FRFIDNDQSGYLDEEELKFFLQKFESGARELTESETKSLMAAADNDGDGKIGAEEFQEMV 107
Query: 135 R 135
Sbjct: 108 H 108
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKG---ISKAEMAKSFRFIDTDKDG 86
S+ + +++ VF D ++ G + ++E L G ++++E D D DG
Sbjct: 37 SKMSANQVKDVFRFIDNDQSGYLDEEELKFFLQKFESGARELTESETKSLMAAADNDGDG 96
Query: 87 YIDFKEFIEMMH 98
I +EF EM+H
Sbjct: 97 KIGAEEFQEMVH 108
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 101 GDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM---GEKYSLDSCRKMIRGVDADG 157
G +++ N ++ F+ D + + EEL L+K + + + ++ D DG
Sbjct: 35 GLSKMSANQVKDVFRFIDNDQSGYLDEEELKFFLQKFESGARELTESETKSLMAAADNDG 94
Query: 158 DGLIDMDEFMTMM 170
DG I +EF M+
Sbjct: 95 DGKIGAEEFQEMV 107
>pdb|1WDC|C Chain C, Scallop Myosin Regulatory Domain
pdb|1B7T|Z Chain Z, Myosin Digested By Papain
pdb|1KK7|Z Chain Z, Scallop Myosin In The Near Rigor Conformation
pdb|1L2O|C Chain C, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|C Chain C, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|C Chain C, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
pdb|1QVI|Z Chain Z, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|Z Chain Z, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|C Chain C, Structure Of Nucleotide-free Scallop Myosin S1
pdb|3JVT|C Chain C, Calcium-Bound Scallop Myosin Regulatory Domain (Lever Arm)
With Reconstituted Complete Light Chains
Length = 156
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 8/133 (6%)
Query: 27 PRASRSNVQEMRQVFDKFD--TNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDK 84
P+ S+ + +++ VF+ FD +DG + + LG ++ F T K
Sbjct: 1 PKLSQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDV---FAVGGTHK 57
Query: 85 DG--YIDFKEFIEMMHDMGDNRVKK-NDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKY 141
G + F+EF+ + D D AF+ FD G IS EL VL +GE+
Sbjct: 58 MGEKSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERL 117
Query: 142 SLDSCRKMIRGVD 154
S + ++I+ D
Sbjct: 118 SDEDVDEIIKLTD 130
>pdb|3PAT|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin
pdb|2PAS|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin
pdb|1PVA|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin (alpha Component From Pike
Muscle)
pdb|1PVA|B Chain B, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin (alpha Component From Pike
Muscle)
Length = 110
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 85 DGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM---GEKY 141
+G + K+F ++ G + ND++ F+ D + I EEL VL+ G
Sbjct: 22 EGSFNHKKFFALV---GLKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDL 78
Query: 142 SLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
+ + ++ D DGDG I +DEF T++
Sbjct: 79 TDAETKAFLKAADKDGDGKIGIDEFETLV 107
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 33 NVQEMRQVFDKFDTNKDGKISQDEYNSALSVL---GKGISKAEMAKSFRFIDTDKDGYID 89
+ ++++VF D + G I ++E L G+ ++ AE + D D DG I
Sbjct: 40 SANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIG 99
Query: 90 FKEFIEMMHD 99
EF ++H+
Sbjct: 100 IDEFETLVHE 109
>pdb|2HQ8|A Chain A, Crystal Structure Of Coelenterazine-binding Protein From
Renilla Muelleri In The Ca Loaded Apo Form
pdb|2HQ8|B Chain B, Crystal Structure Of Coelenterazine-binding Protein From
Renilla Muelleri In The Ca Loaded Apo Form
Length = 186
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 40 VFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHD 99
++D DT+KDG +S E+ + L +G ++ + F +D +K+G I EF+ ++D
Sbjct: 107 MYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFLVTVND 166
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 35 QEMRQVFDKFDTNKDGKISQDE--YNSALSVLG-----KGISKAEMAKSFRFIDTDKDGY 87
QE +V D+ +IS +E N+ S+L K ++ + + IDTDKDGY
Sbjct: 59 QEFLRVADQLGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGY 118
Query: 88 IDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELM 131
+ EF + +G + I F D N + +IS +E +
Sbjct: 119 VSLPEFKAFLQAVGPDLTDDKAIT-CFNTLDFNKNGQISRDEFL 161
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 40 VFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSF 77
F+ D NK+G+IS+DE+ ++ G+ + +A +F
Sbjct: 143 CFNTLDFNKNGQISRDEFLVTVNDFLFGLEETALANAF 180
>pdb|2HPS|A Chain A, Crystal Structure Of Coelenterazine-binding Protein From
Renilla Muelleri
Length = 186
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 41 FDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDM 100
+D DT+KDG +S E+ + L +G ++ + F +D +K+G I EF+ ++D
Sbjct: 108 YDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFLVTVNDF 167
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 35 QEMRQVFDKFDTNKDGKISQDE--YNSALSVL-GKGISKAEMAK----SFRFIDTDKDGY 87
QE +V D+ +IS +E N+ S+L KG KA + IDTDKDGY
Sbjct: 59 QEFLRVADQLGLAPGVRISVEEAAVNATDSLLKXKGEEKAXAVIQSLIXYDCIDTDKDGY 118
Query: 88 IDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELM 131
+ EF + +G + I F D N + +IS +E +
Sbjct: 119 VSLPEFKAFLQAVGPDLTDDKAIT-CFNTLDFNKNGQISRDEFL 161
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 40 VFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSF 77
F+ D NK+G+IS+DE+ ++ G+ + +A +F
Sbjct: 143 CFNTLDFNKNGQISRDEFLVTVNDFLFGLEETALANAF 180
>pdb|2EC6|C Chain C, Placopecten Striated Muscle Myosin Ii
Length = 156
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 10/148 (6%)
Query: 27 PRASRSNVQEMRQVFDKFD--TNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDK 84
P+ S+ + +++ VF+ FD +DG + + LG ++ F T K
Sbjct: 1 PKLSQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDV---FAVGGTHK 57
Query: 85 DG--YIDFKEFIEMMHDMGDNRVKK-NDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKY 141
G + F+EF+ + D D AF+ FD G IS EL VL +GE+
Sbjct: 58 MGEKSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLSGLGERL 117
Query: 142 SLDSCRKMIRGVDA--DGDGLIDMDEFM 167
S + ++I D D +G + +EF+
Sbjct: 118 SDEEVDEIINLTDLQEDLEGNVKYEEFV 145
>pdb|3SJS|A Chain A, Crystal Structure Of Ure3-Binding Protein From Entamoeba
Histolytica, (D127a,N129a) Mutant, Native Form
pdb|3SIA|A Chain A, Crystal Structure Of Ure3-Binding Protein, (D127a,N129a)
Mutant, Iodide Phased
Length = 220
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 21/160 (13%)
Query: 18 PKERQNPSVPRASRSNVQEMRQVFDKF---DTNKDGKISQDEYNSALSVLGKGISKAEMA 74
P R P + + + +++ F D ++ G + +E G +S
Sbjct: 31 PSVRNTWWFPLLNTIPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTAL 90
Query: 75 KSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKK---ISAEELM 131
+ R DTD +G+I F EF+ M M + A+ LF +N + + E++
Sbjct: 91 RMMRIFDTDFNGHISFYEFMAMYKFM----------ELAYNLFVMNARARSGTLEPHEIL 140
Query: 132 EVLRKMG----EKYSLDSCRKMIRGVD-ADGDGLIDMDEF 166
L+++G ++ SL R RG+ D + I + F
Sbjct: 141 PALQQLGFYINQRTSLLLHRLFARGMAFCDLNCWIAICAF 180
>pdb|3TZ1|A Chain A, Crystal Structure Of The Ca2+-saturated C-terminal Domain
Of Akazara Scallop Troponin C In Complex With A Troponin
I Fragment
Length = 74
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 109 DIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMT 168
+++ AF++ D I + L +L+ +G++ + D MI D DG G +D +EF
Sbjct: 8 ELKEAFRVLDKEKKGVIKVDVLRWILKSLGDELTEDEIENMIAETDTDGSGTVDYEEFKC 67
Query: 169 MM 170
+M
Sbjct: 68 LM 69
Score = 33.1 bits (74), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFI 94
+E+++ F D K G I D L LG +++ E+ DTD G +D++EF
Sbjct: 7 RELKEAFRVLDKEKKGVIKVDVLRWILKSLGDELTEDEIENMIAETDTDGSGTVDYEEFK 66
Query: 95 EMM 97
+M
Sbjct: 67 CLM 69
>pdb|1DF0|B Chain B, Crystal Structure Of M-Calpain
pdb|1U5I|B Chain B, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10
Thr
pdb|3DF0|B Chain B, Calcium-Dependent Complex Between M-Calpain And
Calpastatin
pdb|3BOW|B Chain B, Structure Of M-Calpain In Complex With Calpastatin
Length = 184
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 9/62 (14%)
Query: 122 DKKISAEELMEVLRKMGEK--------YSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRN 173
D ++SA ELM +L K+ + + +D+CR M+ +D+D G + +EF + N
Sbjct: 28 DMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEF-KYLWNN 86
Query: 174 VK 175
+K
Sbjct: 87 IK 88
>pdb|1KFX|S Chain S, Crystal Structure Of Human M-Calpain Form I
pdb|1KFU|S Chain S, Crystal Structure Of Human M-Calpain Form Ii
Length = 184
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 9/62 (14%)
Query: 122 DKKISAEELMEVLRKMGEK--------YSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRN 173
D ++SA ELM +L K+ + + +D+CR M+ +D+D G + +EF + N
Sbjct: 28 DMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEF-KYLWNN 86
Query: 174 VK 175
+K
Sbjct: 87 IK 88
>pdb|1AJ5|A Chain A, Calpain Domain Vi Apo
pdb|1AJ5|B Chain B, Calpain Domain Vi Apo
Length = 173
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 9/62 (14%)
Query: 122 DKKISAEELMEVLRKMGEK--------YSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRN 173
D ++SA ELM +L K+ + + +D+CR M+ +D+D G + +EF + N
Sbjct: 17 DMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEF-KYLWNN 75
Query: 174 VK 175
+K
Sbjct: 76 IK 77
>pdb|1ALW|A Chain A, Inhibitor And Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALW|B Chain B, Inhibitor And Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALV|A Chain A, Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALV|B Chain B, Calcium Bound Domain Vi Of Porcine Calpain
pdb|1NX0|A Chain A, Structure Of Calpain Domain 6 In Complex With Calpastatin
Dic
pdb|1NX0|B Chain B, Structure Of Calpain Domain 6 In Complex With Calpastatin
Dic
pdb|1NX1|A Chain A, Calpain Domain Vi Complexed With Calpastatin Inhibitory
Domain C (Dic)
pdb|1NX1|B Chain B, Calpain Domain Vi Complexed With Calpastatin Inhibitory
Domain C (Dic)
pdb|1NX2|A Chain A, Calpain Domain Vi
pdb|1NX3|A Chain A, Calpain Domain Vi In Complex With The Inhibitor Pd150606
Length = 173
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 9/62 (14%)
Query: 122 DKKISAEELMEVLRKMGEK--------YSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRN 173
D ++SA ELM +L K+ + + +D+CR M+ +D+D G + +EF + N
Sbjct: 17 DMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEF-KYLWNN 75
Query: 174 VK 175
+K
Sbjct: 76 IK 77
>pdb|1HQV|A Chain A, Structure Of Apoptosis-Linked Protein Alg-2
Length = 191
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 8/132 (6%)
Query: 37 MRQVFDKFDTNKDGKISQDEYNSALS-VLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIE 95
+ VF + D ++ G IS +E ALS + + D + ++F EF
Sbjct: 28 LWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTG 87
Query: 96 MMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDA 155
+ + D Q F+ +D + I EL + L G + S +IR D
Sbjct: 88 VWKYI-------TDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDR 140
Query: 156 DGDGLIDMDEFM 167
G G I D+F+
Sbjct: 141 QGRGQIAFDDFI 152
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 43 KFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYI--DFKEFIEMMHDM 100
KFD G+I+ D++ VL + + FR DTD+DG+I +++++ M+ +
Sbjct: 137 KFDRQGRGQIAFDDFIQGCIVLQR------LTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 190
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
+ + + VF +D + G I ++E ALS G +S R D G I F +F
Sbjct: 92 ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDF 151
Query: 94 IE 95
I+
Sbjct: 152 IQ 153
>pdb|1NP8|A Chain A, 18-K C-Terminally Trunucated Small Subunit Of Calpain
pdb|1NP8|B Chain B, 18-K C-Terminally Trunucated Small Subunit Of Calpain
Length = 159
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 9/62 (14%)
Query: 122 DKKISAEELMEVLRKMGEK--------YSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRN 173
D ++SA ELM +L K+ + + +D+CR M+ +D+D G + +EF + N
Sbjct: 24 DMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEF-KYLWNN 82
Query: 174 VK 175
+K
Sbjct: 83 IK 84
>pdb|2G9B|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
pdb|2F33|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
Length = 263
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Query: 2 AFQESPQLNQPPKESMPKERQNPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEY---- 57
F E+ +L K+ + E+ N +V + ++ + FD+N DGK+ E
Sbjct: 118 GFIETEELKNFLKDLL--EKANKTVDDTKLAEYTDL--MLKLFDSNNDGKLELTEMARLL 173
Query: 58 ----NSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDI 110
N L G + E K+F D D +GYID E ++ D+ + ++ DI
Sbjct: 174 PVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQELDI 230
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 24/159 (15%)
Query: 36 EMRQVFDKFDTNKDGKISQDEYNSALSVLGKGI---------SKAEMAKSFRFIDTDKDG 86
EM+ D++ DGKI E L + S E K++R DTD G
Sbjct: 59 EMKTFVDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSG 118
Query: 87 YIDFKEFIEMMHDMGDNRVKK-NDIQGA------FQLFDLNGDKKISAEELME------- 132
+I+ +E + D+ + K +D + A +LFD N D K+ E+
Sbjct: 119 FIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQEN 178
Query: 133 -VLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
+L+ G K K D DG+G ID +E ++
Sbjct: 179 FLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALL 217
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 16/140 (11%)
