Query 030421
Match_columns 177
No_of_seqs 138 out of 1209
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 13:28:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030421.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030421hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 5.4E-30 1.2E-34 168.2 16.8 151 23-174 8-158 (160)
2 KOG0027 Calmodulin and related 100.0 2.6E-27 5.6E-32 158.1 16.6 145 29-173 2-150 (151)
3 PTZ00183 centrin; Provisional 99.9 1.1E-24 2.4E-29 146.6 17.9 150 24-173 6-155 (158)
4 PTZ00184 calmodulin; Provision 99.9 1.1E-23 2.4E-28 140.4 17.0 145 28-172 4-148 (149)
5 KOG0028 Ca2+-binding protein ( 99.9 6.7E-24 1.5E-28 136.7 14.8 153 20-172 18-170 (172)
6 KOG0031 Myosin regulatory ligh 99.9 5.3E-23 1.2E-27 131.6 14.6 146 22-171 19-164 (171)
7 KOG0037 Ca2+-binding protein, 99.9 4.6E-22 1E-26 134.8 17.1 134 33-173 55-189 (221)
8 KOG0034 Ca2+/calmodulin-depend 99.9 7.6E-21 1.7E-25 129.2 14.9 144 27-174 25-177 (187)
9 KOG0030 Myosin essential light 99.9 4.5E-20 9.7E-25 116.4 13.5 143 29-172 5-151 (152)
10 KOG0044 Ca2+ sensor (EF-Hand s 99.8 2.4E-19 5.2E-24 121.9 13.0 144 29-173 20-176 (193)
11 KOG0036 Predicted mitochondria 99.8 1.5E-17 3.3E-22 122.3 15.1 139 29-173 8-147 (463)
12 PLN02964 phosphatidylserine de 99.6 7.2E-14 1.6E-18 110.7 13.6 121 25-150 133-271 (644)
13 KOG4223 Reticulocalbin, calume 99.5 1.5E-13 3.3E-18 98.7 9.6 138 32-169 160-302 (325)
14 cd05022 S-100A13 S-100A13: S-1 99.5 1.1E-13 2.3E-18 83.5 7.2 67 108-174 8-77 (89)
15 KOG0037 Ca2+-binding protein, 99.5 2.6E-12 5.6E-17 87.7 14.5 131 28-171 87-219 (221)
16 KOG4223 Reticulocalbin, calume 99.5 2.9E-13 6.2E-18 97.3 9.8 142 33-174 75-230 (325)
17 PF13499 EF-hand_7: EF-hand do 99.5 2.1E-13 4.6E-18 78.2 6.9 62 109-170 1-66 (66)
18 KOG0027 Calmodulin and related 99.4 2.3E-12 5E-17 86.0 11.3 104 70-174 7-115 (151)
19 KOG0038 Ca2+-binding kinase in 99.4 1.3E-12 2.9E-17 83.5 8.4 102 74-175 74-180 (189)
20 KOG0377 Protein serine/threoni 99.4 7.2E-12 1.6E-16 93.6 13.2 135 35-171 464-614 (631)
21 PTZ00183 centrin; Provisional 99.4 8.5E-12 1.8E-16 83.7 12.5 101 71-172 17-118 (158)
22 KOG0044 Ca2+ sensor (EF-Hand s 99.4 2.2E-12 4.8E-17 88.1 9.4 103 34-136 63-175 (193)
23 cd05027 S-100B S-100B: S-100B 99.4 2.1E-12 4.6E-17 78.0 8.1 66 108-173 8-80 (88)
24 COG5126 FRQ1 Ca2+-binding prot 99.4 3.3E-11 7.1E-16 79.7 12.0 99 72-172 21-120 (160)
25 PF13499 EF-hand_7: EF-hand do 99.3 6.3E-12 1.4E-16 72.1 7.3 62 36-97 1-66 (66)
26 cd05029 S-100A6 S-100A6: S-100 99.3 7.5E-12 1.6E-16 75.6 7.2 67 109-175 11-82 (88)
27 PTZ00184 calmodulin; Provision 99.3 6.4E-11 1.4E-15 78.6 12.3 100 72-172 12-112 (149)
28 cd05022 S-100A13 S-100A13: S-1 99.3 1.2E-11 2.7E-16 74.5 7.3 69 32-100 5-76 (89)
29 cd05031 S-100A10_like S-100A10 99.3 2.4E-11 5.2E-16 74.6 8.0 65 108-172 8-79 (94)
30 cd05025 S-100A1 S-100A1: S-100 99.3 3.2E-11 6.9E-16 73.7 8.1 68 107-174 8-82 (92)
31 cd05026 S-100Z S-100Z: S-100Z 99.3 3.1E-11 6.8E-16 73.8 8.0 66 108-173 10-82 (93)
32 PF13833 EF-hand_8: EF-hand do 99.3 1.8E-11 4E-16 67.2 6.3 52 121-172 1-53 (54)
33 KOG0034 Ca2+/calmodulin-depend 99.3 6.9E-11 1.5E-15 80.7 10.3 100 38-137 69-176 (187)
34 cd05027 S-100B S-100B: S-100B 99.2 9E-11 2E-15 70.8 8.3 67 33-99 6-79 (88)
35 cd00213 S-100 S-100: S-100 dom 99.2 4.5E-11 9.8E-16 72.5 7.1 69 107-175 7-82 (88)
36 cd00052 EH Eps15 homology doma 99.2 9.8E-11 2.1E-15 67.2 7.4 60 111-172 2-61 (67)
37 smart00027 EH Eps15 homology d 99.2 1.5E-10 3.2E-15 71.4 8.6 70 28-99 3-72 (96)
38 PLN02964 phosphatidylserine de 99.2 3.5E-10 7.5E-15 90.2 12.0 120 49-172 118-243 (644)
39 smart00027 EH Eps15 homology d 99.2 1.5E-10 3.3E-15 71.3 7.7 65 107-173 9-73 (96)
40 cd05023 S-100A11 S-100A11: S-1 99.2 2.8E-10 6.1E-15 68.8 8.1 67 108-174 9-82 (89)
41 cd00051 EFh EF-hand, calcium b 99.2 2.9E-10 6.3E-15 63.8 7.6 61 110-170 2-62 (63)
42 KOG0028 Ca2+-binding protein ( 99.2 1.3E-09 2.7E-14 71.1 11.1 102 71-173 33-135 (172)
43 cd05025 S-100A1 S-100A1: S-100 99.1 7.6E-10 1.6E-14 67.6 8.3 67 33-99 7-80 (92)
44 cd05029 S-100A6 S-100A6: S-100 99.1 8.2E-10 1.8E-14 66.7 8.0 69 32-100 7-80 (88)
45 KOG2562 Protein phosphatase 2 99.1 1.5E-09 3.2E-14 81.9 10.7 135 31-169 274-421 (493)
46 cd05031 S-100A10_like S-100A10 99.1 8.7E-10 1.9E-14 67.6 8.0 67 33-99 6-79 (94)
47 KOG0040 Ca2+-binding actin-bun 99.1 3.5E-09 7.6E-14 89.1 13.0 140 25-172 2243-2398(2399)
48 cd05026 S-100Z S-100Z: S-100Z 99.1 1.1E-09 2.4E-14 66.9 7.8 70 31-100 6-82 (93)
49 cd00213 S-100 S-100: S-100 dom 99.1 1E-09 2.3E-14 66.5 7.5 69 31-99 4-79 (88)
50 PF13833 EF-hand_8: EF-hand do 99.1 8.6E-10 1.9E-14 60.5 6.5 51 48-98 1-52 (54)
51 PF14658 EF-hand_9: EF-hand do 99.1 1E-09 2.3E-14 61.4 6.5 61 112-172 2-64 (66)
52 cd00052 EH Eps15 homology doma 99.0 1.7E-09 3.7E-14 61.9 7.5 60 38-99 2-61 (67)
53 cd05030 calgranulins Calgranul 99.0 1.2E-09 2.5E-14 66.1 7.0 68 108-175 8-82 (88)
54 cd00252 SPARC_EC SPARC_EC; ext 99.0 1.3E-09 2.9E-14 68.9 7.5 63 106-172 46-108 (116)
55 KOG2643 Ca2+ binding protein, 99.0 3.1E-09 6.7E-14 79.6 10.5 133 36-174 319-455 (489)
56 cd00051 EFh EF-hand, calcium b 99.0 2.9E-09 6.3E-14 59.6 7.4 61 37-97 2-62 (63)
57 PF14658 EF-hand_9: EF-hand do 99.0 4.4E-09 9.6E-14 58.9 6.6 60 40-99 3-64 (66)
58 KOG0036 Predicted mitochondria 98.9 3.3E-08 7.1E-13 73.8 12.6 129 31-170 47-181 (463)
59 cd05023 S-100A11 S-100A11: S-1 98.9 1.3E-08 2.9E-13 61.5 8.0 69 32-100 6-81 (89)
60 KOG2643 Ca2+ binding protein, 98.8 1.1E-07 2.5E-12 71.4 12.0 129 37-171 235-383 (489)
61 KOG4251 Calcium binding protei 98.8 3.6E-08 7.9E-13 68.9 8.1 139 33-171 99-308 (362)
62 KOG0041 Predicted Ca2+-binding 98.8 7E-08 1.5E-12 65.4 9.2 113 24-136 88-203 (244)
63 cd00252 SPARC_EC SPARC_EC; ext 98.8 5.2E-08 1.1E-12 61.7 7.7 59 71-134 48-106 (116)
64 PF12763 EF-hand_4: Cytoskelet 98.8 8.8E-08 1.9E-12 59.4 8.0 71 26-99 1-71 (104)
65 cd05030 calgranulins Calgranul 98.8 5.8E-08 1.3E-12 58.7 7.0 68 32-99 5-79 (88)
66 cd05024 S-100A10 S-100A10: A s 98.7 2.3E-07 5E-12 55.7 8.4 65 108-173 8-77 (91)
67 PF00036 EF-hand_1: EF hand; 98.7 3.4E-08 7.3E-13 46.6 3.3 27 110-136 2-28 (29)
68 KOG0038 Ca2+-binding kinase in 98.6 2.7E-07 5.8E-12 59.5 7.9 99 39-137 75-178 (189)
69 KOG0031 Myosin regulatory ligh 98.6 2.8E-07 6.1E-12 59.9 7.9 98 71-173 32-130 (171)
70 KOG0041 Predicted Ca2+-binding 98.6 2.5E-07 5.3E-12 62.8 7.8 66 108-173 99-164 (244)
71 KOG4666 Predicted phosphate ac 98.5 1.3E-07 2.7E-12 68.7 5.0 104 71-176 259-363 (412)
72 KOG0169 Phosphoinositide-speci 98.5 3.9E-06 8.4E-11 67.4 12.4 141 28-173 129-275 (746)
73 PF13405 EF-hand_6: EF-hand do 98.5 1.9E-07 4.2E-12 44.9 3.3 30 109-138 1-31 (31)
74 PF00036 EF-hand_1: EF hand; 98.5 2.6E-07 5.6E-12 43.5 3.6 28 145-172 1-28 (29)
75 cd05024 S-100A10 S-100A10: A s 98.5 2.6E-06 5.7E-11 51.2 8.3 67 33-100 6-77 (91)
76 KOG0030 Myosin essential light 98.4 1.5E-06 3.3E-11 55.6 6.5 68 108-175 11-80 (152)
77 PRK12309 transaldolase/EF-hand 98.4 1.7E-06 3.8E-11 65.9 7.7 59 106-177 332-390 (391)
78 PF12763 EF-hand_4: Cytoskelet 98.3 4.6E-06 1E-10 51.8 7.4 62 107-171 9-70 (104)
79 PF13405 EF-hand_6: EF-hand do 98.3 1.4E-06 3.1E-11 41.8 3.6 30 36-65 1-31 (31)
80 PF14788 EF-hand_10: EF hand; 98.3 6.1E-06 1.3E-10 43.7 5.7 48 125-172 2-49 (51)
81 PF14788 EF-hand_10: EF hand; 98.2 7.6E-06 1.6E-10 43.4 5.7 48 52-99 2-49 (51)
82 PF13202 EF-hand_5: EF hand; P 98.2 1.7E-06 3.6E-11 39.3 2.7 23 111-133 2-24 (25)
83 KOG0751 Mitochondrial aspartat 98.2 7.4E-06 1.6E-10 62.9 7.5 125 41-167 80-239 (694)
84 PRK12309 transaldolase/EF-hand 98.2 1.3E-05 2.7E-10 61.3 8.3 60 64-137 327-386 (391)
85 KOG0040 Ca2+-binding actin-bun 98.1 1.3E-05 2.8E-10 68.7 7.6 67 108-174 2253-2326(2399)
86 KOG2562 Protein phosphatase 2 98.1 5.5E-05 1.2E-09 57.8 10.1 132 36-171 226-378 (493)
87 KOG0751 Mitochondrial aspartat 98.1 3.9E-05 8.4E-10 59.1 9.2 111 24-137 25-137 (694)
88 KOG1707 Predicted Ras related/ 98.0 4E-05 8.6E-10 60.3 8.9 141 27-171 187-376 (625)
89 KOG0377 Protein serine/threoni 98.0 3.2E-05 7E-10 58.8 7.6 108 25-137 506-616 (631)
90 KOG1029 Endocytic adaptor prot 98.0 0.00013 2.8E-09 59.1 11.1 140 27-171 8-256 (1118)
91 KOG0046 Ca2+-binding actin-bun 98.0 3.2E-05 6.9E-10 59.9 7.4 77 23-100 7-86 (627)
92 PF10591 SPARC_Ca_bdg: Secrete 98.0 2.7E-06 5.8E-11 53.8 1.4 63 105-169 51-113 (113)
93 PF13202 EF-hand_5: EF hand; P 97.9 1.8E-05 3.8E-10 35.9 3.1 25 146-170 1-25 (25)
94 PF09279 EF-hand_like: Phospho 97.9 5.8E-05 1.3E-09 45.0 5.8 66 109-175 1-72 (83)
95 KOG4065 Uncharacterized conser 97.6 0.00027 5.9E-09 43.9 5.9 64 106-169 64-142 (144)
96 KOG0046 Ca2+-binding actin-bun 97.4 0.00058 1.2E-08 53.2 6.8 63 109-172 20-85 (627)
97 PF10591 SPARC_Ca_bdg: Secrete 97.4 9.3E-05 2E-09 46.8 2.0 63 67-132 50-112 (113)
98 KOG4666 Predicted phosphate ac 97.4 0.00076 1.6E-08 49.6 6.2 102 35-138 259-361 (412)
99 smart00054 EFh EF-hand, calciu 97.3 0.00034 7.4E-09 31.9 3.0 25 111-135 3-27 (29)
100 KOG4251 Calcium binding protei 97.3 0.0002 4.4E-09 50.5 2.6 66 72-137 102-169 (362)
101 PF05042 Caleosin: Caleosin re 97.3 0.012 2.5E-07 39.7 10.6 135 34-169 6-163 (174)
102 KOG0998 Synaptic vesicle prote 97.1 0.0011 2.3E-08 55.8 5.9 145 23-172 117-345 (847)
103 KOG0035 Ca2+-binding actin-bun 97.0 0.009 2E-07 49.9 9.9 107 25-132 737-848 (890)
104 smart00054 EFh EF-hand, calciu 97.0 0.0011 2.4E-08 30.1 3.0 26 37-62 2-27 (29)
105 PF09279 EF-hand_like: Phospho 97.0 0.0035 7.6E-08 37.2 5.6 64 72-136 1-69 (83)
106 PLN02952 phosphoinositide phos 96.9 0.016 3.5E-07 46.9 10.0 87 85-172 14-110 (599)
107 KOG1029 Endocytic adaptor prot 96.7 0.0062 1.3E-07 49.9 6.7 68 30-99 190-257 (1118)
108 KOG3555 Ca2+-binding proteogly 96.7 0.0057 1.2E-07 45.5 6.0 109 35-149 211-322 (434)
109 KOG1265 Phospholipase C [Lipid 96.5 0.12 2.5E-06 43.5 12.7 121 45-172 158-299 (1189)
110 KOG1955 Ral-GTPase effector RA 96.4 0.012 2.6E-07 46.0 6.2 74 25-100 221-294 (737)
111 KOG0169 Phosphoinositide-speci 96.4 0.04 8.7E-07 45.2 9.3 98 69-171 134-231 (746)
112 PF05042 Caleosin: Caleosin re 96.1 0.049 1.1E-06 36.8 7.2 36 140-175 92-127 (174)
113 PF05517 p25-alpha: p25-alpha 96.1 0.042 9.1E-07 36.8 6.8 61 112-172 3-69 (154)
114 PF09069 EF-hand_3: EF-hand; 96.0 0.13 2.8E-06 31.0 7.8 65 108-175 3-78 (90)
115 PF05517 p25-alpha: p25-alpha 95.9 0.07 1.5E-06 35.7 7.4 65 36-100 3-70 (154)
116 KOG0042 Glycerol-3-phosphate d 95.5 0.045 9.8E-07 43.6 5.8 75 28-102 586-660 (680)
117 KOG4065 Uncharacterized conser 95.5 0.099 2.1E-06 32.8 6.1 69 25-95 59-141 (144)
118 KOG2243 Ca2+ release channel ( 95.3 0.033 7E-07 48.9 4.9 62 112-174 4061-4122(5019)
119 KOG4578 Uncharacterized conser 95.3 0.014 3.1E-07 43.2 2.5 63 110-172 335-398 (421)
120 KOG4347 GTPase-activating prot 95.1 0.036 7.8E-07 44.7 4.3 107 22-130 491-612 (671)
121 KOG3866 DNA-binding protein of 95.1 0.082 1.8E-06 39.0 5.7 60 111-170 247-322 (442)
122 PLN02952 phosphoinositide phos 95.0 0.41 8.8E-06 39.1 10.0 87 48-135 13-109 (599)
123 KOG1955 Ral-GTPase effector RA 94.9 0.086 1.9E-06 41.4 5.8 60 110-171 233-292 (737)
124 KOG0042 Glycerol-3-phosphate d 94.8 0.072 1.6E-06 42.6 5.1 64 109-172 594-657 (680)
125 KOG4578 Uncharacterized conser 94.4 0.029 6.2E-07 41.6 2.1 66 72-137 334-399 (421)
126 KOG3555 Ca2+-binding proteogly 93.7 0.11 2.5E-06 38.8 4.1 61 108-172 250-310 (434)
127 PF08726 EFhand_Ca_insen: Ca2+ 93.5 0.043 9.4E-07 31.3 1.3 56 107-170 5-67 (69)
128 KOG0035 Ca2+-binding actin-bun 93.2 0.32 6.9E-06 41.2 6.3 67 107-173 746-817 (890)
129 KOG4347 GTPase-activating prot 93.2 0.2 4.4E-06 40.6 4.9 57 107-164 554-610 (671)
130 KOG1264 Phospholipase C [Lipid 92.6 0.71 1.5E-05 38.9 7.3 139 36-175 145-296 (1267)
131 PF08976 DUF1880: Domain of un 92.3 0.15 3.2E-06 32.1 2.5 31 141-171 4-34 (118)
132 PLN02228 Phosphoinositide phos 92.1 1.1 2.4E-05 36.5 7.7 28 69-98 22-49 (567)
133 cd07313 terB_like_2 tellurium 91.9 1.5 3.2E-05 26.9 6.9 84 48-133 12-97 (104)
134 PF14513 DAG_kinase_N: Diacylg 91.7 0.46 1E-05 31.1 4.4 72 48-121 4-82 (138)
135 PLN02222 phosphoinositide phos 91.6 0.96 2.1E-05 36.9 7.0 63 108-172 25-90 (581)
136 KOG0998 Synaptic vesicle prote 91.4 0.2 4.4E-06 42.7 3.2 72 27-100 275-346 (847)
137 KOG2243 Ca2+ release channel ( 91.1 0.56 1.2E-05 41.9 5.3 58 40-98 4062-4119(5019)
138 PF14513 DAG_kinase_N: Diacylg 89.3 2 4.4E-05 28.1 5.8 67 86-155 6-80 (138)
139 PLN02230 phosphoinositide phos 88.6 2.5 5.5E-05 34.7 7.1 66 106-172 27-102 (598)
140 KOG3866 DNA-binding protein of 88.5 0.9 2E-05 33.8 4.2 20 115-134 303-322 (442)
141 KOG4286 Dystrophin-like protei 88.5 5.1 0.00011 33.7 8.6 137 34-174 419-582 (966)
142 PF09069 EF-hand_3: EF-hand; 87.3 4.7 0.0001 24.4 7.3 61 35-98 3-74 (90)
143 KOG0039 Ferric reductase, NADH 87.2 1.8 3.9E-05 36.1 5.6 80 85-172 2-89 (646)
144 KOG1707 Predicted Ras related/ 87.1 1.7 3.6E-05 35.3 5.2 87 28-120 308-398 (625)
145 PF08414 NADPH_Ox: Respiratory 86.4 2 4.3E-05 26.3 4.1 61 35-100 30-93 (100)
146 PF11116 DUF2624: Protein of u 86.2 5.2 0.00011 23.8 6.3 33 124-156 14-46 (85)
147 PF12174 RST: RCD1-SRO-TAF4 (R 86.1 1.1 2.3E-05 25.7 2.7 49 85-137 6-54 (70)
148 PF09068 EF-hand_2: EF hand; 84.5 8.6 0.00019 24.8 7.2 28 109-136 98-125 (127)
149 PLN02228 Phosphoinositide phos 83.6 8.6 0.00019 31.6 7.7 62 34-97 23-90 (567)
150 PF12174 RST: RCD1-SRO-TAF4 (R 82.5 3.9 8.5E-05 23.4 4.1 48 51-101 8-55 (70)
151 PLN02223 phosphoinositide phos 81.4 9.1 0.0002 31.1 7.0 66 106-172 14-92 (537)
152 KOG1265 Phospholipase C [Lipid 80.5 25 0.00055 30.5 9.4 82 52-136 205-299 (1189)
153 TIGR01639 P_fal_TIGR01639 Plas 79.6 5.3 0.00012 22.1 3.9 32 123-154 8-39 (61)
154 KOG4403 Cell surface glycoprot 79.2 6.9 0.00015 30.7 5.5 27 70-96 67-93 (575)
155 KOG2871 Uncharacterized conser 78.6 2.1 4.5E-05 32.8 2.6 64 107-170 308-372 (449)
156 PF08414 NADPH_Ox: Respiratory 78.1 13 0.00029 22.8 6.3 60 108-172 30-92 (100)
157 PF03672 UPF0154: Uncharacteri 77.9 8.3 0.00018 21.6 4.2 33 121-153 28-60 (64)
158 KOG3449 60S acidic ribosomal p 77.6 15 0.00032 23.0 6.5 55 37-96 3-57 (112)
159 cd07313 terB_like_2 tellurium 77.1 6.1 0.00013 24.1 4.1 53 85-137 13-66 (104)
160 COG3763 Uncharacterized protei 77.0 9.1 0.0002 21.8 4.2 43 111-154 26-68 (71)
161 PF11116 DUF2624: Protein of u 77.0 13 0.00028 22.2 7.2 49 50-98 13-61 (85)
162 PF08726 EFhand_Ca_insen: Ca2+ 76.9 3.8 8.1E-05 23.4 2.8 27 34-61 5-31 (69)
163 TIGR01848 PHA_reg_PhaR polyhyd 76.8 9.6 0.00021 23.7 4.7 71 79-160 11-85 (107)
164 PF00404 Dockerin_1: Dockerin 76.0 5.2 0.00011 17.0 2.6 14 118-131 1-14 (21)
165 KOG3449 60S acidic ribosomal p 75.8 17 0.00036 22.8 5.7 43 112-154 5-47 (112)
166 PLN02222 phosphoinositide phos 75.3 18 0.0004 29.8 7.2 63 35-99 25-90 (581)
167 PRK00523 hypothetical protein; 74.2 11 0.00024 21.6 4.1 42 111-153 27-68 (72)
168 PF08976 DUF1880: Domain of un 71.9 4.8 0.0001 25.5 2.5 31 68-98 4-34 (118)
169 PF05099 TerB: Tellurite resis 71.7 6.2 0.00014 25.5 3.3 80 48-129 36-117 (140)
170 PF04157 EAP30: EAP30/Vps36 fa 71.5 16 0.00035 26.0 5.6 114 34-153 96-214 (223)
171 KOG2301 Voltage-gated Ca2+ cha 71.2 12 0.00026 34.7 5.7 71 28-99 1410-1484(1592)
172 PRK01844 hypothetical protein; 69.5 19 0.00041 20.7 4.9 42 111-153 26-67 (72)
173 TIGR01639 P_fal_TIGR01639 Plas 69.1 15 0.00032 20.3 3.9 31 50-80 8-38 (61)
174 PF07879 PHB_acc_N: PHB/PHA ac 68.9 10 0.00022 21.3 3.1 20 116-135 11-30 (64)
175 PLN02230 phosphoinositide phos 68.6 33 0.00071 28.5 7.2 28 36-64 30-57 (598)
176 PRK09430 djlA Dna-J like membr 68.4 45 0.00098 24.6 9.6 100 48-153 68-175 (267)
177 KOG0113 U1 small nuclear ribon 67.9 29 0.00062 26.0 6.1 88 34-121 40-129 (335)
178 KOG4070 Putative signal transd 67.1 35 0.00076 22.8 6.0 48 51-98 33-84 (180)
179 cd07176 terB tellurite resista 66.3 14 0.0003 22.6 4.0 80 48-130 15-99 (111)
180 KOG4301 Beta-dystrobrevin [Cyt 66.2 13 0.00029 28.3 4.2 62 112-174 114-175 (434)
181 PF03979 Sigma70_r1_1: Sigma-7 65.5 8.2 0.00018 22.7 2.6 32 121-154 18-49 (82)
182 PF07308 DUF1456: Protein of u 65.0 24 0.00051 20.1 5.3 26 127-152 16-41 (68)
183 KOG2871 Uncharacterized conser 64.6 7.1 0.00015 30.0 2.6 66 34-99 308-374 (449)
184 PF07308 DUF1456: Protein of u 64.5 24 0.00052 20.0 5.2 45 54-98 16-60 (68)
185 KOG2557 Uncharacterized conser 63.9 24 0.00051 27.3 5.2 52 85-137 72-123 (427)
186 PF12419 DUF3670: SNF2 Helicas 63.5 18 0.00039 23.8 4.2 49 121-169 80-138 (141)
187 COG4103 Uncharacterized protei 63.1 41 0.0009 22.2 6.7 93 39-135 34-128 (148)
188 TIGR03573 WbuX N-acetyl sugar 62.0 27 0.00058 26.8 5.4 44 121-170 299-342 (343)
189 COG4103 Uncharacterized protei 61.9 37 0.00081 22.4 5.2 28 108-135 66-93 (148)
190 PTZ00373 60S Acidic ribosomal 61.7 38 0.00083 21.4 5.8 42 112-153 7-48 (112)
191 PF08461 HTH_12: Ribonuclease 61.6 18 0.00039 20.3 3.4 37 121-157 10-46 (66)
192 KOG4004 Matricellular protein 61.2 2.9 6.2E-05 29.2 0.1 55 114-170 193-248 (259)
193 PF01023 S_100: S-100/ICaBP ty 60.5 22 0.00047 18.2 3.9 29 109-137 7-37 (44)
194 PF04282 DUF438: Family of unk 58.7 33 0.00072 19.7 5.9 19 59-77 4-22 (71)
195 KOG3077 Uncharacterized conser 58.3 72 0.0016 23.5 11.9 70 32-101 61-131 (260)
196 KOG0506 Glutaminase (contains 57.2 34 0.00073 27.5 5.2 60 74-134 89-156 (622)
197 PF02761 Cbl_N2: CBL proto-onc 56.5 41 0.00089 20.1 5.7 48 87-135 22-69 (85)
198 PF11829 DUF3349: Protein of u 55.7 46 0.00099 20.4 5.0 29 52-80 20-48 (96)
199 KOG4004 Matricellular protein 55.6 5.6 0.00012 27.8 0.8 80 52-134 165-248 (259)
200 cd07316 terB_like_DjlA N-termi 54.9 46 0.00099 20.2 7.8 82 48-131 12-96 (106)
201 cd05833 Ribosomal_P2 Ribosomal 53.6 54 0.0012 20.6 5.8 56 112-172 5-60 (109)
202 COG5069 SAC6 Ca2+-binding acti 53.3 27 0.00059 28.1 4.1 84 36-124 486-570 (612)
203 KOG4070 Putative signal transd 53.0 45 0.00096 22.3 4.5 48 109-156 58-110 (180)
204 KOG4286 Dystrophin-like protei 52.2 1.1E+02 0.0024 26.4 7.5 104 68-172 417-533 (966)
205 KOG1785 Tyrosine kinase negati 51.6 1.2E+02 0.0026 24.0 7.8 81 50-137 189-275 (563)
206 PLN00138 large subunit ribosom 51.3 61 0.0013 20.5 5.2 42 113-154 6-47 (113)
207 PF01885 PTS_2-RNA: RNA 2'-pho 50.7 35 0.00076 23.6 4.1 36 45-80 26-61 (186)
208 PF06648 DUF1160: Protein of u 50.0 68 0.0015 20.7 5.5 14 124-137 67-80 (122)
209 COG4535 CorC Putative Mg2+ and 49.4 64 0.0014 23.6 5.2 61 85-149 176-239 (293)
210 PTZ00373 60S Acidic ribosomal 48.5 68 0.0015 20.3 5.3 53 38-95 6-58 (112)
211 PF07499 RuvA_C: RuvA, C-termi 48.3 39 0.00084 17.4 4.5 38 128-169 4-41 (47)
212 cd04790 HTH_Cfa-like_unk Helix 47.5 89 0.0019 21.3 6.2 53 86-148 114-166 (172)
213 KOG1954 Endocytosis/signaling 46.9 50 0.0011 25.9 4.6 57 37-96 446-502 (532)
214 PF12486 DUF3702: ImpA domain 46.3 35 0.00076 22.7 3.4 34 31-64 65-98 (148)
215 PF09336 Vps4_C: Vps4 C termin 45.8 31 0.00067 19.1 2.7 26 124-149 29-54 (62)
216 PF01885 PTS_2-RNA: RNA 2'-pho 45.7 42 0.00092 23.3 3.9 34 119-152 27-60 (186)
217 cd07177 terB_like tellurium re 45.5 64 0.0014 19.1 6.2 79 49-132 13-96 (104)
218 PF13623 SurA_N_2: SurA N-term 45.2 89 0.0019 20.7 7.1 15 155-169 130-144 (145)
219 cd03035 ArsC_Yffb Arsenate Red 44.3 24 0.00053 21.8 2.3 49 124-175 35-86 (105)
220 PRK00819 RNA 2'-phosphotransfe 43.5 69 0.0015 22.1 4.6 36 45-80 27-62 (179)
221 PF04876 Tenui_NCP: Tenuivirus 43.2 99 0.0022 20.7 7.6 71 73-152 85-160 (175)
222 PRK00819 RNA 2'-phosphotransfe 42.8 64 0.0014 22.3 4.3 17 82-98 28-44 (179)
223 PF11363 DUF3164: Protein of u 42.4 1.2E+02 0.0026 21.3 6.5 21 114-134 125-145 (195)
224 PRK09430 djlA Dna-J like membr 41.4 96 0.0021 22.9 5.4 10 85-94 69-78 (267)
225 TIGR02675 tape_meas_nterm tape 41.1 43 0.00093 19.3 2.9 34 28-63 9-42 (75)
226 KOG1785 Tyrosine kinase negati 40.6 1.8E+02 0.004 23.0 7.4 102 68-174 172-276 (563)
227 PLN02223 phosphoinositide phos 40.6 1.8E+02 0.0039 24.0 7.0 64 35-99 16-92 (537)
228 PHA02105 hypothetical protein 40.4 64 0.0014 17.6 3.2 48 51-98 4-56 (68)
229 cd05833 Ribosomal_P2 Ribosomal 40.4 94 0.002 19.5 5.3 55 39-98 5-59 (109)
230 PF11829 DUF3349: Protein of u 39.8 90 0.0019 19.2 5.7 68 85-153 17-85 (96)
231 PF03732 Retrotrans_gag: Retro 39.8 77 0.0017 18.4 4.8 14 87-100 26-39 (96)
232 PF09373 PMBR: Pseudomurein-bi 39.5 40 0.00088 15.9 2.2 15 122-136 2-16 (33)
233 PF09184 PPP4R2: PPP4R2; Inte 38.0 1.7E+02 0.0038 21.9 10.7 112 55-174 3-128 (288)
234 PF11020 DUF2610: Domain of un 37.6 84 0.0018 18.5 3.6 43 131-173 35-78 (82)
235 PRK14981 DNA-directed RNA poly 37.3 83 0.0018 19.8 3.9 27 126-152 80-106 (112)
236 PF12987 DUF3871: Domain of un 37.1 1.3E+02 0.0028 22.7 5.3 57 120-176 213-289 (323)
237 KOG0148 Apoptosis-promoting RN 36.7 5.9 0.00013 29.1 -1.4 74 66-140 16-89 (321)
238 KOG4301 Beta-dystrobrevin [Cyt 36.7 89 0.0019 24.1 4.5 54 43-97 118-171 (434)
239 PF07128 DUF1380: Protein of u 36.5 70 0.0015 21.1 3.5 31 125-155 27-57 (139)
240 PLN00138 large subunit ribosom 35.8 1.2E+02 0.0025 19.3 5.3 51 40-95 6-56 (113)
241 PF02459 Adeno_terminal: Adeno 35.7 67 0.0015 26.2 4.0 48 109-156 456-503 (548)
242 KOG0506 Glutaminase (contains 35.6 1.4E+02 0.003 24.3 5.6 59 40-98 91-157 (622)
243 KOG2301 Voltage-gated Ca2+ cha 35.0 38 0.00083 31.7 2.8 67 105-172 1414-1484(1592)
244 PF14069 SpoVIF: Stage VI spor 35.0 98 0.0021 18.2 5.7 46 125-171 28-77 (79)
245 KOG1954 Endocytosis/signaling 34.8 70 0.0015 25.2 3.8 55 110-167 446-500 (532)
246 cd08315 Death_TRAILR_DR4_DR5 D 34.6 1.1E+02 0.0024 18.6 7.3 88 35-151 4-91 (96)
247 PF12825 DUF3818: Domain of un 34.2 2.2E+02 0.0048 22.0 8.4 52 26-77 169-231 (341)
248 COG2036 HHT1 Histones H3 and H 34.1 1.1E+02 0.0024 18.5 5.8 80 52-139 4-86 (91)
249 cd04411 Ribosomal_P1_P2_L12p R 33.3 1.2E+02 0.0027 18.9 6.0 42 125-171 17-58 (105)
250 PF02761 Cbl_N2: CBL proto-onc 32.8 1.1E+02 0.0024 18.3 5.8 48 122-169 20-67 (85)
251 PF12631 GTPase_Cys_C: Catalyt 32.5 79 0.0017 18.0 3.1 45 109-153 24-72 (73)
252 PF09851 SHOCT: Short C-termin 32.2 61 0.0013 15.0 2.2 14 122-135 14-27 (31)
253 KOG4403 Cell surface glycoprot 32.2 1.3E+02 0.0028 24.0 4.9 61 34-98 67-128 (575)
254 PF02037 SAP: SAP domain; Int 31.9 60 0.0013 15.5 2.1 18 124-141 3-20 (35)
255 PRK06402 rpl12p 50S ribosomal 31.8 1.3E+02 0.0029 18.8 5.9 30 124-153 16-45 (106)
256 KOG0039 Ferric reductase, NADH 31.8 1.4E+02 0.003 25.3 5.4 26 110-135 63-88 (646)
257 PF02337 Gag_p10: Retroviral G 31.7 1.1E+02 0.0023 18.6 3.6 11 156-166 69-79 (90)
258 PF08671 SinI: Anti-repressor 31.6 54 0.0012 15.3 1.8 11 125-135 17-27 (30)
259 PF07862 Nif11: Nitrogen fixat 31.0 83 0.0018 16.2 2.8 21 53-73 28-48 (49)
260 PF07531 TAFH: NHR1 homology t 31.0 45 0.00099 20.4 1.9 15 159-173 39-53 (96)
261 smart00513 SAP Putative DNA-bi 30.7 69 0.0015 15.1 2.6 18 124-141 3-20 (35)
262 PHA02771 hypothetical protein; 30.7 1.3E+02 0.0028 18.2 3.9 8 129-136 5-12 (90)
263 PF07492 Trehalase_Ca-bi: Neut 30.3 10 0.00023 17.6 -0.7 14 114-127 5-18 (30)
264 PF08044 DUF1707: Domain of un 30.3 95 0.0021 16.6 3.1 31 48-78 20-50 (53)
265 PF04695 Pex14_N: Peroxisomal 30.1 1.6E+02 0.0035 19.2 5.8 48 108-157 4-51 (136)
266 PF08355 EF_assoc_1: EF hand a 29.9 52 0.0011 19.1 2.0 19 153-171 11-29 (76)
267 PRK04387 hypothetical protein; 29.2 1.4E+02 0.003 18.1 4.0 64 27-91 9-73 (90)
268 PF04433 SWIRM: SWIRM domain; 29.0 46 0.001 19.6 1.7 17 119-135 48-64 (86)
269 TIGR00135 gatC glutamyl-tRNA(G 28.9 1.3E+02 0.0029 17.9 4.0 26 125-150 1-26 (93)
270 PRK13344 spxA transcriptional 28.5 1.7E+02 0.0037 18.9 4.7 50 124-175 36-88 (132)
271 PF06384 ICAT: Beta-catenin-in 28.4 90 0.0019 18.3 2.7 21 129-149 21-41 (78)
272 PF12793 SgrR_N: Sugar transpo 27.9 1.6E+02 0.0036 18.6 4.4 38 110-153 6-43 (115)
273 KOG4629 Predicted mechanosensi 27.5 1.5E+02 0.0032 25.5 4.8 57 109-172 405-461 (714)
274 PF04558 tRNA_synt_1c_R1: Glut 27.1 2.1E+02 0.0045 19.5 5.5 47 106-153 83-129 (164)
275 PF14771 DUF4476: Domain of un 27.1 1.5E+02 0.0032 17.8 9.4 88 52-148 5-93 (95)
276 PF06226 DUF1007: Protein of u 26.4 79 0.0017 22.4 2.8 27 112-138 54-80 (212)
277 PF05256 UPF0223: Uncharacteri 26.4 1.2E+02 0.0026 18.3 3.1 63 28-91 10-73 (88)
278 TIGR03798 ocin_TIGR03798 bacte 26.1 1.3E+02 0.0027 16.6 3.3 25 125-149 25-49 (64)
279 PF12238 MSA-2c: Merozoite sur 26.0 2.4E+02 0.0052 20.1 5.0 87 51-138 27-115 (205)
280 TIGR03573 WbuX N-acetyl sugar 25.9 2.3E+02 0.0049 21.8 5.4 68 54-134 273-342 (343)
281 cd00076 H4 Histone H4, one of 25.7 1.6E+02 0.0034 17.6 7.6 65 68-140 14-81 (85)
282 PF07553 Lipoprotein_Ltp: Host 25.7 1.1E+02 0.0024 16.0 3.4 31 122-152 16-47 (48)
283 cd01671 CARD Caspase activatio 25.0 1.4E+02 0.0031 16.9 4.0 45 123-172 26-70 (80)
284 cd07894 Adenylation_RNA_ligase 24.9 2E+02 0.0044 22.2 4.9 27 41-67 131-157 (342)
285 KOG2278 RNA:NAD 2'-phosphotran 24.7 97 0.0021 21.4 2.8 38 43-80 26-63 (207)
286 cd06404 PB1_aPKC PB1 domain is 24.3 1.7E+02 0.0036 17.5 3.6 20 107-126 58-77 (83)
287 PRK10026 arsenate reductase; P 23.9 2.2E+02 0.0049 18.8 4.8 51 123-175 37-90 (141)
288 PF10437 Lip_prot_lig_C: Bacte 23.6 1.6E+02 0.0036 17.1 5.1 42 127-170 44-86 (86)
289 cd00171 Sec7 Sec7 domain; Doma 23.6 2.5E+02 0.0055 19.3 10.1 39 117-155 142-182 (185)
290 PTZ00015 histone H4; Provision 23.5 1.9E+02 0.0042 17.9 7.7 69 67-140 30-98 (102)
291 PF13551 HTH_29: Winged helix- 23.5 1.8E+02 0.0039 17.5 5.8 51 29-79 58-110 (112)
292 PRK00034 gatC aspartyl/glutamy 23.2 1.8E+02 0.0039 17.4 4.1 27 125-151 3-29 (95)
293 KOG2525 Folylpolyglutamate syn 23.0 3.3E+02 0.0071 22.3 5.7 39 47-86 46-84 (496)
294 PF11848 DUF3368: Domain of un 22.7 1.3E+02 0.0028 15.5 3.9 33 121-153 14-47 (48)
295 COG2818 Tag 3-methyladenine DN 22.5 80 0.0017 22.0 2.1 44 35-78 55-98 (188)
296 TIGR01565 homeo_ZF_HD homeobox 22.5 1.5E+02 0.0032 16.2 3.9 36 26-66 5-44 (58)
297 PF08730 Rad33: Rad33; InterP 22.3 2.7E+02 0.0058 19.1 10.3 39 28-67 7-45 (170)
298 PF10815 ComZ: ComZ; InterPro 22.3 1.4E+02 0.0031 16.0 3.3 25 129-153 16-40 (56)
299 PF09494 Slx4: Slx4 endonuclea 22.3 1.5E+02 0.0033 16.3 3.6 16 123-138 43-58 (64)
300 PF03960 ArsC: ArsC family; I 22.0 50 0.0011 20.4 1.0 53 124-176 32-86 (110)
301 PF14164 YqzH: YqzH-like prote 21.9 1.6E+02 0.0036 16.5 3.6 30 108-137 8-38 (64)
302 PF15144 DUF4576: Domain of un 21.9 39 0.00085 19.7 0.5 31 50-80 39-69 (88)
303 PF03874 RNA_pol_Rpb4: RNA pol 21.8 1.1E+02 0.0023 19.1 2.5 11 125-135 71-81 (117)
304 cd03033 ArsC_15kD Arsenate Red 21.6 1.3E+02 0.0029 18.8 2.9 15 124-138 36-50 (113)
305 cd02977 ArsC_family Arsenate R 21.6 2E+02 0.0043 17.4 5.0 52 123-175 34-88 (105)
306 KOG4629 Predicted mechanosensi 21.5 2.7E+02 0.0059 24.0 5.3 58 72-137 405-462 (714)
307 PF09107 SelB-wing_3: Elongati 21.5 1.4E+02 0.0031 15.7 3.4 30 121-155 7-36 (50)
308 cd00086 homeodomain Homeodomai 21.5 1.4E+02 0.003 15.5 6.1 45 27-78 5-49 (59)
309 PF02885 Glycos_trans_3N: Glyc 21.2 1.6E+02 0.0035 16.2 4.5 30 105-137 15-44 (66)
310 PF14848 HU-DNA_bdg: DNA-bindi 21.1 2.4E+02 0.0051 18.0 4.2 33 48-80 25-57 (124)
311 COG0721 GatC Asp-tRNAAsn/Glu-t 21.0 2.1E+02 0.0046 17.4 3.8 29 124-152 2-30 (96)
312 smart00549 TAFH TAF homology. 20.9 2.1E+02 0.0046 17.4 3.5 16 159-174 38-53 (92)
313 TIGR01209 RNA ligase, Pab1020 20.8 3.5E+02 0.0076 21.3 5.4 29 40-68 162-190 (374)
314 KOG3077 Uncharacterized conser 20.5 3.6E+02 0.0079 20.0 8.9 83 67-151 60-143 (260)
315 KOG4064 Cysteine dioxygenase C 20.5 1.5E+02 0.0033 19.9 3.0 16 141-156 30-45 (196)
316 PF00427 PBS_linker_poly: Phyc 20.0 2.7E+02 0.0058 18.2 4.1 51 85-137 42-99 (131)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.97 E-value=5.4e-30 Score=168.19 Aligned_cols=151 Identities=33% Similarity=0.542 Sum_probs=143.6
Q ss_pred CCCCCcCCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccc
Q 030421 23 NPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGD 102 (177)
Q Consensus 23 ~~~~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 102 (177)
.....+++.+++++++++|..+|++++|.|+..+|..+++.+|..++..++..++..++. +.+.|+|.+|+.++.....
T Consensus 8 ~~~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~ 86 (160)
T COG5126 8 LLTFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLK 86 (160)