Query: 17 MPKERQNPSVPRASR-SNVQEMRQVFDKFDTNKDGKISQDEYNSALSVL----GKGISKA 71
+P E + R + + +E + + K+DT+ G I +E + L L K +
Sbjct: 84 LPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDT 143
Query: 72 EMAKS----FRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQ-------GAFQLFDLN 120
++A+ + D++ DG ++ E ++ + +K I+ AF+L+D +
Sbjct: 144 KLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQD 203
Query: 121 GDKKISAEELMEVLRKMGEK 140
G+ I EL +L+ + EK
Sbjct: 204 GNGYIDENELDALLKDLCEK 223
>pdb|3SIB|A Chain A, Crystal Structure Of Ure3-Binding Protein, Wild-Type
Length = 220
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 64/160 (40%), Gaps = 21/160 (13%)
Query: 18 PKERQNPSVPRASRSNVQEMRQVFDKF---DTNKDGKISQDEYNSALSVLGKGISKAEMA 74
P R P + + + +++ F D ++ G + +E G +S
Sbjct: 31 PSVRNTWWFPLLNTIPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTAL 90
Query: 75 KSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLF---DLNGDKKISAEELM 131
+ R DTD +G+I F EF+ M M + A+ LF D N + E++
Sbjct: 91 RMMRIFDTDFNGHISFYEFMAMYKFM----------ELAYNLFVMNDRNRSGTLEPHEIL 140
Query: 132 EVLRKMG----EKYSLDSCRKMIRGVD-ADGDGLIDMDEF 166
L+++G ++ SL R RG+ D + I + F
Sbjct: 141 PALQQLGFYINQRTSLLLHRLFARGMAFCDLNCWIAICAF 180
>pdb|2ZN9|A Chain A, Crystal Structure Of Ca2+-bound Form Of Des3-20alg-2
pdb|2ZN9|B Chain B, Crystal Structure Of Ca2+-bound Form Of Des3-20alg-2
pdb|2ZND|A Chain A, Crystal Structure Of Ca2+-Free Form Of Des3-20alg-2
Length = 172
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 8/132 (6%)
Query: 37 MRQVFDKFDTNKDGKISQDEYNSALS-VLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIE 95
+ VF + D ++ G IS E ALS + + D + ++F EF
Sbjct: 9 LWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTG 68
Query: 96 MMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDA 155
+ + D Q F+ +D + I EL + L G + S +IR D
Sbjct: 69 VWKYI-------TDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDR 121
Query: 156 DGDGLIDMDEFM 167
G G I D+F+
Sbjct: 122 QGRGQIAFDDFI 133
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 43 KFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYI--DFKEFIEMMHDM 100
KFD G+I+ D++ VL + + FR DTD+DG+I +++++ M+ +
Sbjct: 118 KFDRQGRGQIAFDDFIQGCIVLQR------LTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 171
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
+ + + VF +D + G I ++E ALS G +S R D G I F +F
Sbjct: 73 ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDF 132
Query: 94 IE 95
I+
Sbjct: 133 IQ 134
>pdb|1DGU|A Chain A, Homology-Based Model Of Calcium-Saturated Cib (Calcium-And
Integrin-Binding Protein)
pdb|1DGV|A Chain A, Homology-Based Model Of Apo Cib (Calcium-And Integrin-
Binding Protein)
pdb|1XO5|A Chain A, Crystal Structure Of Cib1, An Ef-Hand, Integrin And
Kinase- Binding Protein
pdb|1XO5|B Chain B, Crystal Structure Of Cib1, An Ef-Hand, Integrin And
Kinase- Binding Protein
pdb|1Y1A|A Chain A, Crystal Structure Of Calcium And Integrin Binding Protein
pdb|1Y1A|B Chain B, Crystal Structure Of Calcium And Integrin Binding Protein
Length = 183
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 88 IDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM-GE----KYS 142
+ F++F++++ D AF++FD + D ++ E+L ++ + GE + S
Sbjct: 78 LSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLS 137
Query: 143 LDSCRKMIRGV----DADGDGLIDMDEFMTMMTRNVKVA 177
+++I + D D DG I++ EF +++R+ A
Sbjct: 138 ASEMKQLIDNILEESDIDRDGTINLSEFQHVISRSPDFA 176
>pdb|3KPX|A Chain A, Crystal Structure Analysis Of Photoprotein Clytin
Length = 198
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 40 VFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKE 92
VFD FD + G IS DE+ + + G S + K+F+ D D G +D E
Sbjct: 121 VFDIFDKDGSGSISLDEWKTYGGISGICPSDEDAEKTFKHCDLDNSGKLDVDE 173
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 24/159 (15%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALS--VLGK-GISKAEMAKS-------FRFIDTD 83
V + +F+ D N +GKI+ DE S S + K G + A+ + F+ I D
Sbjct: 22 VNRHKFMFNFLDINGNGKITLDEIVSKASDDICAKLGATPAQTQRHQEAVEAFFKKIGLD 81
Query: 84 KDGYIDFKEFIEMMHDMGDNRVK----------KNDIQGAFQLFDLNGDKKISAEELMEV 133
++F F+ ++ + +K +N + F +FD +G IS +E
Sbjct: 82 YGKEVEFPAFVNGWKELAKHDLKLWSQNKKSLIRNWGEAVFDIFDKDGSGSISLDEWKTY 141
Query: 134 LRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
G S + K + D D G +D+DE MTR
Sbjct: 142 GGISGICPSDEDAEKTFKHCDLDNSGKLDVDE----MTR 176
>pdb|3MSE|B Chain B, Crystal Structure Of C-Terminal Domain Of Pf110239
Length = 180
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 38/117 (32%)
Query: 32 SNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLG-------------------------- 65
++++ + ++F K DTN +G +S E + L+ +G
Sbjct: 36 NHIKYINELFYKLDTNHNGSLSHREIYTVLASVGIKKWDINRILQALDINDRGNITYTEF 95
Query: 66 -------KGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHD-MGDNRVKKNDIQGAF 114
K I + +F ID D+DGYI + + ++HD + DN NDI F
Sbjct: 96 MAGCYRWKNIESTFLKAAFNKIDKDEDGYISKSDIVSLVHDKVLDN----NDIDNFF 148
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Query: 61 LSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLN 120
LSV+ I + + F +DT+ +G + +E ++ +G +KK DI Q D+N
Sbjct: 31 LSVINNHIK--YINELFYKLDTNHNGSLSHREIYTVLASVG---IKKWDINRILQALDIN 85
Query: 121 GDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
I+ E M + S + +D D DG I + ++++
Sbjct: 86 DRGNITYTEFMAGCYRWKNIES-TFLKAAFNKIDKDEDGYISKSDIVSLV 134
>pdb|3JTD|C Chain C, Calcium-Free Scallop Myosin Regulatory Domain With
Elc-D19a Point Mutation
Length = 156
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 8/133 (6%)
Query: 27 PRASRSNVQEMRQVFD--KFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDK 84
P+ S+ + +++ VF+ F +DG + + LG ++ F T K
Sbjct: 1 PKLSQDEIDDLKDVFELFAFWDGRDGAVDAFKLGDVCRCLGINPRNEDV---FAVGGTHK 57
Query: 85 DG--YIDFKEFIEMMHDMGDNRVKK-NDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKY 141
G + F+EF+ + D D AF+ FD G IS EL VL +GE+
Sbjct: 58 MGEKSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERL 117
Query: 142 SLDSCRKMIRGVD 154
S + ++I+ D
Sbjct: 118 SDEDVDEIIKLTD 130
>pdb|3AAK|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-20alg-2f122a
Length = 172
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 8/132 (6%)
Query: 37 MRQVFDKFDTNKDGKISQDEYNSALS-VLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIE 95
+ VF + D ++ G IS E ALS + + D + ++F EF
Sbjct: 9 LWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTG 68
Query: 96 MMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDA 155
+ + D Q F+ +D + I EL + L G + S +IR D
Sbjct: 69 VWKYI-------TDWQNVFRTYDRDNSGMIDKNELKQALSGAGYRLSDQFHDILIRKFDR 121
Query: 156 DGDGLIDMDEFM 167
G G I D+F+
Sbjct: 122 QGRGQIAFDDFI 133
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 43 KFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYI--DFKEFIEMMHDM 100
KFD G+I+ D++ VL + + FR DTD+DG+I +++++ M+ +
Sbjct: 118 KFDRQGRGQIAFDDFIQGCIVLQR------LTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 171
>pdb|2L4H|A Chain A, The Solution Structure Of Calcium Bound Cib1
pdb|2L4I|A Chain A, The Solution Structure Of Magnesium Bound Cib1
pdb|2LM5|A Chain A, Solution Structure Of Ca2+-Cib1 In Complex With The
Cytoplasmic Domain Of The Integrin Aiib Subunit
Length = 214
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 88 IDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM-GE----KYS 142
+ F++F++++ D AF++FD + D ++ E+L ++ + GE + S
Sbjct: 109 LSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLS 168
Query: 143 LDSCRKMIRGV----DADGDGLIDMDEFMTMMTRNVKVA 177
+++I + D D DG I++ EF +++R+ A
Sbjct: 169 ASEMKQLIDNILEESDIDRDGTINLSEFQHVISRSPDFA 207
>pdb|2ZN8|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Alg-2
Length = 190
Score = 33.9 bits (76), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 8/132 (6%)
Query: 37 MRQVFDKFDTNKDGKISQDEYNSALS-VLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIE 95
+ VF + D ++ G IS E ALS + + D + ++F EF
Sbjct: 27 LWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTG 86
Query: 96 MMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDA 155
+ + D Q F+ +D + I EL + L G + S +IR D
Sbjct: 87 VWKYI-------TDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDR 139
Query: 156 DGDGLIDMDEFM 167
G G I D+F+
Sbjct: 140 QGRGQIAFDDFI 151
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 43 KFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYI--DFKEFIEMMHDM 100
KFD G+I+ D++ VL + + FR DTD+DG+I +++++ M+ +
Sbjct: 136 KFDRQGRGQIAFDDFIQGCIVLQR------LTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 189
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
+ + + VF +D + G I ++E ALS G +S R D G I F +F
Sbjct: 91 ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDF 150
Query: 94 IE 95
I+
Sbjct: 151 IQ 152
>pdb|2ZNE|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Complexed With Alix Abs Peptide
pdb|2ZNE|B Chain B, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Complexed With Alix Abs Peptide
Length = 169
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 8/132 (6%)
Query: 37 MRQVFDKFDTNKDGKISQDEYNSALS-VLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIE 95
+ VF + D ++ G IS E ALS + + D + ++F EF
Sbjct: 6 LWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTG 65
Query: 96 MMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDA 155
+ + D Q F+ +D + I EL + L G + S +IR D
Sbjct: 66 VWKYI-------TDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDR 118
Query: 156 DGDGLIDMDEFM 167
G G I D+F+
Sbjct: 119 QGRGQIAFDDFI 130
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 43 KFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYI--DFKEFIEMMHDM 100
KFD G+I+ D++ VL + + FR DTD+DG+I +++++ M+ +
Sbjct: 115 KFDRQGRGQIAFDDFIQGCIVLQR------LTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 168
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
+ + + VF +D + G I ++E ALS G +S R D G I F +F
Sbjct: 70 ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDF 129
Query: 94 IE 95
I+
Sbjct: 130 IQ 131
>pdb|2ZRS|A Chain A, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|B Chain B, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|C Chain C, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|D Chain D, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|E Chain E, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|F Chain F, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|G Chain G, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|H Chain H, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|B Chain B, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|C Chain C, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|D Chain D, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|E Chain E, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|F Chain F, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|G Chain G, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|H Chain H, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Length = 168
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 8/132 (6%)
Query: 37 MRQVFDKFDTNKDGKISQDEYNSALS-VLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIE 95
+ VF + D ++ G IS E ALS + + D + ++F EF
Sbjct: 5 LWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTG 64
Query: 96 MMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDA 155
+ + D Q F+ +D + I EL + L G + S +IR D
Sbjct: 65 VWKYI-------TDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDR 117
Query: 156 DGDGLIDMDEFM 167
G G I D+F+
Sbjct: 118 QGRGQIAFDDFI 129
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 43 KFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYI--DFKEFIEMMHDM 100
KFD G+I+ D++ VL + + FR DTD+DG+I +++++ M+ +
Sbjct: 114 KFDRQGRGQIAFDDFIQGCIVLQR------LTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 167
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
+ + + VF +D + G I ++E ALS G +S R D G I F +F
Sbjct: 69 ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDF 128
Query: 94 IE 95
I+
Sbjct: 129 IQ 130
>pdb|3LI6|A Chain A, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
pdb|3LI6|D Chain D, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
pdb|3LI6|G Chain G, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
pdb|3LI6|J Chain J, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
Length = 66
Score = 33.5 bits (75), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 114 FQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEF 166
F+ D+NGD +S EE+ + K + + + + +DADG+G ID +EF
Sbjct: 6 FKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEF 58
>pdb|1SL8|A Chain A, Calcium-Loaded Apo-Aequorin From Aequorea Victoria
Length = 191
Score = 33.5 bits (75), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 24/155 (15%)
Query: 38 RQVFDKFDTNKDGKISQDE--YNSALSVLGKGISKAEMAKSFR-----FIDTDKDGY--- 87
+ +F+ D N +G+IS DE Y ++ V+ + E AK + F Y
Sbjct: 19 KHMFNFLDVNHNGRISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGVE 78