T ss_pred hhhcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhc
Confidence 556678899999999999999999999999999999999999999999999999999999 8899999999999998877
Q ss_pred cccchhHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc
Q 030421 103 NRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRNV 174 (177)
Q Consensus 103 ~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~~ 174 (177)
....+++++.+|+.||.+++|+|+..+++.+++.+|..+++++++.+++.++.+++|.|+|++|...+....
T Consensus 87 ~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~~ 158 (160)
T COG5126 87 RGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDSP 158 (160)
T ss_pred cCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhccC
Confidence 778889999999999999999999999999999999999999999999999999999999999999887654
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.96 E-value=2.6e-27 Score=158.14 Aligned_cols=145 Identities=39% Similarity=0.746 Sum_probs=134.8
Q ss_pred CCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccc--
Q 030421 29 ASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVK-- 106 (177)
Q Consensus 29 ~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~-- 106 (177)
++..++..++.+|..+|.+++|+|+..++..+++.+|..++..++..++..+|.+++|.|++++|+.++.........
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~ 81 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE 81 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc
Confidence 456778899999999999999999999999999999999999999999999999999999999999999876554443
Q ss_pred --hhHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 030421 107 --KNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRN 173 (177)
Q Consensus 107 --~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~ 173 (177)
.+.++.+|+.||.+++|+|+..||+.+|..+|..++.+++..+++.++.|++|.|+|++|+.++...
T Consensus 82 ~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~~ 150 (151)
T KOG0027|consen 82 ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSGK 150 (151)
T ss_pred ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhcC
Confidence 3489999999999999999999999999999999999999999999999999999999999998753
No 3
>PTZ00183 centrin; Provisional
Probab=99.94 E-value=1.1e-24 Score=146.65 Aligned_cols=150 Identities=33% Similarity=0.542 Sum_probs=136.6
Q ss_pred CCCCcCCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcccc
Q 030421 24 PSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDN 103 (177)
Q Consensus 24 ~~~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 103 (177)
...+.+++.+++++..+|..+|.+++|.|+..||..++..+|..++...+..++..++.+++|.|+|++|+.++......
T Consensus 6 ~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~ 85 (158)
T PTZ00183 6 SERPGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGE 85 (158)
T ss_pred cccCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcC
Confidence 34456788999999999999999999999999999999999988899999999999999999999999999988754334
Q ss_pred ccchhHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 030421 104 RVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRN 173 (177)
Q Consensus 104 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~ 173 (177)
....+.++.+|+.+|.+++|.|+.+||..++...|..++..++..++..++.+++|.|++++|..++...
T Consensus 86 ~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 155 (158)
T PTZ00183 86 RDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKKT 155 (158)
T ss_pred CCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhcc
Confidence 4456789999999999999999999999999999999999999999999999999999999999998764
No 4
>PTZ00184 calmodulin; Provisional
Probab=99.92 E-value=1.1e-23 Score=140.37 Aligned_cols=145 Identities=34% Similarity=0.618 Sum_probs=132.4
Q ss_pred cCCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccch
Q 030421 28 RASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKK 107 (177)
Q Consensus 28 ~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 107 (177)
+++..+++.++..|..+|.+++|.|+.++|..++..++..++...+..++..++.+++|.|+|++|+..+..........
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~ 83 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSE 83 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHH
Confidence 45678889999999999999999999999999999999888889999999999999999999999999987554433455
Q ss_pred hHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 108 NDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172 (177)
Q Consensus 108 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 172 (177)
+.+..+|+.+|.+++|.|+.+||+.++...|..++..++..++..+|.+++|.|+|++|..++.+
T Consensus 84 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 84 EEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 68899999999999999999999999999999999999999999999999999999999998764
No 5
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=6.7e-24 Score=136.68 Aligned_cols=153 Identities=30% Similarity=0.501 Sum_probs=141.2
Q ss_pred ccCCCCCCcCCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 20 ERQNPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHD 99 (177)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 99 (177)
.+.....+.++..+...++..|..||.+++|+|+.++|+-.++++|+.+...++..++..++.++.|.|+|++|...+..
T Consensus 18 ~~~~~~~~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~ 97 (172)
T KOG0028|consen 18 AKPASPKSELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTV 97 (172)
T ss_pred hccCCCCccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHH
Confidence 34445666778888899999999999999999999999999999999999999999999999999999999999999876
Q ss_pred ccccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 100 MGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172 (177)
Q Consensus 100 ~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 172 (177)
........+.++.+|+.+|.|++|.|+..+|+.+.+.+|+.++++++++++..++.+++|.|+-++|...+..
T Consensus 98 k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 98 KLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 6555557789999999999999999999999999999999999999999999999999999999999998764
No 6
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.91 E-value=5.3e-23 Score=131.65 Aligned_cols=146 Identities=27% Similarity=0.455 Sum_probs=134.8
Q ss_pred CCCCCCcCCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcc
Q 030421 22 QNPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMG 101 (177)
Q Consensus 22 ~~~~~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 101 (177)
.......+...+|.+++++|..+|.+.+|.|..++++..+.++|...+++++..++... .|.|+|.-|+.++....
T Consensus 19 sSnvFamf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL 94 (171)
T KOG0031|consen 19 SSNVFAMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKL 94 (171)
T ss_pred cchHHHHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHh
Confidence 34456677889999999999999999999999999999999999999999999999765 78999999999998666
Q ss_pred ccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 030421 102 DNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMT 171 (177)
Q Consensus 102 ~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 171 (177)
.....++.+..+|..||.+++|.|..+.|+.+|...|..+++++|+.+++.+-.+..|.|+|..|...+.
T Consensus 95 ~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 95 NGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred cCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 6666778999999999999999999999999999999999999999999999999999999999999887
No 7
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.90 E-value=4.6e-22 Score=134.79 Aligned_cols=134 Identities=25% Similarity=0.393 Sum_probs=124.5
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhC-CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHH
Q 030421 33 NVQEMRQVFDKFDTNKDGKISQDEYNSALSVLG-KGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQ 111 (177)
Q Consensus 33 ~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 111 (177)
.-.++...|...|++..|.|+.+|+..+|.... -+.+.+.++.++..+|.+.+|+|+++||..++..+ ..|+
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i-------~~Wr 127 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI-------NQWR 127 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-------HHHH
Confidence 455788999999999999999999999998654 57889999999999999999999999999999965 7899
Q ss_pred HHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 030421 112 GAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRN 173 (177)
Q Consensus 112 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~ 173 (177)
.+|+.||.|++|.|+..||+++|..+|..++++-.+.+++.++....|.|.+++|++++...
T Consensus 128 ~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 128 NVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL 189 (221)
T ss_pred HHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998879999999999998764
No 8
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.87 E-value=7.6e-21 Score=129.16 Aligned_cols=144 Identities=31% Similarity=0.529 Sum_probs=122.8
Q ss_pred CcCCcchHHHHHHHHHhhcCC-CCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCc-ccHHHHHHHHHhccccc
Q 030421 27 PRASRSNVQEMRQVFDKFDTN-KDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGY-IDFKEFIEMMHDMGDNR 104 (177)
Q Consensus 27 ~~~~~~~~~~l~~~f~~~d~~-~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~-i~~~ef~~~~~~~~~~~ 104 (177)
..++..++..|...|.+++.. ++|+++.+||..+... ...+ ...+++..++.+++|. |+|++|+..+.......
T Consensus 25 ~~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~-~~Np---~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~ 100 (187)
T KOG0034|consen 25 TQFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPEL-ALNP---LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKA 100 (187)
T ss_pred cccCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHH-hcCc---HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCc
Confidence 458899999999999999999 9999999999998833 2222 3567888888888887 99999999999887777
Q ss_pred cchhHHHHHHHhhccCCCCccCHHHHHHHHHHh-CCCCC--H----HHHHHHHHhhcCCCCCcccHHHHHHHHHhhc
Q 030421 105 VKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM-GEKYS--L----DSCRKMIRGVDADGDGLIDMDEFMTMMTRNV 174 (177)
Q Consensus 105 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~--~----~~~~~~~~~~d~~~~g~is~~ef~~~l~~~~ 174 (177)
...++++.+|+.||.+++|.|+++|+.+++..+ +...+ + +.++.++..+|.++||.||++||.+.+.+.+
T Consensus 101 ~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P 177 (187)
T KOG0034|consen 101 SKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQP 177 (187)
T ss_pred cHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCc
Confidence 777799999999999999999999999999987 43344 3 3467789999999999999999999998764
No 9
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.86 E-value=4.5e-20 Score=116.38 Aligned_cols=143 Identities=27% Similarity=0.479 Sum_probs=126.2
Q ss_pred CCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCC--CCCcccHHHHHHHHHhccccc--
Q 030421 29 ASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTD--KDGYIDFKEFIEMMHDMGDNR-- 104 (177)
Q Consensus 29 ~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~--~~g~i~~~ef~~~~~~~~~~~-- 104 (177)
.++++..+++++|..||..++|.|+..++..+++.+|..++..++...+..+.++ +-..|+|++|+-++..+...+
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q 84 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQ 84 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcccc
Confidence 4556678999999999999999999999999999999999999999999888776 346899999999998765443
Q ss_pred cchhHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 105 VKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172 (177)
Q Consensus 105 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 172 (177)
...+..-.-++.||++++|.|...|++++|..+|+.+++++++.++.-. .|.+|.|.|+.|+..+.+
T Consensus 85 ~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 85 GTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIMS 151 (152)
T ss_pred CcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHHhc
Confidence 3345677788999999999999999999999999999999999999876 588899999999988753
No 10
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.83 E-value=2.4e-19 Score=121.94 Aligned_cols=144 Identities=24% Similarity=0.473 Sum_probs=118.0
Q ss_pred CCcchHHHHHHHHHhhcCC-CCCcccHHHHHHHHHhhCC-CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccc
Q 030421 29 ASRSNVQEMRQVFDKFDTN-KDGKISQDEYNSALSVLGK-GISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVK 106 (177)
Q Consensus 29 ~~~~~~~~l~~~f~~~d~~-~~g~l~~~e~~~~l~~l~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 106 (177)
.+....+++..+|..|-.+ .+|.++.++|+.++..+.. .-+......+|+.+|.+++|.|+|.||+..+.. ......
T Consensus 20 ~t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~-~~rGt~ 98 (193)
T KOG0044|consen 20 QTKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSL-TSRGTL 98 (193)
T ss_pred hcCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHH-HcCCcH
Confidence 3344445556666666555 4899999999999999863 556677899999999999999999999999995 455567
Q ss_pred hhHHHHHHHhhccCCCCccCHHHHHHHHHHh----CC-------CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 030421 107 KNDIQGAFQLFDLNGDKKISAEELMEVLRKM----GE-------KYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRN 173 (177)
Q Consensus 107 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~----~~-------~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~ 173 (177)
++.++.+|+.||.|++|.|+++|+..++..+ |. ...++.++.+|+.+|.|+||.||++||.......
T Consensus 99 eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d 176 (193)
T KOG0044|consen 99 EEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKAD 176 (193)
T ss_pred HHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhC
Confidence 7899999999999999999999999999875 31 2245668999999999999999999999876543
No 11
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.78 E-value=1.5e-17 Score=122.27 Aligned_cols=139 Identities=24% Similarity=0.442 Sum_probs=127.2
Q ss_pred CCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCC-CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccch
Q 030421 29 ASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKG-ISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKK 107 (177)
Q Consensus 29 ~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 107 (177)
..++...+++.+|+.+|.+++|.|+..++.+.+..+..+ ...+....+|+.+|.+.+|.|+|.+|...+. ..+
T Consensus 8 ~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~------~~E 81 (463)
T KOG0036|consen 8 TDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLD------NKE 81 (463)
T ss_pred CcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHH------HhH
Confidence 344455689999999999999999999999999998876 7788899999999999999999999999988 356
Q ss_pred hHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 030421 108 NDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRN 173 (177)
Q Consensus 108 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~ 173 (177)
.++..+|+.+|.++||.|+.+|+...|+.+|.+++.+++.+++..+|+++++.|+++||...+.-.
T Consensus 82 ~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~ 147 (463)
T KOG0036|consen 82 LELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLY 147 (463)
T ss_pred HHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcC
Confidence 688999999999999999999999999999999999999999999999999999999999887543
No 12
>PLN02964 phosphatidylserine decarboxylase
Probab=99.57 E-value=7.2e-14 Score=110.73 Aligned_cols=121 Identities=26% Similarity=0.418 Sum_probs=104.0
Q ss_pred CCCcCCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhC-CCCCHHH---HHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 030421 25 SVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLG-KGISKAE---MAKSFRFIDTDKDGYIDFKEFIEMMHDM 100 (177)
Q Consensus 25 ~~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~-~~~~~~~---~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 100 (177)
....++..++.++++.|..+|++++|.+ +..+++.+| ..+++.+ ++.+|..+|.+++|.|+++||+.++..+
T Consensus 133 ~~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l 208 (644)
T PLN02964 133 DLFDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF 208 (644)
T ss_pred cHhhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh
Confidence 3467888899999999999999999997 888899999 5788876 8999999999999999999999999865
Q ss_pred cccccchhHHHHHHHhhccCCCCccCHHHHHHHHHH-------------hCCCCCH-HHHHHHH
Q 030421 101 GDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRK-------------MGEKYSL-DSCRKMI 150 (177)
Q Consensus 101 ~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~-------------~~~~~~~-~~~~~~~ 150 (177)
. ....++++..+|+.+|.|++|.|+.+||+.++.. +|..++. ++++.|+
T Consensus 209 g-~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~ii 271 (644)
T PLN02964 209 G-NLVAANKKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEALGVSDKLNAMI 271 (644)
T ss_pred c-cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcccchhhHHHHH
Confidence 3 3456678999999999999999999999999998 5666665 5566665
No 13
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1.5e-13 Score=98.74 Aligned_cols=138 Identities=21% Similarity=0.361 Sum_probs=113.5
Q ss_pred chHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCC-CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccch---
Q 030421 32 SNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGK-GISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKK--- 107 (177)
Q Consensus 32 ~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~--- 107 (177)
..+.+-.+.|+..|.+++|.++.+||..+|.--.+ .+..-.++..+...|.|++|.|+++||+.-+..........
T Consensus 160 km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv 239 (325)
T KOG4223|consen 160 KMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWV 239 (325)
T ss_pred HHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccc
Confidence 34556677899999999999999999998865443 33444577788889999999999999999887544322111
Q ss_pred -hHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 030421 108 -NDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTM 169 (177)
Q Consensus 108 -~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~ 169 (177)
.+-...+..+|.|++|+++.+|+++++...+......+++.|+...|.|+||++|++|.+.-
T Consensus 240 ~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~~ 302 (325)
T KOG4223|consen 240 LTEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILEH 302 (325)
T ss_pred cccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhhC
Confidence 23557788999999999999999999988888888999999999999999999999998763
No 14
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.50 E-value=1.1e-13 Score=83.50 Aligned_cols=67 Identities=15% Similarity=0.360 Sum_probs=62.2
Q ss_pred hHHHHHHHhhcc-CCCCccCHHHHHHHHHH-hCCCCCH-HHHHHHHHhhcCCCCCcccHHHHHHHHHhhc
Q 030421 108 NDIQGAFQLFDL-NGDKKISAEELMEVLRK-MGEKYSL-DSCRKMIRGVDADGDGLIDMDEFMTMMTRNV 174 (177)
Q Consensus 108 ~~~~~~f~~~D~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~g~is~~ef~~~l~~~~ 174 (177)
..+..+|+.||. +++|+|+..||+.++.. +|..++. ++++.+++.+|.|++|.|+|+||+.++....
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 468899999999 99999999999999999 8888888 9999999999999999999999999987654
No 15
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.50 E-value=2.6e-12 Score=87.73 Aligned_cols=131 Identities=20% Similarity=0.347 Sum_probs=113.0
Q ss_pred cCCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccch
Q 030421 28 RASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKK 107 (177)
Q Consensus 28 ~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 107 (177)
..+...++.++.+...+|.+++|.|.++||..+.+.+ ..++.+|+.+|.|++|+|+..|+...+..+ ....+.
T Consensus 87 ~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i------~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~-Gy~Lsp 159 (221)
T KOG0037|consen 87 TWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI------NQWRNVFRTYDRDRSGTIDSSELRQALTQL-GYRLSP 159 (221)
T ss_pred CCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH------HHHHHHHHhcccCCCCcccHHHHHHHHHHc-CcCCCH
Confidence 4445566677888899999999999999999999876 468999999999999999999999999964 555677
Q ss_pred hHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCc--ccHHHHHHHHH
Q 030421 108 NDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGL--IDMDEFMTMMT 171 (177)
Q Consensus 108 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~--is~~ef~~~l~ 171 (177)
..+..+++.||..++|.|..++|.++|..+ ..+.+.|+..|.+.+|. |+|++|+.+..
T Consensus 160 q~~~~lv~kyd~~~~g~i~FD~FI~ccv~L------~~lt~~Fr~~D~~q~G~i~~~y~dfl~~t~ 219 (221)
T KOG0037|consen 160 QFYNLLVRKYDRFGGGRIDFDDFIQCCVVL------QRLTEAFRRRDTAQQGSITISYDDFLQMTM 219 (221)
T ss_pred HHHHHHHHHhccccCCceeHHHHHHHHHHH------HHHHHHHHHhccccceeEEEeHHHHHHHhh
Confidence 889999999998889999999999999654 56778899999998886 77999998764
No 16
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=2.9e-13 Score=97.32 Aligned_cols=142 Identities=20% Similarity=0.340 Sum_probs=114.0
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccc-------ccc
Q 030421 33 NVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGD-------NRV 105 (177)
Q Consensus 33 ~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~-------~~~ 105 (177)
...++..++.++|.+++|.|+..++..++....-.....+..+-|..++.+.+|.|+|++++..+..... ...
T Consensus 75 ~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~ 154 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEED 154 (325)
T ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchh
Confidence 3468899999999999999999999999877654455566777788899999999999999998764210 000
Q ss_pred c------hhHHHHHHHhhccCCCCccCHHHHHHHHHHhC-CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc
Q 030421 106 K------KNDIQGAFQLFDLNGDKKISAEELMEVLRKMG-EKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRNV 174 (177)
Q Consensus 106 ~------~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~~ 174 (177)
. ..+-++-|+..|.|++|.+|++||..+|..-- ..+..-.+.+.+..+|.|+||.|+++||+.-+-+..
T Consensus 155 ~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~ 230 (325)
T KOG4223|consen 155 NEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHE 230 (325)
T ss_pred cHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhcc
Confidence 0 12357789999999999999999999997653 355666788889999999999999999998776543
No 17
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.48 E-value=2.1e-13 Score=78.25 Aligned_cols=62 Identities=40% Similarity=0.700 Sum_probs=54.2
Q ss_pred HHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHH----HHHHHHhhcCCCCCcccHHHHHHHH
Q 030421 109 DIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDS----CRKMIRGVDADGDGLIDMDEFMTMM 170 (177)
Q Consensus 109 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~----~~~~~~~~d~~~~g~is~~ef~~~l 170 (177)
+++.+|+.+|.+++|.|+.+||+.++..++...+... ++.+++.+|.|++|.|+++||++++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4788999999999999999999999999987665544 5555999999999999999999875
No 18
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.45 E-value=2.3e-12 Score=86.01 Aligned_cols=104 Identities=29% Similarity=0.549 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCC-----CHH
Q 030421 70 KAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKY-----SLD 144 (177)
Q Consensus 70 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~-----~~~ 144 (177)
..++..+|..+|.+++|.|+..++..++..+... .....+..++..+|.+++|.|+.+||..++...+... +.+
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~-~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~ 85 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQN-PTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSE 85 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHH
Confidence 3568899999999999999999999999975544 5678999999999999999999999999999875432 356
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhhc
Q 030421 145 SCRKMIRGVDADGDGLIDMDEFMTMMTRNV 174 (177)
Q Consensus 145 ~~~~~~~~~d~~~~g~is~~ef~~~l~~~~ 174 (177)
++.++|+.+|.|++|.|+..++...|....
T Consensus 86 el~eaF~~fD~d~~G~Is~~el~~~l~~lg 115 (151)
T KOG0027|consen 86 ELKEAFRVFDKDGDGFISASELKKVLTSLG 115 (151)
T ss_pred HHHHHHHHHccCCCCcCcHHHHHHHHHHhC
Confidence 999999999999999999999999987643
No 19
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.43 E-value=1.3e-12 Score=83.51 Aligned_cols=102 Identities=24% Similarity=0.484 Sum_probs=86.9
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHh-CCCCCHHHH----HH
Q 030421 74 AKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM-GEKYSLDSC----RK 148 (177)
Q Consensus 74 ~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~----~~ 148 (177)
+++...+..++.|.++|++|+..+..+.......-++..+|+.||-|+++.|...++...+..+ ...++++++ ++
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ek 153 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEK 153 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 5666777899999999999999998776665556678899999999999999999999999988 347887775 56
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHhhcc
Q 030421 149 MIRGVDADGDGLIDMDEFMTMMTRNVK 175 (177)
Q Consensus 149 ~~~~~d~~~~g~is~~ef~~~l~~~~~ 175 (177)
++.+.|.|++|++++.+|...+.+.+.
T Consensus 154 vieEAD~DgDgkl~~~eFe~~i~raPD 180 (189)
T KOG0038|consen 154 VIEEADLDGDGKLSFAEFEHVILRAPD 180 (189)
T ss_pred HHHHhcCCCCCcccHHHHHHHHHhCcc
Confidence 677789999999999999999887654
No 20
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.42 E-value=7.2e-12 Score=93.60 Aligned_cols=135 Identities=20% Similarity=0.390 Sum_probs=107.2
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHh-hCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccc---------
Q 030421 35 QEMRQVFDKFDTNKDGKISQDEYNSALSV-LGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNR--------- 104 (177)
Q Consensus 35 ~~l~~~f~~~d~~~~g~l~~~e~~~~l~~-l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~--------- 104 (177)
..|...|..+|..++|.|+..++..++.. +|..++...+..-+ ...+.+|.|.|......+..-....
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kl--a~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKL--ANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhc--cCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 36777899999999999999999999976 46777765544333 4455678899888777764211100
Q ss_pred --cchhHHHHHHHhhccCCCCccCHHHHHHHHHHh----CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 030421 105 --VKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM----GEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMT 171 (177)
Q Consensus 105 --~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 171 (177)
.....+..+|+.+|.|++|.|+.+||+++++-+ ...++++++.++.+.+|-|+||.|++.||+..+.
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 122458889999999999999999999999865 4578899999999999999999999999998864
No 21
>PTZ00183 centrin; Provisional
Probab=99.42 E-value=8.5e-12 Score=83.75 Aligned_cols=101 Identities=30% Similarity=0.451 Sum_probs=87.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHh-CCCCCHHHHHHH
Q 030421 71 AEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM-GEKYSLDSCRKM 149 (177)
Q Consensus 71 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~ 149 (177)
..+..+|..+|.+++|.|++++|..++..+. .......+..+|..+|.+++|.|+.+||..++... ......+.+..+
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g-~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~ 95 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLG-FEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKA 95 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 4577789999999999999999999998653 33456689999999999999999999999988764 345567889999
Q ss_pred HHhhcCCCCCcccHHHHHHHHHh
Q 030421 150 IRGVDADGDGLIDMDEFMTMMTR 172 (177)
Q Consensus 150 ~~~~d~~~~g~is~~ef~~~l~~ 172 (177)
|+.+|.+++|.|+.++|...+..
T Consensus 96 F~~~D~~~~G~i~~~e~~~~l~~ 118 (158)
T PTZ00183 96 FRLFDDDKTGKISLKNLKRVAKE 118 (158)
T ss_pred HHHhCCCCCCcCcHHHHHHHHHH
Confidence 99999999999999999999875
No 22
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.41 E-value=2.2e-12 Score=88.08 Aligned_cols=103 Identities=30% Similarity=0.495 Sum_probs=88.3
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccc----------c
Q 030421 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGD----------N 103 (177)
Q Consensus 34 ~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~----------~ 103 (177)
......+|..+|.+++|.|++.||..++..+......+.++..|+.+|.+++|.|+++|++.++..+.. .
T Consensus 63 ~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~ 142 (193)
T KOG0044|consen 63 SKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDE 142 (193)
T ss_pred HHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCccc
Confidence 345667889999999999999999999988888888888999999999999999999999999764331 2
Q ss_pred ccchhHHHHHHHhhccCCCCccCHHHHHHHHHH
Q 030421 104 RVKKNDIQGAFQLFDLNGDKKISAEELMEVLRK 136 (177)
Q Consensus 104 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 136 (177)
...+.....+|..+|.|++|.||.+||...+..
T Consensus 143 ~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 143 ETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred ccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 234567999999999999999999999888854
No 23
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.41 E-value=2.1e-12 Score=77.96 Aligned_cols=66 Identities=29% Similarity=0.518 Sum_probs=60.9
Q ss_pred hHHHHHHHhhc-cCCCC-ccCHHHHHHHHHH-----hCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 030421 108 NDIQGAFQLFD-LNGDK-KISAEELMEVLRK-----MGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRN 173 (177)
Q Consensus 108 ~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~ 173 (177)
..+..+|+.|| .+++| .|+.+||+.+|+. +|...++++++.+++.+|.|++|.|+|++|+.++...
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 46889999998 79999 5999999999999 8888899999999999999999999999999988764
No 24
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.36 E-value=3.3e-11 Score=79.75 Aligned_cols=99 Identities=22% Similarity=0.387 Sum_probs=87.7
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHhC-CCCCHHHHHHHH
Q 030421 72 EMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMG-EKYSLDSCRKMI 150 (177)
Q Consensus 72 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~ 150 (177)
+++..|..+|++++|.|+..++..++.. .........+..+|..+|. ++|.|+..+|..+|...- ..-+.+++..+|
T Consensus 21 ~lkeaF~l~D~d~~G~I~~~el~~ilr~-lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF 98 (160)
T COG5126 21 ELKEAFQLFDRDSDGLIDRNELGKILRS-LGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAF 98 (160)
T ss_pred HHHHHHHHhCcCCCCCCcHHHHHHHHHH-cCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 4677788999999999999999999984 4555677899999999999 999999999999998764 456689999999
Q ss_pred HhhcCCCCCcccHHHHHHHHHh
Q 030421 151 RGVDADGDGLIDMDEFMTMMTR 172 (177)
Q Consensus 151 ~~~d~~~~g~is~~ef~~~l~~ 172 (177)
+.+|.|++|+|+..++...+..
T Consensus 99 ~~fD~d~dG~Is~~eL~~vl~~ 120 (160)
T COG5126 99 KLFDKDHDGYISIGELRRVLKS 120 (160)
T ss_pred HHhCCCCCceecHHHHHHHHHh
Confidence 9999999999999999988874
No 25
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.35 E-value=6.3e-12 Score=72.05 Aligned_cols=62 Identities=42% Similarity=0.747 Sum_probs=49.9
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHH----HHHHHHHhhcCCCCCcccHHHHHHHH
Q 030421 36 EMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKA----EMAKSFRFIDTDKDGYIDFKEFIEMM 97 (177)
Q Consensus 36 ~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~----~~~~~~~~~d~~~~g~i~~~ef~~~~ 97 (177)
+++++|..+|.+++|+|+.+||..++..++...+.. .+..+|+.+|.+++|.|+|+||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 477899999999999999999999999988665544 34555888888888888888888764
No 26
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.33 E-value=7.5e-12 Score=75.56 Aligned_cols=67 Identities=21% Similarity=0.400 Sum_probs=60.3
Q ss_pred HHHHHHHhhcc-CC-CCccCHHHHHHHHHH---hCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhcc
Q 030421 109 DIQGAFQLFDL-NG-DKKISAEELMEVLRK---MGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRNVK 175 (177)
Q Consensus 109 ~~~~~f~~~D~-~~-~g~i~~~e~~~~l~~---~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~~~ 175 (177)
.+-.+|..||. ++ +|+|+.+||+.++.. +|..+++++++++++.+|.|++|.|+|++|+.++.....
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~ 82 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALAL 82 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 56788999997 67 899999999999973 688999999999999999999999999999999887643
No 27
>PTZ00184 calmodulin; Provisional
Probab=99.33 E-value=6.4e-11 Score=78.59 Aligned_cols=100 Identities=25% Similarity=0.455 Sum_probs=84.8
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHhC-CCCCHHHHHHHH
Q 030421 72 EMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMG-EKYSLDSCRKMI 150 (177)
Q Consensus 72 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~ 150 (177)
.+...|..+|.+++|.|++++|..++..... ....+.+..+|..+|.+++|.|+.++|..++.... .....+.+..+|
T Consensus 12 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F 90 (149)
T PTZ00184 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAF 90 (149)
T ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHHHHhCC-CCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 4667888899999999999999999875433 34456899999999999999999999999988653 344567789999
Q ss_pred HhhcCCCCCcccHHHHHHHHHh
Q 030421 151 RGVDADGDGLIDMDEFMTMMTR 172 (177)
Q Consensus 151 ~~~d~~~~g~is~~ef~~~l~~ 172 (177)
+.+|.+++|.|+.++|..++..
T Consensus 91 ~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 91 KVFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred HhhCCCCCCeEeHHHHHHHHHH
Confidence 9999999999999999988764
No 28
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.31 E-value=1.2e-11 Score=74.53 Aligned_cols=69 Identities=16% Similarity=0.398 Sum_probs=62.6
Q ss_pred chHHHHHHHHHhhcC-CCCCcccHHHHHHHHHh-hCCCCCH-HHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 030421 32 SNVQEMRQVFDKFDT-NKDGKISQDEYNSALSV-LGKGISK-AEMAKSFRFIDTDKDGYIDFKEFIEMMHDM 100 (177)
Q Consensus 32 ~~~~~l~~~f~~~d~-~~~g~l~~~e~~~~l~~-l~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 100 (177)
..+..+..+|..+|+ +++|+|+..||+.++.. +|..++. .++..+++.+|.+++|.|+|+||+.++..+
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 346789999999999 99999999999999988 8876777 899999999999999999999999998753
No 29
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.29 E-value=2.4e-11 Score=74.57 Aligned_cols=65 Identities=18% Similarity=0.459 Sum_probs=58.6
Q ss_pred hHHHHHHHhhcc-CC-CCccCHHHHHHHHHH-----hCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 108 NDIQGAFQLFDL-NG-DKKISAEELMEVLRK-----MGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172 (177)
Q Consensus 108 ~~~~~~f~~~D~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 172 (177)
..+..+|..||. ++ +|.|+.+||+.++.. +|..++..+++.+++.+|.+++|.|+|++|+.++..
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 568899999997 87 699999999999986 466788999999999999999999999999988765
No 30
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.28 E-value=3.2e-11 Score=73.74 Aligned_cols=68 Identities=26% Similarity=0.563 Sum_probs=59.7
Q ss_pred hhHHHHHHHhhc-cCCCC-ccCHHHHHHHHHH-hCC----CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc
Q 030421 107 KNDIQGAFQLFD-LNGDK-KISAEELMEVLRK-MGE----KYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRNV 174 (177)
Q Consensus 107 ~~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~-~~~----~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~~ 174 (177)
.+.++.+|+.|| .+++| .|+..||+.+|+. +|. ..+.++++.+++.+|.+++|.|+|++|+.++....
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 357899999997 99999 5999999999986 543 45889999999999999999999999999887654
No 31
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.28 E-value=3.1e-11 Score=73.79 Aligned_cols=66 Identities=23% Similarity=0.442 Sum_probs=57.2
Q ss_pred hHHHHHHHhhc-cCCCC-ccCHHHHHHHHHHh-----CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 030421 108 NDIQGAFQLFD-LNGDK-KISAEELMEVLRKM-----GEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRN 173 (177)
Q Consensus 108 ~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~ 173 (177)
..+..+|+.|| .+++| +|+..||+.++... +...+..+++.+++.+|.|++|.|+|+||+.++...
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 46788899999 78998 59999999999773 334477899999999999999999999999998764
No 32
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.28 E-value=1.8e-11 Score=67.23 Aligned_cols=52 Identities=44% Similarity=0.735 Sum_probs=48.9
Q ss_pred CCCccCHHHHHHHHHHhCCC-CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 121 GDKKISAEELMEVLRKMGEK-YSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172 (177)
Q Consensus 121 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 172 (177)
++|.|+.++|+.+|..+|.. +++++++.++..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888998 99999999999999999999999999999865
No 33
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.28 E-value=6.9e-11 Score=80.69 Aligned_cols=100 Identities=31% Similarity=0.512 Sum_probs=84.1
Q ss_pred HHHHHhhcCCCCCc-ccHHHHHHHHHhhCCCCCHH-HHHHHHHhhcCCCCCcccHHHHHHHHHhccccccc------hhH
Q 030421 38 RQVFDKFDTNKDGK-ISQDEYNSALSVLGKGISKA-EMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVK------KND 109 (177)
Q Consensus 38 ~~~f~~~d~~~~g~-l~~~e~~~~l~~l~~~~~~~-~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~------~~~ 109 (177)
.+++..++.+++|. |++++|...+..+....+.. .++-.|+.+|.+++|.|+.+++..++..+...... ...
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i 148 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDI 148 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHH
Confidence 45778899988888 99999999998876555544 89999999999999999999999999876653333 345
Q ss_pred HHHHHHhhccCCCCccCHHHHHHHHHHh
Q 030421 110 IQGAFQLFDLNGDKKISAEELMEVLRKM 137 (177)
Q Consensus 110 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 137 (177)
+...|..+|.+++|.|+.+||..++...
T Consensus 149 ~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 149 VDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 7888999999999999999999998653
No 34
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.24 E-value=9e-11 Score=70.84 Aligned_cols=67 Identities=22% Similarity=0.409 Sum_probs=61.6
Q ss_pred hHHHHHHHHHhhc-CCCCC-cccHHHHHHHHHh-----hCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 33 NVQEMRQVFDKFD-TNKDG-KISQDEYNSALSV-----LGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHD 99 (177)
Q Consensus 33 ~~~~l~~~f~~~d-~~~~g-~l~~~e~~~~l~~-----l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 99 (177)
.+..+.++|..+| .+++| .|+..+|+.+++. +|...++.++..+++.+|.+++|.|+|++|+.++..
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4678999999998 79999 6999999999998 888889999999999999999999999999998874
No 35
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.24 E-value=4.5e-11 Score=72.48 Aligned_cols=69 Identities=20% Similarity=0.408 Sum_probs=60.6
Q ss_pred hhHHHHHHHhhcc--CCCCccCHHHHHHHHHH-hCCC----CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhcc
Q 030421 107 KNDIQGAFQLFDL--NGDKKISAEELMEVLRK-MGEK----YSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRNVK 175 (177)
Q Consensus 107 ~~~~~~~f~~~D~--~~~g~i~~~e~~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~~~ 175 (177)
...++.+|..+|. +++|.|+.+||..++.. +|.. .+.++++.++..++.+++|.|+|++|+.++....+
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~~ 82 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLAV 82 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHHH
Confidence 3568889999999 89999999999999986 5543 35899999999999999999999999999887655
No 36
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.22 E-value=9.8e-11 Score=67.18 Aligned_cols=60 Identities=30% Similarity=0.400 Sum_probs=54.9
Q ss_pred HHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 111 QGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172 (177)
Q Consensus 111 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 172 (177)
+.+|..+|.+++|.|+.+|++.++...| .+.+++..++..++.+++|.|++++|+..+..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 4689999999999999999999999987 48889999999999999999999999988754
No 37
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.21 E-value=1.5e-10 Score=71.36 Aligned_cols=70 Identities=29% Similarity=0.456 Sum_probs=63.7
Q ss_pred cCCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 28 RASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHD 99 (177)
Q Consensus 28 ~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 99 (177)
.++..++..+..+|..+|.+++|.|+.+++..+++.++ ++..++..++..++.+.+|.|+|++|+.++..
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 45778899999999999999999999999999998865 67889999999999999999999999998864
No 38
>PLN02964 phosphatidylserine decarboxylase
Probab=99.20 E-value=3.5e-10 Score=90.15 Aligned_cols=120 Identities=13% Similarity=0.316 Sum_probs=91.4
Q ss_pred CCcccHHHHHHHHHhhCCCC---CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcc-ccccchh--HHHHHHHhhccCCC
Q 030421 49 DGKISQDEYNSALSVLGKGI---SKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMG-DNRVKKN--DIQGAFQLFDLNGD 122 (177)
Q Consensus 49 ~g~l~~~e~~~~l~~l~~~~---~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~-~~~~~~~--~~~~~f~~~D~~~~ 122 (177)
...++.+++......--..+ ..+++...|..+|.+++|.+ +..++..+. ......+ .++.+|..+|.+++
T Consensus 118 ~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~Dgd 193 (644)
T PLN02964 118 TNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDED 193 (644)
T ss_pred cCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCC
Confidence 44566777665543310122 23457778899999999987 444444333 1222222 38999999999999
Q ss_pred CccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 123 KKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172 (177)
Q Consensus 123 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 172 (177)
|.|+.+||..++..++...+++++..+|+.+|.|++|.|+++||...+..
T Consensus 194 G~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 194 GQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred CeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 99999999999999988889999999999999999999999999999876
No 39
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.19 E-value=1.5e-10 Score=71.32 Aligned_cols=65 Identities=28% Similarity=0.344 Sum_probs=59.1
Q ss_pred hhHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 030421 107 KNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRN 173 (177)
Q Consensus 107 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~ 173 (177)
...++.+|..+|.+++|.|+.+|++.++...| ++.+++..++..++.+++|.|+|++|+.++...
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 35788999999999999999999999999876 788999999999999999999999999987654
No 40
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.17 E-value=2.8e-10 Score=68.80 Aligned_cols=67 Identities=19% Similarity=0.416 Sum_probs=57.7
Q ss_pred hHHHHHHHh-hccCCCC-ccCHHHHHHHHHHh-----CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc
Q 030421 108 NDIQGAFQL-FDLNGDK-KISAEELMEVLRKM-----GEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRNV 174 (177)
Q Consensus 108 ~~~~~~f~~-~D~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~~ 174 (177)
..+..+|+. +|.+++| .|+.+||+.++... +...++.+++.+++.+|.|++|.|+|+||+.++....
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 467889988 6787876 99999999999886 3456778999999999999999999999999987654
No 41
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.16 E-value=2.9e-10 Score=63.79 Aligned_cols=61 Identities=49% Similarity=0.834 Sum_probs=57.3
Q ss_pred HHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 030421 110 IQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170 (177)
Q Consensus 110 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l 170 (177)
+..+|..+|.+++|.|+.+||..++..++...+.+.+..++..++.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999998865
No 42
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=1.3e-09 Score=71.11 Aligned_cols=102 Identities=25% Similarity=0.379 Sum_probs=87.9
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHHHHHHHHHH-hCCCCCHHHHHHH
Q 030421 71 AEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRK-MGEKYSLDSCRKM 149 (177)
Q Consensus 71 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~ 149 (177)
.+++..|..+++++.|+|+++++...+..+ ......+.+..+...+|.++.|.|+.++|+.++.. ++..-+.+++..+
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmral-GFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~a 111 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRAL-GFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKA 111 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHc-CCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHH
Confidence 568888999999999999999997777754 34445578889999999999999999999999765 5776699999999
Q ss_pred HHhhcCCCCCcccHHHHHHHHHhh
Q 030421 150 IRGVDADGDGLIDMDEFMTMMTRN 173 (177)
Q Consensus 150 ~~~~d~~~~g~is~~ef~~~l~~~ 173 (177)
|+.+|.|++|.||..+|.......
T Consensus 112 frl~D~D~~Gkis~~~lkrvakeL 135 (172)
T KOG0028|consen 112 FRLFDDDKTGKISQRNLKRVAKEL 135 (172)
T ss_pred HHcccccCCCCcCHHHHHHHHHHh
Confidence 999999999999999998876543
No 43
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.11 E-value=7.6e-10 Score=67.63 Aligned_cols=67 Identities=24% Similarity=0.442 Sum_probs=58.6
Q ss_pred hHHHHHHHHHhhc-CCCCC-cccHHHHHHHHHh-hC----CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 33 NVQEMRQVFDKFD-TNKDG-KISQDEYNSALSV-LG----KGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHD 99 (177)
Q Consensus 33 ~~~~l~~~f~~~d-~~~~g-~l~~~e~~~~l~~-l~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 99 (177)
.+..++++|..+| .+++| .|+..+|..+++. +| ..++..++..++..+|.+++|.|+|++|+.++..
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 3568999999997 99999 4999999999975 44 3568899999999999999999999999998874
No 44
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.10 E-value=8.2e-10 Score=66.65 Aligned_cols=69 Identities=20% Similarity=0.476 Sum_probs=61.0
Q ss_pred chHHHHHHHHHhhcC-CC-CCcccHHHHHHHHH---hhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 030421 32 SNVQEMRQVFDKFDT-NK-DGKISQDEYNSALS---VLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDM 100 (177)
Q Consensus 32 ~~~~~l~~~f~~~d~-~~-~g~l~~~e~~~~l~---~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 100 (177)
..+..+..+|.+++. ++ +|+|+.+||..++. .+|..++.+++..+++.+|.+++|.|+|++|+.++..+
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 456788899999998 56 89999999999996 36888999999999999999999999999999988743
No 45
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=99.10 E-value=1.5e-09 Score=81.86 Aligned_cols=135 Identities=16% Similarity=0.323 Sum_probs=105.3
Q ss_pred cchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhh----cCCCCCcccHHHHHHHHHhccccccc
Q 030421 31 RSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFI----DTDKDGYIDFKEFIEMMHDMGDNRVK 106 (177)
Q Consensus 31 ~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~----d~~~~g~i~~~ef~~~~~~~~~~~~~ 106 (177)
-+....+..-|..+|.|.+|.|+.+++...-. ..++...+.+||..+ -...+|.++|++|+.++... ..+..
T Consensus 274 ~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d---~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~-e~k~t 349 (493)
T KOG2562|consen 274 YEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD---HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE-EDKDT 349 (493)
T ss_pred HHHHHHHHHHHhhhccccccccCHHHHHHHhc---cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHh-ccCCC
Confidence 33344455558889999999999999976553 356778899999943 33457899999999999864 44455
Q ss_pred hhHHHHHHHhhccCCCCccCHHHHHHHHHHh-------CC-CCC-HHHHHHHHHhhcCCCCCcccHHHHHHH
Q 030421 107 KNDIQGAFQLFDLNGDKKISAEELMEVLRKM-------GE-KYS-LDSCRKMIRGVDADGDGLIDMDEFMTM 169 (177)
Q Consensus 107 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-------~~-~~~-~~~~~~~~~~~d~~~~g~is~~ef~~~ 169 (177)
...++..|+.+|.+++|.|+..|++.+.... |. .++ ++...++++-+.+..++.|++++|...
T Consensus 350 ~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~s 421 (493)
T KOG2562|consen 350 PASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKGS 421 (493)
T ss_pred ccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhhc
Confidence 6789999999999999999999999888653 22 222 455788888888899999999999873
No 46
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.09 E-value=8.7e-10 Score=67.62 Aligned_cols=67 Identities=16% Similarity=0.422 Sum_probs=59.3
Q ss_pred hHHHHHHHHHhhcC-CC-CCcccHHHHHHHHHh-----hCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 33 NVQEMRQVFDKFDT-NK-DGKISQDEYNSALSV-----LGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHD 99 (177)
Q Consensus 33 ~~~~l~~~f~~~d~-~~-~g~l~~~e~~~~l~~-----l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 99 (177)
....++.+|..+|. ++ +|.|+..|+..++.. +|..++..++..++..+|.+++|.|+|++|+.++..
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 35688999999997 87 699999999999976 466788999999999999999999999999998874
No 47
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=99.08 E-value=3.5e-09 Score=89.15 Aligned_cols=140 Identities=20% Similarity=0.493 Sum_probs=111.3
Q ss_pred CCCcCCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCC--HH-----HHHHHHHhhcCCCCCcccHHHHHHHH
Q 030421 25 SVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGIS--KA-----EMAKSFRFIDTDKDGYIDFKEFIEMM 97 (177)
Q Consensus 25 ~~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~--~~-----~~~~~~~~~d~~~~g~i~~~ef~~~~ 97 (177)
...+.+...+.++.-+|..||.+.+|.++..+|..||+.+|+.++ ++ +++.++..+|++.+|+|+..+|+.+|
T Consensus 2243 n~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afm 2322 (2399)
T KOG0040|consen 2243 NHNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFM 2322 (2399)
T ss_pred ccCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHH
Confidence 456778899999999999999999999999999999999997763 22 68999999999999999999999998
Q ss_pred Hhcc-ccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh----cC----CCCCcccHHHHHH
Q 030421 98 HDMG-DNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGV----DA----DGDGLIDMDEFMT 168 (177)
Q Consensus 98 ~~~~-~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~----d~----~~~g~is~~ef~~ 168 (177)
.... ..-.+...|..+|+.+|. +.-+|+.+++.+.| +.++++-++..+ ++ ...+.+.|.+|.+
T Consensus 2323 i~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~l-------treqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~ 2394 (2399)
T KOG0040|consen 2323 ISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQNL-------TREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVN 2394 (2399)
T ss_pred HhcccccccchHHHHHHHHHhhc-CCccccHHHHHhcC-------CHHHHHHHHHHhhhhcccccCCCccccccHHHHHH
Confidence 6432 223345689999999998 78899999887655 455555555544 33 2334588999988
Q ss_pred HHHh
Q 030421 169 MMTR 172 (177)
Q Consensus 169 ~l~~ 172 (177)
.+..
T Consensus 2395 sl~~ 2398 (2399)
T KOG0040|consen 2395 SLFV 2398 (2399)
T ss_pred HHhc
Confidence 7653
No 48
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.08 E-value=1.1e-09 Score=66.92 Aligned_cols=70 Identities=21% Similarity=0.424 Sum_probs=58.4
Q ss_pred cchHHHHHHHHHhhc-CCCCC-cccHHHHHHHHHh-h----CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 030421 31 RSNVQEMRQVFDKFD-TNKDG-KISQDEYNSALSV-L----GKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDM 100 (177)
Q Consensus 31 ~~~~~~l~~~f~~~d-~~~~g-~l~~~e~~~~l~~-l----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 100 (177)
...+..+.++|..+| .+++| +|+..||+.++.. + +...+..++..+++.+|.+++|.|+|+||+.++..+
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 345678889999999 67888 5999999999966 3 334477889999999999999999999999998754
No 49
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.07 E-value=1e-09 Score=66.46 Aligned_cols=69 Identities=23% Similarity=0.451 Sum_probs=60.2
Q ss_pred cchHHHHHHHHHhhcC--CCCCcccHHHHHHHHHh-hCCC----CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 31 RSNVQEMRQVFDKFDT--NKDGKISQDEYNSALSV-LGKG----ISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHD 99 (177)
Q Consensus 31 ~~~~~~l~~~f~~~d~--~~~g~l~~~e~~~~l~~-l~~~----~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 99 (177)
+.+++.++.+|..+|. +++|.|+..+|..+++. +|.. .+..++..++..++.+++|.|+|++|+.++..
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 4567889999999999 89999999999999976 5533 35889999999999999999999999998874
No 50
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.07 E-value=8.6e-10 Score=60.49 Aligned_cols=51 Identities=55% Similarity=0.898 Sum_probs=47.0
Q ss_pred CCCcccHHHHHHHHHhhCCC-CCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 030421 48 KDGKISQDEYNSALSVLGKG-ISKAEMAKSFRFIDTDKDGYIDFKEFIEMMH 98 (177)
Q Consensus 48 ~~g~l~~~e~~~~l~~l~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 98 (177)
.+|.|+.++|..++..+|.. ++.+++..+|..+|.+++|.|+|+||+.++.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 37899999999999888988 9999999999999999999999999999876
No 51
>PF14658 EF-hand_9: EF-hand domain
Probab=99.06 E-value=1e-09 Score=61.41 Aligned_cols=61 Identities=23% Similarity=0.492 Sum_probs=57.4
Q ss_pred HHHHhhccCCCCccCHHHHHHHHHHhCC-CCCHHHHHHHHHhhcCCCC-CcccHHHHHHHHHh
Q 030421 112 GAFQLFDLNGDKKISAEELMEVLRKMGE-KYSLDSCRKMIRGVDADGD-GLIDMDEFMTMMTR 172 (177)
Q Consensus 112 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-g~is~~ef~~~l~~ 172 (177)
.+|..||.++.|.|...++..+|+.++. ...+.+++.+.+.+|+++. |.|+++.|+..|..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4799999999999999999999999988 8899999999999999988 99999999998875
No 52
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.05 E-value=1.7e-09 Score=61.94 Aligned_cols=60 Identities=38% Similarity=0.547 Sum_probs=53.7
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 38 RQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHD 99 (177)
Q Consensus 38 ~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 99 (177)
+.+|..+|.+++|.|+.+++..++..+|. +...+..++..++.+++|.|+|++|+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 46899999999999999999999988764 7888999999999999999999999998764
No 53
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.05 E-value=1.2e-09 Score=66.13 Aligned_cols=68 Identities=13% Similarity=0.355 Sum_probs=58.0
Q ss_pred hHHHHHHHhhccC--CCCccCHHHHHHHHH-HhCCCCC----HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhcc
Q 030421 108 NDIQGAFQLFDLN--GDKKISAEELMEVLR-KMGEKYS----LDSCRKMIRGVDADGDGLIDMDEFMTMMTRNVK 175 (177)
Q Consensus 108 ~~~~~~f~~~D~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~~~ 175 (177)
..+...|..|+.. ++|.|+.+||+.++. .+|..++ +.+++.+++.+|.+++|.|+|++|+.++....+
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~ 82 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGV 82 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 4577889999865 589999999999997 4565565 899999999999999999999999999887543
No 54
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.05 E-value=1.3e-09 Score=68.90 Aligned_cols=63 Identities=25% Similarity=0.345 Sum_probs=54.8
Q ss_pred chhHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 106 KKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172 (177)
Q Consensus 106 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 172 (177)
....+..+|..+|.|++|.|+.+|+..++ + ...+..+..++..+|.|++|.||++||..++..
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l--~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR--L--DPNEHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c--cchHHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 44678999999999999999999999877 2 345678899999999999999999999999843
No 55
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=99.05 E-value=3.1e-09 Score=79.61 Aligned_cols=133 Identities=20% Similarity=0.312 Sum_probs=90.7
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCH---HHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHH
Q 030421 36 EMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISK---AEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQG 112 (177)
Q Consensus 36 ~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~---~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~ 112 (177)
-+..-|.++|+..+|.|+..+|..++-......++ ..++++-+.+..+ ...|+++||..++..+ ...+.+..
T Consensus 319 il~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl----~~l~dfd~ 393 (489)
T KOG2643|consen 319 ILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFL----NNLNDFDI 393 (489)
T ss_pred HHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHH----hhhhHHHH
Confidence 44456777777777788888887776554321111 2345555555444 3358888877776643 22234444
Q ss_pred HHHhhccCCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc
Q 030421 113 AFQLFDLNGDKKISAEELMEVLRKM-GEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRNV 174 (177)
Q Consensus 113 ~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~~ 174 (177)
+...|- ...+.|+..+|+.+.... |..++...++-+|..+|.|+||.+|++||+..|.+..
T Consensus 394 Al~fy~-~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~Rm 455 (489)
T KOG2643|consen 394 ALRFYH-MAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRRM 455 (489)
T ss_pred HHHHHH-HcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHHh
Confidence 555552 334668888888877764 8899988899999999999999999999999998764
No 56
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.01 E-value=2.9e-09 Score=59.58 Aligned_cols=61 Identities=48% Similarity=0.839 Sum_probs=54.6
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 030421 37 MRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMM 97 (177)
Q Consensus 37 l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 97 (177)
+..+|..+|.+++|.|+.+++..++..++...+...+..+|..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5668899999999999999999999999888899999999999999999999999998764
No 57
>PF14658 EF-hand_9: EF-hand domain
Probab=98.96 E-value=4.4e-09 Score=58.89 Aligned_cols=60 Identities=25% Similarity=0.526 Sum_probs=56.8
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHhhCC-CCCHHHHHHHHHhhcCCCC-CcccHHHHHHHHHh
Q 030421 40 VFDKFDTNKDGKISQDEYNSALSVLGK-GISKAEMAKSFRFIDTDKD-GYIDFKEFIEMMHD 99 (177)
Q Consensus 40 ~f~~~d~~~~g~l~~~e~~~~l~~l~~-~~~~~~~~~~~~~~d~~~~-g~i~~~ef~~~~~~ 99 (177)
+|..||.++.|.|...++..+|+..+. .+.+.+++.+...+|+++. |.|++++|+..|..
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 689999999999999999999999998 8999999999999999998 99999999999874
No 58
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.95 E-value=3.3e-08 Score=73.80 Aligned_cols=129 Identities=22% Similarity=0.349 Sum_probs=105.0
Q ss_pred cchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHH
Q 030421 31 RSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDI 110 (177)
Q Consensus 31 ~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~ 110 (177)
....+....+|...|.+.+|.++++||...+.. .+.++.++|...|.+.+|.|..+|....+... ....+.++.
T Consensus 47 ~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~-gi~l~de~~ 120 (463)
T KOG0036|consen 47 KPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELYRIFQSIDLEHDGKIDPNEIWRYLKDL-GIQLSDEKA 120 (463)
T ss_pred CCchHHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHHHHHhhhccccCCccCHHHHHHHHHHh-CCccCHHHH
Confidence 345567788999999999999999999999876 66778999999999999999999999999864 445777889
Q ss_pred HHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh------cCCCCCcccHHHHHHHH
Q 030421 111 QGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGV------DADGDGLIDMDEFMTMM 170 (177)
Q Consensus 111 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~------d~~~~g~is~~ef~~~l 170 (177)
..+|+..|+++++.|+.+|+++.+.-.. ++.+..++..+ |...+..|+ ++|....
T Consensus 121 ~k~~e~~d~~g~~~I~~~e~rd~~ll~p----~s~i~di~~~W~h~~~idigE~~~iP-dg~s~~e 181 (463)
T KOG0036|consen 121 AKFFEHMDKDGKATIDLEEWRDHLLLYP----ESDLEDIYDFWRHVLLIDIGEDAVLP-DGDSKLE 181 (463)
T ss_pred HHHHHHhccCCCeeeccHHHHhhhhcCC----hhHHHHHHHhhhhheEEEccccccCC-cchHHHH
Confidence 9999999999999999999999986543 55566664443 566777777 6665543
No 59
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.91 E-value=1.3e-08 Score=61.51 Aligned_cols=69 Identities=20% Similarity=0.443 Sum_probs=56.7
Q ss_pred chHHHHHHHHHh-hcCCCCC-cccHHHHHHHHHhh-----CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 030421 32 SNVQEMRQVFDK-FDTNKDG-KISQDEYNSALSVL-----GKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDM 100 (177)
Q Consensus 32 ~~~~~l~~~f~~-~d~~~~g-~l~~~e~~~~l~~l-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 100 (177)
..+..+..+|.. +|.+++| +|+.+||+.++... +...+..++..++..+|.+++|.|+|+||+.++..+
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 456788999999 7777765 99999999999774 234567889999999999999999999999987743
No 60
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.83 E-value=1.1e-07 Score=71.44 Aligned_cols=129 Identities=19% Similarity=0.387 Sum_probs=91.8
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhh------CCC----CC-----HHHHH--HHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 37 MRQVFDKFDTNKDGKISQDEYNSALSVL------GKG----IS-----KAEMA--KSFRFIDTDKDGYIDFKEFIEMMHD 99 (177)
Q Consensus 37 l~~~f~~~d~~~~g~l~~~e~~~~l~~l------~~~----~~-----~~~~~--~~~~~~d~~~~g~i~~~ef~~~~~~ 99 (177)
.+-+|.+||.|++|.|+.+||..+.+.+ |.. ++ .-.+. .+..-+..++++++++++|+.++..
T Consensus 235 F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~ 314 (489)
T KOG2643|consen 235 FRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQEN 314 (489)
T ss_pred ceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHHH
Confidence 3447889999999999999998776443 110 00 00111 2334478899999999999999986
Q ss_pred ccccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHhCC-CCCHH--HHHHHHHhhcCCCCCcccHHHHHHHHH
Q 030421 100 MGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGE-KYSLD--SCRKMIRGVDADGDGLIDMDEFMTMMT 171 (177)
Q Consensus 100 ~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~--~~~~~~~~~d~~~~g~is~~ef~~~l~ 171 (177)
+ ..+.++.-|..+|...+|.|+..+|..++-.... +.... ....+-+.+..+ +..||++||.++.+
T Consensus 315 L-----q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~ 383 (489)
T KOG2643|consen 315 L-----QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFR 383 (489)
T ss_pred H-----HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHH
Confidence 4 5577888999999999999999999999987642 22221 234445555433 45699999988764
No 61
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.80 E-value=3.6e-08 Score=68.90 Aligned_cols=139 Identities=22% Similarity=0.343 Sum_probs=95.9
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh-C--CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccc-----
Q 030421 33 NVQEMRQVFDKFDTNKDGKISQDEYNSALSVL-G--KGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNR----- 104 (177)
Q Consensus 33 ~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l-~--~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~----- 104 (177)
..+.+..+|.+.|.+.+|.|+..+++.++..- . +.-...+.+..|+.+|++++|.|+|+||.--+.......