Query: 88 IDFKEFIEMMHDMGDNRVK---KNDIQ-------GAFQLFDLNGDKKISAEELMEVLRKM 137
++ E+IE + +K KN I F + D + + IS +E +
Sbjct: 79 TEWPEYIEGWKRLASEELKRYSKNQITLIRLWGDALFDIIDKDQNGAISLDEWKAYTKSA 138
Query: 138 GEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
G S + C + R D D G +D+DE MTR
Sbjct: 139 GIIQSSEDCEETFRVCDIDESGQLDVDE----MTR 169
Score = 33.1 bits (74), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 28 RASRSNVQEMR----QVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTD 83
R S++ + +R +FD D +++G IS DE+ + G S + ++FR D D
Sbjct: 98 RYSKNQITLIRLWGDALFDIIDKDQNGAISLDEWKAYTKSAGIIQSSEDCEETFRVCDID 157
Query: 84 KDGYIDFKE 92
+ G +D E
Sbjct: 158 ESGQLDVDE 166
>pdb|1IJ5|A Chain A, Metal-Free Structure Of Multidomain Ef-Hand Protein,
Cbp40, From True Slime Mold
pdb|1IJ6|A Chain A, Ca2+-Bound Structure Of Multidomain Ef-Hand Protein,
Cbp40, From True Slime Mold
Length = 323
Score = 33.5 bits (75), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 21/137 (15%)
Query: 41 FDKFDTNKDGKISQDEYNSALSVLG---KGISKAEMAKSFRFIDTDKDGYIDFKEFIEMM 97
F K DTN +G +S+ E+ LG K + A FR+ D D+ + F E++ +
Sbjct: 194 FRKIDTNSNGTLSRKEFREHFVRLGFDKKSVQDA----LFRYADEDESDDVGFSEYVHLG 249
Query: 98 HDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRG----V 153
+ R I AF FD +G ++S EE+ +VL + + +S RK V
Sbjct: 250 LCLLVLR-----ILYAFADFDKSG--QLSKEEVQKVLE---DAHIPESARKKFEHQFSVV 299
Query: 154 DADGDGLIDMDEFMTMM 170
D D + EF+ ++
Sbjct: 300 DVDDSKSLSYQEFVMLV 316
Score = 33.1 bits (74), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 7/118 (5%)
Query: 21 RQNPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFI 80
R PS P S + +RQ+F + GK S + L+ I + + K F +
Sbjct: 108 RLRPSKPMLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMV 167
Query: 81 DTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMG 138
+ D G + + + + +D+ + F+ D N + +S +E E ++G
Sbjct: 168 ENDTKGRMSYITLVAVANDLA-------ALVADFRKIDTNSNGTLSRKEFREHFVRLG 218
>pdb|1S3P|A Chain A, Crystal Structure Of Rat Alpha-parvalbumin S55d/e59d
Mutant
Length = 109
Score = 33.1 bits (74), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 88 IDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM---GEKYSLD 144
D K+F +M+ G + +D++ F + D + D I +EL +L+ S
Sbjct: 24 FDHKKFFQMV---GLKKKSADDVKKVFHILDKDKDGFIDEDELGSILKGFSSDARDLSAK 80
Query: 145 SCRKMIRGVDADGDGLIDMDEFMTMMTRN 173
+ ++ D DGDG I ++EF T++ +
Sbjct: 81 ETKTLMAAGDKDGDGKIGVEEFSTLVAES 109
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 31 RSNVQEMRQVFDKFDTNKDGKISQDEYNSAL---SVLGKGISKAEMAKSFRFIDTDKDGY 87
+ + ++++VF D +KDG I +DE S L S + +S E D D DG
Sbjct: 37 KKSADDVKKVFHILDKDKDGFIDEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGK 96
Query: 88 IDFKEFIEMM 97
I +EF ++
Sbjct: 97 IGVEEFSTLV 106
>pdb|2QAC|A Chain A, The Closed Mtip-myosina-tail Complex From The Malaria
Parasite Invasion Machinery
pdb|4AOM|A Chain A, Mtip And Myoa Complex
Length = 146
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 25 SVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDK 84
S+ + NV+E+ ++F FD N G +++ + + L+ G ++ E + ++
Sbjct: 74 SICVHDKDNVEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAFSSED 133
Query: 85 DGYIDFKEFIE 95
+ ID+K F E
Sbjct: 134 N--IDYKLFCE 142
>pdb|2W4T|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 151
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 8/130 (6%)
Query: 30 SRSNVQEMRQVFDKFD--TNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDG- 86
S+ + +++ VF+ FD +DG + + LG ++ F T K G
Sbjct: 1 SQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDV---FAVGGTHKMGE 57
Query: 87 -YIDFKEFIEMMHDMGD-NRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLD 144
+ F+EF+ + D + D AF+ FD G IS EL VL +GE+ S +
Sbjct: 58 KSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDE 117
Query: 145 SCRKMIRGVD 154
++I+ D
Sbjct: 118 DVDEIIKLTD 127
>pdb|1DFK|Z Chain Z, Nucleotide-Free Scallop Myosin S1-Near Rigor State
pdb|1DFL|Z Chain Z, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|X Chain X, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
Length = 152
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 8/130 (6%)
Query: 30 SRSNVQEMRQVFDKFD--TNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDG- 86
S+ + +++ VF+ FD +DG + + LG ++ F T K G
Sbjct: 2 SQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDV---FAVGGTHKMGE 58
Query: 87 -YIDFKEFIEMMHDMGD-NRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLD 144
+ F+EF+ + D + D AF+ FD G IS EL VL +GE+ S +
Sbjct: 59 KSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDE 118
Query: 145 SCRKMIRGVD 154
++I+ D
Sbjct: 119 DVDEIIKLTD 128
>pdb|1OMD|A Chain A, Structure Of Oncomodulin Refined At 1.85 Angstroms
Resolution. An Example Of Extensive Molecular
Aggregation Via Ca2+
pdb|1RRO|A Chain A, Refinement Of Recombinant Oncomodulin At 1.30 Angstroms
Resolution
pdb|2NLN|A Chain A, Solution Structure Of Calcium-Free Rat Beta-Parvalbumin
Length = 108
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 68 ISKAEMAKSFRFIDTDKDGYID---FKEFIEMMHDMGDNR-VKKNDIQGAFQLFDLNGDK 123
+S +++ FRFID D+ GY+D K F++ D R + +++ + D +GD
Sbjct: 38 MSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQ--SDARELTESETKSLMDAADNDGDG 95
Query: 124 KISAEELMEVLR 135
KI A+E E++
Sbjct: 96 KIGADEFQEMVH 107
>pdb|1SCM|C Chain C, Structure Of The Regulatory Domain Of Scallop Myosin At
2.8 Angstroms Resolution
Length = 149
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 8/130 (6%)
Query: 30 SRSNVQEMRQVFDKFD--TNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDG- 86
S+ + +++ VF+ FD +DG + + LG ++ F T K G
Sbjct: 1 SQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDV---FAVGGTHKMGE 57
Query: 87 -YIDFKEFIEMMHDMGDNRVKK-NDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLD 144
+ F+EF+ + D D AF+ FD G IS EL VL +GE+ S +
Sbjct: 58 KSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDE 117
Query: 145 SCRKMIRGVD 154
++I+ D
Sbjct: 118 DVDEIIKLTD 127
>pdb|1EJ3|A Chain A, Crystal Structure Of Aequorin
pdb|1EJ3|B Chain B, Crystal Structure Of Aequorin
pdb|1UHI|A Chain A, Crystal Structure Of I-aequorin
pdb|1UHI|B Chain B, Crystal Structure Of I-aequorin
pdb|1UHK|A Chain A, Crystal Structure Of N-Aequorin
pdb|1UHK|B Chain B, Crystal Structure Of N-Aequorin
Length = 191
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 40 VFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKE 92
+FD D +++G I+ DE+ + G S + ++FR D D+ G +D E
Sbjct: 114 LFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDE 166
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 24/159 (15%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDE--YNSALSVLGKGISKAEMAKSFR------------- 78
+ + +F+ D N +GKIS DE Y ++ V+ + E AK +
Sbjct: 15 IGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMK 74
Query: 79 -FIDTDKDGYID-FKEF-IEMMHDMGDNRVKKNDIQG--AFQLFDLNGDKKISAEELMEV 133
++TD YI+ +K+ + + N I G F + D + + I+ +E
Sbjct: 75 YGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAY 134
Query: 134 LRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
+ G S + C + R D D G +D+DE MTR
Sbjct: 135 TKAAGIIQSSEDCEETFRVCDIDESGQLDVDE----MTR 169
>pdb|1YX7|A Chain A, Nmr Structure Of Calsensin, Energy Minimized Average
Structure.
pdb|1YX8|A Chain A, Nmr Structure Of Calsensin, 20 Low Energy Structures
Length = 83
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 107 KNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSL------DSCRKMIRGVDADGDGL 160
K +++ AF+ D NGD ++A EL + + +L ++ K+I+ D + DG
Sbjct: 6 KAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGK 65
Query: 161 IDMDEFM 167
I +EF+
Sbjct: 66 ISKEEFL 72
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 36 EMRQVFDKFDTNKDGKISQDEYNS------ALSVLGKGISKAEMAKSFRFIDTDKDGYID 89
E+ F K D N DG ++ E + A L K K AK + D + DG I
Sbjct: 8 ELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKIS 67
Query: 90 FKEFI 94
+EF+
Sbjct: 68 KEEFL 72
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 70 KAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNR-VKKNDIQGA----FQLFDLNGDKK 124
KAE+ +F+ +D + DGY+ E M + + + K+ ++ A ++ D N D K
Sbjct: 6 KAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGK 65
Query: 125 ISAEELM 131
IS EE +
Sbjct: 66 ISKEEFL 72
>pdb|1PON|A Chain A, Site Iii-Site Iv Troponin C Heterodimer, Nmr
pdb|1CTA|A Chain A, Determination Of The Solution Structure Of A Synthetic
Two- Site Calcium-Binding Homodimeric Protein Domain By
Nmr Spectroscopy
pdb|1CTA|B Chain B, Determination Of The Solution Structure Of A Synthetic
Two- Site Calcium-Binding Homodimeric Protein Domain By
Nmr Spectroscopy
pdb|1CTD|A Chain A, Determination Of The Solution Structure Of A Synthetic
Two- Site Calcium-Binding Homodimeric Protein Domain By
Nmr Spectroscopy
pdb|1CTD|B Chain B, Determination Of The Solution Structure Of A Synthetic
Two- Site Calcium-Binding Homodimeric Protein Domain By
Nmr Spectroscopy
Length = 36
Score = 31.6 bits (70), Expect = 0.25, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 69 SKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMG 101
S+ E+A +FR D + DGYID +E E++ G
Sbjct: 3 SEEELANAFRIFDKNADGYIDIEELGEILRATG 35
Score = 29.3 bits (64), Expect = 1.4, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 107 KNDIQGAFQLFDLNGDKKISAEELMEVLRKMG 138
+ ++ AF++FD N D I EEL E+LR G
Sbjct: 4 EEELANAFRIFDKNADGYIDIEELGEILRATG 35
>pdb|2SAS|A Chain A, Structure Of A Sarcoplasmic Calcium-Binding Protein From
Amphioxus Refined At 2.4 Angstroms Resolution
Length = 185
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 65/147 (44%), Gaps = 42/147 (28%)
Query: 35 QEMRQVFDKF-DTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEF 93
Q+++ FD F D N DG I +++ ++ K ++K ++ + D+K
Sbjct: 8 QKIKFTFDFFLDMNHDGSIQDNDFEDMMTRY-KEVNKGSLSDA------------DYKSM 54
Query: 94 IEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRK----- 148
+ D + D++G D+N D +S EE + + K ++ +C+
Sbjct: 55 QASLED------EWRDLKGRA---DINKDDVVSWEEYLAMWEK-----TIATCKSVADLP 100
Query: 149 ---------MIRGVDADGDGLIDMDEF 166
+ +G+D GDG++D++EF
Sbjct: 101 AWCQNRIPFLFKGMDVSGDGIVDLEEF 127
>pdb|1UHH|A Chain A, Crystal Structure Of Cp-Aequorin
pdb|1UHH|B Chain B, Crystal Structure Of Cp-Aequorin
pdb|1UHJ|A Chain A, Crystal Structure Of Br-Aequorin
pdb|1UHJ|B Chain B, Crystal Structure Of Br-Aequorin
Length = 191
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 40 VFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKE 92
+FD D +++G I+ DE+ + G S + ++FR D D+ G +D E
Sbjct: 114 LFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDE 166
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 20/152 (13%)
Query: 34 VQEMRQVFDKFDTNKDGKISQDE--YNSALSVLGKGISKAEMAKSFR-----FIDTDKDG 86
+ + F+ D N +GKIS DE Y ++ V+ + E AK + F
Sbjct: 15 IGRHKHXFNFLDVNHNGKISLDEXVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGXK 74
Query: 87 Y---IDFKEFIEMMHDMGDNRVKKND--------IQG--AFQLFDLNGDKKISAEELMEV 133
Y D+ +IE + + ++K I G F + D + + I+ +E
Sbjct: 75 YGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAY 134
Query: 134 LRKMGEKYSLDSCRKMIRGVDADGDGLIDMDE 165
+ G S + C + R D D G +D+DE
Sbjct: 135 TKAAGIIQSSEDCEETFRVCDIDESGQLDVDE 166
>pdb|3F45|A Chain A, Structure Of The R75a Mutant Of Rat Alpha-Parvalbumin
Length = 109
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 89 DFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM---GEKYSLDS 145
D K+F +M+ G + +D++ F + D + I +EL +L+ S
Sbjct: 25 DHKKFFQMV---GLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDAADLSAKE 81
Query: 146 CRKMIRGVDADGDGLIDMDEFMTMMTRN 173
+ ++ D DGDG I ++EF T++ +
Sbjct: 82 TKTLMAAGDKDGDGKIGVEEFSTLVAES 109
>pdb|1RTP|1 Chain 1, Refined X-ray Structure Of Rat Parvalbumin, A Mammalian
Alpha-lineage Parvalbumin, At 2.0 A Resolution
pdb|1RTP|2 Chain 2, Refined X-ray Structure Of Rat Parvalbumin, A Mammalian
Alpha-lineage Parvalbumin, At 2.0 A Resolution
pdb|1RTP|3 Chain 3, Refined X-ray Structure Of Rat Parvalbumin, A Mammalian
Alpha-lineage Parvalbumin, At 2.0 A Resolution
pdb|1RWY|A Chain A, Crystal Structure Of Rat Alpha-parvalbumin At 1.05
Resolution
pdb|1RWY|B Chain B, Crystal Structure Of Rat Alpha-parvalbumin At 1.05
Resolution
pdb|1RWY|C Chain C, Crystal Structure Of Rat Alpha-parvalbumin At 1.05
Resolution
pdb|2JWW|A Chain A, Calcium-Free Rat Alpha-Parvalbumin
Length = 109
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 88 IDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM---GEKYSLD 144
D K+F +M+ G + +D++ F + D + I +EL +L+ S
Sbjct: 24 FDHKKFFQMV---GLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAK 80
Query: 145 SCRKMIRGVDADGDGLIDMDEFMTMMTRN 173
+ ++ D DGDG I ++EF T++ +
Sbjct: 81 ETKTLMAAGDKDGDGKIGVEEFSTLVAES 109
>pdb|2E6W|A Chain A, Solution Structure And Calcium Binding Properties Of Ef-
Hands 3 And 4 Of Calsenilin
Length = 100
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 19/96 (19%)
Query: 35 QEMRQVFDKFDTNKDGKISQDEYNSALS------------VLGKGISKAEMAKSFRFIDT 82
++++ F+ +D NKDG I+++E + + +L + + + F +D