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekeva 178 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVA 178 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHH
Confidence 34678889999999999999999999887552 1 112334566778899999999999999987664221000
Q ss_pred ----------cc--------------------------------------------hhHHHHHHHhhccCCCCccCHHHH
Q 030421 105 ----------VK--------------------------------------------KNDIQGAFQLFDLNGDKKISAEEL 130 (177)
Q Consensus 105 ----------~~--------------------------------------------~~~~~~~f~~~D~~~~g~i~~~e~ 130 (177)
.+ ..-+..+...+|++++.+++..||
T Consensus 179 dairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeF 258 (362)
T KOG4251|consen 179 DAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEF 258 (362)
T ss_pred HHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhh
Confidence 00 011566677788888888988888
Q ss_pred HHHHHH-----hCCCCC----HHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 030421 131 MEVLRK-----MGEKYS----LDSCRKMIRGVDADGDGLIDMDEFMTMMT 171 (177)
Q Consensus 131 ~~~l~~-----~~~~~~----~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 171 (177)
....-. .|..+. ++...++-..+|.|++|.++++++..++-
T Consensus 259 islpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~d 308 (362)
T KOG4251|consen 259 ISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVD 308 (362)
T ss_pred hcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcC
Confidence 665421 133332 33345556667889999999988877753
No 62
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.80 E-value=7e-08 Score=65.37 Aligned_cols=113 Identities=18% Similarity=0.362 Sum_probs=89.8
Q ss_pred CCCCcCCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcccc
Q 030421 24 PSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDN 103 (177)
Q Consensus 24 ~~~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 103 (177)
...+.++..+|+.+...|..+|.+.||+|+..|++.++..||-+.+.--++.++..+|.|.+|.|+|.+|+-++......
T Consensus 88 teF~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaag 167 (244)
T KOG0041|consen 88 TEFSEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAG 167 (244)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhcc
Confidence 34556778889999999999999999999999999999999999888889999999999999999999999998765443
Q ss_pred ccchhH-HHHHH--HhhccCCCCccCHHHHHHHHHH
Q 030421 104 RVKKND-IQGAF--QLFDLNGDKKISAEELMEVLRK 136 (177)
Q Consensus 104 ~~~~~~-~~~~f--~~~D~~~~g~i~~~e~~~~l~~ 136 (177)
....+. +..+- ...|..+-|......|-.+=-.
T Consensus 168 EL~~ds~~~~LAr~~eVDVskeGV~GAknFFeAKI~ 203 (244)
T KOG0041|consen 168 ELQEDSGLLRLARLSEVDVSKEGVSGAKNFFEAKIE 203 (244)
T ss_pred ccccchHHHHHHHhcccchhhhhhhhHHHHHHHHHH
Confidence 333322 22222 3478888888877766554433
No 63
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.78 E-value=5.2e-08 Score=61.69 Aligned_cols=59 Identities=22% Similarity=0.293 Sum_probs=30.8
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHHHHHHHH
Q 030421 71 AEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVL 134 (177)
Q Consensus 71 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 134 (177)
..+...|..+|.+++|.|+.+|+..+.. ...+..+...|..+|.|++|.||.+||..++
T Consensus 48 ~~l~w~F~~lD~d~DG~Ls~~EL~~~~l-----~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 48 DPVGWMFNQLDGNYDGKLSHHELAPIRL-----DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHHc-----cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 3445555555555555555555554431 1123345555555555555555555555555
No 64
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.76 E-value=8.8e-08 Score=59.43 Aligned_cols=71 Identities=34% Similarity=0.579 Sum_probs=60.4
Q ss_pred CCcCCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 26 VPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHD 99 (177)
Q Consensus 26 ~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 99 (177)
++.+++.+...+..+|..++. ++|.|+..+...++... .++.+.+..||...|.+.+|.++++||+.++..
T Consensus 1 ~~~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S--~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 1 MPKLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKS--GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp ----SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT--TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc--CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 467889999999999999986 68999999999998875 468899999999999999999999999998874
No 65
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.75 E-value=5.8e-08 Score=58.70 Aligned_cols=68 Identities=19% Similarity=0.455 Sum_probs=56.7
Q ss_pred chHHHHHHHHHhhcCC--CCCcccHHHHHHHHH-hhCCCCC----HHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 32 SNVQEMRQVFDKFDTN--KDGKISQDEYNSALS-VLGKGIS----KAEMAKSFRFIDTDKDGYIDFKEFIEMMHD 99 (177)
Q Consensus 32 ~~~~~l~~~f~~~d~~--~~g~l~~~e~~~~l~-~l~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 99 (177)
..+..+...|..++.. .+|.|+.+||..++. .++..++ ..++..+|..+|.+++|.|+|++|+.++..
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 3467888899999876 478999999999996 4555555 888999999999999999999999998774
No 66
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.71 E-value=2.3e-07 Score=55.70 Aligned_cols=65 Identities=14% Similarity=0.338 Sum_probs=53.2
Q ss_pred hHHHHHHHhhccCCCCccCHHHHHHHHHHh-----CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 030421 108 NDIQGAFQLFDLNGDKKISAEELMEVLRKM-----GEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRN 173 (177)
Q Consensus 108 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~ 173 (177)
..+-.+|..|. .+.+.++..||+.++..- +..-++..++.+++..|.|+||.|+|+||+.++...
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 35667888887 456799999999999753 334568889999999999999999999999988654
No 67
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.67 E-value=3.4e-08 Score=46.60 Aligned_cols=27 Identities=44% Similarity=0.749 Sum_probs=16.8
Q ss_pred HHHHHHhhccCCCCccCHHHHHHHHHH
Q 030421 110 IQGAFQLFDLNGDKKISAEELMEVLRK 136 (177)
Q Consensus 110 ~~~~f~~~D~~~~g~i~~~e~~~~l~~ 136 (177)
++.+|+.+|.|++|.|+.+||+.+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 455666666666666666666666654
No 68
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.65 E-value=2.7e-07 Score=59.49 Aligned_cols=99 Identities=19% Similarity=0.415 Sum_probs=80.0
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhhCC-CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHH----HHH
Q 030421 39 QVFDKFDTNKDGKISQDEYNSALSVLGK-GISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDI----QGA 113 (177)
Q Consensus 39 ~~f~~~d~~~~g~l~~~e~~~~l~~l~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~----~~~ 113 (177)
++...|..+|.|.+++++|..++..+.- .+..-.+...|+.+|-++++.|.-.++...+..+.....+.++. .++
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekv 154 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKV 154 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 4556677899999999999999887753 33444566678889999999999999999988887777776654 555
Q ss_pred HHhhccCCCCccCHHHHHHHHHHh
Q 030421 114 FQLFDLNGDKKISAEELMEVLRKM 137 (177)
Q Consensus 114 f~~~D~~~~g~i~~~e~~~~l~~~ 137 (177)
.+..|.|++|.|+..||.+++...
T Consensus 155 ieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 155 IEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHhcCCCCCcccHHHHHHHHHhC
Confidence 677899999999999999998654
No 69
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.64 E-value=2.8e-07 Score=59.94 Aligned_cols=98 Identities=17% Similarity=0.376 Sum_probs=61.9
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHh-CCCCCHHHHHHH
Q 030421 71 AEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM-GEKYSLDSCRKM 149 (177)
Q Consensus 71 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~ 149 (177)
+++++.|..+|.+.+|.|.-+++...+..+... ..++.+..++... .|.|+..-|..++.+. ..--+++.+...
T Consensus 32 qEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~-~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtdpe~~I~~A 106 (171)
T KOG0031|consen 32 QEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKI-ASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTDPEEVILNA 106 (171)
T ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 556666777777777777777777777654444 4555666555543 4667776666666543 112234556777
Q ss_pred HHhhcCCCCCcccHHHHHHHHHhh
Q 030421 150 IRGVDADGDGLIDMDEFMTMMTRN 173 (177)
Q Consensus 150 ~~~~d~~~~g~is~~ef~~~l~~~ 173 (177)
|+.+|.++.|.|.-+.+..+|...
T Consensus 107 F~~FD~~~~G~I~~d~lre~Ltt~ 130 (171)
T KOG0031|consen 107 FKTFDDEGSGKIDEDYLRELLTTM 130 (171)
T ss_pred HHhcCccCCCccCHHHHHHHHHHh
Confidence 777777777777777777776653
No 70
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.63 E-value=2.5e-07 Score=62.79 Aligned_cols=66 Identities=27% Similarity=0.468 Sum_probs=58.6
Q ss_pred hHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 030421 108 NDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRN 173 (177)
Q Consensus 108 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~ 173 (177)
.....+|+.||.+.||+|+..|++-++..+|.+.+---+..+++++|.|.+|+|||-+|+=.+...
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 467788999999999999999999999999988887778899999999999999999998776653
No 71
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.55 E-value=1.3e-07 Score=68.70 Aligned_cols=104 Identities=18% Similarity=0.260 Sum_probs=87.9
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHh-CCCCCHHHHHHH
Q 030421 71 AEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM-GEKYSLDSCRKM 149 (177)
Q Consensus 71 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~ 149 (177)
+.+..+|..||.+++|.++|.+.+..+..+..-......++.+|+.|+.+.||.++..+|--+|+.. | ...-.+--+
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg--v~~l~v~~l 336 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG--VEVLRVPVL 336 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC--cceeecccc
Confidence 5678899999999999999999998888666666677899999999999999999999999988865 4 223345668
Q ss_pred HHhhcCCCCCcccHHHHHHHHHhhccc
Q 030421 150 IRGVDADGDGLIDMDEFMTMMTRNVKV 176 (177)
Q Consensus 150 ~~~~d~~~~g~is~~ef~~~l~~~~~~ 176 (177)
|..++...+|+|++.+|.++.......
T Consensus 337 f~~i~q~d~~ki~~~~f~~fa~~~p~~ 363 (412)
T KOG4666|consen 337 FPSIEQKDDPKIYASNFRKFAATEPNL 363 (412)
T ss_pred chhhhcccCcceeHHHHHHHHHhCchh
Confidence 999999999999999999998776554
No 72
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.50 E-value=3.9e-06 Score=67.42 Aligned_cols=141 Identities=20% Similarity=0.383 Sum_probs=117.7
Q ss_pred cCCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccch
Q 030421 28 RASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKK 107 (177)
Q Consensus 28 ~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 107 (177)
.+.......+..+|...|.+++|.+++.+...++..++..+....+..+|+..+..+++.+.+.+|..+.......
T Consensus 129 ~~~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r---- 204 (746)
T KOG0169|consen 129 RQRSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR---- 204 (746)
T ss_pred hhcchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC----
Confidence 3344455688889999999999999999999999999999999999999999988889999999999998754322
Q ss_pred hHHHHHHHhhccCCCCccCHHHHHHHHHHhC--CCCCHHHHHHHHHhhcCC----CCCcccHHHHHHHHHhh
Q 030421 108 NDIQGAFQLFDLNGDKKISAEELMEVLRKMG--EKYSLDSCRKMIRGVDAD----GDGLIDMDEFMTMMTRN 173 (177)
Q Consensus 108 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~----~~g~is~~ef~~~l~~~ 173 (177)
..+..+|..+-.+ .+.++.+++..+|...+ ...+.+.++++++.+... ..+.++++.|..+|.+.
T Consensus 205 pev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~ 275 (746)
T KOG0169|consen 205 PEVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSP 275 (746)
T ss_pred chHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCc
Confidence 2788888888655 89999999999999874 377888999999888554 44569999999998763
No 73
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.49 E-value=1.9e-07 Score=44.85 Aligned_cols=30 Identities=43% Similarity=0.762 Sum_probs=24.5
Q ss_pred HHHHHHHhhccCCCCccCHHHHHHHHH-HhC
Q 030421 109 DIQGAFQLFDLNGDKKISAEELMEVLR-KMG 138 (177)
Q Consensus 109 ~~~~~f~~~D~~~~g~i~~~e~~~~l~-~~~ 138 (177)
+++.+|+.+|.+++|.|+.+||+.+|+ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 367889999999999999999999988 565
No 74
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.49 E-value=2.6e-07 Score=43.54 Aligned_cols=28 Identities=43% Similarity=0.776 Sum_probs=25.7
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 145 SCRKMIRGVDADGDGLIDMDEFMTMMTR 172 (177)
Q Consensus 145 ~~~~~~~~~d~~~~g~is~~ef~~~l~~ 172 (177)
+++.+|+.+|.|++|.|+++||...+.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 5788999999999999999999999875
No 75
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.46 E-value=2.6e-06 Score=51.18 Aligned_cols=67 Identities=16% Similarity=0.396 Sum_probs=52.8
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHh-h----CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 030421 33 NVQEMRQVFDKFDTNKDGKISQDEYNSALSV-L----GKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDM 100 (177)
Q Consensus 33 ~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~-l----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 100 (177)
.+..+..+|.++.. +.+.++..||+.++.. + ...-++..+..++..+|.+++|.|+|.||+.++..+
T Consensus 6 ai~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 6 SMEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 45677888888874 4568999999998854 3 334467788999999999999999999999988753
No 76
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.40 E-value=1.5e-06 Score=55.59 Aligned_cols=68 Identities=29% Similarity=0.473 Sum_probs=54.5
Q ss_pred hHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCC--CCCcccHHHHHHHHHhhcc
Q 030421 108 NDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDAD--GDGLIDMDEFMTMMTRNVK 175 (177)
Q Consensus 108 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~--~~g~is~~ef~~~l~~~~~ 175 (177)
.+++.+|..||..++|.|+..+.-.+|+.+|.+.+..++.+.+.....+ +-..|+|++|+-++....|
T Consensus 11 ~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vak 80 (152)
T KOG0030|consen 11 EEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAK 80 (152)
T ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHh
Confidence 5788888888888888888888888888888888888888888877666 4456888888887766443
No 77
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.38 E-value=1.7e-06 Score=65.90 Aligned_cols=59 Identities=27% Similarity=0.446 Sum_probs=50.5
Q ss_pred chhHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhcccC
Q 030421 106 KKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRNVKVA 177 (177)
Q Consensus 106 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~~~~~ 177 (177)
....++.+|+.+|.+++|.|+.+||.. ++.+|..+|.|++|.|+++||...+..-.++|
T Consensus 332 ~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~~~ 390 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAALRLA 390 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHHHHhc
Confidence 345688999999999999999999942 57789999999999999999999987765543
No 78
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.33 E-value=4.6e-06 Score=51.76 Aligned_cols=62 Identities=32% Similarity=0.441 Sum_probs=51.9
Q ss_pred hhHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 030421 107 KNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMT 171 (177)
Q Consensus 107 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 171 (177)
......+|...|. ++|.|+.++.+.++...+ ++.+.+..+|...|.+++|.++++||.-.|+
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 3567788888885 679999999999998877 7789999999999999999999999987654
No 79
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.29 E-value=1.4e-06 Score=41.77 Aligned_cols=30 Identities=37% Similarity=0.655 Sum_probs=24.6
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHH-hhC
Q 030421 36 EMRQVFDKFDTNKDGKISQDEYNSALS-VLG 65 (177)
Q Consensus 36 ~l~~~f~~~d~~~~g~l~~~e~~~~l~-~l~ 65 (177)
+++.+|..+|.+++|+|+.+||..++. .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 467889999999999999999999988 564
No 80
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.25 E-value=6.1e-06 Score=43.71 Aligned_cols=48 Identities=21% Similarity=0.387 Sum_probs=35.1
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 125 ISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172 (177)
Q Consensus 125 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 172 (177)
++..|++.+|+.+...+++..+..+|+.+|.+++|.+..+||..++..
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 567788888888888888888888888888888888888888877754
No 81
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.23 E-value=7.6e-06 Score=43.35 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=35.2
Q ss_pred ccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 52 ISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHD 99 (177)
Q Consensus 52 l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 99 (177)
+++.|++.+|+.++..++...+..+|..+|..++|.+.-+||..++..
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 677888888888888888888888888888888888888888887763
No 82
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.21 E-value=1.7e-06 Score=39.27 Aligned_cols=23 Identities=52% Similarity=0.759 Sum_probs=14.5
Q ss_pred HHHHHhhccCCCCccCHHHHHHH
Q 030421 111 QGAFQLFDLNGDKKISAEELMEV 133 (177)
Q Consensus 111 ~~~f~~~D~~~~g~i~~~e~~~~ 133 (177)
+.+|+.+|.|++|.|+.+||..+
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45666666666666666666654
No 83
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.20 E-value=7.4e-06 Score=62.95 Aligned_cols=125 Identities=18% Similarity=0.227 Sum_probs=80.7
Q ss_pred HHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccc----------------
Q 030421 41 FDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNR---------------- 104 (177)
Q Consensus 41 f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~---------------- 104 (177)
-...|..+||.|+++||+.+=..++ .+.......|..+|+.++|.+++++|.+.+.......
T Consensus 80 a~iaD~tKDglisf~eF~afe~~lC--~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg 157 (694)
T KOG0751|consen 80 ASIADQTKDGLISFQEFRAFESVLC--APDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFG 157 (694)
T ss_pred HhhhhhcccccccHHHHHHHHhhcc--CchHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhh
Confidence 3344566777888888876544433 2345566777788888888888888887775432111
Q ss_pred ------------------cchhHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCC-CCCcccHHH
Q 030421 105 ------------------VKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDAD-GDGLIDMDE 165 (177)
Q Consensus 105 ------------------~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-~~g~is~~e 165 (177)
...+....+|+..|+.++|.|+.-+|.+++-....++....++..+-..-.. ...++|+..
T Consensus 158 ~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~y 237 (694)
T KOG0751|consen 158 DIRKRHLNYAEFTQFLHEFQLEHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSY 237 (694)
T ss_pred hHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHH
Confidence 1123366778888888999999888888888776666666666666555333 333566555
Q ss_pred HH
Q 030421 166 FM 167 (177)
Q Consensus 166 f~ 167 (177)
|.
T Consensus 238 f~ 239 (694)
T KOG0751|consen 238 FN 239 (694)
T ss_pred HH
Confidence 43
No 84
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.17 E-value=1.3e-05 Score=61.29 Aligned_cols=60 Identities=32% Similarity=0.460 Sum_probs=53.0
Q ss_pred hCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHh
Q 030421 64 LGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM 137 (177)
Q Consensus 64 l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 137 (177)
.|+......+..+|+.+|.+++|.|+.+||+. ...+|..+|.|++|.|+.+||..++...
T Consensus 327 ~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 327 EGGEAFTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hccChhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 35677788899999999999999999999952 4678999999999999999999998754
No 85
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.10 E-value=1.3e-05 Score=68.73 Aligned_cols=67 Identities=18% Similarity=0.418 Sum_probs=59.5
Q ss_pred hHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCC--CH-----HHHHHHHHhhcCCCCCcccHHHHHHHHHhhc
Q 030421 108 NDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKY--SL-----DSCRKMIRGVDADGDGLIDMDEFMTMMTRNV 174 (177)
Q Consensus 108 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~--~~-----~~~~~~~~~~d~~~~g~is~~ef~~~l~~~~ 174 (177)
.+...+|+.||.+++|.+++.+|+.+|+.+|..+ .+ .++.+++..+|++-+|+|+.++|+.+|.++.
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~E 2326 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKE 2326 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcc
Confidence 3578899999999999999999999999999766 23 3789999999999999999999999998753
No 86
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.09 E-value=5.5e-05 Score=57.77 Aligned_cols=132 Identities=20% Similarity=0.352 Sum_probs=99.0
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHH--HHhh------------CCCCCHHHHHHH---HHhhcCCCCCcccHHHHHHHHH
Q 030421 36 EMRQVFDKFDTNKDGKISQDEYNSA--LSVL------------GKGISKAEMAKS---FRFIDTDKDGYIDFKEFIEMMH 98 (177)
Q Consensus 36 ~l~~~f~~~d~~~~g~l~~~e~~~~--l~~l------------~~~~~~~~~~~~---~~~~d~~~~g~i~~~ef~~~~~ 98 (177)
.++++|--+++...|+|+..++... +..+ ..-.+.+....+ |..+|.+.+|.|+-++....-.
T Consensus 226 vi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d 305 (493)
T KOG2562|consen 226 VIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD 305 (493)
T ss_pred HhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhc
Confidence 5677888899999999999998532 2222 111223334444 6667999999999998888755
Q ss_pred hccccccchhHHHHHHH----hhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 030421 99 DMGDNRVKKNDIQGAFQ----LFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMT 171 (177)
Q Consensus 99 ~~~~~~~~~~~~~~~f~----~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 171 (177)
.. ...-.+.++|. .+-...+|.|+.++|..++-++-..-++.-++..|+-+|-+++|.|+..|...++.
T Consensus 306 ~t----lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fye 378 (493)
T KOG2562|consen 306 HT----LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYE 378 (493)
T ss_pred cc----hhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHH
Confidence 43 23456788888 44567889999999999999887667778889999999999999999887766554
No 87
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.08 E-value=3.9e-05 Score=59.13 Aligned_cols=111 Identities=18% Similarity=0.350 Sum_probs=84.2
Q ss_pred CCCCcCCcchHHHHHHHHHhhcCCCCCcccHHHHHHHH-HhhCCCCCHHHHHHHH-HhhcCCCCCcccHHHHHHHHHhcc
Q 030421 24 PSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSAL-SVLGKGISKAEMAKSF-RFIDTDKDGYIDFKEFIEMMHDMG 101 (177)
Q Consensus 24 ~~~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l-~~l~~~~~~~~~~~~~-~~~d~~~~g~i~~~ef~~~~~~~~ 101 (177)
...++..+.+++.+..-|...+.++..+++.++|.... ..++......++.++. ...|...+|-|+|+||..+-..+
T Consensus 25 ~~lkra~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~l- 103 (694)
T KOG0751|consen 25 ELLKRADPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVL- 103 (694)
T ss_pred HhhccCChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhc-
Confidence 34556667888888888999999999999999997654 4444443444444444 55677789999999999885532
Q ss_pred ccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHh
Q 030421 102 DNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM 137 (177)
Q Consensus 102 ~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 137 (177)
. ..+.....+|..||..++|.++.+++.+++...
T Consensus 104 C--~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 104 C--APDALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred c--CchHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 1 234567889999999999999999999999764
No 88
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.04 E-value=4e-05 Score=60.30 Aligned_cols=141 Identities=14% Similarity=0.222 Sum_probs=97.0
Q ss_pred CcCCcchHHHHHHHHHhhcCCCCCcccHHHHHHHH-HhhCCCCCHHHHHHHHHhhcCC---C--CCcccHHHHHHHHHhc
Q 030421 27 PRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSAL-SVLGKGISKAEMAKSFRFIDTD---K--DGYIDFKEFIEMMHDM 100 (177)
Q Consensus 27 ~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l-~~l~~~~~~~~~~~~~~~~d~~---~--~g~i~~~ef~~~~~~~ 100 (177)
..+.+..++.|.++|...|.+++|.++-.|+...= ..++.++...++..+....... + ++.++...|+-+...+
T Consensus 187 qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lf 266 (625)
T KOG1707|consen 187 QELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLF 266 (625)
T ss_pred ccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHH
Confidence 34566778899999999999999999999998764 4477788877776665544322 2 3456666666654311
Q ss_pred cc-----------------------------------------cccchhHHHHHHHhhccCCCCccCHHHHHHHHHHhCC
Q 030421 101 GD-----------------------------------------NRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGE 139 (177)
Q Consensus 101 ~~-----------------------------------------~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 139 (177)
.. .+.-.+.+..+|..||.|+||.++..||..++...+.
T Consensus 267 iergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~ 346 (625)
T KOG1707|consen 267 IERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPG 346 (625)
T ss_pred HHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCC
Confidence 10 0111234888999999999999999999999999854
Q ss_pred CCCH--HHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 030421 140 KYSL--DSCRKMIRGVDADGDGLIDMDEFMTMMT 171 (177)
Q Consensus 140 ~~~~--~~~~~~~~~~d~~~~g~is~~ef~~~l~ 171 (177)
..+. -..+. ...+..|.++|+.|+..+.
T Consensus 347 ~pW~~~~~~~~----t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 347 SPWTSSPYKDS----TVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred CCCCCCccccc----ceecccceeehhhHHHHHH
Confidence 3311 11111 1134779999999988653
No 89
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.01 E-value=3.2e-05 Score=58.80 Aligned_cols=108 Identities=25% Similarity=0.379 Sum_probs=72.8
Q ss_pred CCCcCCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc---c
Q 030421 25 SVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDM---G 101 (177)
Q Consensus 25 ~~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~---~ 101 (177)
.+...+....-...+.+..++.+. +..+-=..++..+ ......+..+|+.+|.|.+|.|+.+||...+..+ +
T Consensus 506 kla~~s~d~~v~Y~~~~~~l~~e~---~~~ea~~slvetL--Yr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~ 580 (631)
T KOG0377|consen 506 KLANGSDDGKVEYKSTLDNLDTEV---ILEEAGSSLVETL--YRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHM 580 (631)
T ss_pred hccCCCcCcceehHhHHHHhhhhh---HHHHHHhHHHHHH--HhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhc
Confidence 334444444445556666665442 1111112223332 2355678899999999999999999999887543 3
Q ss_pred ccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHh
Q 030421 102 DNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM 137 (177)
Q Consensus 102 ~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 137 (177)
......+.+..+-+.+|.++||.|+..||..++.-.
T Consensus 581 ~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 581 NGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred CCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 456677888899999999999999999998888654
No 90
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.00013 Score=59.13 Aligned_cols=140 Identities=22% Similarity=0.312 Sum_probs=109.7
Q ss_pred CcCCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccc----
Q 030421 27 PRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGD---- 102 (177)
Q Consensus 27 ~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~---- 102 (177)
..++..+...-...|..+.+ +.|+|+..+-+.++...| ++...+..||...|.|.||.++..||...|..+..
T Consensus 8 WavT~~Er~K~~~qF~~Lkp-~~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG 84 (1118)
T KOG1029|consen 8 WAVTDEERQKHDAQFGQLKP-GQGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQG 84 (1118)
T ss_pred cccchHHHHHHHHHHhccCC-CCCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcC
Confidence 44555665556666666644 689999999999887765 45678899999999999999999999988752100
Q ss_pred ----------------------------------------------------------------------c--------c
Q 030421 103 ----------------------------------------------------------------------N--------R 104 (177)
Q Consensus 103 ----------------------------------------------------------------------~--------~ 104 (177)
. .
T Consensus 85 ~~lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~sp 164 (1118)
T KOG1029|consen 85 IQLPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSP 164 (1118)
T ss_pred CcCCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCC
Confidence 0 0
Q ss_pred ----c-----------------------chhHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCC
Q 030421 105 ----V-----------------------KKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADG 157 (177)
Q Consensus 105 ----~-----------------------~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 157 (177)
. ..-+.+.+|..+|+...|+++-..-+.+|...+ ++.-.+..|+...|.|+
T Consensus 165 l~~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~ 242 (1118)
T KOG1029|consen 165 LPHDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDG 242 (1118)
T ss_pred CCCCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCC
Confidence 0 001267889999999999999999999998776 67778999999999999
Q ss_pred CCcccHHHHHHHHH
Q 030421 158 DGLIDMDEFMTMMT 171 (177)
Q Consensus 158 ~g~is~~ef~~~l~ 171 (177)
||+++-+||+-.+.
T Consensus 243 DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 243 DGKLSADEFILAMH 256 (1118)
T ss_pred CCcccHHHHHHHHH
Confidence 99999999986654
No 91
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.99 E-value=3.2e-05 Score=59.89 Aligned_cols=77 Identities=18% Similarity=0.399 Sum_probs=67.6
Q ss_pred CCCCCcCCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCC---CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 23 NPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKG---ISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHD 99 (177)
Q Consensus 23 ~~~~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~---~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 99 (177)
....++++..++..+.+.|...| +++|+|+..++..++...+.. ..+++++.++...+.+.+|.|+|++|+.++..
T Consensus 7 ~~~~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 7 PWLQSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred hhhcccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 45677889999999999999999 999999999999999887643 45788999999999999999999999997754
Q ss_pred c
Q 030421 100 M 100 (177)
Q Consensus 100 ~ 100 (177)
+
T Consensus 86 l 86 (627)
T KOG0046|consen 86 L 86 (627)
T ss_pred h
Confidence 3
No 92
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.99 E-value=2.7e-06 Score=53.77 Aligned_cols=63 Identities=25% Similarity=0.329 Sum_probs=46.4
Q ss_pred cchhHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 030421 105 VKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTM 169 (177)
Q Consensus 105 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~ 169 (177)
.....+.-.|..+|.|++|.|+..|++.+...+ ...+.-+..+++..|.|+||.||+.||..+
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 344578888999999999999999998887655 344556888999999999999999999763
No 93
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.93 E-value=1.8e-05 Score=35.85 Aligned_cols=25 Identities=32% Similarity=0.680 Sum_probs=22.1
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHH
Q 030421 146 CRKMIRGVDADGDGLIDMDEFMTMM 170 (177)
Q Consensus 146 ~~~~~~~~d~~~~g~is~~ef~~~l 170 (177)
++.+|+.+|.|++|.||++||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4578999999999999999998864
No 94
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.88 E-value=5.8e-05 Score=44.98 Aligned_cols=66 Identities=17% Similarity=0.403 Sum_probs=53.1
Q ss_pred HHHHHHHhhccCCCCccCHHHHHHHHHHhCC--CCCHHHHHHHHHhhcCC----CCCcccHHHHHHHHHhhcc
Q 030421 109 DIQGAFQLFDLNGDKKISAEELMEVLRKMGE--KYSLDSCRKMIRGVDAD----GDGLIDMDEFMTMMTRNVK 175 (177)
Q Consensus 109 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~g~is~~ef~~~l~~~~~ 175 (177)
++..+|..|.. +.+.||.++|+.+|..... ..+.+.+..++..+.++ ..+.+++++|..+|.+..+
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~N 72 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDEN 72 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTTC
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCcC
Confidence 36788888855 7889999999999987643 46889999999998665 4788999999999987543
No 95
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.00027 Score=43.92 Aligned_cols=64 Identities=27% Similarity=0.459 Sum_probs=46.2
Q ss_pred chhHHHHH-HHhhccCCCCccCHHHHHHHHHHh------CC----CCCHHHHHHHH----HhhcCCCCCcccHHHHHHH
Q 030421 106 KKNDIQGA-FQLFDLNGDKKISAEELMEVLRKM------GE----KYSLDSCRKMI----RGVDADGDGLIDMDEFMTM 169 (177)
Q Consensus 106 ~~~~~~~~-f~~~D~~~~g~i~~~e~~~~l~~~------~~----~~~~~~~~~~~----~~~d~~~~g~is~~ef~~~ 169 (177)
..+.++.. |.+.|.|++|.|+--|+..++... |. -.++.++..++ +.-|.|+||.|+|-||++.
T Consensus 64 tpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 64 TPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred CHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 34455544 688899999999999998888653 22 23455555554 4448899999999999875
No 96
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.44 E-value=0.00058 Score=53.22 Aligned_cols=63 Identities=17% Similarity=0.430 Sum_probs=54.4
Q ss_pred HHHHHHHhhccCCCCccCHHHHHHHHHHhCC---CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 109 DIQGAFQLFDLNGDKKISAEELMEVLRKMGE---KYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172 (177)
Q Consensus 109 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 172 (177)
.++..|...| +++|+|+..|+..++...+. ....+++++++...++|.+|.|+|++|+..+..
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 5778899999 99999999999999988754 446889999999999999999999999986554
No 97
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.42 E-value=9.3e-05 Score=46.79 Aligned_cols=63 Identities=25% Similarity=0.299 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHHHHHH
Q 030421 67 GISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELME 132 (177)
Q Consensus 67 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 132 (177)
..-...+.-.|..+|.+.+|.|+..|+..+...+ ...+..++..|+..|.|++|.|+..|+..
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l---~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL---MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT---STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH---hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3445567777788888888888888777765533 23345677788888888888888888754
No 98
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.35 E-value=0.00076 Score=49.60 Aligned_cols=102 Identities=17% Similarity=0.184 Sum_probs=84.1
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhhC-CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHHH
Q 030421 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLG-KGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGA 113 (177)
Q Consensus 35 ~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~ 113 (177)
..++..|..||.+++|.+++.+-...+.-+. ...+...++.-|++|+...+|.++-.+|..+++.... ...-.+..+
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg--v~~l~v~~l 336 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG--VEVLRVPVL 336 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC--cceeecccc
Confidence 5788899999999999999888877776665 4567788899999999999999999888888774322 223356788
Q ss_pred HHhhccCCCCccCHHHHHHHHHHhC
Q 030421 114 FQLFDLNGDKKISAEELMEVLRKMG 138 (177)
Q Consensus 114 f~~~D~~~~g~i~~~e~~~~l~~~~ 138 (177)
|...+...+|.|+..+|+.+....+
T Consensus 337 f~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 337 FPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred chhhhcccCcceeHHHHHHHHHhCc
Confidence 9999999999999999999987654
No 99
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.33 E-value=0.00034 Score=31.87 Aligned_cols=25 Identities=48% Similarity=0.826 Sum_probs=13.8
Q ss_pred HHHHHhhccCCCCccCHHHHHHHHH
Q 030421 111 QGAFQLFDLNGDKKISAEELMEVLR 135 (177)
Q Consensus 111 ~~~f~~~D~~~~g~i~~~e~~~~l~ 135 (177)
+.+|+.+|.+++|.|+..||..++.
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 4455555555555555555555554
No 100
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.28 E-value=0.0002 Score=50.51 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=32.8
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcccc--ccchhHHHHHHHhhccCCCCccCHHHHHHHHHHh
Q 030421 72 EMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDN--RVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM 137 (177)
Q Consensus 72 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~--~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 137 (177)
.+..+|...|.+.++.|+-.|..+.+..-... ....+.-+..|+..|++++|.|+.+|++--+...
T Consensus 102 klmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlas 169 (362)
T KOG4251|consen 102 KLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLAS 169 (362)
T ss_pred HHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhh
Confidence 34555555566666666666555554321110 0111233444556666666666666665444443
No 101
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.26 E-value=0.012 Score=39.69 Aligned_cols=135 Identities=17% Similarity=0.218 Sum_probs=86.1
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcC---CCCCcccHHHHHHHHHhcc---------
Q 030421 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDT---DKDGYIDFKEFIEMMHDMG--------- 101 (177)
Q Consensus 34 ~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~---~~~g~i~~~ef~~~~~~~~--------- 101 (177)
...|++-...+|+|+||.|..-|-..-++.+|+.+-...+..++-.... ...+.+.-.-|...+..+.