Sbjct: 9 EKLKWAFNLYDINKDGYITKEEMLAIMKSIYDMMGRHTYPILREDAPAEHVERFFEKMDR 68
Query: 83 DKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFD 118
++DG + +EF+E K +I + QLF+
Sbjct: 69 NQDGVVTIEEFLEACQ-------KDENIMSSMQLFE 97
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 12/70 (17%)
Query: 110 IQGAFQLFDLNGDKKISAEELMEVLRK----MG--------EKYSLDSCRKMIRGVDADG 157
++ AF L+D+N D I+ EE++ +++ MG E + + +D +
Sbjct: 11 LKWAFNLYDINKDGYITKEEMLAIMKSIYDMMGRHTYPILREDAPAEHVERFFEKMDRNQ 70
Query: 158 DGLIDMDEFM 167
DG++ ++EF+
Sbjct: 71 DGVVTIEEFL 80
>pdb|1DVI|A Chain A, Calpain Domain Vi With Calcium Bound
pdb|1DVI|B Chain B, Calpain Domain Vi With Calcium Bound
Length = 184
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 122 DKKISAEELMEVLRKMGEK--------YSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRN 173
D ++SA ELM +L K+ + + +D+ R M+ +D+D G + +EF + N
Sbjct: 28 DMEVSATELMNILNKVVTRHPDLKTDGFGIDTSRSMVAVMDSDTTGKLGFEEF-KYLWNN 86
Query: 174 VK 175
+K
Sbjct: 87 IK 88
>pdb|2KYC|A Chain A, Solution Structure Of Ca-Free Chicken Parvalbumin 3 (Cpv3)
pdb|2KYF|A Chain A, Solution Structure Of Calcium-Bound Cpv3
Length = 108
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 69 SKAEMAKSFRFIDTDKDGYI---DFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKI 125
S +++ + FR +D D+ G+I + K F++ + G + ++ + D +GD KI
Sbjct: 39 SSSQLKEIFRILDNDQSGFIEEDELKYFLQRF-ESGARVLTASETKTFLAAADHDGDGKI 97
Query: 126 SAEELMEVLR 135
AEE E+++
Sbjct: 98 GAEEFQEMVQ 107
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDE-------YNSALSVLGKGISKAEMAKSFRFIDT 82
S+ + +++++F D ++ G I +DE + S VL +K +A + D
Sbjct: 36 SKKSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAA----DH 91
Query: 83 DKDGYIDFKEFIEMMH 98
D DG I +EF EM+
Sbjct: 92 DGDGKIGAEEFQEMVQ 107
>pdb|1JUO|A Chain A, Crystal Structure Of Calcium-Free Human Sorcin: A Member
Of The Penta-Ef-Hand Protein Family
pdb|1JUO|B Chain B, Crystal Structure Of Calcium-Free Human Sorcin: A Member
Of The Penta-Ef-Hand Protein Family
Length = 198
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 122 DKKISAEELMEVLRKMG-----EKYSLDSCRKMIRGVDADGDGLIDMDEF 166
D +I A+EL L + G + ++L++CR M+ +D D G + +EF
Sbjct: 46 DGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEF 95
>pdb|2JC2|A Chain A, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
pdb|2JC2|B Chain B, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
pdb|2JC2|C Chain C, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
pdb|2JC2|D Chain D, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
Length = 198
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 122 DKKISAEELMEVLRKMG-----EKYSLDSCRKMIRGVDADGDGLIDMDEF 166
D +I A+EL L + G + ++L++CR M+ +D D G + +EF
Sbjct: 46 DGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEF 95
>pdb|1RJV|A Chain A, Solution Structure Of Human Alpha-Parvalbumin Refined With
A Paramagnetism-Based Strategy
pdb|1RK9|A Chain A, Solution Structure Of Human Alpha-Parvalbumin (Minimized
Average Structure)
Length = 110
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 88 IDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM---GEKYSLD 144
D K+F +M+ G + +D++ F + D + I +EL +L+ S
Sbjct: 25 FDHKKFFQMV---GLKKKSADDVKKVFHMLDKDKSGFIEEDELGFILKGFSPDARDLSAK 81
Query: 145 SCRKMIRGVDADGDGLIDMDEFMTMMTRN 173
+ ++ D DGDG I +DEF T++ +
Sbjct: 82 ETKMLMAAGDKDGDGKIGVDEFSTLVAES 110
>pdb|2LVV|A Chain A, Nmr Structure Of Tb24
Length = 226
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 17 MPKERQNPSVPRASRSNVQEMR-QVFDKFDTNKDGKIS-------------QDEYNSAL- 61
+ ER ++PR + + R ++F +FDTN GK+ DE+ + L
Sbjct: 32 VAWERIRCAIPRDKDAESKSRRIELFKQFDTNGTGKLGFREVLDGCYGILKLDEFTTHLP 91
Query: 62 SVLGKGISKA-EMAKSFRFI-DTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDL 119
++ + KA ++ + + + D +++F+ + ++D+ + V F D
Sbjct: 92 DIVQRAFDKAKDLGNKVKGVGEEDLVEFLEFRLMLCYIYDIFELTV-------MFDTMDK 144
Query: 120 NGDKKISAEELMEVLRKMGEKYSLD--SCRKMIRGVDADGDGLIDMDEFMTM-MTRNVKV 176
+G + +E E L K+ E + +D + +D +G G++ DEF +T+ ++V
Sbjct: 145 DGSLLLELQEFKEALPKLKE-WGVDITDATTVFNEIDTNGSGVVTFDEFSCWAVTKKLQV 203
Query: 177 A 177
Sbjct: 204 C 204
>pdb|1GJY|A Chain A, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
pdb|1GJY|B Chain B, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
pdb|1GJY|C Chain C, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
pdb|1GJY|D Chain D, The X-Ray Structure Of The Sorcin Calcium Binding Domain
(Scbd) Provides Insight Into The Phosphorylation And
Calcium Dependent Processess
Length = 167
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 122 DKKISAEELMEVLRKMG-----EKYSLDSCRKMIRGVDADGDGLIDMDEF 166
D +I A+EL L + G + ++L++CR M+ +D D G + +EF
Sbjct: 15 DGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEF 64
>pdb|1K95|A Chain A, Crystal Structure Of Des(1-52)grancalcin With Bound
Calcium
pdb|1K94|A Chain A, Crystal Structure Of Des(1-52)grancalcin With Bound
Calcium
pdb|1K94|B Chain B, Crystal Structure Of Des(1-52)grancalcin With Bound
Calcium
Length = 165
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 122 DKKISAEELMEVLRKMG-----EKYSLDSCRKMIRGVDADGDGLIDMDEF 166
D ++ AEEL L + G +SL++CR MI +D D G + + F
Sbjct: 13 DGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAF 62
>pdb|1F4O|A Chain A, Crystal Structure Of Grancalcin With Bound Calcium
pdb|1F4O|B Chain B, Crystal Structure Of Grancalcin With Bound Calcium
pdb|1F4Q|A Chain A, Crystal Structure Of Apo Grancalcin
pdb|1F4Q|B Chain B, Crystal Structure Of Apo Grancalcin
Length = 165
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 122 DKKISAEELMEVLRKMG-----EKYSLDSCRKMIRGVDADGDGLIDMDEF 166
D ++ AEEL L + G +SL++CR MI +D D G + + F
Sbjct: 13 DGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAF 62
>pdb|2L50|A Chain A, Solution Structure Of Apo S100a16
pdb|2L50|B Chain B, Solution Structure Of Apo S100a16
pdb|2L51|A Chain A, Solution Structure Of Calcium Bound S100a16
pdb|2L51|B Chain B, Solution Structure Of Calcium Bound S100a16
Length = 102
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 128 EELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
+EL +L G + + D K+I+ +DA+ DG I DE+ T++
Sbjct: 43 KELNHMLSDTGNRKAAD---KLIQNLDANHDGRISFDEYWTLI 82
>pdb|1XVJ|A Chain A, Crystal Structure Of Rat Alpha-Parvalbumin D94sG98E MUTANT
pdb|1XVJ|B Chain B, Crystal Structure Of Rat Alpha-Parvalbumin D94sG98E MUTANT
Length = 109
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 89 DFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM---GEKYSLDS 145
D K+F +M+ G + +D++ F + D + I +EL +L+ S
Sbjct: 25 DHKKFFQMV---GLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKE 81
Query: 146 CRKMIRGVDADGDGLIDMDEFMTMMTRN 173
+ ++ D DG G I+++EF T++ +
Sbjct: 82 TKTLMAAGDKDGSGKIEVEEFSTLVAES 109
>pdb|5PAL|A Chain A, Crystal Structure Of The Unique Parvalbumin Component From
Muscle Of The Leopard Shark (Triakis Semifasciata). The
First X-Ray Study Of An Alpha-Parvalbumin
Length = 109
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 86 GYIDFKEFIEMMHDMG--DNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM---GEK 140
G D+K F ++ G D +VK+ F++ D + I EEL VL+ G
Sbjct: 22 GTFDYKRFFHLVGLKGKTDAQVKE-----VFEILDKDQSGFIEEEELKGVLKGFSAHGRD 76
Query: 141 YSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
+ + ++ D+D DG I DEF M+ +
Sbjct: 77 LNDTETKALLAAGDSDHDGKIGADEFAKMVAQ 108
>pdb|3NXA|A Chain A, X-Ray Structure Of The Apo Form Of Human S100a16
pdb|3NXA|B Chain B, X-Ray Structure Of The Apo Form Of Human S100a16
pdb|3NXA|C Chain C, X-Ray Structure Of The Apo Form Of Human S100a16
pdb|3NXA|D Chain D, X-Ray Structure Of The Apo Form Of Human S100a16
Length = 100
Score = 29.6 bits (65), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 128 EELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
+EL +L G + + D K+I+ +DA+ DG I DE+ T++
Sbjct: 42 KELNHMLSDTGNRKAAD---KLIQNLDANHDGRISFDEYWTLI 81
>pdb|3OGU|A Chain A, Dna Polymerase Beta Mutant 5p20 Complexed With 6bp Of Dna
Length = 335
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 22/125 (17%)
Query: 51 KISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDI 110
KI QD+ +S++++L + +S + + +F+D E I+ + D+ N K N
Sbjct: 87 KIRQDDTSSSINLLTR-VSGIGPSAARKFVD----------EGIKTLEDLRKNEDKLNHH 135
Query: 111 QGAFQLFDLNGDKKISAEELMEV-------LRKMGEKYSLDSCRKMIRGVDADGDGLIDM 163
Q + + +K+I EE++++ ++K+ +Y C RG ++ G DM
Sbjct: 136 QRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSG----DM 191
Query: 164 DEFMT 168
D +T
Sbjct: 192 DVLLT 196
>pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
pdb|1I6H|A Chain A, Rna Polymerase Ii Elongation Complex
pdb|1K83|A Chain A, Crystal Structure Of Yeast Rna Polymerase Ii Complexed With
The Inhibitor Alpha Amanitin
pdb|1NIK|A Chain A, Wild Type Rna Polymerase Ii
pdb|1NT9|A Chain A, Complete 12-Subunit Rna Polymerase Ii
pdb|1PQV|A Chain A, Rna Polymerase Ii-Tfiis Complex
pdb|1R5U|A Chain A, Rna Polymerase Ii Tfiib Complex
pdb|1SFO|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex
pdb|1R9S|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
pdb|1R9T|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
pdb|1TWA|A Chain A, Rna Polymerase Ii Complexed With Atp
pdb|1TWC|A Chain A, Rna Polymerase Ii Complexed With Gtp
pdb|1TWF|A Chain A, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
pdb|1TWG|A Chain A, Rna Polymerase Ii Complexed With Ctp
pdb|1TWH|A Chain A, Rna Polymerase Ii Complexed With 2'datp
pdb|1WCM|A Chain A, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
pdb|1Y1W|A Chain A, Complete Rna Polymerase Ii Elongation Complex
pdb|1Y77|A Chain A, Complete Rna Polymerase Ii Elongation Complex With Substrate
Analogue Gmpcpp
pdb|1Y1V|A Chain A, Refined Rna Polymerase Ii-tfiis Complex
pdb|1Y1Y|A Chain A, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
pdb|2B63|A Chain A, Complete Rna Polymerase Ii-Rna Inhibitor Complex
pdb|2B8K|A Chain A, 12-Subunit Rna Polymerase Ii
pdb|2E2H|A Chain A, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
pdb|2E2I|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
pdb|2E2J|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
pdb|2NVQ|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
pdb|2NVT|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
pdb|2NVX|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
pdb|2NVY|A Chain A, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
pdb|2NVZ|A Chain A, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
pdb|2JA5|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex A
pdb|2JA6|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex B
pdb|2JA7|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
pdb|2JA7|M Chain M, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
pdb|2JA8|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex D
pdb|2YU9|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With Utp
pdb|2R7Z|A Chain A, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
pdb|2R92|A Chain A, Elongation Complex Of Rna Polymerase Ii With Artificial Rdrp
Scaffold
pdb|2R93|A Chain A, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
pdb|2VUM|A Chain A, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
pdb|3CQZ|A Chain A, Crystal Structure Of 10 Subunit Rna Polymerase Ii In Complex
With The Inhibitor Alpha-Amanitin
pdb|3FKI|A Chain A, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
pdb|3GTG|A Chain A, Backtracked Rna Polymerase Ii Complex With 12mer Rna
pdb|3GTJ|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer Rna
pdb|3GTK|A Chain A, Backtracked Rna Polymerase Ii Complex With 18mer Rna
pdb|3GTL|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
pdb|3GTM|A Chain A, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
pdb|3GTO|A Chain A, Backtracked Rna Polymerase Ii Complex With 15mer Rna
pdb|3GTP|A Chain A, Backtracked Rna Polymerase Ii Complex With 24mer Rna
pdb|3GTQ|A Chain A, Backtracked Rna Polymerase Ii Complex Induced By Damage
pdb|3H3V|B Chain B, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
pdb|3HOU|A Chain A, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
pdb|3HOU|M Chain M, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
pdb|3HOV|A Chain A, Complete Rna Polymerase Ii Elongation Complex Ii
pdb|3HOW|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iii With A T-U
Mismatch And A Frayed Rna 3'-Uridine
pdb|3HOX|A Chain A, Complete Rna Polymerase Ii Elongation Complex V
pdb|3HOY|A Chain A, Complete Rna Polymerase Ii Elongation Complex Vi
pdb|3HOZ|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iv With A T-U
Mismatch And A Frayed Rna 3'-Guanine
pdb|3I4M|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation Complex
D
pdb|3I4N|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation Complex
E
pdb|3K1F|A Chain A, Crystal Structure Of Rna Polymerase Ii In Complex With Tfiib
pdb|3K7A|A Chain A, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