T Consensus 6 ~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg 85 (174)
T PF05042_consen 6 MTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSG 85 (174)
T ss_pred ccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcc
Confidence 3456777888999999999999999999999987655544433322111 1112111111111111110
Q ss_pred ----ccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHhCC-------CCCHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 030421 102 ----DNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGE-------KYSLDSCRKMIRGVDADGDGLIDMDEFMTM 169 (177)
Q Consensus 102 ----~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~-------~~~~~~~~~~~~~~d~~~~g~is~~ef~~~ 169 (177)
...-...+.+.+|..++..+.+.+|..|+..+++.... -.+.-|...++... .+.+|.++.++....
T Consensus 86 ~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~v 163 (174)
T PF05042_consen 86 AYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGV 163 (174)
T ss_pred ccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhh
Confidence 11223568999999999988899999999999987422 12244555555554 678899988876554
No 102
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.0011 Score=55.81 Aligned_cols=145 Identities=23% Similarity=0.352 Sum_probs=116.4
Q ss_pred CCCCCcCCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcc-
Q 030421 23 NPSVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMG- 101 (177)
Q Consensus 23 ~~~~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~- 101 (177)
...++.++..+...+..+|..+.+. .|.++....+.++..- .++...+.++|...|.+.+|.+++.+|...+....
T Consensus 117 ~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s--~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~ 193 (847)
T KOG0998|consen 117 APFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNS--KLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLIND 193 (847)
T ss_pred cccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcC--CCChhhhccccccccccccCCCChhhhhhhhhHHHH
Confidence 4566677888888899999999775 8899998888887653 56777888999999999999999999988864211
Q ss_pred --c-----------------------------------------------------------------------------
Q 030421 102 --D----------------------------------------------------------------------------- 102 (177)
Q Consensus 102 --~----------------------------------------------------------------------------- 102 (177)
.
T Consensus 194 ~l~~~~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~ 273 (847)
T KOG0998|consen 194 LLNGNSEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSW 273 (847)
T ss_pred HhhcccCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCcccccccccccccccccc
Confidence 0
Q ss_pred ----cccchhHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 103 ----NRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172 (177)
Q Consensus 103 ----~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 172 (177)
..........+|...|.+++|.|+-.+++..+...| ++...+..++...+..+.|.+++++|.-.+..
T Consensus 274 ~~~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 274 SPKVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred CcccChHHHHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchhhhh
Confidence 000112356679999999999999999999998855 78889999999999999999999988766543
No 103
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.02 E-value=0.009 Score=49.90 Aligned_cols=107 Identities=19% Similarity=0.166 Sum_probs=81.7
Q ss_pred CCCcCCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCH-----HHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 25 SVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISK-----AEMAKSFRFIDTDKDGYIDFKEFIEMMHD 99 (177)
Q Consensus 25 ~~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~-----~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 99 (177)
.....+.....+++..|..++....|.++.+++..++-.+|...-. .++..++...+....|.+++.+|...+..
T Consensus 737 ~sk~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 737 DSKGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred cccchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 3445556778899999999999999999999999999999976653 23444555556666789999999999986
Q ss_pred ccccccchhHHHHHHHhhccCCCCccCHHHHHH
Q 030421 100 MGDNRVKKNDIQGAFQLFDLNGDKKISAEELME 132 (177)
Q Consensus 100 ~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 132 (177)
-........++...|+.+-+++. +|..+|+..
T Consensus 817 ~~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 817 EYEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hhhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 55544555667777887766655 788888877
No 104
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.02 E-value=0.0011 Score=30.06 Aligned_cols=26 Identities=35% Similarity=0.728 Sum_probs=16.0
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHH
Q 030421 37 MRQVFDKFDTNKDGKISQDEYNSALS 62 (177)
Q Consensus 37 l~~~f~~~d~~~~g~l~~~e~~~~l~ 62 (177)
+..+|..+|.+++|.|+..+|..++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 34556666666666666666666554
No 105
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.97 E-value=0.0035 Score=37.22 Aligned_cols=64 Identities=16% Similarity=0.341 Sum_probs=40.7
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhcccc-ccchhHHHHHHHhhccC----CCCccCHHHHHHHHHH
Q 030421 72 EMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDN-RVKKNDIQGAFQLFDLN----GDKKISAEELMEVLRK 136 (177)
Q Consensus 72 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~-~~~~~~~~~~f~~~D~~----~~g~i~~~e~~~~l~~ 136 (177)
++..+|..+.. +.+.|+.++|..++...... ......+..++..|.++ ..+.++.++|..+|.+
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 35667777744 56677777777777654444 33456666666666443 4677888888887754
No 106
>PLN02952 phosphoinositide phospholipase C
Probab=96.86 E-value=0.016 Score=46.85 Aligned_cols=87 Identities=16% Similarity=0.325 Sum_probs=55.2
Q ss_pred CCcccHHHHHHHHHhcc-ccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHhCC--CCCHHHHHHHHHhhcC------
Q 030421 85 DGYIDFKEFIEMMHDMG-DNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGE--KYSLDSCRKMIRGVDA------ 155 (177)
Q Consensus 85 ~g~i~~~ef~~~~~~~~-~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~------ 155 (177)
.|.++|++|..+...+. .....+.++..+|..+-. +.+.|+.++|..+|..... ..+.+.+..++..+-.
T Consensus 14 ~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~ 92 (599)
T PLN02952 14 SGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVT 92 (599)
T ss_pred CCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccc
Confidence 46788888877766442 122345678888888754 3367888888888877643 3455666666554311
Q ss_pred -CCCCcccHHHHHHHHHh
Q 030421 156 -DGDGLIDMDEFMTMMTR 172 (177)
Q Consensus 156 -~~~g~is~~ef~~~l~~ 172 (177)
...+.++++.|..+|.+
T Consensus 93 ~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 93 RYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred cccccCcCHHHHHHHHcC
Confidence 12234788888888764
No 107
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.0062 Score=49.87 Aligned_cols=68 Identities=31% Similarity=0.506 Sum_probs=58.5
Q ss_pred CcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 30 SRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHD 99 (177)
Q Consensus 30 ~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 99 (177)
.......++.+|+.+|+..+|+|+-.+-+.+|-..+ ++...+..||..-|.|+||.++.+||+-.+..
T Consensus 190 p~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 190 PQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred cchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 345566888999999999999999999998887754 56678899999999999999999999988763
No 108
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.73 E-value=0.0057 Score=45.45 Aligned_cols=109 Identities=20% Similarity=0.203 Sum_probs=81.9
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhhC---CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHH
Q 030421 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLG---KGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQ 111 (177)
Q Consensus 35 ~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~---~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 111 (177)
.+|+.+|..+-.+.++......+...-..+. .+.-+..+.-+|..+|.+.++.++..|...+... .++..++
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld-----knE~Cik 285 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELD-----KNEACIK 285 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhcc-----CchhHHH
Confidence 4788899888676666665555554433332 2345778999999999999999999998877553 4667899
Q ss_pred HHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHH
Q 030421 112 GAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKM 149 (177)
Q Consensus 112 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 149 (177)
..|...|..++|.|+..|+-..+...+ .+...++..+
T Consensus 286 pFfnsCD~~kDg~iS~~EWC~CF~k~~-~pc~~e~~ri 322 (434)
T KOG3555|consen 286 PFFNSCDTYKDGSISTNEWCYCFQKSD-PPCQAELCRI 322 (434)
T ss_pred HHHhhhcccccCccccchhhhhhccCC-CccccHHHHH
Confidence 999999999999999999999988776 3333344443
No 109
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.55 E-value=0.12 Score=43.50 Aligned_cols=121 Identities=14% Similarity=0.280 Sum_probs=86.4
Q ss_pred cCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcC--CCCCc-----ccHHHHHHHHHhccccccchhHHHHHHHhh
Q 030421 45 DTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDT--DKDGY-----IDFKEFIEMMHDMGDNRVKKNDIQGAFQLF 117 (177)
Q Consensus 45 d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~--~~~g~-----i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~ 117 (177)
..+..|.|..+.+..++.. +-.+..+...+..+.. +.+.. .+++.|..++..+ ..+.++..+|..+
T Consensus 158 qvn~~grip~knI~k~F~~---~k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~kl----cpR~eie~iF~ki 230 (1189)
T KOG1265|consen 158 QVNFEGRIPVKNIIKTFSA---DKKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKL----CPRPEIEEIFRKI 230 (1189)
T ss_pred cccccccccHHHHHHHhhc---CCchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhc----CCchhHHHHHHHh
Confidence 4456788887777665543 2222334444443322 22223 4677777777766 3446899999999
Q ss_pred ccCCCCccCHHHHHHHHHHh----------CCCCCHHHHHHHHHhhcCC----CCCcccHHHHHHHHHh
Q 030421 118 DLNGDKKISAEELMEVLRKM----------GEKYSLDSCRKMIRGVDAD----GDGLIDMDEFMTMMTR 172 (177)
Q Consensus 118 D~~~~g~i~~~e~~~~l~~~----------~~~~~~~~~~~~~~~~d~~----~~g~is~~ef~~~l~~ 172 (177)
..++.-++|.++|..+|..- .....+..+..++..+.+| ..|++|-+.|+.++..
T Consensus 231 ~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 231 SGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred ccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 99988999999999999754 2466788999999999776 5688999999999887
No 110
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.41 E-value=0.012 Score=45.96 Aligned_cols=74 Identities=16% Similarity=0.260 Sum_probs=63.1
Q ss_pred CCCcCCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 030421 25 SVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDM 100 (177)
Q Consensus 25 ~~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 100 (177)
.-.+++.++.+.+..-|.-+.+|-.|.|+..--+.++... .+.-.++..||...|.+.+|.+++.||+..+...
T Consensus 221 ~pw~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 221 TPWQITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred CccccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 4457788888889999999999999999988888877663 5677889999999999999999999999998743
No 111
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=96.40 E-value=0.04 Score=45.21 Aligned_cols=98 Identities=12% Similarity=0.307 Sum_probs=74.3
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHH
Q 030421 69 SKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRK 148 (177)
Q Consensus 69 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~ 148 (177)
....+..+|...|.+.+|.+++.+-..++..+ ........+..+|+..+...++.+...+++.+........ ++..
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~-n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~ 209 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQL-NVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYF 209 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHH-HHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHH
Confidence 34568888999999999999999998887743 3334556788899999999999999999999998876442 6666
Q ss_pred HHHhhcCCCCCcccHHHHHHHHH
Q 030421 149 MIRGVDADGDGLIDMDEFMTMMT 171 (177)
Q Consensus 149 ~~~~~d~~~~g~is~~ef~~~l~ 171 (177)
+|..+..+ .+.++.++++.++.
T Consensus 210 ~f~~~s~~-~~~ls~~~L~~Fl~ 231 (746)
T KOG0169|consen 210 LFVQYSHG-KEYLSTDDLLRFLE 231 (746)
T ss_pred HHHHHhCC-CCccCHHHHHHHHH
Confidence 66666433 56666666665554
No 112
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=96.11 E-value=0.049 Score=36.78 Aligned_cols=36 Identities=11% Similarity=0.279 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhcc
Q 030421 140 KYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRNVK 175 (177)
Q Consensus 140 ~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~~~ 175 (177)
.+.++..+++|..+.....+.+++.|...++..+..
T Consensus 92 rFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~ 127 (174)
T PF05042_consen 92 RFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRN 127 (174)
T ss_pred cCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccc
Confidence 445778888999888877888999999988887654
No 113
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.06 E-value=0.042 Score=36.76 Aligned_cols=61 Identities=15% Similarity=0.364 Sum_probs=39.6
Q ss_pred HHHHhh---ccCCCCccCHHHHHHHHHHhCC---CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 112 GAFQLF---DLNGDKKISAEELMEVLRKMGE---KYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172 (177)
Q Consensus 112 ~~f~~~---D~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 172 (177)
.+|..| ...+...|+-..|..+|+..+. .++...++-+|..+.......|+|++|+..|..
T Consensus 3 ~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 3 AVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 444444 3444556777888888887642 577777888888776666667888888877764
No 114
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=95.96 E-value=0.13 Score=31.03 Aligned_cols=65 Identities=18% Similarity=0.274 Sum_probs=42.1
Q ss_pred hHHHHHHHhhccCCCCccCHHHHHHHHHHh-------CC----CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhcc
Q 030421 108 NDIQGAFQLFDLNGDKKISAEELMEVLRKM-------GE----KYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRNVK 175 (177)
Q Consensus 108 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-------~~----~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~~~ 175 (177)
++.+.+|..+ .|++|.++...|..+|... |+ .-.+..++.+|... .....|+.++|+.++..-++
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ePq 78 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSEPQ 78 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--T
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhCCC
Confidence 5778889888 6788999999988888753 32 12567778888765 35667999999999987654
No 115
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.92 E-value=0.07 Score=35.70 Aligned_cols=65 Identities=14% Similarity=0.360 Sum_probs=48.9
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhhC---CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 030421 36 EMRQVFDKFDTNKDGKISQDEYNSALSVLG---KGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDM 100 (177)
Q Consensus 36 ~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~---~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 100 (177)
.+...|..+...+...++-..|..+++..+ ..++..++..+|..+...+...|+|++|+.++..+
T Consensus 3 ~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 3 AVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 344455555555677899999999998864 45889999999999877777789999999998743
No 116
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.47 E-value=0.045 Score=43.63 Aligned_cols=75 Identities=13% Similarity=0.337 Sum_probs=66.3
Q ss_pred cCCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccc
Q 030421 28 RASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGD 102 (177)
Q Consensus 28 ~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 102 (177)
.++++++...+..|..+|.++.|+++..++...+...+...+.+.++.+.+..+.+-+|.+...+|..++.....
T Consensus 586 ~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~ 660 (680)
T KOG0042|consen 586 KLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKN 660 (680)
T ss_pred ccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhc
Confidence 457888889999999999999999999999999999888889999999999998888999999999998876433
No 117
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.45 E-value=0.099 Score=32.80 Aligned_cols=69 Identities=26% Similarity=0.349 Sum_probs=42.1
Q ss_pred CCCcCCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh------CC----CCCHHHHHHHHH----hhcCCCCCcccH
Q 030421 25 SVPRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVL------GK----GISKAEMAKSFR----FIDTDKDGYIDF 90 (177)
Q Consensus 25 ~~~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l------~~----~~~~~~~~~~~~----~~d~~~~g~i~~ 90 (177)
....+++++..- -.|++.|-+++|.|+--|+..++... |. -.++.++.+++. .-|.+++|.|+|
T Consensus 59 ~~a~mtpeqlqf--HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDY 136 (144)
T KOG4065|consen 59 KVAKMTPEQLQF--HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDY 136 (144)
T ss_pred hhhhCCHHHHhh--hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeH
Confidence 355555555432 25788999999999988887776543 22 123444444433 335566777777
Q ss_pred HHHHH
Q 030421 91 KEFIE 95 (177)
Q Consensus 91 ~ef~~ 95 (177)
-||+.
T Consensus 137 gEflK 141 (144)
T KOG4065|consen 137 GEFLK 141 (144)
T ss_pred HHHHh
Confidence 77764
No 118
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.35 E-value=0.033 Score=48.90 Aligned_cols=62 Identities=16% Similarity=0.388 Sum_probs=52.5
Q ss_pred HHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc
Q 030421 112 GAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRNV 174 (177)
Q Consensus 112 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~~ 174 (177)
.-|+.||+|+.|.|+..+|...+.... +.+..+++-++.-...|.+..++|++|...++...
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~dend~~~y~dfv~rfhepa 4122 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEADENDMFDYEDFVDRFHEPA 4122 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhccCccccccHHHHHHHhcCch
Confidence 347889999999999999999987654 45677888898888889999999999999887644
No 119
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.32 E-value=0.014 Score=43.18 Aligned_cols=63 Identities=21% Similarity=0.264 Sum_probs=44.9
Q ss_pred HHHHHHhhccCCCCccCHHHHHHHHHHhCC-CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 110 IQGAFQLFDLNGDKKISAEELMEVLRKMGE-KYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172 (177)
Q Consensus 110 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 172 (177)
+..-|..+|.|+++.|.+.|++.+=.-+-. .-...-.+.+++..|.|+|.+||++|+...|..
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 445578889999999988887655443322 122344677788888899999999998888754
No 120
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=95.08 E-value=0.036 Score=44.68 Aligned_cols=107 Identities=15% Similarity=0.288 Sum_probs=74.5
Q ss_pred CCCCCCcCCcchHHHHHHHHHhh-----------cCCCC---CcccHHHHHHHHHhhC-CCCCHHHHHHHHHhhcCCCCC
Q 030421 22 QNPSVPRASRSNVQEMRQVFDKF-----------DTNKD---GKISQDEYNSALSVLG-KGISKAEMAKSFRFIDTDKDG 86 (177)
Q Consensus 22 ~~~~~~~~~~~~~~~l~~~f~~~-----------d~~~~---g~l~~~e~~~~l~~l~-~~~~~~~~~~~~~~~d~~~~g 86 (177)
.......++..++..++.+|..- |++-. -++...+|..+++.+. ...+...+.++|+..|...+|
T Consensus 491 s~~~~~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g 570 (671)
T KOG4347|consen 491 SVVQTTSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTG 570 (671)
T ss_pred hhcccCccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcc
Confidence 34455566777777777777531 11111 1355555666655543 233455678899999999999
Q ss_pred cccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHHHH
Q 030421 87 YIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEEL 130 (177)
Q Consensus 87 ~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~ 130 (177)
.++|.+++..+..+ .....-+.+..+|+.+|.+++ .++.++.
T Consensus 571 ~Ltf~~lv~gL~~l-~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 571 LLTFKDLVSGLSIL-KAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred eeEHHHHHHHHHHH-HhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 99999999998854 333445688999999999999 8888887
No 121
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=95.06 E-value=0.082 Score=39.03 Aligned_cols=60 Identities=28% Similarity=0.459 Sum_probs=45.0
Q ss_pred HHHHHhhccCCCCccCHHHHHHHHHHh-----CCCCCHHH-----------HHHHHHhhcCCCCCcccHHHHHHHH
Q 030421 111 QGAFQLFDLNGDKKISAEELMEVLRKM-----GEKYSLDS-----------CRKMIRGVDADGDGLIDMDEFMTMM 170 (177)
Q Consensus 111 ~~~f~~~D~~~~g~i~~~e~~~~l~~~-----~~~~~~~~-----------~~~~~~~~d~~~~g~is~~ef~~~l 170 (177)
+..|...|.|++|+++..|+..++..- ...-.+++ -+.+++.+|.|.|..|++++|++.-
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 455777899999999999999988653 11111111 2456888899999999999999864
No 122
>PLN02952 phosphoinositide phospholipase C
Probab=95.00 E-value=0.41 Score=39.11 Aligned_cols=87 Identities=8% Similarity=0.081 Sum_probs=61.2
Q ss_pred CCCcccHHHHHHHHHhhCC--CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccc-cchhHHHHHHHhh----c--
Q 030421 48 KDGKISQDEYNSALSVLGK--GISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNR-VKKNDIQGAFQLF----D-- 118 (177)
Q Consensus 48 ~~g~l~~~e~~~~l~~l~~--~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~-~~~~~~~~~f~~~----D-- 118 (177)
+.|.+++++|..+.+.+-. .....++..+|..+..++ +.++.++|..++....... ...+....++..+ .
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 4689999999988887642 236789999999986544 6899999999998655432 3334445554432 1
Q ss_pred -cCCCCccCHHHHHHHHH
Q 030421 119 -LNGDKKISAEELMEVLR 135 (177)
Q Consensus 119 -~~~~g~i~~~e~~~~l~ 135 (177)
..+.+.++.+.|..+|.
T Consensus 92 ~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred ccccccCcCHHHHHHHHc
Confidence 12335689999999985
No 123
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.94 E-value=0.086 Score=41.41 Aligned_cols=60 Identities=17% Similarity=0.249 Sum_probs=51.7
Q ss_pred HHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 030421 110 IQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMT 171 (177)
Q Consensus 110 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 171 (177)
.-.-|+.+-.|-.|.|+-.--++++.... +...++..||...|.+.||.+++.||...++
T Consensus 233 YvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 233 YVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 44567788888999999999999997665 7788999999999999999999999998875
No 124
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.76 E-value=0.072 Score=42.56 Aligned_cols=64 Identities=16% Similarity=0.388 Sum_probs=58.1
Q ss_pred HHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 109 DIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172 (177)
Q Consensus 109 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 172 (177)
..+.-|..+|.++.|.++..+...+|+..+..++++.+.++.+..+.+.+|.+...+|.+++..
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 3556788999999999999999999999999999999999999999999999999999988654
No 125
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=94.42 E-value=0.029 Score=41.62 Aligned_cols=66 Identities=23% Similarity=0.244 Sum_probs=50.9
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHh
Q 030421 72 EMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM 137 (177)
Q Consensus 72 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 137 (177)
.+...|..+|.+.++.|+-.|+.-+=..+..........+.+|+..|.|+|-.|+..|++..|...
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 456678889999999898777665544333333445678899999999999999999999988643
No 126
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=93.73 E-value=0.11 Score=38.84 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=52.2
Q ss_pred hHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 108 NDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172 (177)
Q Consensus 108 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 172 (177)
..+--+|..+|.+.+|.++..|++.+-. .-.+.-+..+|...|...||.||-.||...+..
T Consensus 250 ds~gWMFnklD~N~Dl~Ld~sEl~~I~l----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 250 DSLGWMFNKLDTNYDLLLDQSELRAIEL----DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhhhccccccccccCHHHhhhhhc----cCchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 4688899999999999999999987653 234667889999999999999999999988764
No 127
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=93.55 E-value=0.043 Score=31.30 Aligned_cols=56 Identities=18% Similarity=0.311 Sum_probs=39.1
Q ss_pred hhHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCC-------CCCcccHHHHHHHH
Q 030421 107 KNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDAD-------GDGLIDMDEFMTMM 170 (177)
Q Consensus 107 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-------~~g~is~~ef~~~l 170 (177)
.+.+..+|+.+ .+++++||.+||+..|. ++.++.+.+.+.+- ..|.++|..|.+.|
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l~-------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~l 67 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSLT-------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNSL 67 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHCCC
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHcC-------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHHH
Confidence 46889999999 67789999999999873 33445666555321 23668888887543
No 128
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=93.23 E-value=0.32 Score=41.19 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=55.1
Q ss_pred hhHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCH-----HHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 030421 107 KNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSL-----DSCRKMIRGVDADGDGLIDMDEFMTMMTRN 173 (177)
Q Consensus 107 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~-----~~~~~~~~~~d~~~~g~is~~ef~~~l~~~ 173 (177)
..+++..|..++....|.++.++|..+|..+|...-. .++..++...+++..|++++.+|...|.+.
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 4578999999999999999999999999999976664 234555666677778999999999998764
No 129
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=93.18 E-value=0.2 Score=40.62 Aligned_cols=57 Identities=16% Similarity=0.182 Sum_probs=45.0
Q ss_pred hhHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHH
Q 030421 107 KNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMD 164 (177)
Q Consensus 107 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ 164 (177)
..-++++|+.+|.+++|.|+..++...|..+...-.-+.+.-+++.++++.+ ....+
T Consensus 554 ~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e 610 (671)
T KOG4347|consen 554 LIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDRE 610 (671)
T ss_pred HHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccc
Confidence 3468899999999999999999999999887544445667778888888776 54444
No 130
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=92.64 E-value=0.71 Score=38.89 Aligned_cols=139 Identities=15% Similarity=0.202 Sum_probs=82.8
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHH-HHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchh--HHHH
Q 030421 36 EMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKA-EMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKN--DIQG 112 (177)
Q Consensus 36 ~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~-~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~--~~~~ 112 (177)
.++..+-..|......|+..+++..+...++..+.. .++.-|... ....+.++|++|..+...++.....-. ....
T Consensus 145 wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted-~~~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~ 223 (1267)
T KOG1264|consen 145 WLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTED-GARKDDLSFEQFHLLYKKLMFSQQKAILLEFKK 223 (1267)
T ss_pred HHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHh-hhccccccHHHHHHHHHHHhhccchhhhhcccc
Confidence 455556666766677899999999888776655432 333333322 234567999999999876543321111 1111
Q ss_pred HH--HhhccCCCCccCHHHHHHHHHHhCCCCCHH---HHHHHHHhhcC-----CCCCcccHHHHHHHHHhhcc
Q 030421 113 AF--QLFDLNGDKKISAEELMEVLRKMGEKYSLD---SCRKMIRGVDA-----DGDGLIDMDEFMTMMTRNVK 175 (177)
Q Consensus 113 ~f--~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~---~~~~~~~~~d~-----~~~g~is~~ef~~~l~~~~~ 175 (177)
.| ..-+...--.++..||.++|.......... .++.++..+-. -....+.+.||+.+|.+.-+
T Consensus 224 ~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLFSreN 296 (1267)
T KOG1264|consen 224 DFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLFSREN 296 (1267)
T ss_pred hhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHhhccc
Confidence 11 112222235699999999997654322222 34444554422 25567999999999987654
No 131
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=92.32 E-value=0.15 Score=32.06 Aligned_cols=31 Identities=10% Similarity=0.342 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 030421 141 YSLDSCRKMIRGVDADGDGLIDMDEFMTMMT 171 (177)
Q Consensus 141 ~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 171 (177)
+++++++.++..+-.|..|.|.|.||+..+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 6889999999999999999999999998775
No 132
>PLN02228 Phosphoinositide phospholipase C
Probab=92.06 E-value=1.1 Score=36.49 Aligned_cols=28 Identities=14% Similarity=0.435 Sum_probs=12.2
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 030421 69 SKAEMAKSFRFIDTDKDGYIDFKEFIEMMH 98 (177)
Q Consensus 69 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 98 (177)
+..++..+|..+..+ +.++.++|..++.
T Consensus 22 ~~~ei~~if~~~s~~--~~~t~~~~~~FL~ 49 (567)
T PLN02228 22 PPVSIKRLFEAYSRN--GKMSFDELLRFVS 49 (567)
T ss_pred CcHHHHHHHHHhcCC--CccCHHHHHHHHH
Confidence 344444444444321 2344444444444
No 133
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=91.92 E-value=1.5 Score=26.94 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=53.6
Q ss_pred CCCcccHHHHHHHHHhhC--CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCcc
Q 030421 48 KDGKISQDEYNSALSVLG--KGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKI 125 (177)
Q Consensus 48 ~~g~l~~~e~~~~l~~l~--~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i 125 (177)
-||.++..|...+-..+. +.++..+...++..+........++.+|...+............+..+|...- -||.+
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~--ADG~~ 89 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAY--ADGEL 89 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--hcCCC
Confidence 378888888776654432 35677777777777766555667888888887753322223345666666654 34778
Q ss_pred CHHHHHHH
Q 030421 126 SAEELMEV 133 (177)
Q Consensus 126 ~~~e~~~~ 133 (177)
+..|-.-+
T Consensus 90 ~~~E~~~l 97 (104)
T cd07313 90 DEYEEHLI 97 (104)
T ss_pred CHHHHHHH
Confidence 77765443
No 134
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=91.67 E-value=0.46 Score=31.12 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=41.6
Q ss_pred CCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCC-------CCCcccHHHHHHHHHhccccccchhHHHHHHHhhccC
Q 030421 48 KDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTD-------KDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLN 120 (177)
Q Consensus 48 ~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~-------~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~ 120 (177)
..+.|+..||.++-..+. .+...++.++..|..+ ..+.|+|+.|..+|..........+-.+.+|..|-..
T Consensus 4 ~~~~lsp~eF~qLq~y~e--ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 4 EWVSLSPEEFAQLQKYSE--YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp --S-S-HHHHHHHHHHHH--H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS---
T ss_pred ceeccCHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 467889999988655442 2445677777776433 3568999999999987766667777888899888544
Q ss_pred C
Q 030421 121 G 121 (177)
Q Consensus 121 ~ 121 (177)
.
T Consensus 82 ~ 82 (138)
T PF14513_consen 82 P 82 (138)
T ss_dssp -
T ss_pred c
Confidence 3
No 135
>PLN02222 phosphoinositide phospholipase C 2
Probab=91.61 E-value=0.96 Score=36.92 Aligned_cols=63 Identities=13% Similarity=0.284 Sum_probs=32.5
Q ss_pred hHHHHHHHhhccCCCCccCHHHHHHHHHHhCC--CCCHHHHHHHHHhhcC-CCCCcccHHHHHHHHHh
Q 030421 108 NDIQGAFQLFDLNGDKKISAEELMEVLRKMGE--KYSLDSCRKMIRGVDA-DGDGLIDMDEFMTMMTR 172 (177)
Q Consensus 108 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~-~~~g~is~~ef~~~l~~ 172 (177)
.++..+|..+-. ++.++.++|..+|..... ..+.+.+..++..+.. ...+.++++.|..+|.+
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 355556655532 345666666666655432 2345555555555421 12344666666666654
No 136
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.40 E-value=0.2 Score=42.69 Aligned_cols=72 Identities=31% Similarity=0.503 Sum_probs=63.4
Q ss_pred CcCCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhc
Q 030421 27 PRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDM 100 (177)
Q Consensus 27 ~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 100 (177)
+.+++.....+..+|...|.+++|.|+..+....+.. .++....+..+|...+....|.+++.+|.-.+..+
T Consensus 275 ~~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 275 PKVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLL 346 (847)
T ss_pred cccChHHHHHHHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhhhh
Confidence 4677888889999999999999999999999888866 56788899999999999999999999988887643
No 137
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=91.06 E-value=0.56 Score=41.90 Aligned_cols=58 Identities=21% Similarity=0.533 Sum_probs=49.0
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 030421 40 VFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMH 98 (177)
Q Consensus 40 ~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 98 (177)
.|..+|+++.|.|+..+|..++..- ...+..++..++.-...+.+...+|++|+.-+.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 4567899999999999999988653 356778888888888889999999999998764
No 138
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=89.31 E-value=2 Score=28.14 Aligned_cols=67 Identities=12% Similarity=0.223 Sum_probs=41.1
Q ss_pred CcccHHHHHHHHHhccccccchhHHHHHHHhh-------ccCCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHhhcC
Q 030421 86 GYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLF-------DLNGDKKISAEELMEVLRKM-GEKYSLDSCRKMIRGVDA 155 (177)
Q Consensus 86 g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~-------D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~ 155 (177)
+.++.+||.++-.....+. .+++.+.+.| -.+..+.|+.+.|+.+|+.. ...++++-+..+|..+..
T Consensus 6 ~~lsp~eF~qLq~y~eys~---kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~ 80 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEYST---KKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQK 80 (138)
T ss_dssp S-S-HHHHHHHHHHHHH-------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS--
T ss_pred eccCHHHHHHHHHHHHHHH---HHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC
Confidence 5688889988865443322 3566665555 23445689999999999986 557888889999988844
No 139
>PLN02230 phosphoinositide phospholipase C 4
Probab=88.59 E-value=2.5 Score=34.70 Aligned_cols=66 Identities=17% Similarity=0.319 Sum_probs=45.3
Q ss_pred chhHHHHHHHhhccCCCCccCHHHHHHHHHHhCC---CCCHHHHHHHHHhhcCC-------CCCcccHHHHHHHHHh
Q 030421 106 KKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGE---KYSLDSCRKMIRGVDAD-------GDGLIDMDEFMTMMTR 172 (177)
Q Consensus 106 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d~~-------~~g~is~~ef~~~l~~ 172 (177)
...++..+|..|-.++ +.++.++|..+|..... ..+.+++..++..+... ..+.++++.|..+|.+
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 3467888888885333 78888888888887652 34566666776554221 2345899999988876
No 140
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=88.53 E-value=0.9 Score=33.78 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=10.5
Q ss_pred HhhccCCCCccCHHHHHHHH
Q 030421 115 QLFDLNGDKKISAEELMEVL 134 (177)
Q Consensus 115 ~~~D~~~~g~i~~~e~~~~l 134 (177)
+..|.|.+..||.+||...-
T Consensus 303 k~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 303 KQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred HhcccchhhhhhHHHHHhhh
Confidence 44555555555555554433
No 141
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=88.49 E-value=5.1 Score=33.69 Aligned_cols=137 Identities=13% Similarity=0.135 Sum_probs=82.4
Q ss_pred HHHHHHHHHhhcCCC-CCcccHHHHHHHHHhh--------CC----CCCHH-HHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 34 VQEMRQVFDKFDTNK-DGKISQDEYNSALSVL--------GK----GISKA-EMAKSFRFIDTDKDGYIDFKEFIEMMHD 99 (177)
Q Consensus 34 ~~~l~~~f~~~d~~~-~g~l~~~e~~~~l~~l--------~~----~~~~~-~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 99 (177)
..-+..+|.+++..+ +-.+...+...+|..+ |. ++--+ -++.+++.||+..+|.|..-.|...+..
T Consensus 419 ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i~ 498 (966)
T KOG4286|consen 419 LSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGIIS 498 (966)
T ss_pred HHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhHHH
Confidence 344556677776653 3345555544433221 21 11111 2467788999999999887777776654
Q ss_pred ccccccchhHHHHHHHhhccCCCCccCHHHHHHHHH-------Hh------CCCCCHHHHHHHHHhhcCCCCCcccHHHH
Q 030421 100 MGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLR-------KM------GEKYSLDSCRKMIRGVDADGDGLIDMDEF 166 (177)
Q Consensus 100 ~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~-------~~------~~~~~~~~~~~~~~~~d~~~~g~is~~ef 166 (177)
+.+. ...+.++.+|.....++...+ ...|-.+|. .+ |..--+--++.+|.. .++...|++..|
T Consensus 499 lck~-~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsNvepsvrsCF~~--v~~~pei~~~~f 574 (966)
T KOG4286|consen 499 LCKA-HLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSNIEPSVRSCFQF--VNNKPEIEAALF 574 (966)
T ss_pred Hhcc-hhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCCCChHHHHHHHh--cCCCCcchHHHH
Confidence 4333 445688899998876665443 444544443 22 332234467888874 466778999999
Q ss_pred HHHHHhhc
Q 030421 167 MTMMTRNV 174 (177)
Q Consensus 167 ~~~l~~~~ 174 (177)
+..+.--+
T Consensus 575 ~dw~~~ep 582 (966)
T KOG4286|consen 575 LDWMRLEP 582 (966)
T ss_pred HHHhccCc
Confidence 98876543
No 142
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=87.33 E-value=4.7 Score=24.36 Aligned_cols=61 Identities=16% Similarity=0.328 Sum_probs=33.5
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhh-------C----CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 030421 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVL-------G----KGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMH 98 (177)
Q Consensus 35 ~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l-------~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 98 (177)
.+++.+|+.+ .|.+|.++...|..+|+.+ | +...+..++..|.... ....|+.++|+..+.
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHH
Confidence 4567788887 6778888888888877663 1 2224445555555442 234566677766665
No 143
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.18 E-value=1.8 Score=36.05 Aligned_cols=80 Identities=23% Similarity=0.446 Sum_probs=53.2
Q ss_pred CCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHh---C-----CCCCHHHHHHHHHhhcCC
Q 030421 85 DGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM---G-----EKYSLDSCRKMIRGVDAD 156 (177)
Q Consensus 85 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~---~-----~~~~~~~~~~~~~~~d~~ 156 (177)
++ +++++|. ......+++++..|..+|. .+|.++.+++..++... + .....+....++...+.+
T Consensus 2 ~~-~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 45 7777777 2222456688888888887 78888888887777653 1 233344456666777777
Q ss_pred CCCcccHHHHHHHHHh
Q 030421 157 GDGLIDMDEFMTMMTR 172 (177)
Q Consensus 157 ~~g~is~~ef~~~l~~ 172 (177)
+.|.+.++++...+..
T Consensus 74 ~~~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 74 HKGYITNEDLEILLLQ 89 (646)
T ss_pred ccceeeecchhHHHHh
Confidence 7777777776666554
No 144
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=87.13 E-value=1.7 Score=35.32 Aligned_cols=87 Identities=18% Similarity=0.248 Sum_probs=57.4
Q ss_pred cCCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCC----CHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcccc
Q 030421 28 RASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGI----SKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDN 103 (177)
Q Consensus 28 ~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~----~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 103 (177)
.+++.-+..+..+|..+|.+++|.++..|+..++...+..+ ...+. --.+..|.+++.-|+..+..+..-
T Consensus 308 ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~------t~~~~~G~ltl~g~l~~WsL~Tll 381 (625)
T KOG1707|consen 308 ELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDS------TVKNERGWLTLNGFLSQWSLMTLL 381 (625)
T ss_pred eccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCccccc------ceecccceeehhhHHHHHHHHhhc
Confidence 45667788999999999999999999999999998875333 10000 012257889999999988754332
Q ss_pred ccchhHHHHHHHhhccC
Q 030421 104 RVKKNDIQGAFQLFDLN 120 (177)
Q Consensus 104 ~~~~~~~~~~f~~~D~~ 120 (177)
......-.-+|--|..+
T Consensus 382 d~~~t~~~L~Ylgf~~~ 398 (625)
T KOG1707|consen 382 DPRRTLEYLAYLGFPTD 398 (625)
T ss_pred cHHHHHHHHHhcCCccc
Confidence 22222223344445544
No 145
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=86.40 E-value=2 Score=26.33 Aligned_cols=61 Identities=23% Similarity=0.388 Sum_probs=35.2
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCC---CCCcccHHHHHHHHHhc
Q 030421 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTD---KDGYIDFKEFIEMMHDM 100 (177)
Q Consensus 35 ~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~---~~g~i~~~ef~~~~~~~ 100 (177)
..+..-|..+.. +|+|+.++|..++ |..-+++....+|..+... ....|+-+|+..++..+
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 456666777755 7788888887665 4445666677777654221 13467777777766543
No 146
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=86.22 E-value=5.2 Score=23.82 Aligned_cols=33 Identities=12% Similarity=0.223 Sum_probs=19.4
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCC
Q 030421 124 KISAEELMEVLRKMGEKYSLDSCRKMIRGVDAD 156 (177)
Q Consensus 124 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~ 156 (177)
.||..||..+.+..+.+++++..+.++..+-.+
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k 46 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILRGK 46 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 356666666666666666666666665555333
No 147
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=86.06 E-value=1.1 Score=25.73 Aligned_cols=49 Identities=18% Similarity=0.313 Sum_probs=35.3
Q ss_pred CCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHh
Q 030421 85 DGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM 137 (177)
Q Consensus 85 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 137 (177)
+-.++|......+... .....+..+...|+.-+.+.|+++||...++.+
T Consensus 6 sp~~~F~~L~~~l~~~----l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKH----LPPSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CCcccHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3457777777777754 444566666666666678899999999999876
No 148
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=84.52 E-value=8.6 Score=24.84 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=20.0
Q ss_pred HHHHHHHhhccCCCCccCHHHHHHHHHH
Q 030421 109 DIQGAFQLFDLNGDKKISAEELMEVLRK 136 (177)
Q Consensus 109 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 136 (177)
.+..++..||.+++|.|+.-.|+..+..
T Consensus 98 ~ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 98 LLNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 3556788899999999999999887754
No 149
>PLN02228 Phosphoinositide phospholipase C
Probab=83.63 E-value=8.6 Score=31.56 Aligned_cols=62 Identities=16% Similarity=0.344 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCC--CCCHHHHHHHHHhhcCC----CCCcccHHHHHHHH
Q 030421 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGK--GISKAEMAKSFRFIDTD----KDGYIDFKEFIEMM 97 (177)
Q Consensus 34 ~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~--~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~~ 97 (177)
..++..+|..+.. ++.++.++|..+|..... ..+.+.+..++..+... ..|.++.+.|..++
T Consensus 23 ~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl 90 (567)
T PLN02228 23 PVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYL 90 (567)
T ss_pred cHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHh
Confidence 3456667777643 358999999999987653 35567788888887553 23568888777754
No 150
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=82.53 E-value=3.9 Score=23.40 Aligned_cols=48 Identities=19% Similarity=0.141 Sum_probs=26.6
Q ss_pred cccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcc
Q 030421 51 KISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMG 101 (177)
Q Consensus 51 ~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 101 (177)
.+++..+...+.. .++...+..+...|+.=..+.|+-++|+..+..+.
T Consensus 8 ~~~F~~L~~~l~~---~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IV 55 (70)
T PF12174_consen 8 WMPFPMLFSALSK---HLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIV 55 (70)
T ss_pred cccHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3554444444433 34555555555555444556677777777766543
No 151
>PLN02223 phosphoinositide phospholipase C
Probab=81.36 E-value=9.1 Score=31.11 Aligned_cols=66 Identities=12% Similarity=0.107 Sum_probs=42.7
Q ss_pred chhHHHHHHHhhccCCCCccCHHHHHHHH---HHh-C-CCCCHHHHHHHHHhhcCC--------CCCcccHHHHHHHHHh
Q 030421 106 KKNDIQGAFQLFDLNGDKKISAEELMEVL---RKM-G-EKYSLDSCRKMIRGVDAD--------GDGLIDMDEFMTMMTR 172 (177)
Q Consensus 106 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l---~~~-~-~~~~~~~~~~~~~~~d~~--------~~g~is~~ef~~~l~~ 172 (177)
..+.++.+|..|- ++.|.++.+.+..++ ... | ...+.++++.++..+-.. ..+.++.+.|..+|.+
T Consensus 14 ~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 3456777887773 566778888777777 443 2 245566666666655322 2255888888888866
No 152
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=80.49 E-value=25 Score=30.54 Aligned_cols=82 Identities=16% Similarity=0.349 Sum_probs=59.1
Q ss_pred ccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcccc---------ccchhHHHHHHHhhccC--
Q 030421 52 ISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDN---------RVKKNDIQGAFQLFDLN-- 120 (177)
Q Consensus 52 l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~---------~~~~~~~~~~f~~~D~~-- 120 (177)
.+++.|..++..+. ...++..||..+..+...+++.++++.++...... ..+..++..+.+.|..+
T Consensus 205 f~~e~f~~~l~klc---pR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~ 281 (1189)
T KOG1265|consen 205 FTLEKFYRLLNKLC---PRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSD 281 (1189)
T ss_pred ccHHHHHHHHHhcC---CchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchh
Confidence 34445566666654 33578999999988888899999999999754322 23345678888887655
Q ss_pred --CCCccCHHHHHHHHHH
Q 030421 121 --GDKKISAEELMEVLRK 136 (177)
Q Consensus 121 --~~g~i~~~e~~~~l~~ 136 (177)
.+|.|+.+-|...|..
T Consensus 282 ~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 282 NAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hhhccccchhhhHHHhhC
Confidence 5688999998887754
No 153
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=79.58 E-value=5.3 Score=22.11 Aligned_cols=32 Identities=28% Similarity=0.313 Sum_probs=28.6
Q ss_pred CccCHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 030421 123 KKISAEELMEVLRKMGEKYSLDSCRKMIRGVD 154 (177)
Q Consensus 123 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 154 (177)
-.+|.+|+..++..++...+..++-.+|.++-
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v~ 39 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQVH 39 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999998873
No 154
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=79.25 E-value=6.9 Score=30.68 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=12.4
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHH
Q 030421 70 KAEMAKSFRFIDTDKDGYIDFKEFIEM 96 (177)
Q Consensus 70 ~~~~~~~~~~~d~~~~g~i~~~ef~~~ 96 (177)
.+-++.|-+.+|.|.+|.|+.+|=-.+
T Consensus 67 ~EAir~iHrqmDDD~nG~Id~~ESdeF 93 (575)
T KOG4403|consen 67 YEAIRDIHRQMDDDHNGSIDVEESDEF 93 (575)
T ss_pred HHHHHHHHHhcccccCCCcccccchHH
Confidence 334444444455555555554443333
No 155
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.56 E-value=2.1 Score=32.77 Aligned_cols=64 Identities=19% Similarity=0.311 Sum_probs=47.1
Q ss_pred hhHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCH-HHHHHHHHhhcCCCCCcccHHHHHHHH
Q 030421 107 KNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSL-DSCRKMIRGVDADGDGLIDMDEFMTMM 170 (177)
Q Consensus 107 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~-~~~~~~~~~~d~~~~g~is~~ef~~~l 170 (177)
.+.++++|+.+|+.++|+|+-.-+++++.......++ ..+..+=+.+++..-|.|-..+|+.-+
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~ 372 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEF 372 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccc
Confidence 3579999999999999999999999999988744443 334444445577777777666665443
No 156
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=78.06 E-value=13 Score=22.80 Aligned_cols=60 Identities=15% Similarity=0.230 Sum_probs=28.3
Q ss_pred hHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcC---CCCCcccHHHHHHHHHh
Q 030421 108 NDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDA---DGDGLIDMDEFMTMMTR 172 (177)
Q Consensus 108 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~---~~~g~is~~ef~~~l~~ 172 (177)
..++.-|..+-. +|.|.+..|-+++ |-.-+++-..++|..+-. -....|+.+|+..++.+
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~q 92 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQ 92 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHH
Confidence 344555555544 5667766665554 333345555555554411 11345666666655544
No 157
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=77.87 E-value=8.3 Score=21.62 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=29.6
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 030421 121 GDKKISAEELMEVLRKMGEKYSLDSCRKMIRGV 153 (177)
Q Consensus 121 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 153 (177)
++-.|+.+-++.++..+|...|+..+..+++.+
T Consensus 28 ~NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 28 ENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 356799999999999999999999999998876
No 158
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=77.58 E-value=15 Score=23.01 Aligned_cols=55 Identities=15% Similarity=0.188 Sum_probs=41.9
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 030421 37 MRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEM 96 (177)
Q Consensus 37 l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 96 (177)
+...|-.++..++...+..+++.+|...|.....+.++.++..+ +|. +.+|.+..
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel----~GK-~i~ElIA~ 57 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSEL----KGK-DIEELIAA 57 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHh----cCC-CHHHHHHH
Confidence 34556666677777889999999999999999999999999887 333 55665543
No 159
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=77.08 E-value=6.1 Score=24.14 Aligned_cols=53 Identities=9% Similarity=0.092 Sum_probs=31.7
Q ss_pred CCcccHHHHHHHHHhccc-cccchhHHHHHHHhhccCCCCccCHHHHHHHHHHh
Q 030421 85 DGYIDFKEFIEMMHDMGD-NRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM 137 (177)
Q Consensus 85 ~g~i~~~ef~~~~~~~~~-~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 137 (177)
||.++-.|-..+-..+.. ..........++..+........+..+|...+...
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 66 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEH 66 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 677887775555443222 23344556666666665556667777777776654
No 160
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.05 E-value=9.1 Score=21.81 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=33.3
Q ss_pred HHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 030421 111 QGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVD 154 (177)
Q Consensus 111 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 154 (177)
++.+..+= ..+-.|+.+-++.++..+|...|+..++++++.+.
T Consensus 26 rk~~~k~l-k~NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 26 RKQMKKQL-KDNPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred HHHHHHHH-hhCCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 34444432 23467999999999999999999999999988763
No 161
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=77.04 E-value=13 Score=22.16 Aligned_cols=49 Identities=10% Similarity=0.096 Sum_probs=35.5
Q ss_pred CcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 030421 50 GKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMH 98 (177)
Q Consensus 50 g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 98 (177)
..||.+||..+.+..+..++...++.+...+..+.-.-.+-++-..++.
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llk 61 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLK 61 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 4688999999999999999999999888877554444444444444443
No 162
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=76.90 E-value=3.8 Score=23.41 Aligned_cols=27 Identities=7% Similarity=0.362 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 030421 34 VQEMRQVFDKFDTNKDGKISQDEYNSAL 61 (177)
Q Consensus 34 ~~~l~~~f~~~d~~~~g~l~~~e~~~~l 61 (177)
.+++.+.|+.+ .++.++||..||+..|
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l 31 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSL 31 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHc
Confidence 35788899999 7788999999998875
No 163
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=76.83 E-value=9.6 Score=23.72 Aligned_cols=71 Identities=17% Similarity=0.363 Sum_probs=48.2
Q ss_pred hhcCCCCCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHh---C-CCCCHHHHHHHHHhhc
Q 030421 79 FIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM---G-EKYSLDSCRKMIRGVD 154 (177)
Q Consensus 79 ~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~---~-~~~~~~~~~~~~~~~d 154 (177)
.+|...+.+|+.++...++..- .-|+..|.....-||+.-+.+++-+. | .-++...+..+++.++
T Consensus 11 LYDT~tS~YITLedi~~lV~~g-----------~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg 79 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVREG-----------REFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYG 79 (107)
T ss_pred ccCCCccceeeHHHHHHHHHCC-----------CeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhC
Confidence 4677778889999888887732 23556665544558888777777654 2 2467777888888776
Q ss_pred CCCCCc
Q 030421 155 ADGDGL 160 (177)
Q Consensus 155 ~~~~g~ 160 (177)
..-.|.
T Consensus 80 ~~~q~~ 85 (107)
T TIGR01848 80 GSMQSF 85 (107)
T ss_pred hhHHHH
Confidence 555443
No 164
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=76.00 E-value=5.2 Score=17.01 Aligned_cols=14 Identities=50% Similarity=0.795 Sum_probs=7.0
Q ss_pred ccCCCCccCHHHHH
Q 030421 118 DLNGDKKISAEELM 131 (177)
Q Consensus 118 D~~~~g~i~~~e~~ 131 (177)
|.+++|.|+.-++.
T Consensus 1 DvN~DG~vna~D~~ 14 (21)
T PF00404_consen 1 DVNGDGKVNAIDLA 14 (21)
T ss_dssp -TTSSSSSSHHHHH
T ss_pred CCCCCCcCCHHHHH
Confidence 34555555555543
No 165
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=75.85 E-value=17 Score=22.77 Aligned_cols=43 Identities=19% Similarity=0.340 Sum_probs=38.3
Q ss_pred HHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 030421 112 GAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVD 154 (177)
Q Consensus 112 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 154 (177)
.+|..+...++...+..+++.+|...|.....+.++.++..+.
T Consensus 5 aAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 5 AAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 4677788888888999999999999999999999999998873
No 166
>PLN02222 phosphoinositide phospholipase C 2
Probab=75.26 E-value=18 Score=29.84 Aligned_cols=63 Identities=13% Similarity=0.323 Sum_probs=44.1
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhhCC--CCCHHHHHHHHHhhcC-CCCCcccHHHHHHHHHh
Q 030421 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGK--GISKAEMAKSFRFIDT-DKDGYIDFKEFIEMMHD 99 (177)
Q Consensus 35 ~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~--~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~~~~ 99 (177)
.++..+|..+.. ++.++.++|..+|..... ..+.+.+..++..+.. ...+.++++.|..++..
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 366777777643 468999999888877653 3467778888876532 23556888888888763
No 167
>PRK00523 hypothetical protein; Provisional
Probab=74.21 E-value=11 Score=21.64 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=33.7
Q ss_pred HHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 030421 111 QGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGV 153 (177)
Q Consensus 111 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 153 (177)
+..|+.+= .++-.|+.+-++.++..+|...|+..+..+++.+
T Consensus 27 rk~~~k~l-~~NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 27 KKMFKKQI-RENPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred HHHHHHHH-HHCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 44454442 3356799999999999999999999999999876
No 168
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=71.88 E-value=4.8 Score=25.48 Aligned_cols=31 Identities=10% Similarity=0.440 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 030421 68 ISKAEMAKSFRFIDTDKDGYIDFKEFIEMMH 98 (177)
Q Consensus 68 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 98 (177)
++.+.++.+|..+-.+..|.|.|.+|+.-+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 5788899999999999999999999998876
No 169
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=71.70 E-value=6.2 Score=25.51 Aligned_cols=80 Identities=21% Similarity=0.303 Sum_probs=44.0
Q ss_pred CCCcccHHHHHHHHHhh--CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCcc
Q 030421 48 KDGKISQDEYNSALSVL--GKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKI 125 (177)
Q Consensus 48 ~~g~l~~~e~~~~l~~l--~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i 125 (177)
-||.++.+|...+...+ ...++......+...++......+++.+|+..+............+..++...-.| |.+
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~AD--G~~ 113 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYAD--GEI 113 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTCT--TC-
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhcC--CCC
Confidence 47889999988776655 23444555555655554433346777888776664222222334566667776655 555
Q ss_pred CHHH
Q 030421 126 SAEE 129 (177)
Q Consensus 126 ~~~e 129 (177)
+..|
T Consensus 114 ~~~E 117 (140)
T PF05099_consen 114 SPEE 117 (140)
T ss_dssp SCCH
T ss_pred CHHH
Confidence 5544
No 170
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=71.53 E-value=16 Score=26.01 Aligned_cols=114 Identities=14% Similarity=0.213 Sum_probs=65.3
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhC---CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccc-cch-h
Q 030421 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLG---KGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNR-VKK-N 108 (177)
Q Consensus 34 ~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~---~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~-~~~-~ 108 (177)
..++.++....-..+.|.|+..|+.+.++..- ...+++++.+....+..-+.| +....|-.....+...+ ... .
T Consensus 96 a~qi~e~c~~~~~~~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~g-~~l~~~~sg~~vv~s~~~~e~~~ 174 (223)
T PF04157_consen 96 AVQIAEVCLATRSKNGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLGLG-FRLRKFGSGVKVVQSVPYSELSK 174 (223)
T ss_dssp HHHHHHHHHHHCCTTTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTSS-EEEEEETTTEEEEECST-CHH-H
T ss_pred HHHHHHHHHHHHhcCCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCCC-eEEEEeCCCcEEEEeCCchhhhH
Confidence 34666777766667788999999999887742 245777777777777665554 33222221111111111 111 3
Q ss_pred HHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 030421 109 DIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGV 153 (177)
Q Consensus 109 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 153 (177)
....+.........|.+|..++..-+. ++...+.+.+..+
T Consensus 175 ~~~~il~~~~~~~~g~vt~~~l~~~~~-----ws~~~a~~~L~~~ 214 (223)
T PF04157_consen 175 DQSRILELAEEENGGGVTASELAEKLG-----WSVERAKEALEEL 214 (223)
T ss_dssp HHHHHHHHH--TTTSEEEHHHHHHHHT-----B-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHhC-----CCHHHHHHHHHHH
Confidence 345555555345668999999877763 6666666665554
No 171
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=71.24 E-value=12 Score=34.68 Aligned_cols=71 Identities=10% Similarity=0.159 Sum_probs=52.4
Q ss_pred cCCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCC----HHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 28 RASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGIS----KAEMAKSFRFIDTDKDGYIDFKEFIEMMHD 99 (177)
Q Consensus 28 ~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 99 (177)
.+++.+.+...++|+++|++..|+|+..++..+++.+..++. ... +.+-..+....++.|++.+-+..+..
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 678899999999999999999999999999999998754332 111 22222233445678888888777654
No 172
>PRK01844 hypothetical protein; Provisional
Probab=69.50 E-value=19 Score=20.69 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=33.6
Q ss_pred HHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 030421 111 QGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGV 153 (177)
Q Consensus 111 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 153 (177)
+..|+.+= .++-.|+.+-++.++..+|...|+..+..+++.+
T Consensus 26 rk~~~k~l-k~NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 26 RKYMMNYL-QKNPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred HHHHHHHH-HHCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 44454442 3345799999999999999999999999998877
No 173
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=69.15 E-value=15 Score=20.34 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=26.2
Q ss_pred CcccHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q 030421 50 GKISQDEYNSALSVLGKGISKAEMAKSFRFI 80 (177)
Q Consensus 50 g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~ 80 (177)
..+|.+|+...+..++..++..++-.+|..+
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 4688899999999998888888888888765
No 174
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=68.94 E-value=10 Score=21.25 Aligned_cols=20 Identities=25% Similarity=0.559 Sum_probs=12.3
Q ss_pred hhccCCCCccCHHHHHHHHH
Q 030421 116 LFDLNGDKKISAEELMEVLR 135 (177)
Q Consensus 116 ~~D~~~~g~i~~~e~~~~l~ 135 (177)
.||...+.+||.+++.+++.
T Consensus 11 LYDT~~s~YiTL~di~~lV~ 30 (64)
T PF07879_consen 11 LYDTETSSYITLEDIAQLVR 30 (64)
T ss_pred cccCCCceeEeHHHHHHHHH
Confidence 45666666666666666664
No 175
>PLN02230 phosphoinositide phospholipase C 4
Probab=68.58 E-value=33 Score=28.52 Aligned_cols=28 Identities=18% Similarity=0.516 Sum_probs=13.5
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 030421 36 EMRQVFDKFDTNKDGKISQDEYNSALSVL 64 (177)
Q Consensus 36 ~l~~~f~~~d~~~~g~l~~~e~~~~l~~l 64 (177)
++..+|..+..+ .+.++.++|...|..-
T Consensus 30 ei~~lf~~~s~~-~~~mt~~~l~~FL~~~ 57 (598)
T PLN02230 30 DVRDLFEKYADG-DAHMSPEQLQKLMAEE 57 (598)
T ss_pred HHHHHHHHHhCC-CCccCHHHHHHHHHHh
Confidence 444445554322 2455555555555443
No 176
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=68.43 E-value=45 Score=24.59 Aligned_cols=100 Identities=12% Similarity=0.129 Sum_probs=56.6
Q ss_pred CCCcccHHHHHHHHHhhC--CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHH----HHHHHhhccCC
Q 030421 48 KDGKISQDEYNSALSVLG--KGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDI----QGAFQLFDLNG 121 (177)
Q Consensus 48 ~~g~l~~~e~~~~l~~l~--~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~----~~~f~~~D~~~ 121 (177)
-||.|+..|+. +...+- +.++.+.-+.....+........++++|+..+..... ...+.+ ..+|.+.= -
T Consensus 68 ADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~--~r~~l~~~lL~~l~~vA~--A 142 (267)
T PRK09430 68 AKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCG--GRFDLLRMFLEIQIQAAF--A 142 (267)
T ss_pred cCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHH--h
Confidence 58999999997 333331 4556666333444444444455889999988865332 222232 44455543 3
Q ss_pred CCccCHHHHHHHHHHhC--CCCCHHHHHHHHHhh
Q 030421 122 DKKISAEELMEVLRKMG--EKYSLDSCRKMIRGV 153 (177)
Q Consensus 122 ~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~ 153 (177)
||.++..|- .+|..+. ..++..+...+...+
T Consensus 143 DG~l~~~E~-~~L~~Ia~~Lgis~~df~~~~~~~ 175 (267)
T PRK09430 143 DGSLHPNER-QVLYVIAEELGFSRFQFDQLLRMM 175 (267)
T ss_pred cCCCCHHHH-HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 477888774 3333331 246666666665543
No 177
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=67.91 E-value=29 Score=26.02 Aligned_cols=88 Identities=8% Similarity=0.033 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhcC--CCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHH
Q 030421 34 VQEMRQVFDKFDT--NKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQ 111 (177)
Q Consensus 34 ~~~l~~~f~~~d~--~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 111 (177)
+.++...|..... ..--..+..+-.+.....+.......+..-+..+|++.+..+.=+=|..++..-....+.+.+|+
T Consensus 40 vA~~~~~~~~~~d~p~~~p~~t~~e~~er~~~~k~e~~~~~~~~~l~~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLr 119 (335)
T KOG0113|consen 40 VAQYLSTFEDPKDAPPKFPVETPEEPLERGRREKTEKIPHKLERRLKLWDPNNDPNAIGDPYKTLFVARLNYDTSESKLR 119 (335)
T ss_pred HHHHHHhhcCcccCCCcCcccchhhHHHhhhhhhhhhhHHHHHHHHHhcCCCCCCcccCCccceeeeeeccccccHHHHH
Confidence 4455555554322 12223444444444444444444445666677788888766665777777765556667888999
Q ss_pred HHHHhhccCC
Q 030421 112 GAFQLFDLNG 121 (177)
Q Consensus 112 ~~f~~~D~~~ 121 (177)
..|..|..-+
T Consensus 120 reF~~YG~Ik 129 (335)
T KOG0113|consen 120 REFEKYGPIK 129 (335)
T ss_pred HHHHhcCcce
Confidence 9999985443
No 178
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=67.09 E-value=35 Score=22.81 Aligned_cols=48 Identities=15% Similarity=0.284 Sum_probs=19.7
Q ss_pred cccHHHHHHHHHhhC----CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 030421 51 KISQDEYNSALSVLG----KGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMH 98 (177)
Q Consensus 51 ~l~~~e~~~~l~~l~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 98 (177)
.++...|..++...+ ...+..+....|..+.-..-+.++|++|...+.
T Consensus 33 em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ 84 (180)
T KOG4070|consen 33 EMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALE 84 (180)
T ss_pred ccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHH
Confidence 345555555554432 222333333334333333333455555544443
No 179
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=66.27 E-value=14 Score=22.63 Aligned_cols=80 Identities=13% Similarity=0.184 Sum_probs=39.3
Q ss_pred CCCcccHHHHHHHHHhhC--C---CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCC
Q 030421 48 KDGKISQDEYNSALSVLG--K---GISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGD 122 (177)
Q Consensus 48 ~~g~l~~~e~~~~l~~l~--~---~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~ 122 (177)
-||.++.+|...+.+.+. . ......+..++...-..- ...+..++...+............+..++.... -|
T Consensus 15 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ia~--aD 91 (111)
T cd07176 15 ADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLLPPELRETAFAVAVDIAA--AD 91 (111)
T ss_pred hccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--cc
Confidence 377888888877766653 1 233444555554332210 023345565555543322222233444455554 33
Q ss_pred CccCHHHH
Q 030421 123 KKISAEEL 130 (177)
Q Consensus 123 g~i~~~e~ 130 (177)
|.++..|-
T Consensus 92 G~~~~~E~ 99 (111)
T cd07176 92 GEVDPEER 99 (111)
T ss_pred CCCCHHHH
Confidence 66766554
No 180
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=66.16 E-value=13 Score=28.27 Aligned_cols=62 Identities=13% Similarity=0.070 Sum_probs=43.5
Q ss_pred HHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc
Q 030421 112 GAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRNV 174 (177)
Q Consensus 112 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~~ 174 (177)
.....+|..+.|.+++--.+..|..+...--.+..+.+|..+ .|..|.+.+..|..+++...
T Consensus 114 flLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~i-sds~gim~~i~~~~fl~evl 175 (434)
T KOG4301|consen 114 FLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLI-SDSRGIMQEIQRDQFLHEVL 175 (434)
T ss_pred HHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHHH
Confidence 344668888999999888888887764333356777888777 56678777777766666543
No 181
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=65.45 E-value=8.2 Score=22.71 Aligned_cols=32 Identities=6% Similarity=0.160 Sum_probs=18.2
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 030421 121 GDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVD 154 (177)
Q Consensus 121 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 154 (177)
+.|+||++|+..+|.... ++.+.++.++..+.
T Consensus 18 ~~G~lT~~eI~~~L~~~~--~~~e~id~i~~~L~ 49 (82)
T PF03979_consen 18 KKGYLTYDEINDALPEDD--LDPEQIDEIYDTLE 49 (82)
T ss_dssp HHSS-BHHHHHHH-S-S-----HHHHHHHHHHHH
T ss_pred hcCcCCHHHHHHHcCccC--CCHHHHHHHHHHHH
Confidence 457788877777776433 66777777777663
No 182
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=65.01 E-value=24 Score=20.08 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHh
Q 030421 127 AEELMEVLRKMGEKYSLDSCRKMIRG 152 (177)
Q Consensus 127 ~~e~~~~l~~~~~~~~~~~~~~~~~~ 152 (177)
-+++..++...|..+++.++..+++.
T Consensus 16 d~~m~~if~l~~~~vs~~el~a~lrk 41 (68)
T PF07308_consen 16 DDDMIEIFALAGFEVSKAELSAWLRK 41 (68)
T ss_pred hHHHHHHHHHcCCccCHHHHHHHHCC
Confidence 34556666666666666666666655
No 183
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.55 E-value=7.1 Score=30.02 Aligned_cols=66 Identities=17% Similarity=0.329 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHH-HhhcCCCCCcccHHHHHHHHHh
Q 030421 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSF-RFIDTDKDGYIDFKEFIEMMHD 99 (177)
Q Consensus 34 ~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~-~~~d~~~~g~i~~~ef~~~~~~ 99 (177)
-.+++++|...|+.+.|+|+.+-+..++..++...++...--+. ..+++..-|.|-.++|+..+..
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~p 374 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFFP 374 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccccC
Confidence 45889999999999999999999999999988555554433333 4567777777777777776654
No 184
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=64.47 E-value=24 Score=20.03 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 030421 54 QDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMH 98 (177)
Q Consensus 54 ~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 98 (177)
-+++..++..-|..++..++..+++.-+..+-..++=+.+..++.
T Consensus 16 d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~ 60 (68)
T PF07308_consen 16 DDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLN 60 (68)
T ss_pred hHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHH
Confidence 355667777777777777777777654443333344344444433
No 185
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=63.88 E-value=24 Score=27.29 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=40.7
Q ss_pred CCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHh
Q 030421 85 DGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM 137 (177)
Q Consensus 85 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 137 (177)
+..++++++...... .......+..+.++...|.+++|.....++.+++...
T Consensus 72 ~~~~~l~k~~~~~~~-~~~gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~v 123 (427)
T KOG2557|consen 72 DDKMTLEKLVIAKAT-YEKGTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVVV 123 (427)
T ss_pred CccchHHHHhhHHhh-hccCcccHHHHHHHHHHhhccccccchhHHHHHHHHH
Confidence 346888887776553 4444566788999999999999999999998888764
No 186
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=63.51 E-value=18 Score=23.77 Aligned_cols=49 Identities=16% Similarity=0.335 Sum_probs=37.9
Q ss_pred CCCccCHHHHHHHHHHhC---------CCCCHHHHHHHHHhhcCCCCC-cccHHHHHHH
Q 030421 121 GDKKISAEELMEVLRKMG---------EKYSLDSCRKMIRGVDADGDG-LIDMDEFMTM 169 (177)
Q Consensus 121 ~~g~i~~~e~~~~l~~~~---------~~~~~~~~~~~~~~~d~~~~g-~is~~ef~~~ 169 (177)
++..||.+||.+++..-. ..+++++++.+.+.+.....+ .++..|-+..
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 567899999999998642 356789999999988776555 4898887764
No 187
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.07 E-value=41 Score=22.23 Aligned_cols=93 Identities=18% Similarity=0.240 Sum_probs=60.1
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhh--CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHHHHHh
Q 030421 39 QVFDKFDTNKDGKISQDEYNSALSVL--GKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQL 116 (177)
Q Consensus 39 ~~f~~~d~~~~g~l~~~e~~~~l~~l--~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~ 116 (177)
-.|.... -||.++..|...+...+ .+.++...+..+......-+...+++..|...+..........+-+..+|+.