pdb|3M3Y|A Chain A, Rna Polymerase Ii Elongation Complex C
pdb|3M4O|A Chain A, Rna Polymerase Ii Elongation Complex B
pdb|3PO2|A Chain A, Arrested Rna Polymerase Ii Elongation Complex
pdb|3PO3|A Chain A, Arrested Rna Polymerase Ii Reactivation Intermediate
pdb|3QT1|A Chain A, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
pdb|3RZD|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
pdb|3RZO|A Chain A, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
pdb|3S14|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
pdb|3S15|A Chain A, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
pdb|3S16|A Chain A, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
pdb|3S17|A Chain A, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
pdb|3S1M|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
pdb|3S1N|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
pdb|3S1Q|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
pdb|3S1R|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
pdb|3S2D|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
pdb|3S2H|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
pdb|4BBR|A Chain A, Structure Of Rna Polymerase Ii-tfiib Complex
pdb|4BBS|A Chain A, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
Length = 1733
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/97 (19%), Positives = 39/97 (40%)
Query: 51 KISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDI 110
+I + + + VLG +A + K + Y++++ ++ M +
Sbjct: 1326 RIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVT 1385
Query: 111 QGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCR 147
+ F + + S EE +E+L + G LD CR
Sbjct: 1386 RHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCR 1422
>pdb|4A3C|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
pdb|4A3B|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
pdb|4A3D|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
pdb|4A3E|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3F|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3J|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
pdb|4A3K|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
pdb|4A3L|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3M|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3G|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
pdb|4A3I|A Chain A, Rna Polymerase Ii Binary Complex With Dna
pdb|4A93|A Chain A, Rna Polymerase Ii Elongation Complex Containing A Cpd Lesion
Length = 1732
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/97 (19%), Positives = 39/97 (40%)
Query: 51 KISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDI 110
+I + + + VLG +A + K + Y++++ ++ M +
Sbjct: 1326 RIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVT 1385
Query: 111 QGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCR 147
+ F + + S EE +E+L + G LD CR
Sbjct: 1386 RHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCR 1422
>pdb|1WY9|A Chain A, Crystal Structure Of Microglia-Specific Protein, Iba1
Length = 147
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 117 FDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170
FDLNG+ I L +L K+G + +++IR V + + +F+ MM
Sbjct: 57 FDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSDFLRMM 110
>pdb|2AUC|A Chain A, Structure Of The Plasmodium Mtip-Myoa Complex, A Key
Component Of The Parasite Invasion Motor
pdb|2AUC|B Chain B, Structure Of The Plasmodium Mtip-Myoa Complex, A Key
Component Of The Parasite Invasion Motor
pdb|2AUC|C Chain C, Structure Of The Plasmodium Mtip-Myoa Complex, A Key
Component Of The Parasite Invasion Motor
Length = 126
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 31 RSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFR-FIDTDKDGYID 89
R N +E+ + F FD N G +++++ + L+ G +++ E + F D+ I+
Sbjct: 61 RDNXEELIKXFSHFDNNSSGFLTKNQXKNILTTWGDALTEQEANDALNAFSSEDR---IN 117
Query: 90 FKEFIE 95
+K F E
Sbjct: 118 YKLFCE 123
>pdb|2JPT|A Chain A, Structural Changes Induced In Apo-s100a1 Protein By The
Disulphide Formation Between Its Cys85 Residue And B-
Mercaptoethanol
pdb|2JPT|B Chain B, Structural Changes Induced In Apo-s100a1 Protein By The
Disulphide Formation Between Its Cys85 Residue And B-
Mercaptoethanol
Length = 93
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 121 GDK-KISAEELMEVLRK-----MGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMT 171
GDK K+S +EL E+L+ + + D+ K+++ +D DGDG +D E++ ++
Sbjct: 23 GDKYKLSKKELKELLQTELSGFLDAQKDADAVDKVMKELDEDGDGEVDFQEYVVLVA 79
>pdb|3J0K|A Chain A, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
Length = 1455
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/97 (19%), Positives = 39/97 (40%)
Query: 51 KISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDI 110
+I + + + VLG +A + K + Y++++ ++ M +
Sbjct: 1326 RIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVT 1385
Query: 111 QGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCR 147
+ F + + S EE +E+L + G LD CR
Sbjct: 1386 RHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCR 1422
>pdb|1J7Q|A Chain A, Solution Structure And Backbone Dynamics Of The Defunct
Ef- Hand Domain Of Calcium Vector Protein
pdb|1J7R|A Chain A, Solution Structure And Backbone Dynamics Of The Defunct
Ef- Hand Domain Of Calcium Vector Protein
Length = 86
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 107 KNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYS---LDSCRKMIRGVDADGDGLIDM 163
K++ F +FD N + + M++L K+G+ Y+ ++ K RG D I
Sbjct: 13 KDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEARGPKGDKKN-IGP 71
Query: 164 DEFMTMMTRNVK 175
+E++T+ ++ V+
Sbjct: 72 EEWLTLCSKWVR 83
>pdb|3A8R|A Chain A, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
pdb|3A8R|B Chain B, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
Length = 179
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Query: 89 DFKEFIEMMHDMG-DNRVKKNDIQGAFQLFDLNGDKKISAEELMEVL 134
+ K+F E + D G DNR++ F + D N D +++AEE+ E++
Sbjct: 83 ELKDFYEQLTDQGFDNRLRT-----FFDMVDKNADGRLTAEEVKEII 124
>pdb|1RP5|A Chain A, Pbp2x From Streptococcus Pneumoniae Strain 5259 With
Reduced Susceptibility To Beta-Lactam Antibiotics
pdb|1RP5|B Chain B, Pbp2x From Streptococcus Pneumoniae Strain 5259 With
Reduced Susceptibility To Beta-Lactam Antibiotics
Length = 702
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 58 NSALSVLGKGIS--KAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKN 108
N A+S G+GIS + +M ++F I DG + +FI ++D D V+K+
Sbjct: 396 NIAMSAFGQGISVTQTQMLRAFTAI--ANDGVMLEPKFISALYDPNDQSVRKS 446
>pdb|1A75|B Chain B, Whiting Parvalbumin
Length = 109
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 67 GISKAEMAKSFRFIDTDKDGYI---DFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDK 123
G S ++ K+F FID DK G+I + K F+++ G + + + + D +GD
Sbjct: 38 GKSADDIKKAFVFIDQDKSGFIEEDELKLFLQVFK-AGARALTDAETKAFLKAGDSDGDG 96
Query: 124 KISAEELMEVLR 135
I EE + +++
Sbjct: 97 AIGVEEWVALVK 108
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKG---ISKAEMAKSFRFIDTDKDG 86
S + ++++ F D +K G I +DE L V G ++ AE + D+D DG
Sbjct: 37 SGKSADDIKKAFVFIDQDKSGFIEEDELKLFLQVFKAGARALTDAETKAFLKAGDSDGDG 96
Query: 87 YIDFKEFIEMM 97
I +E++ ++
Sbjct: 97 AIGVEEWVALV 107
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 108 NDIQGAFQLFDLNGDKKISAEELMEVLR--KMGEKYSLDS-CRKMIRGVDADGDGLIDMD 164
+DI+ AF D + I +EL L+ K G + D+ + ++ D+DGDG I ++
Sbjct: 42 DDIKKAFVFIDQDKSGFIEEDELKLFLQVFKAGARALTDAETKAFLKAGDSDGDGAIGVE 101
Query: 165 EFMTMM 170
E++ ++
Sbjct: 102 EWVALV 107
>pdb|1A75|A Chain A, Whiting Parvalbumin
Length = 108
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 67 GISKAEMAKSFRFIDTDKDGYI---DFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDK 123
G S ++ K+F FID DK G+I + K F+++ G + + + + D +GD
Sbjct: 37 GKSADDIKKAFVFIDQDKSGFIEEDELKLFLQVFK-AGARALTDAETKAFLKAGDSDGDG 95
Query: 124 KISAEELMEVLR 135
I EE + +++
Sbjct: 96 AIGVEEWVALVK 107
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKG---ISKAEMAKSFRFIDTDKDG 86
S + ++++ F D +K G I +DE L V G ++ AE + D+D DG
Sbjct: 36 SGKSADDIKKAFVFIDQDKSGFIEEDELKLFLQVFKAGARALTDAETKAFLKAGDSDGDG 95
Query: 87 YIDFKEFIEMM 97
I +E++ ++
Sbjct: 96 AIGVEEWVALV 106
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 108 NDIQGAFQLFDLNGDKKISAEELMEVLR--KMGEKYSLDS-CRKMIRGVDADGDGLIDMD 164
+DI+ AF D + I +EL L+ K G + D+ + ++ D+DGDG I ++
Sbjct: 41 DDIKKAFVFIDQDKSGFIEEDELKLFLQVFKAGARALTDAETKAFLKAGDSDGDGAIGVE 100
Query: 165 EFMTMM 170
E++ ++
Sbjct: 101 EWVALV 106
>pdb|2I7A|A Chain A, Domain Iv Of Human Calpain 13
Length = 174
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 138 GEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRNVK 175
G+ +SLD CR ++ ++ +G +D +EF + R V
Sbjct: 40 GDMFSLDECRSLVALMELKVNGRLDQEEFARLWKRLVH 77
>pdb|9ICG|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp
(1 Millimolar) And Zncl2 (1 Millimolar)
pdb|9ICH|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dgtp
(1 Millimolar) And Zncl2 (1 Millimolar)
pdb|9ICI|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dttp
(1 Millimolar) And Zncl2 (1 Millimolar)
pdb|9ICJ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna
pdb|9ICK|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Artificial Mother Liquor
pdb|9ICL|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Pyrophosphate And Mncl2
pdb|9ICM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Double Stranded Dna (No 5'-Phosphate)
pdb|9ICN|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2',3'-
Dideoxycytidine-5'-Triphosphate, Soaked In The Presence
Of Ddctp And Mgcl2
pdb|9ICO|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Dttp And Mgcl2
pdb|9ICP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of
Pyrophosphate (1 Millimolar) And Mgcl2 (5 Millimolar)
pdb|9ICQ|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Datp (1
Millimolar) And Mncl2 (5 Millimolar)
pdb|9ICR|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'-
Deoxycytidine-5'-Triphosphate, Soaked In The Presence Of
Dctp And Mncl2
pdb|9ICS|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2',3'-
Dideoxycytidine-5'-Triphosphate, Soaked In The Presence
Of Ddctp And Mncl2
pdb|9ICT|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'-
Deoxyguanosine-5'-Triphosphate, Soaked In The Presence
Of Dgtp And Mncl2
pdb|9ICU|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Dttp (1
Millimolar) And Mncl2 (5 Millimolar)
pdb|9ICV|A Chain A, Dna Polymerase Beta (e.c.2.7.7.7)/dna Complex + 2'-
Deoxyadenosine-5'-triphosphate, Soaked In The Presence
Of Datp And Zncl2
pdb|9ICW|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Native Structure
pdb|9ICX|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Six Base Pairs Of Dna (non Gapped Dna Only)
pdb|9ICY|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7) Complexed With Seven
Base Pairs Of Dna (Non Gapped Dna Only)
pdb|8ICB|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of
Artificial Mother Liquor
pdb|8ICC|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna (no 5'-phosphate)
pdb|8ICE|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Cdcl2 (1 Millimolar)
pdb|8ICF|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(10 Millimolar) And Mgcl2 (50 Millimolar)
pdb|8ICG|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Mgcl2 (5 Millimolar)
pdb|8ICH|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp
(1 Millimolar) And Mgcl2 (5 Millimolar)
pdb|8ICI|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dgtp
(1 Millimolar) And Mgcl2 (5 Millimolar)
pdb|8ICJ|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + THYMIDINE-
5'-Triphosphate, Soaked In The Presence Of Dttp And
Mgcl2
pdb|8ICK|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar), Mgcl2 (5 Millimolar), And Mncl2 (5
Millimolar)
pdb|8ICL|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Nicl2 (5 Millimolar)
pdb|8ICM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar), Mncl2 (5 Millimolar), And Ammonium
Sulfate (75 Millimolar)
pdb|8ICN|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Atp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|8ICO|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of
Azt-Tp (1 Millimolar) And Mncl2 (5 Millimolar)
pdb|8ICP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|8ICQ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Of
Datp (0.1 Millimolar) And Mncl2 (0.5 Millimolar)
pdb|8ICR|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|8ICS|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|8ICT|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|8ICU|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Ddatp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|8ICV|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dgtp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|8ICW|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dttp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|8ICX|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dttp
(1 Millimolar) And Mncl2 (5 Millimolar)
pdb|8ICY|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + THYMIDINE-
5'-Triphosphate, Soaked In The Presence Of Dttp And
Mncl2
pdb|8ICZ|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Of
Datp (1 Millimolar), Mncl2 (5 Millimolar), And Lithium
Sulfate (75 Millimolar)
pdb|9ICA|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'-
Deoxyadenosine-5'-O-(1-Thiotriphosphate), Soaked In The
Presence Of Datp(Alpha)s And Mncl2
pdb|9ICB|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'-
Deoxyadenosine-5'-Triphosphate, Soaked In The Presence
Of Datp And Cocl2
pdb|9ICC|A Chain A, Dna Polymerase Beta (e.c.2.7.7.7)/dna Complex + 2'-
Deoxyadenosine-5'-triphosphate, Soaked In The Presence
Of Datp And Crcl3
pdb|9ICE|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Cucl2 (0.1 Millimolar)
pdb|9ICF|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'-
Deoxyadenosine-5'-Triphosphate, Soaked In The Presence
Of Datp And Zncl2
pdb|1ZQQ|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(15 Millimolar) And Nacl (15 Millimolar)
pdb|1ZQR|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Nicl2
pdb|1ZQS|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Tlcl
(0.5 Millimolar)
pdb|1ZQT|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(0.01 Millimolar) And Zncl2 (0.02 Millimolar)
pdb|7ICE|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Cacl2
pdb|7ICF|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Cdcl2
(0.1 Millimolar) (Four-Day Soak)
pdb|7ICG|A Chain A, Dna Polymerase Beta (e.c.2.7.7.7)/dna Complex, Soaked In
The Presence Of Cdcl2
pdb|7ICH|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Cocl2
pdb|7ICI|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Crcl3
(0.1 Millimolar)
pdb|7ICJ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Cucl2
(0.1 Millimolar)
pdb|7ICK|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Mgcl2
pdb|7ICL|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(0.1 Millimolar)
pdb|7ICM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(1.0 Millimolar)
pdb|7ICN|A Chain A, Dna Polymerase Beta (e.c.2.7.7.7)/dna Complex, Soaked In
The Presence Of Nicl2
pdb|7ICO|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Zncl2
pdb|7ICP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Zncl2
(0.01 Millimolar)
pdb|7ICQ|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Zncl2
pdb|7ICR|A Chain A, Dna Polymerase Beta (e.c.2.7.7.7)/dna Complex, Soaked In
The Presence Of Zncl2
pdb|7ICS|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Zncl2
pdb|7ICT|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Zncl2 And Mgcl2
pdb|7ICU|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Cdcl2
(0.1 Millimolar)
pdb|7ICV|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(0.1 Millimolar) And In The Absence Of Nacl
pdb|8ICA|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Cacl2 (5 Millimolar)
pdb|1ZQA|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl
(150 Millimolar) At Ph 7.5
pdb|1ZQB|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Bacl2
(150 Millimolar)
pdb|1ZQC|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2
(15 Millimolar)
pdb|1ZQD|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2
(150 Millimolar)
pdb|1ZQE|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Crcl3
(saturated Solution)
pdb|1ZQF|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cscl
(150 Millimolar)
pdb|1ZQG|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of A
Sodium-Free Artificial Mother Liquor At Ph 6.5
pdb|1ZQH|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of A
Sodium-Free Artificial Mother Liquor At Ph 7.5
pdb|1ZQI|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl
(150 Millimolar)
pdb|1ZQJ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2
(15 Millimolar) And Mgcl2 (15 Millimolar)
pdb|1ZQK|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl
(75 Millimolar) And Mgcl2 (75 Millimolar)
pdb|1ZQL|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(15 Millimolar) And Mgcl2 (15 Millimolar)
pdb|1ZQM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(15 Millimolar)
pdb|1ZQN|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Bacl2
(15 Millimolar) And Nacl (15 Millimolar)
pdb|1ZQO|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2
(15 Millimolar) And Nacl (15 Millimolar)
pdb|1ZQP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl
(75 Millimolar) And Nacl (75 Millimolar)
pdb|1BPX|A Chain A, Dna Polymerase BetaDNA COMPLEX
pdb|1BPY|A Chain A, Human Dna Polymerase Beta Complexed With Gapped Dna And
Ddctp
pdb|1BPZ|A Chain A, Human Dna Polymerase Beta Complexed With Nicked Dna
pdb|1MQ2|A Chain A, Human Dna Polymerase Beta Complexed With Gapped Dna
Containing An 8-Oxo-7,8-Dihydro-Guanine And Damp
pdb|1MQ3|A Chain A, Human Dna Polymerase Beta Complexed With Gapped Dna
Containing An 8-Oxo-7,8-Dihydro-Guanine Template Paired
With Dctp
pdb|1TV9|A Chain A, Human Dna Polymerase Beta Complexed With Nicked Dna
Containing A Mismatched Template Adenine And Incoming
Cytidine
pdb|1TVA|A Chain A, Human Dna Polymerase Beta Complexed With Nicked Dna
Containing A Mismatched Template Thymidine And Incoming
Cytidine
pdb|1ZJM|A Chain A, Human Dna Polymerase Beta Complexed With Dna Containing An
A-A Mismatched Primer Terminus
pdb|1ZJN|A Chain A, Human Dna Polymerase Beta Complexed With Dna Containing An
A-A Mismatched Primer Terminus With Dgtp
pdb|2FMP|A Chain A, Dna Polymerase Beta With A Terminated Gapped Dna Substrate
And Ddctp With Sodium In The Catalytic Site
pdb|2FMQ|A Chain A, Sodium In Active Site Of Dna Polymerase Beta
pdb|2FMS|A Chain A, Dna Polymerase Beta With A Gapped Dna Substrate And
Dumpnpp With Magnesium In The Catalytic Site
pdb|2I9G|A Chain A, Dna Polymerase Beta With A Benzo[c]phenanthrene Diol
Epoxide Adducted Guanine Base
pdb|2ISO|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta, Gamma-
Difluoromethylene Triphosphate
pdb|2ISP|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta, Gamma-
Methylene Triphosphate
pdb|2P66|A Chain A, Human Dna Polymerase Beta Complexed With Tetrahydrofuran
(abasic Site) Containing Dna
pdb|2PXI|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta, Gamma-
Monofluoromethylene Triphosphate
pdb|3C2K|A Chain A, Dna Polymerase Beta With A Gapped Dna Substrate And
Dumpnpp With Manganese In The Active Site
pdb|3C2L|A Chain A, Ternary Complex Of Dna Polymerase Beta With A C:dapcpp
Mismatch In The Active Site
pdb|3C2M|A Chain A, Ternary Complex Of Dna Polymerase Beta With A G:dapcpp
Mismatch In The Active Site
pdb|3ISB|A Chain A, Binary Complex Of Human Dna Polymerase Beta With A Gapped
Dna
pdb|3ISC|A Chain A, Binary Complex Of Human Dna Polymerase Beta With An Abasic
Site (Thf) In The Gapped Dna
pdb|3ISD|A Chain A, Ternary Complex Of Human Dna Polymerase Beta With An
Abasic Site (Thf): Dapcpp Mismatch
pdb|3JPN|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Dichloro Methyl Triphosphate
pdb|3JPO|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monochloromethy Triphosphate
pdb|3JPP|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monomethyl Meth Triphosphate
pdb|3JPQ|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monobromo Methy Triphosphate
pdb|3JPR|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Dimethyl Methyl Triphosphate
pdb|3JPS|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Fluoro Methyl M Triphosphate
pdb|3JPT|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Fluoro Chloro M Triphosphate
pdb|3MBY|A Chain A, Ternary Complex Of Dna Polymerase Beta With Template Base
A And 8oxodgtp In The Active Site With A Dideoxy
Terminated Primer
pdb|3LK9|A Chain A, Dna Polymerase Beta With A Gapped Dna Substrate And
Dtmp(Cf2)p(Cf2)p
pdb|3RH4|A Chain A, Dna Polymerase Beta With A Dideoxy-Terminated Primer With
An Incoming Ribonucleotide (Rctp)
pdb|3RJE|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Gapped Dna
Containing 8odg At Template Position
pdb|3RJF|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Gapped Dna
Containing (Syn)8odg At Template Position Paired With
Non-Hydrolyzable Datp Analog (Dapcpp)
pdb|3RJG|A Chain A, Binary Complex Of Dna Polymerase Beta With A Gapped Dna
Containing 8odg:da Base-Pair At Primer Terminus
pdb|3RJH|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Gapped Dna
Containing (Syn)8odg:da At Primer Terminus And
Dg:dcmp(Cf2)ppin The Active Site
pdb|3RJI|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Gapped Dna
Containing 8odg At Template Position Paired With
Non-Hydrolyzable Dctp Analog (Dcmp(Cf2)pp)
pdb|3RJJ|A Chain A, Ternary Complex Crystal Structure Of Dna Polymerase Beta
With Template 8odg Provides Insight Into Mutagenic
Lesion Bypass
pdb|3RJK|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Gapped Dna
Containing 8odg:dc Base Pair At Primer Terminus And
Dg:dcmp(Cf2)pp In The Active Site
pdb|3TFR|A Chain A, Ternary Complex Structure Of Dna Polymerase Beta With A
Gapped Dna Substrate And A, B Damp(Cf2)pp In The Active
Site
pdb|3TFS|A Chain A, Ternary Complex Structure Of Dna Polymerase Beta With A
Gapped Dna Substrate And A, B Damp(Cfh)pp In The Active
Site: Stereoselective Binding Of (S) Isomer
pdb|4DO9|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monofluoromethylene Triphosphate: Stereoselective
Binding Of R-Isomer
pdb|4DOA|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monofluoromethylene Triphosphate: Non-Interactive
Binding Of S-Isomer
pdb|4DOB|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monochlororomethylene Triphosphate:
Stereoselective Binding Of R-Isomer
pdb|4DOC|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monochlororomethylene Triphosphate:binding Of
S-Isomer
Length = 335
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 22/125 (17%)
Query: 51 KISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDI 110
KI QD+ +S+++ L + +S + + +F+D E I+ + D+ N K N
Sbjct: 87 KIRQDDTSSSINFLTR-VSGIGPSAARKFVD----------EGIKTLEDLRKNEDKLNHH 135
Query: 111 QGAFQLFDLNGDKKISAEELMEV-------LRKMGEKYSLDSCRKMIRGVDADGDGLIDM 163
Q + + +K+I EE++++ ++K+ +Y C RG ++ G DM
Sbjct: 136 QRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSG----DM 191
Query: 164 DEFMT 168
D +T
Sbjct: 192 DVLLT 196
>pdb|1E6Y|C Chain C, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
pdb|1E6Y|F Chain F, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
Length = 247
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 34 VQEMRQVFDKFDTNK--DGKISQDEYNSALSV-----LGKGISKAEMAKSFRFIDTDKDG 86
+QE +FD D + +G I D+ A+ + LGK +S E AK D
Sbjct: 162 LQEDGVMFDMLDRRRLENGTIIMDKDQVAIPLDRKVDLGKPMSSEEAAKRTTIYRVDNVA 221
Query: 87 YIDFKEFIEMMHDMGDNRVK 106
+ D E +E +H + D R K
Sbjct: 222 FRDDAEVVEWVHRIFDQRTK 241
>pdb|3RH5|A Chain A, Dna Polymerase Beta Mutant (Y271) With A
Dideoxy-Terminated Primer With An Incoming
Deoxynucleotide (Dctp)
pdb|3RH6|A Chain A, Dna Polymerase Beta Mutant (Y271) With A
Dideoxy-Terminated Primer With An Incoming
Ribonucleotide (Rctp)
Length = 335
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 22/125 (17%)
Query: 51 KISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDI 110
KI QD+ +S+++ L + +S + + +F+D E I+ + D+ N K N
Sbjct: 87 KIRQDDTSSSINFLTR-VSGIGPSAARKFVD----------EGIKTLEDLRKNEDKLNHH 135
Query: 111 QGAFQLFDLNGDKKISAEELMEV-------LRKMGEKYSLDSCRKMIRGVDADGDGLIDM 163
Q + + +K+I EE++++ ++K+ +Y C RG ++ G DM
Sbjct: 136 QRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSG----DM 191
Query: 164 DEFMT 168
D +T
Sbjct: 192 DVLLT 196
>pdb|4F5N|A Chain A, Open Ternary Complex Of R283k Dna Polymerase Beta With A
Metal Free Dctp Analog
pdb|4F5O|A Chain A, Open Ternary Complex Of R283k Dna Polymerase Beta With A
One Metal Bound Dctp Analog
pdb|4F5P|A Chain A, Open Ternary Mismatch Complex Of R283k Dna Polymerase Beta
With A Datp Analog
pdb|4F5Q|A Chain A, Closed Ternary Complex Of R283k Dna Polymerase Beta
pdb|4F5R|A Chain A, Open And Closed Ternary Complex Of R283k Dna Polymerase
Beta With A Dctp Analog In The Same Asymmetric Unit
pdb|4F5R|B Chain B, Open And Closed Ternary Complex Of R283k Dna Polymerase
Beta With A Dctp Analog In The Same Asymmetric Unit
pdb|4GXI|A Chain A, R283k Dna Polymerase Beta Binary Complex With A Templating
8og
pdb|4GXJ|A Chain A, R283k Dna Polymerase Beta Ternary Complex With A
Templating 8og And Incoming Dctp Analog
pdb|4GXK|A Chain A, R283k Dna Polymerase Beta Ternary Complex With A
Templating 8og And Incoming Datp Analog
Length = 335
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 22/125 (17%)
Query: 51 KISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDI 110
KI QD+ +S+++ L + +S + + +F+D E I+ + D+ N K N
Sbjct: 87 KIRQDDTSSSINFLTR-VSGIGPSAARKFVD----------EGIKTLEDLRKNEDKLNHH 135