T Consensus 34 Llf~Vm~--ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mweI 111 (148)
T COG4103 34 LLFHVME--ADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLELIGLMWEI 111 (148)
T ss_pred HHHHHHh--cccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4555554 46778888765543332 3677888888888877666667788888888877443333334556777777
Q ss_pred hccCCCCccCHHHHHHHHH
Q 030421 117 FDLNGDKKISAEELMEVLR 135 (177)
Q Consensus 117 ~D~~~~g~i~~~e~~~~l~ 135 (177)
.- .||.++.-|-..+-+
T Consensus 112 a~--ADg~l~e~Ed~vi~R 128 (148)
T COG4103 112 AY--ADGELDESEDHVIWR 128 (148)
T ss_pred HH--ccccccHHHHHHHHH
Confidence 64 457777776544443
No 188
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=62.01 E-value=27 Score=26.76 Aligned_cols=44 Identities=16% Similarity=0.382 Sum_probs=28.3
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 030421 121 GDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170 (177)
Q Consensus 121 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l 170 (177)
..|.||++|-...++......+++.++.+++.++ ||-+||...+
T Consensus 299 R~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 299 RSGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred HcCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 3577777777777777655555666777766653 4566666543
No 189
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.87 E-value=37 Score=22.43 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=11.6
Q ss_pred hHHHHHHHhhccCCCCccCHHHHHHHHH
Q 030421 108 NDIQGAFQLFDLNGDKKISAEELMEVLR 135 (177)
Q Consensus 108 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~ 135 (177)
..+..+......-+...++.-.|...|+
T Consensus 66 ~~l~ali~~~e~~~~Ea~d~y~fts~l~ 93 (148)
T COG4103 66 EELDALIEAGEEAGYEAIDLYSFTSVLK 93 (148)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344443333333333444444444444
No 190
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=61.69 E-value=38 Score=21.40 Aligned_cols=42 Identities=17% Similarity=0.318 Sum_probs=35.7
Q ss_pred HHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 030421 112 GAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGV 153 (177)
Q Consensus 112 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 153 (177)
.+|-.+-..++..+|.+++..+|+..|.......+..+++.+
T Consensus 7 aAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L 48 (112)
T PTZ00373 7 AAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSL 48 (112)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 456666667777899999999999999999999999988887
No 191
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=61.62 E-value=18 Score=20.29 Aligned_cols=37 Identities=32% Similarity=0.581 Sum_probs=29.5
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCC
Q 030421 121 GDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADG 157 (177)
Q Consensus 121 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 157 (177)
.++.++..++...|...|..++++.+...++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 4467888888888888888888888888888876554
No 192
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=61.18 E-value=2.9 Score=29.16 Aligned_cols=55 Identities=22% Similarity=0.241 Sum_probs=36.0
Q ss_pred HHhhcc-CCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 030421 114 FQLFDL-NGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMM 170 (177)
Q Consensus 114 f~~~D~-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l 170 (177)
|-.+|. ..+|+++..|+.-+-..+- .-+.-+..+|...|-|+||.|+.+||...+
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap~i--pme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAPLI--PMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eccccCCCccccccccccccccCCcc--cHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 334454 4788888888744332221 113345667888899999999999987765
No 193
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=60.53 E-value=22 Score=18.19 Aligned_cols=29 Identities=28% Similarity=0.404 Sum_probs=18.6
Q ss_pred HHHHHHHhhc--cCCCCccCHHHHHHHHHHh
Q 030421 109 DIQGAFQLFD--LNGDKKISAEELMEVLRKM 137 (177)
Q Consensus 109 ~~~~~f~~~D--~~~~g~i~~~e~~~~l~~~ 137 (177)
.+..+|..|. ......++..||+.++..-
T Consensus 7 ~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~E 37 (44)
T PF01023_consen 7 TIIDVFHKYAGKEGDKDTLSKKELKELLEKE 37 (44)
T ss_dssp HHHHHHHHHHTSSSSTTSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCeEcHHHHHHHHHHH
Confidence 4556666664 1345668888888888654
No 194
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=58.66 E-value=33 Score=19.70 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=8.0
Q ss_pred HHHHhhCCCCCHHHHHHHH
Q 030421 59 SALSVLGKGISKAEMAKSF 77 (177)
Q Consensus 59 ~~l~~l~~~~~~~~~~~~~ 77 (177)
.++..+..+-+.+.++.-|
T Consensus 4 ~ii~~Lh~G~~~e~vk~~F 22 (71)
T PF04282_consen 4 EIIKRLHEGEDPEEVKEEF 22 (71)
T ss_pred HHHHHHhCCCCHHHHHHHH
Confidence 3344443334444444444
No 195
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.31 E-value=72 Score=23.48 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=47.8
Q ss_pred chHHHHHHHHHhh-cCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcc
Q 030421 32 SNVQEMRQVFDKF-DTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMG 101 (177)
Q Consensus 32 ~~~~~l~~~f~~~-d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 101 (177)
.....+.++|..+ |+..+..|-.+-+..++..+|..+..-.+.-+--.+....-+..+.++|+..+..+.
T Consensus 61 ~s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l~ 131 (260)
T KOG3077|consen 61 VSEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTALG 131 (260)
T ss_pred ccHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHcC
Confidence 3445666777665 555556888888999999998766543333333334566678899999999887544
No 196
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=57.18 E-value=34 Score=27.53 Aligned_cols=60 Identities=12% Similarity=0.217 Sum_probs=31.4
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHHHHHhh---cc-----CCCCccCHHHHHHHH
Q 030421 74 AKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLF---DL-----NGDKKISAEELMEVL 134 (177)
Q Consensus 74 ~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~---D~-----~~~g~i~~~e~~~~l 134 (177)
..+|..+...+.+.+.+-.|+..+...... .++.+++.++..+ |. ..-+.++++.|+.++
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkstGLr-tsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI 156 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKSTGLR-TSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCI 156 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHcCCC-cCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhh
Confidence 345555545555667777777776654333 3344555555332 21 122346666666555
No 197
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=56.50 E-value=41 Score=20.09 Aligned_cols=48 Identities=17% Similarity=0.150 Sum_probs=20.0
Q ss_pred cccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHHHHHHHHH
Q 030421 87 YIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLR 135 (177)
Q Consensus 87 ~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~ 135 (177)
-|.|.+|...+......... .....+=..+|.-.+|+|+.=||--+.+
T Consensus 22 IVPW~~F~~~L~~~h~~~~~-~~~~aLk~TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 22 IVPWSEFRQALQKVHPISSG-LEAMALKSTIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp EEEHHHHHHHHHHHS--SSH-HHHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred EeeHHHHHHHHHHhcCCCch-HHHHHHHHHHhcccCCccchhhhHHHHH
Confidence 35555555555443322221 1222233344555555555555544443
No 198
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=55.72 E-value=46 Score=20.41 Aligned_cols=29 Identities=17% Similarity=0.354 Sum_probs=12.6
Q ss_pred ccHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q 030421 52 ISQDEYNSALSVLGKGISKAEMAKSFRFI 80 (177)
Q Consensus 52 l~~~e~~~~l~~l~~~~~~~~~~~~~~~~ 80 (177)
++..+..-++..+...++++++..+...+
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L 48 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAEL 48 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHH
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHH
Confidence 44444444444444444555444444433
No 199
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=55.61 E-value=5.6 Score=27.78 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=48.5
Q ss_pred ccHHHHHHHHHhhCCCCCHHH-HHHH--HHhhcCC-CCCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCH
Q 030421 52 ISQDEYNSALSVLGKGISKAE-MAKS--FRFIDTD-KDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISA 127 (177)
Q Consensus 52 l~~~e~~~~l~~l~~~~~~~~-~~~~--~~~~d~~-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~ 127 (177)
++..+....+...|..-.+.. .--+ |-.+|.. .+|+++-.|+.-+-..+. ..+..+...|+..|.|++|.|..
T Consensus 165 l~~~~~~e~~~ea~~~d~~k~i~pv~wqf~qld~~p~d~~~sh~el~pl~ap~i---pme~c~~~f~e~cd~~nd~~ial 241 (259)
T KOG4004|consen 165 LTEKHENEKRLEAGDHDFEKYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLI---PMEHCTTRFFETCDLDNDKYIAL 241 (259)
T ss_pred HHHHHHHHHHhhcccccccceeeeeeeeeccccCCCccccccccccccccCCcc---cHHhhchhhhhcccCCCCCceeH
Confidence 555556555555543222222 2222 2334443 378888888776644321 22346778899999999999999
Q ss_pred HHHHHHH
Q 030421 128 EELMEVL 134 (177)
Q Consensus 128 ~e~~~~l 134 (177)
+|+-..+
T Consensus 242 ~ew~~c~ 248 (259)
T KOG4004|consen 242 DEWAGCF 248 (259)
T ss_pred HHhhccc
Confidence 9887665
No 200
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=54.94 E-value=46 Score=20.16 Aligned_cols=82 Identities=17% Similarity=0.291 Sum_probs=42.4
Q ss_pred CCCcccHHHHHHHHHhhC-CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhcc--ccccchhHHHHHHHhhccCCCCc
Q 030421 48 KDGKISQDEYNSALSVLG-KGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMG--DNRVKKNDIQGAFQLFDLNGDKK 124 (177)
Q Consensus 48 ~~g~l~~~e~~~~l~~l~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~--~~~~~~~~~~~~f~~~D~~~~g~ 124 (177)
-||.++..|...+-..+. ...+......+...+........++.+|...+.... ........+..+|...-- ||.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA~A--DG~ 89 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRACGGRPELLLQLLEFLFQIAYA--DGE 89 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--cCC
Confidence 378888888765544432 233333344444433322222366777777776422 111223345566666543 477
Q ss_pred cCHHHHH
Q 030421 125 ISAEELM 131 (177)
Q Consensus 125 i~~~e~~ 131 (177)
++..|-.
T Consensus 90 ~~~~E~~ 96 (106)
T cd07316 90 LSEAERE 96 (106)
T ss_pred CCHHHHH
Confidence 8777654
No 201
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=53.56 E-value=54 Score=20.60 Aligned_cols=56 Identities=21% Similarity=0.357 Sum_probs=42.2
Q ss_pred HHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 112 GAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172 (177)
Q Consensus 112 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 172 (177)
.+|-.+-..++..+|.+++..+|+..|.......+..+++.+.. .+.++.+..-..
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa~g~~ 60 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIAAGKE 60 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHHhHh
Confidence 35566666777889999999999999999998888888887732 255666654433
No 202
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=53.35 E-value=27 Score=28.08 Aligned_cols=84 Identities=18% Similarity=0.192 Sum_probs=49.0
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCC-cccHHHHHHHHHhccccccchhHHHHHH
Q 030421 36 EMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDG-YIDFKEFIEMMHDMGDNRVKKNDIQGAF 114 (177)
Q Consensus 36 ~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g-~i~~~ef~~~~~~~~~~~~~~~~~~~~f 114 (177)
..-.+|..+-+.+...++..|++.++..+|......+--+.|.. +.++. .+.|..|+..+. ..-.+++.++..|
T Consensus 486 ~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~--~a~s~~gv~yl~v~~~i~---sel~D~d~v~~~~ 560 (612)
T COG5069 486 SNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGD--PAGSVSGVFYLDVLKGIH---SELVDYDLVTRGF 560 (612)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccC--CccccccchHHHHHHHHh---hhhcChhhhhhhH
Confidence 33445666655556679999999999999866554443344432 22221 355555555544 2234556677777
Q ss_pred HhhccCCCCc
Q 030421 115 QLFDLNGDKK 124 (177)
Q Consensus 115 ~~~D~~~~g~ 124 (177)
..++.-.++.
T Consensus 561 ~~f~diad~r 570 (612)
T COG5069 561 TEFDDIADAR 570 (612)
T ss_pred HHHHHhhhhh
Confidence 7775444443
No 203
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=52.96 E-value=45 Score=22.34 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=31.1
Q ss_pred HHHHHHHhhccCCCCccCHHHHHHHHHHhC-----CCCCHHHHHHHHHhhcCC
Q 030421 109 DIQGAFQLFDLNGDKKISAEELMEVLRKMG-----EKYSLDSCRKMIRGVDAD 156 (177)
Q Consensus 109 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~d~~ 156 (177)
...-+|..+-..+-+.++.++|+.+|..++ ....+++++.|.+.+...
T Consensus 58 dt~i~fsKvkg~~~~~~tf~~fkkal~ela~~R~k~Ks~ee~l~~I~~llagk 110 (180)
T KOG4070|consen 58 DTDIVFSKVKGKKARTITFEEFKKALEELATKRFKGKSKEEALDAICQLLAGK 110 (180)
T ss_pred ccceeeeeccccccccccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhcc
Confidence 344556566556667888888888887764 244566677776666443
No 204
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=52.24 E-value=1.1e+02 Score=26.39 Aligned_cols=104 Identities=10% Similarity=0.111 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHhhcCCCCC-cccHHHHHHHHHhcccc-----------c-cchhHHHHHHHhhccCCCCccCHHHHHHHH
Q 030421 68 ISKAEMAKSFRFIDTDKDG-YIDFKEFIEMMHDMGDN-----------R-VKKNDIQGAFQLFDLNGDKKISAEELMEVL 134 (177)
Q Consensus 68 ~~~~~~~~~~~~~d~~~~g-~i~~~ef~~~~~~~~~~-----------~-~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 134 (177)
++...+..+|...+..+.. -++..+.+..+...+.. + .-+-.+..++..||...+|.|..-+|+.-+
T Consensus 417 v~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~ 496 (966)
T KOG4286|consen 417 LSLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGI 496 (966)
T ss_pred ccHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhH
Confidence 4555677778777665543 45556555555432110 0 012246778899999999999999999988
Q ss_pred HHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 135 RKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172 (177)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 172 (177)
..+..-..++....+|..+-.++ ..+....|--+|..
T Consensus 497 i~lck~~leek~~ylF~~vA~~~-sq~~q~~l~lLL~d 533 (966)
T KOG4286|consen 497 ISLCKAHLEDKYRYLFKQVASST-SQCDQRRLGLLLHD 533 (966)
T ss_pred HHHhcchhHHHHHHHHHHHcCch-hhHHHHHHHHHHHH
Confidence 88766667788889999884433 33434455554443
No 205
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=51.59 E-value=1.2e+02 Score=23.97 Aligned_cols=81 Identities=15% Similarity=0.132 Sum_probs=39.5
Q ss_pred CcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHH---HHHHHHHhccccccchhHHHHHHHhhccCCCCc--
Q 030421 50 GKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFK---EFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKK-- 124 (177)
Q Consensus 50 g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~---ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~-- 124 (177)
-.|+...|..+|.....-.+--+.-.+-..+|...++.|+-= -|..++. ....+.+-|+.+..-+-|+
T Consensus 189 ~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFq-------Pw~tllkNWq~LavtHPGYmA 261 (563)
T KOG1785|consen 189 TIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQ-------PWKTLLKNWQTLAVTHPGYMA 261 (563)
T ss_pred ccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhhc-------cHHHHHHhhhhhhccCCceeE
Confidence 356666666666553222222233333344555666665433 3333332 2234444555555555555
Q ss_pred -cCHHHHHHHHHHh
Q 030421 125 -ISAEELMEVLRKM 137 (177)
Q Consensus 125 -i~~~e~~~~l~~~ 137 (177)
+|++|.+.-|..+
T Consensus 262 FLTYDEVk~RLqk~ 275 (563)
T KOG1785|consen 262 FLTYDEVKARLQKY 275 (563)
T ss_pred EeeHHHHHHHHHHH
Confidence 5666666666543
No 206
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=51.30 E-value=61 Score=20.53 Aligned_cols=42 Identities=29% Similarity=0.384 Sum_probs=33.7
Q ss_pred HHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhc
Q 030421 113 AFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVD 154 (177)
Q Consensus 113 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 154 (177)
+|-..-..++..+|.+++..+|+..|.......+..+++.+.
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~ 47 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK 47 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 444555566777999999999999999888888888888773
No 207
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=50.75 E-value=35 Score=23.65 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=23.2
Q ss_pred cCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q 030421 45 DTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFI 80 (177)
Q Consensus 45 d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~ 80 (177)
..+.+|++..+++...+..-+..++.+++..+...-
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~ 61 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETD 61 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhC
Confidence 456789999999998888767778888998888754
No 208
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=49.98 E-value=68 Score=20.66 Aligned_cols=14 Identities=7% Similarity=0.294 Sum_probs=7.4
Q ss_pred ccCHHHHHHHHHHh
Q 030421 124 KISAEELMEVLRKM 137 (177)
Q Consensus 124 ~i~~~e~~~~l~~~ 137 (177)
.+|..+|..++...
T Consensus 67 ~LT~~Qi~Yl~~~~ 80 (122)
T PF06648_consen 67 KLTRSQIDYLYNRV 80 (122)
T ss_pred hcCHHHHHHHHHHH
Confidence 35555555555544
No 209
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=49.38 E-value=64 Score=23.59 Aligned_cols=61 Identities=8% Similarity=0.213 Sum_probs=35.8
Q ss_pred CCcccHHHHHHHHHhccccccchhHHHHHHHhhccC---CCCccCHHHHHHHHHHhCCCCCHHHHHHH
Q 030421 85 DGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLN---GDKKISAEELMEVLRKMGEKYSLDSCRKM 149 (177)
Q Consensus 85 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~---~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 149 (177)
.|-|++++.+..+..-.....++++... .+..... =.+.-..++|. ..+|.++++++++.+
T Consensus 176 sGLVTIEDiLEqIVGdIEDE~Deee~~d-I~~ls~~~~~VrALT~IedFN---e~F~t~FsDeevDTI 239 (293)
T COG4535 176 SGLVTIEDILEQIVGDIEDEYDEEEDAD-IRQLSRHTWRVRALTEIEDFN---EAFGTHFSDEEVDTI 239 (293)
T ss_pred eeeEEHHHHHHHHhcccccccchhhhhh-hHhhcCCceEEEecccHHHHH---HHhcCCCChhhhhhh
Confidence 5778999999988765555555554444 2222111 11223334444 445778888888765
No 210
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=48.49 E-value=68 Score=20.29 Aligned_cols=53 Identities=11% Similarity=0.142 Sum_probs=38.7
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHH
Q 030421 38 RQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIE 95 (177)
Q Consensus 38 ~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 95 (177)
...|-.+...++..++.+++..+|...|.......+..+++.+. ..+.++++.
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~-----GKdI~ELIa 58 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE-----GKTPHELIA 58 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHH
Confidence 34455555556667999999999999998888888888887772 245566655
No 211
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=48.30 E-value=39 Score=17.40 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=25.3
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 030421 128 EELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTM 169 (177)
Q Consensus 128 ~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~ 169 (177)
+|....|..+| +++.++..++..+.. ...++.++.+..
T Consensus 4 ~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik~ 41 (47)
T PF07499_consen 4 EDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIKQ 41 (47)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHHH
Confidence 56777888888 778888888888865 334566665543
No 212
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=47.46 E-value=89 Score=21.30 Aligned_cols=53 Identities=11% Similarity=0.267 Sum_probs=25.5
Q ss_pred CcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHH
Q 030421 86 GYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRK 148 (177)
Q Consensus 86 g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~ 148 (177)
..|+.++++.++.....+......+...|+...++ .-..+|..+| ++++++..
T Consensus 114 ~~V~~~~w~~l~~~~g~~~~~m~~wh~~fe~~~p~--------~h~~~l~~~g--~~~~~~~~ 166 (172)
T cd04790 114 RLVTKEKWVAILKAAGMDEADMRRWHIEFEKMEPE--------AHQEFLQSLG--IPEDEIER 166 (172)
T ss_pred ccCCHHHHHHHHHHcCCChHHHHHHHHHHHHhCcH--------HHHHHHHHcC--CCHHHHHH
Confidence 34566666666654443333333444455444433 3344555555 44555444
No 213
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.87 E-value=50 Score=25.93 Aligned_cols=57 Identities=23% Similarity=0.424 Sum_probs=35.0
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 030421 37 MRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEM 96 (177)
Q Consensus 37 l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 96 (177)
.-++|..+.+. +|.|+-..-+..+-. ..++...+-++|...|.+.+|.++-+||.-.
T Consensus 446 yde~fy~l~p~-~gk~sg~~ak~~mv~--sklpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 446 YDEIFYTLSPV-NGKLSGRNAKKEMVK--SKLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred hHhhhhccccc-CceeccchhHHHHHh--ccCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 34456655443 566666555554432 3456666777777777777777777777544
No 214
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=46.27 E-value=35 Score=22.75 Aligned_cols=34 Identities=9% Similarity=0.301 Sum_probs=24.0
Q ss_pred cchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 030421 31 RSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVL 64 (177)
Q Consensus 31 ~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l 64 (177)
...+..+..-....|..+.+|+|.++++.++..+
T Consensus 65 ~~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 65 MTQLQQLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred HHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 3445566666677777777888888888777553
No 215
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=45.82 E-value=31 Score=19.12 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=17.8
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHH
Q 030421 124 KISAEELMEVLRKMGEKYSLDSCRKM 149 (177)
Q Consensus 124 ~i~~~e~~~~l~~~~~~~~~~~~~~~ 149 (177)
.|+.++|..+|+......+.+++...
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 37778888888777777777766554
No 216
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=45.70 E-value=42 Score=23.26 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=15.8
Q ss_pred cCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 030421 119 LNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRG 152 (177)
Q Consensus 119 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 152 (177)
.+.+|.+..+|+...+..-+..++.+++.+++..
T Consensus 27 ~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~ 60 (186)
T PF01885_consen 27 MDPDGWVSVDDLLRALRFKGLWVTEEDIREVVET 60 (186)
T ss_dssp --TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH
T ss_pred cCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhh
Confidence 4455666666666666555555556666665543
No 217
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=45.48 E-value=64 Score=19.12 Aligned_cols=79 Identities=14% Similarity=0.255 Sum_probs=36.8
Q ss_pred CCcccHHHHHHHHHhhCC--CCCH---HHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCC
Q 030421 49 DGKISQDEYNSALSVLGK--GISK---AEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDK 123 (177)
Q Consensus 49 ~g~l~~~e~~~~l~~l~~--~~~~---~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g 123 (177)
||.|+.+|...+...+.. .++. ..+..++...-.. ..+...+................+..++.... .||
T Consensus 13 DG~i~~~E~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~r~~~l~~~~~ia~--aDG 87 (104)
T cd07177 13 DGRVDEEEIAAIEALLRRLPLLDAEERAELIALLEEPLAE---AGDLAALAALLKELPDAELREALLAALWEVAL--ADG 87 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--hcc
Confidence 788888887766555431 1123 3333344332221 22344454444432221222234455555554 346
Q ss_pred ccCHHHHHH
Q 030421 124 KISAEELME 132 (177)
Q Consensus 124 ~i~~~e~~~ 132 (177)
.++..|...
T Consensus 88 ~~~~~E~~~ 96 (104)
T cd07177 88 ELDPEERAL 96 (104)
T ss_pred CCCHHHHHH
Confidence 677666543
No 218
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=45.21 E-value=89 Score=20.70 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=11.4
Q ss_pred CCCCCcccHHHHHHH
Q 030421 155 ADGDGLIDMDEFMTM 169 (177)
Q Consensus 155 ~~~~g~is~~ef~~~ 169 (177)
.+.+|..+...|.++
T Consensus 130 ~~~tG~Fd~~~l~~f 144 (145)
T PF13623_consen 130 NPQTGQFDRAKLKQF 144 (145)
T ss_pred CcccCCcCHHHHHhh
Confidence 467888888877765
No 219
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=44.33 E-value=24 Score=21.79 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=25.1
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHH---HHHHHhhcCCCCCcccHHHHHHHHHhhcc
Q 030421 124 KISAEELMEVLRKMGEKYSLDSC---RKMIRGVDADGDGLIDMDEFMTMMTRNVK 175 (177)
Q Consensus 124 ~i~~~e~~~~l~~~~~~~~~~~~---~~~~~~~d~~~~g~is~~ef~~~l~~~~~ 175 (177)
.++.+|+..++...|. .+-+ ...++....+....++.++.+..|..++.
T Consensus 35 p~s~~eL~~~l~~~g~---~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p~ 86 (105)
T cd03035 35 GLDAATLERWLAKVGW---ETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHPS 86 (105)
T ss_pred CCCHHHHHHHHHHhCh---HHHHccCchHHHhCChhhhccCCHHHHHHHHHhCcC
Confidence 4677777777766651 1111 12233332222134566777777766654
No 220
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=43.47 E-value=69 Score=22.13 Aligned_cols=36 Identities=14% Similarity=0.107 Sum_probs=28.1
Q ss_pred cCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q 030421 45 DTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFI 80 (177)
Q Consensus 45 d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~ 80 (177)
..+.+|.++.+++...++.-+...+.+++..+...-
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d 62 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYKWVTRELLEAVVESD 62 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcC
Confidence 346789999999998887655668888888887643
No 221
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=43.24 E-value=99 Score=20.66 Aligned_cols=71 Identities=14% Similarity=0.281 Sum_probs=39.6
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHh-----CCCCCHHHHH
Q 030421 73 MAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM-----GEKYSLDSCR 147 (177)
Q Consensus 73 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-----~~~~~~~~~~ 147 (177)
+..++..-+.+.++.|++..|..+++.-.+ +.+...|- .+...++.++++.+|..+ .+....++-+
T Consensus 85 Lehllg~~~~~~n~~i~~~~ff~~lQ~~lG-----dWIT~~~L----kh~n~MSk~Qik~L~~~Ii~~akae~~dtE~Ye 155 (175)
T PF04876_consen 85 LEHLLGGEDDSTNGLIDIGKFFDILQPKLG-----DWITKNFL----KHPNRMSKDQIKTLCEQIIEMAKAESSDTEHYE 155 (175)
T ss_pred HHHHhcCCcCCcccceeHHHHHHHHHHHhh-----hHHHHHHH----hccchhhHHHHHHHHHHHHHHHhccCCchHHHH
Confidence 444444334445678999999988874211 22333332 334568888888888654 2233444444
Q ss_pred HHHHh
Q 030421 148 KMIRG 152 (177)
Q Consensus 148 ~~~~~ 152 (177)
.+++.
T Consensus 156 ~vwkK 160 (175)
T PF04876_consen 156 KVWKK 160 (175)
T ss_pred HHHHH
Confidence 44443
No 222
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=42.85 E-value=64 Score=22.28 Aligned_cols=17 Identities=29% Similarity=0.749 Sum_probs=9.9
Q ss_pred CCCCCcccHHHHHHHHH
Q 030421 82 TDKDGYIDFKEFIEMMH 98 (177)
Q Consensus 82 ~~~~g~i~~~ef~~~~~ 98 (177)
.+.+|.+..++++..+.
T Consensus 28 ld~~G~v~v~~Ll~~~~ 44 (179)
T PRK00819 28 LDEEGWVDIDALIEALA 44 (179)
T ss_pred cCCCCCEEHHHHHHHHH
Confidence 44556666666666554
No 223
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=42.38 E-value=1.2e+02 Score=21.31 Aligned_cols=21 Identities=5% Similarity=0.314 Sum_probs=12.2
Q ss_pred HHhhccCCCCccCHHHHHHHH
Q 030421 114 FQLFDLNGDKKISAEELMEVL 134 (177)
Q Consensus 114 f~~~D~~~~g~i~~~e~~~~l 134 (177)
-..|..|+.|.|+...+..+.
T Consensus 125 ~~af~~dk~G~l~~~rIl~Lr 145 (195)
T PF11363_consen 125 NRAFQVDKEGNLNTSRILGLR 145 (195)
T ss_pred HHHHhcCCCCCcCHHHHHHHH
Confidence 345556666666666555444
No 224
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=41.44 E-value=96 Score=22.91 Aligned_cols=10 Identities=10% Similarity=0.182 Sum_probs=5.2
Q ss_pred CCcccHHHHH
Q 030421 85 DGYIDFKEFI 94 (177)
Q Consensus 85 ~g~i~~~ef~ 94 (177)
||.|+-.|..
T Consensus 69 DG~Vse~Ei~ 78 (267)
T PRK09430 69 KGRVTEADIR 78 (267)
T ss_pred CCCcCHHHHH
Confidence 4555555544
No 225
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=41.09 E-value=43 Score=19.31 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=21.3
Q ss_pred cCCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 28 RASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSV 63 (177)
Q Consensus 28 ~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~ 63 (177)
+.+.++...+...|... -..|.|..+||..++..
T Consensus 9 G~s~e~~~~~~~ql~Q~--~~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 9 GASAEEADGALIQLSQM--LASGKLRGEEINSLLEA 42 (75)
T ss_pred CCCHHHHHHHHHHHHHH--HHcCcccHHHHHHHHHH
Confidence 34445555444444433 25789999999888765
No 226
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=40.61 E-value=1.8e+02 Score=22.99 Aligned_cols=102 Identities=19% Similarity=0.211 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHH
Q 030421 68 ISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCR 147 (177)
Q Consensus 68 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~ 147 (177)
+++.+....|+.. -+...-|.|..|...+.......... +.-.+=..+|.-.+++|+.-||--+-+-+. .+ ..+-
T Consensus 172 iTKadA~~FWr~~-fg~k~ivPW~~F~q~L~~~Hpi~~gl-eAmaLktTIDLtcnd~iS~FEFDvFTRLFq-Pw--~tll 246 (563)
T KOG1785|consen 172 ITKADAAEFWRKH-FGKKTIVPWKTFRQALHKVHPISSGL-EAMALKTTIDLTCNDFISNFEFDVFTRLFQ-PW--KTLL 246 (563)
T ss_pred eccccHHHHHHHh-cCCcccccHHHHHHHHHhcCCCcchh-HHHHhhceeccccccceeeehhhhHHHhhc-cH--HHHH
Confidence 4455555555544 22344688999999887654333221 223334567889999999988865544332 21 2233
Q ss_pred HHHHhhcCCCCCc---ccHHHHHHHHHhhc
Q 030421 148 KMIRGVDADGDGL---IDMDEFMTMMTRNV 174 (177)
Q Consensus 148 ~~~~~~d~~~~g~---is~~ef~~~l~~~~ 174 (177)
.=|+.+-..+.|+ ++|+|-...|....
T Consensus 247 kNWq~LavtHPGYmAFLTYDEVk~RLqk~~ 276 (563)
T KOG1785|consen 247 KNWQTLAVTHPGYMAFLTYDEVKARLQKYI 276 (563)
T ss_pred HhhhhhhccCCceeEEeeHHHHHHHHHHHh
Confidence 3355555677776 78888887776654
No 227
>PLN02223 phosphoinositide phospholipase C
Probab=40.58 E-value=1.8e+02 Score=24.03 Aligned_cols=64 Identities=8% Similarity=0.043 Sum_probs=44.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhh---C--CCCCHHHHHHHHHhhcCC--------CCCcccHHHHHHHHHh
Q 030421 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVL---G--KGISKAEMAKSFRFIDTD--------KDGYIDFKEFIEMMHD 99 (177)
Q Consensus 35 ~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l---~--~~~~~~~~~~~~~~~d~~--------~~g~i~~~ef~~~~~~ 99 (177)
..+..+|..+. .+.|.++.+++..++.-+ . ...+.++++.++..+-.. ..+.++.+.|..++..
T Consensus 16 ~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 16 DLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 45667788773 567899999999888333 2 356677777777654222 2356999999999864
No 228
>PHA02105 hypothetical protein
Probab=40.39 E-value=64 Score=17.62 Aligned_cols=48 Identities=15% Similarity=0.233 Sum_probs=27.7
Q ss_pred cccHHHHHHHHHhhC---CCCCHHHHHHHHHhhcCCCC--CcccHHHHHHHHH
Q 030421 51 KISQDEYNSALSVLG---KGISKAEMAKSFRFIDTDKD--GYIDFKEFIEMMH 98 (177)
Q Consensus 51 ~l~~~e~~~~l~~l~---~~~~~~~~~~~~~~~d~~~~--g~i~~~ef~~~~~ 98 (177)
.++.+||..++..-. .++..+.+..+-..+..-+- -+++|+||-.++-
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p 56 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMP 56 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhccccc
Confidence 367778887776532 34444444444444444332 3578888877764
No 229
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=40.36 E-value=94 Score=19.54 Aligned_cols=55 Identities=13% Similarity=0.158 Sum_probs=39.9
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 030421 39 QVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMH 98 (177)
Q Consensus 39 ~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 98 (177)
..|-.+...++..+|.+++..+|...|.......+..+++.+.. .+.++++..-.
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa~g~ 59 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIAAGK 59 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHHhH
Confidence 34555555566689999999999999988888888888877622 55666666533
No 230
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=39.84 E-value=90 Score=19.16 Aligned_cols=68 Identities=6% Similarity=0.182 Sum_probs=45.3
Q ss_pred CCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHhh
Q 030421 85 DGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM-GEKYSLDSCRKMIRGV 153 (177)
Q Consensus 85 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~ 153 (177)
...|.-.+|.-++..+ .....++++..+-..+-..+...++..++..++... +...++++++.+-..+
T Consensus 17 P~GvP~~Dy~PLlALL-~r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV~~~L 85 (96)
T PF11829_consen 17 PEGVPPTDYVPLLALL-RRRLTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDELPTPEDIERVRARL 85 (96)
T ss_dssp TT-B-HHHHHHHHHHH-TTTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-HHHHHHHHHHH
T ss_pred CCCCCCCccHHHHHHh-cccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCcCHHHHHHHHHHH
Confidence 3347778888887743 444677788888877766666667888898888887 5567788887776554
No 231
>PF03732 Retrotrans_gag: Retrotransposon gag protein ; InterPro: IPR005162 Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Probab=39.79 E-value=77 Score=18.38 Aligned_cols=14 Identities=21% Similarity=0.605 Sum_probs=8.8
Q ss_pred cccHHHHHHHHHhc
Q 030421 87 YIDFKEFIEMMHDM 100 (177)
Q Consensus 87 ~i~~~ef~~~~~~~ 100 (177)
..+|++|...+...
T Consensus 26 ~~~W~~~~~~~~~~ 39 (96)
T PF03732_consen 26 FITWEEFKDAFRKR 39 (96)
T ss_pred CCCHHHHHHHHHHH
Confidence 45777777766543
No 232
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=39.45 E-value=40 Score=15.90 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=9.5
Q ss_pred CCccCHHHHHHHHHH
Q 030421 122 DKKISAEELMEVLRK 136 (177)
Q Consensus 122 ~g~i~~~e~~~~l~~ 136 (177)
.|.|+.+|+..+...
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 466677777666644
No 233
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=37.95 E-value=1.7e+02 Score=21.92 Aligned_cols=112 Identities=13% Similarity=0.190 Sum_probs=58.8
Q ss_pred HHHHHHHHhhCC---CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHHHHH-----hh-ccCCCCcc
Q 030421 55 DEYNSALSVLGK---GISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQ-----LF-DLNGDKKI 125 (177)
Q Consensus 55 ~e~~~~l~~l~~---~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~-----~~-D~~~~g~i 125 (177)
+++..+|..+.. .-....+..++......+.....|..+..++... ....+..+|. .. ....-+..