Query: 111 QGAFQLFDLNGDKKISAEELMEV-------LRKMGEKYSLDSCRKMIRGVDADGDGLIDM 163
Q + + +K+I EE++++ ++K+ +Y C RG ++ G DM
Sbjct: 136 QRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSG----DM 191
Query: 164 DEFMT 168
D +T
Sbjct: 192 DVLLT 196
>pdb|3GDX|A Chain A, Dna Polymerase Beta With A Gapped Dnd Substrate And
Dtmp(Cf2)pp
Length = 326
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 22/125 (17%)
Query: 51 KISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDI 110
KI QD+ +S+++ L + +S + + +F+D E I+ + D+ N K N
Sbjct: 78 KIRQDDTSSSINFLTR-VSGIGPSAARKFVD----------EGIKTLEDLRKNEDKLNHH 126
Query: 111 QGAFQLFDLNGDKKISAEELMEV-------LRKMGEKYSLDSCRKMIRGVDADGDGLIDM 163
Q + + +K+I EE++++ ++K+ +Y C RG ++ G DM
Sbjct: 127 QRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSG----DM 182
Query: 164 DEFMT 168
D +T
Sbjct: 183 DVLLT 187
>pdb|3AAJ|A Chain A, Crystal Structure Of Ca2+-Bound Form Of
Des3-23alg-2deltagf122
pdb|3AAJ|B Chain B, Crystal Structure Of Ca2+-Bound Form Of
Des3-23alg-2deltagf122
Length = 167
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 43 KFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYI--DFKEFIEMMHDM 100
KFD G+I+ D++ VL + + FR DTD+DG+I +++++ M+ +
Sbjct: 113 KFDRQGRGQIAFDDFIQGCIVLQR------LTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 166
>pdb|3AKA|A Chain A, Structural Basis For Prokaryotic Calcium-Mediated
Regulation By A Streptomyces Coelicolor Calcium-Binding
Protein
Length = 166
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 23/157 (14%)
Query: 41 FDKFDTNKDGKISQDEYNSALSVL------------GK---GISKAEMAKSFRFIDTDKD 85
F FD + +G I + +++ A L G+ G ++A D D D
Sbjct: 10 FTTFDQDGNGHIDRSDFSGAAKALLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDGD 69
Query: 86 GYIDFKEFI----EMMHDMGDN--RVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGE 139
I +EF+ + + D D + + + A + D +GD ++ + L G
Sbjct: 70 QRITREEFVTGAVKRLRDKPDRFAEIARPFLHAALGVADTDGDGAVTVADTARALTAFGV 129
Query: 140 KYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRNVKV 176
L R+ +D DGDG + E + R V
Sbjct: 130 PEDL--ARQAAAALDTDGDGKVGETEIVPAFARYFTV 164
>pdb|1WY6|A Chain A, Crystal Structure Of Hypothetical Protein [st1625p] From
Hyperthermophilic Archaeon Sulfolobus Tokodaii
Length = 172
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 12/85 (14%)
Query: 68 ISKAEMAKSFRFIDTDK---DGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKK 124
I K+E+ + + +D K DGYID E ++++ + + K+ + + F N +
Sbjct: 2 IVKSEIIR--KLMDAKKFLLDGYID--EGVKIVLE-----ITKSSTKSEYNWFICNLLES 52
Query: 125 ISAEELMEVLRKMGEKYSLDSCRKM 149
I + +VL K+G + LD C+ +
Sbjct: 53 IDCRYMFQVLDKIGSYFDLDKCQNL 77
>pdb|1E8A|A Chain A, The Three-Dimensional Structure Of Human S100a12
pdb|1E8A|B Chain B, The Three-Dimensional Structure Of Human S100a12
pdb|1GQM|A Chain A, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|B Chain B, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|C Chain C, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|D Chain D, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|E Chain E, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|F Chain F, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|G Chain G, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|H Chain H, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|I Chain I, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|J Chain J, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|K Chain K, The Structure Of S100a12 In A Hexameric Form
pdb|1GQM|L Chain L, The Structure Of S100a12 In A Hexameric Form
Length = 91
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 123 KKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRNVKVA 177
K++ +EL ++ + +K +D ++ +G+DA+ D +D EF++++ +K A
Sbjct: 33 KQLLTKELANTIKNIKDKAVID---EIFQGLDANQDEQVDFQEFISLVAIALKAA 84
>pdb|1G33|A Chain A, Crystal Structure Of Rat Parvalbumin Without The
N-Terminal Domain
Length = 73
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 108 NDIQGAFQLFDLNGDKKISAEELMEVLRKM---GEKYSLDSCRKMIRGVDADGDGLIDMD 164
+D++ F + D + I +EL +L+ S + ++ D DGDG I ++
Sbjct: 5 DDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVE 64
Query: 165 EFMTMMTRN 173
EF T++ +
Sbjct: 65 EFSTLVAES 73
>pdb|1PSB|A Chain A, Solution Structure Of Calcium Loaded S100b Complexed To A
Peptide From N-Terminal Regulatory Domain Of Ndr Kinase.
pdb|1PSB|B Chain B, Solution Structure Of Calcium Loaded S100b Complexed To A
Peptide From N-Terminal Regulatory Domain Of Ndr Kinase
Length = 91
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 123 KKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMT 171
K++ EL L ++ E+ +D K++ +D+DGDG D EFM +
Sbjct: 33 KELINNELSHFLEEIKEQEVVD---KVMETLDSDGDGECDFQEFMAFVA 78
>pdb|1ODB|A Chain A, The Crystal Structure Of Human S100a12 - Copper Complex
pdb|1ODB|B Chain B, The Crystal Structure Of Human S100a12 - Copper Complex
pdb|1ODB|C Chain C, The Crystal Structure Of Human S100a12 - Copper Complex
pdb|1ODB|D Chain D, The Crystal Structure Of Human S100a12 - Copper Complex
pdb|1ODB|E Chain E, The Crystal Structure Of Human S100a12 - Copper Complex
pdb|1ODB|F Chain F, The Crystal Structure Of Human S100a12 - Copper Complex
pdb|2WC8|A Chain A, S100a12 Complex With Zinc In The Absence Of Calcium
pdb|2WC8|B Chain B, S100a12 Complex With Zinc In The Absence Of Calcium
pdb|2WC8|C Chain C, S100a12 Complex With Zinc In The Absence Of Calcium
pdb|2WC8|D Chain D, S100a12 Complex With Zinc In The Absence Of Calcium
pdb|2WCB|A Chain A, S100a12 Complex With Zinc In The Absence Of Calcium
pdb|2WCB|B Chain B, S100a12 Complex With Zinc In The Absence Of Calcium
pdb|2WCF|A Chain A, Calcium-Free (Apo) S100a12
pdb|2WCF|B Chain B, Calcium-Free (Apo) S100a12
pdb|2WCF|C Chain C, Calcium-Free (Apo) S100a12
pdb|2WCF|D Chain D, Calcium-Free (Apo) S100a12
pdb|2WCF|E Chain E, Calcium-Free (Apo) S100a12
pdb|2WCF|F Chain F, Calcium-Free (Apo) S100a12
Length = 95
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 123 KKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRNVKVA 177
K++ +EL ++ + +K +D ++ +G+DA+ D +D EF++++ +K A
Sbjct: 37 KQLLTKELANTIKNIKDKAVID---EIFQGLDANQDEQVDFQEFISLVAIALKAA 88
>pdb|1MHO|A Chain A, The 2.0 A Structure Of Holo S100b From Bovine Brain
Length = 88
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 123 KKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMT 171
K++ EL L ++ E+ +D K++ +D+DGDG D EFM +
Sbjct: 33 KELINNELSHFLEEIKEQEVVD---KVMETLDSDGDGECDFQEFMAFVA 78
>pdb|1CFP|A Chain A, S100b (S100beta) Nmr Data Was Collected From A Sample Of
Calcium Free Protein At Ph 6.3 And A Temperature Of 311
K And 1.7-6.9 Mm Concentration, 25 Structures
pdb|1CFP|B Chain B, S100b (S100beta) Nmr Data Was Collected From A Sample Of
Calcium Free Protein At Ph 6.3 And A Temperature Of 311
K And 1.7-6.9 Mm Concentration, 25 Structures
pdb|3CR2|A Chain A, X-ray Structure Of Bovine Zn(2+),ca(2+)-s100b
pdb|3CR5|X Chain X, X-Ray Structure Of Bovine Pnt-Zn(2+),Ca(2+)-S100b
pdb|3CR4|X Chain X, X-Ray Structure Of Bovine Pnt,Ca(2+)-S100b
pdb|3GK1|A Chain A, X-Ray Structure Of Bovine Sbi132,Ca(2+)-S100b
pdb|3GK2|A Chain A, X-Ray Structure Of Bovine Sbi279,Ca(2+)-S100b
pdb|3GK4|X Chain X, X-Ray Structure Of Bovine Sbi523,Ca(2+)-S100b
pdb|3IQO|A Chain A, 1.5 Angstrom X-ray Structure Of Bovine Ca(2+)-s100b
pdb|3IQO|B Chain B, 1.5 Angstrom X-ray Structure Of Bovine Ca(2+)-s100b
pdb|3IQQ|A Chain A, X-Ray Structure Of Bovine Trtk12-Ca(2+)-S100b
pdb|3LLE|A Chain A, X-Ray Structure Of Bovine Sc0322,Ca(2+)-S100b
pdb|3LLE|B Chain B, X-Ray Structure Of Bovine Sc0322,Ca(2+)-S100b
Length = 92
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 123 KKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMT 171
K++ EL L ++ E+ +D K++ +D+DGDG D EFM +
Sbjct: 34 KELINNELSHFLEEIKEQEVVD---KVMETLDSDGDGECDFQEFMAFVA 79
>pdb|3LK0|A Chain A, X-Ray Structure Of Bovine Sc0067,Ca(2+)-S100b
pdb|3LK0|B Chain B, X-Ray Structure Of Bovine Sc0067,Ca(2+)-S100b
pdb|3LK0|C Chain C, X-Ray Structure Of Bovine Sc0067,Ca(2+)-S100b
pdb|3LK0|D Chain D, X-Ray Structure Of Bovine Sc0067,Ca(2+)-S100b
pdb|3LK1|A Chain A, X-Ray Structure Of Bovine Sc0322,Ca(2+)-S100b
Length = 90
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 123 KKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMT 171
K++ EL L ++ E+ +D K++ +D+DGDG D EFM +
Sbjct: 34 KELINNELSHFLEEIKEQEVVD---KVMETLDSDGDGECDFQEFMAFVA 79
>pdb|4FQO|A Chain A, Crystal Structure Of Calcium-loaded S100b Bound To Sbi4211
Length = 89
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 123 KKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMT 171
K++ EL L ++ E+ +D K++ +D+DGDG D EFM +
Sbjct: 34 KELINNELSHFLEEIKEQEVVD---KVMETLDSDGDGECDFQEFMAFVA 79
>pdb|3AKB|A Chain A, Structural Basis For Prokaryotic Calcium-Mediated
Regulation By A Streptomyces Coelicolor Calcium-Binding
Protein
Length = 166
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 110 IQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTM 169
+ A + D +GD ++ + L G L R+ +D DGDG + E +
Sbjct: 100 LHAALGVADTDGDGAVTVADTARALTAFGVPEDL--ARQAAAALDTDGDGKVGETEIVPA 157
Query: 170 MTRNVKV 176
R V
Sbjct: 158 FARYFTV 164
>pdb|2K7O|A Chain A, Ca2+-s100b, Refined With Rdcs
pdb|2K7O|B Chain B, Ca2+-s100b, Refined With Rdcs
Length = 91
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 123 KKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMT 171
K++ EL L ++ E+ +D K++ +D DGDG D EFM ++
Sbjct: 33 KELINNELSHFLEEIKEQEVVD---KVMETLDEDGDGECDFQEFMAFVS 78
>pdb|3H4S|E Chain E, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 135
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 139 EKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172
E S + + M+R D DGDG ++ EF +M R
Sbjct: 72 EGMSKEDAQGMVREGDLDGDGALNQTEFCVLMVR 105
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 89 DFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLN------GDKKISAEELMEVLRKMGEKYS 142
+F +++E +++ V KN G DL+ G+K + +E+ R GE Y
Sbjct: 407 EFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTV-VNNAIEISRSWGESYF 465
Query: 143 LDSCRKMIRG 152
L + ++IR
Sbjct: 466 LSNYERLIRA 475
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 89 DFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLN------GDKKISAEELMEVLRKMGEKYS 142
+F +++E +++ V KN G DL+ G+K + +E+ R GE Y
Sbjct: 407 EFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTV-VNNAIEISRSWGESYF 465
Query: 143 LDSCRKMIRG 152
L + ++IR
Sbjct: 466 LSNYERLIRA 475
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 89 DFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLN------GDKKISAEELMEVLRKMGEKYS 142
+F +++E +++ V KN G DL+ G+K + +E+ R GE Y
Sbjct: 407 EFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTV-VNNAIEISRSWGESYF 465
Query: 143 LDSCRKMIRG 152
L + ++IR
Sbjct: 466 LSNYERLIRA 475
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 89 DFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLN------GDKKISAEELMEVLRKMGEKYS 142
+F +++E +++ V KN G DL+ G+K + +E+ R GE Y
Sbjct: 410 EFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTV-VNNAIEISRSWGESYF 468
Query: 143 LDSCRKMIRG 152
L + ++IR
Sbjct: 469 LSNYERLIRA 478
>pdb|1BOD|A Chain A, The Solution Structures Of Mutant Calbindin D9k's, As
Determined By Nmr, Show That The Calcium Binding Site
Can Adopt Different Folds
Length = 74
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 14/67 (20%)
Query: 35 QEMRQVFDKFDTNKDGK--------ISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDG 86
+E++ +F+K+D DG+ + Q E+ S L KG+S + + F +D + DG
Sbjct: 5 EELKGIFEKYDKEGDGQLSKEELKLLLQTEFPSLL----KGMST--LDELFEELDKNGDG 58
Query: 87 YIDFKEF 93
+ F+EF
Sbjct: 59 EVSFEEF 65
>pdb|1NSH|A Chain A, Solution Structure Of Rabbit Apo-S100a11 (19 Models)
pdb|1NSH|B Chain B, Solution Structure Of Rabbit Apo-S100a11 (19 Models)
Length = 101
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 17/85 (20%)
Query: 25 SVPRASRSNVQEMRQVFDKFDTNKDGK---ISQDEY----NSALSVLGK-----GISKAE 72
S P + ++ + VF K+ KDG +S+ E+ N+ L+ K G+
Sbjct: 1 SRPTETERCIESLIAVFQKY-AGKDGHSVTLSKTEFLSFMNTELAAFTKNQKDPGVLDRM 59
Query: 73 MAKSFRFIDTDKDGYIDFKEFIEMM 97
M K +D + DG +DF+EF+ ++
Sbjct: 60 MKK----LDLNSDGQLDFQEFLNLI 80
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 89 DFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLN------GDKKISAEELMEVLRKMGEKYS 142
+F +++E +++ V KN G DL+ G+K + +E+ R GE Y
Sbjct: 413 EFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTV-VNNAIEISRSWGESYF 471
Query: 143 LDSCRKMIRG 152
L + ++IR
Sbjct: 472 LSNYERLIRA 481
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 89 DFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLN------GDKKISAEELMEVLRKMGEKYS 142
+F +++E +++ V KN G DL+ G+K + +E+ R GE Y
Sbjct: 413 EFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTV-VNNAIEISRSWGESYF 471
Query: 143 LDSCRKMIRG 152
L + ++IR
Sbjct: 472 LSNYERLIRA 481
>pdb|1K2H|A Chain A, Three-Dimensional Solution Structure Of Apo-S100a1.
pdb|1K2H|B Chain B, Three-Dimensional Solution Structure Of Apo-S100a1.
pdb|1ZFS|A Chain A, Solution Structure Of S100a1 Bound To Calcium
pdb|1ZFS|B Chain B, Solution Structure Of S100a1 Bound To Calcium
pdb|2K2F|A Chain A, Solution Structure Of Ca2+-S100a1-Ryrp12
pdb|2K2F|B Chain B, Solution Structure Of Ca2+-S100a1-Ryrp12
pdb|2KBM|A Chain A, Ca-S100a1 Interacting With Trtk12
pdb|2KBM|B Chain B, Ca-S100a1 Interacting With Trtk12
Length = 93
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
Query: 121 GDK-KISAEELMEVLRKMGEKY-----SLDSCRKMIRGVDADGDGLIDMDEFMTMMT 171
GDK K+S +EL ++L+ + D+ K+++ +D +GDG +D EF+ ++
Sbjct: 23 GDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLVA 79
>pdb|1SYM|A Chain A, 3-D Solution Structure Of Reduced Apo-S100b From Rat, Nmr,
20 Structures
pdb|1SYM|B Chain B, 3-D Solution Structure Of Reduced Apo-S100b From Rat, Nmr,
20 Structures
pdb|1QLK|A Chain A, Solution Structure Of Ca(2+)-Loaded Rat S100b (Betabeta)
Nmr, 20 Structures
pdb|1QLK|B Chain B, Solution Structure Of Ca(2+)-Loaded Rat S100b (Betabeta)
Nmr, 20 Structures
pdb|1B4C|A Chain A, Solution Structure Of Rat Apo-S100b Using Dipolar
Couplings
pdb|1B4C|B Chain B, Solution Structure Of Rat Apo-S100b Using Dipolar
Couplings
pdb|1DT7|A Chain A, Solution Structure Of The C-Terminal Negative Regulatory
Domain Of P53 In A Complex With Ca2+-Bound S100b(Bb)
pdb|1DT7|B Chain B, Solution Structure Of The C-Terminal Negative Regulatory
Domain Of P53 In A Complex With Ca2+-Bound S100b(Bb)
pdb|1MWN|A Chain A, Solution Nmr Structure Of S100b Bound To The High-Affinity
Target Peptide Trtk-12
pdb|1MWN|B Chain B, Solution Nmr Structure Of S100b Bound To The High-Affinity
Target Peptide Trtk-12
pdb|1XYD|A Chain A, Nmr Solution Structure Of Rat Zinc-Calcium-S100b, 20
Structures
pdb|1XYD|B Chain B, Nmr Solution Structure Of Rat Zinc-Calcium-S100b, 20
Structures
Length = 92
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 123 KKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMT 171
K++ EL L ++ E+ +D K++ +D DGDG D EFM ++
Sbjct: 34 KELINNELSHFLEEIKEQEVVD---KVMETLDEDGDGECDFQEFMAFVS 79
>pdb|1BU3|A Chain A, Refined Crystal Structure Of Calcium-Bound Silver Hake (Pi
4.2) Parvalbumin At 1.65 A
Length = 109
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 108 NDIQGAFQLFDLNGDKKISAEEL---MEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMD 164
+DI+ AF + D + I +EL ++V + + ++ D+DGDG I +D
Sbjct: 42 DDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVD 101
Query: 165 EFMTMM 170
E+ ++
Sbjct: 102 EWAALV 107
>pdb|1QLS|A Chain A, S100c (S100a11),Or Calgizzarin, In Complex With Annexin
I N-Terminus
Length = 99
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 17/83 (20%)
Query: 27 PRASRSNVQEMRQVFDKFDTNKDG---KISQDEY----NSALSVLGK-----GISKAEMA 74
P + ++ + +F K +DG KIS+ E+ N+ L+ + G+ M
Sbjct: 5 PTETERCIESLIAIFQK-HAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMK 63
Query: 75 KSFRFIDTDKDGYIDFKEFIEMM 97
K +D D DG +DF+EF+ ++
Sbjct: 64 K----LDLDSDGQLDFQEFLNLI 82
>pdb|2WCE|A Chain A, Calcium-Free (Apo) S100a12
pdb|2WCE|B Chain B, Calcium-Free (Apo) S100a12
Length = 95
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 123 KKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRNVKVA 177
K++ +EL ++ + +K +D ++ +G+DA+ D +D EF++ + +K A
Sbjct: 37 KQLLTKELANTIKNIKDKAVID---EIFQGLDANQDEQVDFQEFISXVAIALKAA 88
>pdb|1CDP|A Chain A, Restrained Least Squares Refinement Of Native (Calcium)
And Cadmium-Substituted Carp Parvalbumin Using X-Ray
Crystallographic Data At 1.6-Angstroms Resolution
pdb|4CPV|A Chain A, Refined Crystal Structure Of Calcium-Liganded Carp
Parvalbumin 4.25 At 1.5-Angstroms Resolution
pdb|5CPV|A Chain A, Restrained Least Squares Refinement Of Native (Calcium)
And Cadmium-Substituted Carp Parvalbumin Using X-Ray
Crystallographic Data At 1.6-Angstroms Resolution
Length = 109
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 108 NDIQGAFQLFDLNGDKKISAEELMEVLRKM---GEKYSLDSCRKMIRGVDADGDGLIDMD 164
+D++ AF + D + I +EL L+ + + ++ D+DGDG I +D
Sbjct: 42 DDVKKAFAIIDQDKSGFIEEDELKLFLQNFKADARALTDGETKTFLKAGDSDGDGKIGVD 101
Query: 165 EFMTMM 170
EF ++
Sbjct: 102 EFTALV 107
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Alpha-D-Glucose
Length = 721
Score = 26.6 bits (57), Expect = 7.8, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 90 FKEFIEMMHDMGDNRVKK----NDIQGAFQLFDLNGDKKISAEELMEVLR--KMGEKYSL 143
F+ F+ GDN V++ ND+ + + +N +++ EE+ME L+ K+ E+ L
Sbjct: 235 FEGFVMSAWYAGDNPVEQLKAGNDLIMPGKAYQVNTERRDEIEEIMEALKEGKLSEEV-L 293
Query: 144 DSCRKMIRGV 153
D C + I V
Sbjct: 294 DECVRNILKV 303
>pdb|1MQ1|A Chain A, Ca2+-S100b-Trtk-12 Complex
pdb|1MQ1|B Chain B, Ca2+-S100b-Trtk-12 Complex
pdb|1UWO|A Chain A, Calcium Form Of Human S100b, Nmr, 20 Structures
pdb|1UWO|B Chain B, Calcium Form Of Human S100b, Nmr, 20 Structures
pdb|2PRU|A Chain A, Nmr Structure Of Human Apos100b At 10c
pdb|2PRU|B Chain B, Nmr Structure Of Human Apos100b At 10c
Length = 91
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 123 KKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMT 171
K++ EL L ++ E+ +D K++ +D DGDG D EFM +
Sbjct: 33 KELINNELSHFLEEIKEQEVVD---KVMETLDNDGDGECDFQEFMAFVA 78
>pdb|2H61|C Chain C, X-ray Structure Of Human Ca2+-loaded S100b
pdb|2H61|D Chain D, X-ray Structure Of Human Ca2+-loaded S100b
pdb|2H61|G Chain G, X-ray Structure Of Human Ca2+-loaded S100b
pdb|3D0Y|A Chain A, Crystal Structure Of S100b In The Calcium And Zinc Loaded
State At Ph 6.5
Length = 92
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 123 KKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMT 171
K++ EL L ++ E+ +D K++ +D DGDG D EFM +
Sbjct: 34 KELINNELSHFLEEIKEQEVVD---KVMETLDNDGDGECDFQEFMAFVA 79
>pdb|2QPT|A Chain A, Crystal Structure Of An Ehd Atpase Involved In Membrane
Remodelling
Length = 550
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 49 DGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMH 98
DGK+S + + + +G + + + + ++ D D+DG +D +EF H
Sbjct: 471 DGKLSGSKAKTWM--VGTKLPNSVLGRIWKLSDVDRDGMLDDEEFALASH 518
>pdb|2H61|A Chain A, X-ray Structure Of Human Ca2+-loaded S100b
pdb|2H61|B Chain B, X-ray Structure Of Human Ca2+-loaded S100b
pdb|2H61|E Chain E, X-ray Structure Of Human Ca2+-loaded S100b
pdb|2H61|F Chain F, X-ray Structure Of Human Ca2+-loaded S100b
pdb|2H61|H Chain H, X-ray Structure Of Human Ca2+-loaded S100b
pdb|3CZT|X Chain X, Crystal Structure Of S100b In The Calcium And Zinc Loaded
State At Ph 9
pdb|3D0Y|B Chain B, Crystal Structure Of S100b In The Calcium And Zinc Loaded
State At Ph 6.5
pdb|3D10|A Chain A, Crystal Structure Of S100b In The Calcium And Zinc Loaded
State At Ph 10.0
pdb|3D10|B Chain B, Crystal Structure Of S100b In The Calcium And Zinc Loaded
State At Ph 10.0
pdb|3HCM|A Chain A, Crystal Structure Of Human S100b In Complex With S45
pdb|3HCM|B Chain B, Crystal Structure Of Human S100b In Complex With S45
Length = 92
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 123 KKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMT 171
K++ EL L ++ E+ +D K++ +D DGDG D EFM +
Sbjct: 34 KELINNELSHFLEEIKEQEVVD---KVMETLDNDGDGECDFQEFMAFVA 79
>pdb|1RPL|A Chain A, 2.3 Angstroms Crystal Structure Of The Catalytic Domain Of
Dna Polymerase Beta
Length = 251
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 22/125 (17%)
Query: 51 KISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDI 110
KI QD+ +S+++ L + ++ + + + +D E I+ + D+ N K N
Sbjct: 3 KIRQDDTSSSINFLTR-VTGIGPSAARKLVD----------EGIKTLEDLRKNEDKLNHH 51
Query: 111 QGAFQLFDLNGDKKISAEELMEV-------LRKMGEKYSLDSCRKMIRGVDADGDGLIDM 163
Q + + +K+I EE++++ ++K+ +Y C RG ++ G DM
Sbjct: 52 QRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSG----DM 107
Query: 164 DEFMT 168
D +T
Sbjct: 108 DVLLT 112
>pdb|3UXO|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta Mutator I260q
Apoenzyme
pdb|3UXO|B Chain B, Crystal Structure Of Rat Dna Polymerase Beta Mutator I260q
Apoenzyme
pdb|3UXP|A Chain A, Co-Crystal Structure Of Rat Dna Polymerase Beta Mutator
I260q: Enzyme- Dna-Ddttp
pdb|3UXP|B Chain B, Co-Crystal Structure Of Rat Dna Polymerase Beta Mutator
I260q: Enzyme- Dna-Ddttp
Length = 335
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 22/125 (17%)
Query: 51 KISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDI 110
KI QD+ +S+++ L + ++ + + + +D E I+ + D+ N K N
Sbjct: 87 KIRQDDTSSSINFLTR-VTGIGPSAARKLVD----------EGIKTLEDLRKNEDKLNHH 135
Query: 111 QGAFQLFDLNGDKKISAEELMEV-------LRKMGEKYSLDSCRKMIRGVDADGDGLIDM 163
Q + + +K+I EE++++ ++K+ +Y C RG ++ G DM
Sbjct: 136 QRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSG----DM 191
Query: 164 DEFMT 168
D +T
Sbjct: 192 DVLLT 196
>pdb|1JN3|A Chain A, Fidelity Properties And Structure Of M282l Mutator Mutant
Of Dna Polymerase: Subtle Structural Changes Influence
The Mechanism Of Nucleotide Discrimination
Length = 251
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 22/125 (17%)
Query: 51 KISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDI 110
KI QD+ +S+++ L + ++ + + + +D E I+ + D+ N K N
Sbjct: 3 KIRQDDTSSSINFLTR-VTGIGPSAARKLVD----------EGIKTLEDLRKNEDKLNHH 51
Query: 111 QGAFQLFDLNGDKKISAEELMEV-------LRKMGEKYSLDSCRKMIRGVDADGDGLIDM 163
Q + + +K+I EE++++ ++K+ +Y C RG ++ G DM
Sbjct: 52 QRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSG----DM 107
Query: 164 DEFMT 168
D +T
Sbjct: 108 DVLLT 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,102,669
Number of Sequences: 62578
Number of extensions: 203867
Number of successful extensions: 2246
Number of sequences better than 100.0: 408
Number of HSP's better than 100.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 771
Number of HSP's gapped (non-prelim): 884
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)