T Consensus 3 ~~~~~~l~~f~~~k~~~l~~~L~~il~~ia~tg~~~~~W~~lk~l~~~k-----l~~v~~e~~~~~p~~~~~~~~~~~~~ 77 (288)
T PF09184_consen 3 EELLDALENFMKIKSKELPPELEDILEHIAKTGETWYPWSLLKSLFRHK-----LEKVIDEFFESAPEESGPQNPNVEPE 77 (288)
T ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHH-----HHHHHHHHHhcCccccCCCCCCcchh
Confidence 455566555421 2223456677777777666667888888887742 2223344442 11 11222345
Q ss_pred CHHHHHHHHHHh-----CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhc
Q 030421 126 SAEELMEVLRKM-----GEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRNV 174 (177)
Q Consensus 126 ~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~~ 174 (177)
...+++..+..+ +.+++-..+.+|+- ++ ...+=.+..|+..|.+++
T Consensus 78 ~~~~~~~~~~~~~~~f~~~PfTiqRlcEl~~--~P-~~~y~~~~k~~~alek~~ 128 (288)
T PF09184_consen 78 DYEEMKERILELLDSFDEPPFTIQRLCELLL--DP-RKHYKTLDKFLRALEKVV 128 (288)
T ss_pred hHHHHHHHHHHHHHhcCCCChhHHHHHHHHh--Ch-hhccccHHHHHHHHheeE
Confidence 566666555543 33455555555532 22 223456777777776653
No 234
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=37.65 E-value=84 Score=18.50 Aligned_cols=43 Identities=9% Similarity=0.061 Sum_probs=27.7
Q ss_pred HHHHHHh-CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhh
Q 030421 131 MEVLRKM-GEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTRN 173 (177)
Q Consensus 131 ~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~~ 173 (177)
..+|... |..++.+.++.+-+.++-.....|+|+|+..+-...
T Consensus 35 ~~WLskeRgG~IP~~V~~sl~kL~~La~~N~v~feeLc~YAL~~ 78 (82)
T PF11020_consen 35 ATWLSKERGGQIPEKVMDSLSKLYKLAKENNVSFEELCVYALGV 78 (82)
T ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3455544 556677777776666655555668888888765443
No 235
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=37.25 E-value=83 Score=19.79 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 030421 126 SAEELMEVLRKMGEKYSLDSCRKMIRG 152 (177)
Q Consensus 126 ~~~e~~~~l~~~~~~~~~~~~~~~~~~ 152 (177)
+.+|++.++......+++++++.++..
T Consensus 80 ~~dElrai~~~~~~~~~~e~l~~ILd~ 106 (112)
T PRK14981 80 TRDELRAIFAKERYTLSPEELDEILDI 106 (112)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 345555555555555555565555543
No 236
>PF12987 DUF3871: Domain of unknown function, B. Theta Gene description (DUF3871); InterPro: IPR024353 This entry represents proteins of unknown function found primarily in Bacteroides species. The B. thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].
Probab=37.10 E-value=1.3e+02 Score=22.71 Aligned_cols=57 Identities=18% Similarity=0.274 Sum_probs=42.8
Q ss_pred CCCCccCHHHHHHHHHHhC---------------CCCCHHHHHHHHHhhcCC-----CCCcccHHHHHHHHHhhccc
Q 030421 120 NGDKKISAEELMEVLRKMG---------------EKYSLDSCRKMIRGVDAD-----GDGLIDMDEFMTMMTRNVKV 176 (177)
Q Consensus 120 ~~~g~i~~~e~~~~l~~~~---------------~~~~~~~~~~~~~~~d~~-----~~g~is~~ef~~~l~~~~~~ 176 (177)
-++-.|+..+|.+++.++. ..+++..+..+.+.+-.| ..|.||...|.+++...-|.
T Consensus 213 L~~t~ltE~QFaQiiGR~RLYQ~LP~~~qk~lP~ll~tD~qiN~vak~Y~~d~nF~~~~~~Is~W~~ynLlT~AnKs 289 (323)
T PF12987_consen 213 LGDTSLTEHQFAQIIGRMRLYQALPQGEQKRLPRLLITDSQINTVAKAYYNDENFGRKGGEISMWNFYNLLTGANKS 289 (323)
T ss_pred hccCcccHHHHHHHHhHHHHHHhCCHhHHhhCCceecchHHHHHHHHHHhcCcccccCCCcccHHHHHHHHhcccch
Confidence 3567899999999996541 245678888888887332 36789999999999886553
No 237
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=36.73 E-value=5.9 Score=29.08 Aligned_cols=74 Identities=19% Similarity=0.198 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHhCCC
Q 030421 66 KGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEK 140 (177)
Q Consensus 66 ~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~ 140 (177)
...+++.+..+|..+.+-.+..|=|+|..-...... .......++.+|..+=.|=.-.|+.+.++..+..+|+-
T Consensus 16 ~~vte~~i~~lf~qig~v~~~k~i~~e~~v~wa~~p-~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGev 89 (321)
T KOG0148|consen 16 STVTEDFIATLFNQIGSVTKTKVIFDELKVNWATAP-GNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEV 89 (321)
T ss_pred hhhHHHHHHHHHHhccccccceeehhhhccccccCc-ccCCCCccccceeEEehhcchhcchHHHHHHhcccccc
Confidence 344555666666666555555666665544433211 22222345556666655555567777777777776643
No 238
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=36.65 E-value=89 Score=24.06 Aligned_cols=54 Identities=22% Similarity=0.242 Sum_probs=24.1
Q ss_pred hhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 030421 43 KFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMM 97 (177)
Q Consensus 43 ~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 97 (177)
.+|..+.|.++.--++-.+..+..+--.+.++.||... .+.+|-+.+-.|.+++
T Consensus 118 A~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~i-sds~gim~~i~~~~fl 171 (434)
T KOG4301|consen 118 AEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLI-SDSRGIMQEIQRDQFL 171 (434)
T ss_pred hcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHH-ccchHHHHHHHHHHHH
Confidence 34444555555544444444443333344455555544 3334434333333333
No 239
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=36.54 E-value=70 Score=21.09 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=19.0
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHhhcC
Q 030421 125 ISAEELMEVLRKMGEKYSLDSCRKMIRGVDA 155 (177)
Q Consensus 125 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 155 (177)
.|.++.+.+...+..++++++++.+++.++.
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 3556666665555556666666666666644
No 240
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=35.80 E-value=1.2e+02 Score=19.28 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=36.2
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHH
Q 030421 40 VFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIE 95 (177)
Q Consensus 40 ~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 95 (177)
.|..+--.++..++.+++..+|...|.......+..+++.+.. .+..+++.
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~g-----K~i~eLIa 56 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVKG-----KDITELIA 56 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 4444444556679999999999999988888888887777722 45566553
No 241
>PF02459 Adeno_terminal: Adenoviral DNA terminal protein; InterPro: IPR003391 The genome of adenovirus contains a protein covalently bound to the 5' end of each strand of the linear DNA molecule []. Since adenovirus DNA replication is initiated at the termini of the DNA molecule it has been proposed that the terminal protein serves as the primer for initiation of replication. However, the priming function now appears to reside in the precursor form of the terminal protein (pTP) found on the 5' ends of nascent DNA strands replicated in vitro [, ] and as a component of DNA-protein complexes isolated from virions of the protease-deficient adenovirus serotype 2 (Ad2) mutant tsl. The pTP is encoded by the leftward-transcribed strand of the viral genome and comprises part of a transcription unit that also encodes the single-strand DNA binding protein [].; GO: 0003677 DNA binding, 0006260 DNA replication
Probab=35.70 E-value=67 Score=26.23 Aligned_cols=48 Identities=10% Similarity=0.208 Sum_probs=37.2
Q ss_pred HHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCC
Q 030421 109 DIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDAD 156 (177)
Q Consensus 109 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~ 156 (177)
.+..+.-..+.-+.|.++.+|..++|..++..-..-+++++++++..|
T Consensus 456 I~~Dl~~~verag~~~~~~ee~e~~l~dI~y~~nSGDv~eIL~Q~~~n 503 (548)
T PF02459_consen 456 ISRDLLATVERAGRGELEEEEIEQFLADIAYRDNSGDVEEILRQAALN 503 (548)
T ss_pred HHHHHHHHHhccCcccCCHHHHHHHHHHhcccccCCCHHHHHHHhhcc
Confidence 344555666788888999999999999998766667788888887544
No 242
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=35.61 E-value=1.4e+02 Score=24.27 Aligned_cols=59 Identities=17% Similarity=0.230 Sum_probs=38.5
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHH---hhcC----CCC-CcccHHHHHHHHH
Q 030421 40 VFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFR---FIDT----DKD-GYIDFKEFIEMMH 98 (177)
Q Consensus 40 ~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~---~~d~----~~~-g~i~~~ef~~~~~ 98 (177)
+|..+-...++.+++--|..+|++.|..-+.-.++.++. .++. +.+ +.++-+.|...+.
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 566664445688999999999999887655555555554 3443 122 3577777777665
No 243
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=35.04 E-value=38 Score=31.69 Aligned_cols=67 Identities=12% Similarity=0.170 Sum_probs=44.2
Q ss_pred cchhHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCC----HHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 105 VKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYS----LDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172 (177)
Q Consensus 105 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~----~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 172 (177)
.+.+...++|..+|++..|.|...++..+++.+..++. .+. ..+-..+-...++.|++.+-+..+.+
T Consensus 1414 ~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1414 DDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred ccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 34467888999999999999999999999998743221 111 22222223346667777776666554
No 244
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=34.98 E-value=98 Score=18.22 Aligned_cols=46 Identities=13% Similarity=0.283 Sum_probs=32.2
Q ss_pred cCHHHHHHHHHHh----CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 030421 125 ISAEELMEVLRKM----GEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMT 171 (177)
Q Consensus 125 i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 171 (177)
=+...+|++++.. +.+++++..+.+...+-.++- ..++..++.++.
T Consensus 28 qdE~~vR~lIk~vs~~an~~Vs~~~ed~IV~~I~~~~~-p~d~~~l~Km~~ 77 (79)
T PF14069_consen 28 QDEKKVRQLIKQVSQIANKPVSKEQEDQIVQAIINQKI-PNDMNHLMKMMN 77 (79)
T ss_pred ccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC-CcCHHHHHHHHc
Confidence 3455666666553 778888888888888865555 567777777765
No 245
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.75 E-value=70 Score=25.18 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=40.3
Q ss_pred HHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHH
Q 030421 110 IQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFM 167 (177)
Q Consensus 110 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~ 167 (177)
...+|..+.+ -+|.|+-.--+..+- +..+....+-.+|+..|.|.||.++-+||.
T Consensus 446 yde~fy~l~p-~~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 446 YDEIFYTLSP-VNGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred hHhhhhcccc-cCceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 5566666643 357777665555553 334677888999999999999999999986
No 246
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=34.60 E-value=1.1e+02 Score=18.63 Aligned_cols=88 Identities=20% Similarity=0.343 Sum_probs=50.3
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHHHH
Q 030421 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAF 114 (177)
Q Consensus 35 ~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f 114 (177)
+.+...|..+ ...|+..++..+.+.+| +++.++..+-... + + +.+....++.. |
T Consensus 4 ~~l~~~f~~i----~~~V~~~~Wk~laR~LG--Lse~~I~~i~~~~-~---~--~~eq~~qmL~~--------------W 57 (96)
T cd08315 4 ETLRRSFDHF----IKEVPFDSWNRLMRQLG--LSENEIDVAKANE-R---V--TREQLYQMLLT--------------W 57 (96)
T ss_pred hHHHHHHHHH----HHHCCHHHHHHHHHHcC--CCHHHHHHHHHHC-C---C--CHHHHHHHHHH--------------H
Confidence 4556666666 23577788888888876 5666666655432 1 1 12322222221 1
Q ss_pred HhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHH
Q 030421 115 QLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIR 151 (177)
Q Consensus 115 ~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 151 (177)
+. ..|. .-|...+.+.|..++.....+.++..+.
T Consensus 58 ~~--~~G~-~At~~~L~~aL~~~~~~~~Ae~I~~~l~ 91 (96)
T cd08315 58 VN--KTGR-KASVNTLLDALEAIGLRLAKESIQDELI 91 (96)
T ss_pred HH--hhCC-CcHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 11 1111 3557788888888888777777766543
No 247
>PF12825 DUF3818: Domain of unknown function in PX-proteins (DUF3818); InterPro: IPR024554 The function of this domain is not known, but it is almost always found C-terminal to a PX-domain (IPR001683 from INTERPRO).
Probab=34.17 E-value=2.2e+02 Score=22.00 Aligned_cols=52 Identities=12% Similarity=0.211 Sum_probs=26.5
Q ss_pred CCcCCcchHHHHHHHHHhhcCCC-----------CCcccHHHHHHHHHhhCCCCCHHHHHHHH
Q 030421 26 VPRASRSNVQEMRQVFDKFDTNK-----------DGKISQDEYNSALSVLGKGISKAEMAKSF 77 (177)
Q Consensus 26 ~~~~~~~~~~~l~~~f~~~d~~~-----------~g~l~~~e~~~~l~~l~~~~~~~~~~~~~ 77 (177)
.+.+++.+..++.+.+..+.... .+.--+.+++.+++.+....+.+.+..++
T Consensus 169 ~p~L~~~~~~~v~~sy~~~~~~~~~~~~~~~~~~~~a~lf~~lk~yl~l~~r~RDk~~~~~l~ 231 (341)
T PF12825_consen 169 EPKLSPEQLQRVLESYKAWKNAVESVPDDDGEENEDAWLFSDLKEYLKLYLRKRDKEQMIQLW 231 (341)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhhccccCCCccchhhHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 46666677777776666553321 22223333444444443344555555555
No 248
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=34.05 E-value=1.1e+02 Score=18.54 Aligned_cols=80 Identities=16% Similarity=0.250 Sum_probs=47.1
Q ss_pred ccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCCccc---HHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHH
Q 030421 52 ISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDGYID---FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAE 128 (177)
Q Consensus 52 l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g~i~---~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~ 128 (177)
....++..........++..-+.++++..... .|+ .+++...+.. .-.+....+.....+.+.-+|+.+
T Consensus 4 ~~~~~~r~~~~~~~~~Lp~apv~Ri~r~~~~~---Rvs~~A~~~l~~~~e~-----~~~~i~~~A~~~A~ha~RKTV~~~ 75 (91)
T COG2036 4 VGLKEIRRYQRSTDLLLPKAPVRRILRKAGAE---RVSSSAIEELQEALEE-----YLEEIAEDAVELAEHAKRKTVKAE 75 (91)
T ss_pred chHHHHHhhhhhhhhhcCchHHHHHHHHHhHH---HhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCCeecHH
Confidence 33445555555555555666666776655443 232 2222222221 122345666677788888899999
Q ss_pred HHHHHHHHhCC
Q 030421 129 ELMEVLRKMGE 139 (177)
Q Consensus 129 e~~~~l~~~~~ 139 (177)
++...++..|.
T Consensus 76 DI~la~~~~~~ 86 (91)
T COG2036 76 DIKLALKRLGR 86 (91)
T ss_pred HHHHHHHHhcc
Confidence 99999988764
No 249
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=33.34 E-value=1.2e+02 Score=18.85 Aligned_cols=42 Identities=14% Similarity=0.408 Sum_probs=33.0
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 030421 125 ISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMT 171 (177)
Q Consensus 125 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~ 171 (177)
+|.+++..+|...|.....+.+..+++.+. | .+.++.+....
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa----G-k~V~eli~~g~ 58 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN----G-KNIDEVISKGK 58 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc----C-CCHHHHHHHHH
Confidence 999999999999999999999998888762 2 25566655443
No 250
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=32.81 E-value=1.1e+02 Score=18.26 Aligned_cols=48 Identities=17% Similarity=0.097 Sum_probs=34.6
Q ss_pred CCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 030421 122 DKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTM 169 (177)
Q Consensus 122 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~ 169 (177)
+-.|...+|++.|.....-.+..+...+-..+|-..++.||-=||--+
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvF 67 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVF 67 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHH
T ss_pred CeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHH
Confidence 367999999999998754445566677777788899999997666544
No 251
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=32.53 E-value=79 Score=17.97 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=23.8
Q ss_pred HHHHHHHhhccCCCCccCHHHHHHHHHHh----CCCCCHHHHHHHHHhh
Q 030421 109 DIQGAFQLFDLNGDKKISAEELMEVLRKM----GEKYSLDSCRKMIRGV 153 (177)
Q Consensus 109 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~ 153 (177)
.+..+...++.+-.--+-..+++.++..+ |...+++.++.+|..|
T Consensus 24 ~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 24 HLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 34444444443322234455666666654 6666777778887654
No 252
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=32.19 E-value=61 Score=15.02 Aligned_cols=14 Identities=29% Similarity=0.223 Sum_probs=9.1
Q ss_pred CCccCHHHHHHHHH
Q 030421 122 DKKISAEELMEVLR 135 (177)
Q Consensus 122 ~g~i~~~e~~~~l~ 135 (177)
+|.||.+||...-.
T Consensus 14 ~G~IseeEy~~~k~ 27 (31)
T PF09851_consen 14 KGEISEEEYEQKKA 27 (31)
T ss_pred cCCCCHHHHHHHHH
Confidence 57777777765543
No 253
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=32.17 E-value=1.3e+02 Score=24.03 Aligned_cols=61 Identities=18% Similarity=0.324 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHh-hCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 030421 34 VQEMRQVFDKFDTNKDGKISQDEYNSALSV-LGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMH 98 (177)
Q Consensus 34 ~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~-l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 98 (177)
.+.++.+-..+|-|.+|.|+.+|--.+++. +.+.-....-..-|. ..+..|+.+++...+.
T Consensus 67 ~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH----~dD~~ItVedLWeaW~ 128 (575)
T KOG4403|consen 67 YEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFH----GDDKHITVEDLWEAWK 128 (575)
T ss_pred HHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhcc----CCccceeHHHHHHHHH
Confidence 456677777778888888888877777765 222222211122221 2345677777666655
No 254
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=31.91 E-value=60 Score=15.49 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=12.0
Q ss_pred ccCHHHHHHHHHHhCCCC
Q 030421 124 KISAEELMEVLRKMGEKY 141 (177)
Q Consensus 124 ~i~~~e~~~~l~~~~~~~ 141 (177)
.++..|++..|+..|.+.
T Consensus 3 ~l~v~eLk~~l~~~gL~~ 20 (35)
T PF02037_consen 3 KLTVAELKEELKERGLST 20 (35)
T ss_dssp TSHHHHHHHHHHHTTS-S
T ss_pred cCcHHHHHHHHHHCCCCC
Confidence 366778888888776543
No 255
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=31.84 E-value=1.3e+02 Score=18.79 Aligned_cols=30 Identities=17% Similarity=0.358 Sum_probs=27.3
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 030421 124 KISAEELMEVLRKMGEKYSLDSCRKMIRGV 153 (177)
Q Consensus 124 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 153 (177)
.||.+.+..+|+..|....+..+..+++.+
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL 45 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAAL 45 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 799999999999999999998888888776
No 256
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.77 E-value=1.4e+02 Score=25.33 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=14.0
Q ss_pred HHHHHHhhccCCCCccCHHHHHHHHH
Q 030421 110 IQGAFQLFDLNGDKKISAEELMEVLR 135 (177)
Q Consensus 110 ~~~~f~~~D~~~~g~i~~~e~~~~l~ 135 (177)
...+++..|.++.|.+...++..++.
T Consensus 63 ~~~~~~~~~~~~~~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 63 AALIMEELDPDHKGYITNEDLEILLL 88 (646)
T ss_pred HHHhhhhccccccceeeecchhHHHH
Confidence 33445555555555666555555554
No 257
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=31.72 E-value=1.1e+02 Score=18.55 Aligned_cols=11 Identities=27% Similarity=0.534 Sum_probs=4.9
Q ss_pred CCCCcccHHHH
Q 030421 156 DGDGLIDMDEF 166 (177)
Q Consensus 156 ~~~g~is~~ef 166 (177)
.+++.|+-.-|
T Consensus 69 ~~~~~Ip~~~~ 79 (90)
T PF02337_consen 69 QGPEKIPIQAF 79 (90)
T ss_dssp CSTTTS-CHHH
T ss_pred hCCCCCChhHH
Confidence 45555554433
No 258
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=31.56 E-value=54 Score=15.30 Aligned_cols=11 Identities=45% Similarity=0.637 Sum_probs=4.9
Q ss_pred cCHHHHHHHHH
Q 030421 125 ISAEELMEVLR 135 (177)
Q Consensus 125 i~~~e~~~~l~ 135 (177)
|+.+|++.+|.
T Consensus 17 ls~eeir~FL~ 27 (30)
T PF08671_consen 17 LSKEEIREFLE 27 (30)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 55555555554
No 259
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=31.01 E-value=83 Score=16.16 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=16.0
Q ss_pred cHHHHHHHHHhhCCCCCHHHH
Q 030421 53 SQDEYNSALSVLGKGISKAEM 73 (177)
Q Consensus 53 ~~~e~~~~l~~l~~~~~~~~~ 73 (177)
+.+++..+.+..|+.++..++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 677788888888888877664
No 260
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=31.00 E-value=45 Score=20.42 Aligned_cols=15 Identities=27% Similarity=0.609 Sum_probs=6.6
Q ss_pred CcccHHHHHHHHHhh
Q 030421 159 GLIDMDEFMTMMTRN 173 (177)
Q Consensus 159 g~is~~ef~~~l~~~ 173 (177)
|.|+-+||...+...
T Consensus 39 ~~i~~EeF~~~Lq~~ 53 (96)
T PF07531_consen 39 GKIEAEEFTSKLQEE 53 (96)
T ss_dssp TSS-HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 444555555444443
No 261
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=30.72 E-value=69 Score=15.15 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=12.6
Q ss_pred ccCHHHHHHHHHHhCCCC
Q 030421 124 KISAEELMEVLRKMGEKY 141 (177)
Q Consensus 124 ~i~~~e~~~~l~~~~~~~ 141 (177)
.++..+++..|+..|.+.
T Consensus 3 ~l~~~~Lk~~l~~~gl~~ 20 (35)
T smart00513 3 KLKVSELKDELKKRGLST 20 (35)
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 467778888888776543
No 262
>PHA02771 hypothetical protein; Provisional
Probab=30.70 E-value=1.3e+02 Score=18.21 Aligned_cols=8 Identities=38% Similarity=0.634 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 030421 129 ELMEVLRK 136 (177)
Q Consensus 129 e~~~~l~~ 136 (177)
+++.++..
T Consensus 5 ~lK~ii~~ 12 (90)
T PHA02771 5 ELKSIIDK 12 (90)
T ss_pred HHHHHHHH
Confidence 33444433
No 263
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=30.29 E-value=10 Score=17.62 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=6.5
Q ss_pred HHhhccCCCCccCH
Q 030421 114 FQLFDLNGDKKISA 127 (177)
Q Consensus 114 f~~~D~~~~g~i~~ 127 (177)
...-|.|++-+|+.
T Consensus 5 L~qEDTDgn~qITI 18 (30)
T PF07492_consen 5 LEQEDTDGNFQITI 18 (30)
T ss_pred hhccccCCCcEEEE
Confidence 33445555555443
No 264
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=30.27 E-value=95 Score=16.59 Aligned_cols=31 Identities=23% Similarity=0.453 Sum_probs=23.2
Q ss_pred CCCcccHHHHHHHHHhhCCCCCHHHHHHHHH
Q 030421 48 KDGKISQDEYNSALSVLGKGISKAEMAKSFR 78 (177)
Q Consensus 48 ~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~ 78 (177)
..|.|+..||..-+.......+..++..++.
T Consensus 20 a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~~ 50 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAYAARTRGELDALFA 50 (53)
T ss_pred HCCCCCHHHHHHHHHHHHhcCcHHHHHHHHc
Confidence 5799999999888877655666677766654
No 265
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=30.10 E-value=1.6e+02 Score=19.18 Aligned_cols=48 Identities=10% Similarity=0.136 Sum_probs=27.3
Q ss_pred hHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCC
Q 030421 108 NDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADG 157 (177)
Q Consensus 108 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 157 (177)
+.+..+-+.+...+=..-..+.=..+|+.-| ++++||++++.......
T Consensus 4 ~li~~A~~FL~~p~V~~sp~~~k~~FL~sKG--Lt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 4 DLIEQAVKFLQDPKVRNSPLEKKIAFLESKG--LTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHHHHHCTTTCCCS-HHHHHHHHHHCT----HHHHHHHHHHHT--S
T ss_pred HHHHHHHHHhCCcccccCCHHHHHHHHHcCC--CCHHHHHHHHHhcCCcc
Confidence 3445555555444444455666677777766 78888888888775443
No 266
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=29.95 E-value=52 Score=19.14 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=15.3
Q ss_pred hcCCCCCcccHHHHHHHHH
Q 030421 153 VDADGDGLIDMDEFMTMMT 171 (177)
Q Consensus 153 ~d~~~~g~is~~ef~~~l~ 171 (177)
...|..|.|+++.|+....
T Consensus 11 ~~~n~~G~iTl~gfLa~W~ 29 (76)
T PF08355_consen 11 VVTNEKGWITLQGFLAQWS 29 (76)
T ss_pred eEEcCCCcCcHHHHHHHHH
Confidence 3468899999999998654
No 267
>PRK04387 hypothetical protein; Provisional
Probab=29.25 E-value=1.4e+02 Score=18.12 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=41.8
Q ss_pred CcCCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhC-CCCCHHHHHHHHHhhcCCCCCcccHH
Q 030421 27 PRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLG-KGISKAEMAKSFRFIDTDKDGYIDFK 91 (177)
Q Consensus 27 ~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~-~~~~~~~~~~~~~~~d~~~~g~i~~~ 91 (177)
...+.+++-.+..+|+.....-...|..++|....+.+- ..++..+=+.+++.|.. .+|+=.|.
T Consensus 9 ~dWsteEii~Vi~F~~~VE~aYE~gv~re~ll~~Y~~FK~VVpsK~EEKql~reFe~-~SGYS~Y~ 73 (90)
T PRK04387 9 LDWSTEEMISVLHFFNAVEKAYEKGVDAEELLDAYRRFKEIVPSKAEEKQIDREFEK-VSGYSIYR 73 (90)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HcCCcHHH
Confidence 346677777777777777666566788888877777664 45666666777766632 34444443
No 268
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=28.99 E-value=46 Score=19.56 Aligned_cols=17 Identities=12% Similarity=0.305 Sum_probs=6.6
Q ss_pred cCCCCccCHHHHHHHHH
Q 030421 119 LNGDKKISAEELMEVLR 135 (177)
Q Consensus 119 ~~~~g~i~~~e~~~~l~ 135 (177)
.+..+.++..+.+..++
T Consensus 48 ~n~~~~lt~~~~~~~i~ 64 (86)
T PF04433_consen 48 KNPNKYLTKTDARKLIK 64 (86)
T ss_dssp HHTTS---HHHHHHHTT
T ss_pred HCCCCcccHHHHHHHcc
Confidence 34445555555544443
No 269
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=28.95 E-value=1.3e+02 Score=17.91 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=13.9
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHH
Q 030421 125 ISAEELMEVLRKMGEKYSLDSCRKMI 150 (177)
Q Consensus 125 i~~~e~~~~l~~~~~~~~~~~~~~~~ 150 (177)
|+.++++.+.+-....+++++++.+.
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~ 26 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFA 26 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 34555555555555556665554443
No 270
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=28.47 E-value=1.7e+02 Score=18.93 Aligned_cols=50 Identities=16% Similarity=0.350 Sum_probs=23.4
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHH---HHHHHhhcCCCCCcccHHHHHHHHHhhcc
Q 030421 124 KISAEELMEVLRKMGEKYSLDSC---RKMIRGVDADGDGLIDMDEFMTMMTRNVK 175 (177)
Q Consensus 124 ~i~~~e~~~~l~~~~~~~~~~~~---~~~~~~~d~~~~g~is~~ef~~~l~~~~~ 175 (177)
.++.+|+..++...|..+ ++-+ ...++..+.+. ..++-++.++.|..++.
T Consensus 36 ~~s~~eL~~~l~~~~~~~-~~lin~~~~~~k~L~~~~-~~ls~~e~i~ll~~~P~ 88 (132)
T PRK13344 36 PLTKEEILAILTKTENGI-ESIVSSKNRYAKALDCDI-EELSVNEVIDLIQENPR 88 (132)
T ss_pred CCCHHHHHHHHHHhCCCH-HHhhccCcHHHHhCCcch-hcCCHHHHHHHHHhCcc
Confidence 466667777776654211 0111 12233332222 34566666666665543
No 271
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=28.37 E-value=90 Score=18.33 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=13.2
Q ss_pred HHHHHHHHhCCCCCHHHHHHH
Q 030421 129 ELMEVLRKMGEKYSLDSCRKM 149 (177)
Q Consensus 129 e~~~~l~~~~~~~~~~~~~~~ 149 (177)
|+..+|+.+|..+++++..-+
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL 41 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFL 41 (78)
T ss_dssp HHHHHHHHTT----HHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHH
Confidence 667788999999999886554
No 272
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=27.87 E-value=1.6e+02 Score=18.56 Aligned_cols=38 Identities=21% Similarity=0.360 Sum_probs=28.1
Q ss_pred HHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 030421 110 IQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGV 153 (177)
Q Consensus 110 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 153 (177)
...++..+. .....++.+|+..++ .+|...+..+++.+
T Consensus 6 y~~L~~~~~-~~~~~vtl~elA~~l-----~cS~Rn~r~lLkkm 43 (115)
T PF12793_consen 6 YQRLWQHYG-GQPVEVTLDELAELL-----FCSRRNARTLLKKM 43 (115)
T ss_pred HHHHHHHcC-CCCcceeHHHHHHHh-----CCCHHHHHHHHHHH
Confidence 345555565 666678999998888 36788888888877
No 273
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=27.50 E-value=1.5e+02 Score=25.51 Aligned_cols=57 Identities=12% Similarity=0.191 Sum_probs=41.0
Q ss_pred HHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 109 DIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172 (177)
Q Consensus 109 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 172 (177)
..+.+|+..-..+.-.+..+++..++ .+++++.++..++...++.|++..|.+.+..
T Consensus 405 aA~~iF~nv~~p~~~~i~ld~~~~f~-------~~E~a~~~~slfe~~~~~~Itrs~~~~~iv~ 461 (714)
T KOG4629|consen 405 AARKIFKNVAKPGVILIDLDDLLRFM-------GDEEAERAFSLFEGASDENITRSSFKEWIVN 461 (714)
T ss_pred HHHHHHhccCCCCccchhhhhhhhcC-------CHHHHHHHHHhhhhhcccCccHHHHHHHHHH
Confidence 35677888777766666666654443 5788888888888766666999888887654
No 274
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=27.13 E-value=2.1e+02 Score=19.48 Aligned_cols=47 Identities=11% Similarity=0.177 Sum_probs=30.1
Q ss_pred chhHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 030421 106 KKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDSCRKMIRGV 153 (177)
Q Consensus 106 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 153 (177)
....+..+++.+-.++...++..+|...|- .|..++++++...+..+
T Consensus 83 t~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cG-VGV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 83 TNLQLDAALKYLKSNPSEPIDVAEFEKACG-VGVVVTPEQIEAAVEKY 129 (164)
T ss_dssp SHHHHHHHHHHHHHHGG-G--HHHHHHTTT-TT----HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHcC-CCeEECHHHHHHHHHHH
Confidence 345788888888766666799999877663 57788999988887766
No 275
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=27.09 E-value=1.5e+02 Score=17.75 Aligned_cols=88 Identities=8% Similarity=0.152 Sum_probs=38.6
Q ss_pred ccHHHHHHHHHhhCC-CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHHHH
Q 030421 52 ISQDEYNSALSVLGK-GISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEEL 130 (177)
Q Consensus 52 l~~~e~~~~l~~l~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~ 130 (177)
++..+|..++..+.. ....+.+..+-... .+.. .++-.+...++..+.........++.++.. .++++-+
T Consensus 5 m~~~~f~~~~~~lk~~~fd~dkl~~l~~~~-~~~~-~~T~~Qv~~il~~f~fd~~kl~~lk~l~p~-------i~D~~n~ 75 (95)
T PF14771_consen 5 MSDNDFEQFLEQLKKESFDSDKLKVLEAAA-KTNN-CFTCAQVKQILSLFSFDNDKLKALKLLYPY-------IVDPQNY 75 (95)
T ss_pred CCHHHHHHHHHHHHcCCCcHHHHHHHHHHH-hcCC-ceeHHHHHHHHHHcCCCHHHHHHHHHHhhh-------ccCHHHH
Confidence 344555555555443 23333333332222 2211 477777777776554333222233333321 2333334
Q ss_pred HHHHHHhCCCCCHHHHHH
Q 030421 131 MEVLRKMGEKYSLDSCRK 148 (177)
Q Consensus 131 ~~~l~~~~~~~~~~~~~~ 148 (177)
..+...+....+.+++..
T Consensus 76 ~~i~~~f~f~s~k~~~~~ 93 (95)
T PF14771_consen 76 YTIIDAFSFSSDKDKARE 93 (95)
T ss_pred HHHHHHhcCcccHHHHHH
Confidence 444554444444555444
No 276
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=26.41 E-value=79 Score=22.38 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=21.7
Q ss_pred HHHHhhccCCCCccCHHHHHHHHHHhC
Q 030421 112 GAFQLFDLNGDKKISAEELMEVLRKMG 138 (177)
Q Consensus 112 ~~f~~~D~~~~g~i~~~e~~~~l~~~~ 138 (177)
.+...+|.+++|.++.+|+..+....-
T Consensus 54 ~ll~~~D~~~dg~~~~~el~~l~~~~~ 80 (212)
T PF06226_consen 54 YLLEGLDKDGDGKLDPEELAALAKEIF 80 (212)
T ss_pred HHHHhhhhcccCCCCHHHHHHHHHHHH
Confidence 344578999999999999998887653
No 277
>PF05256 UPF0223: Uncharacterised protein family (UPF0223); InterPro: IPR007920 This family of proteins is functionally uncharacterised.; PDB: 2OY9_B.
Probab=26.37 E-value=1.2e+02 Score=18.29 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=34.4
Q ss_pred cCCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhC-CCCCHHHHHHHHHhhcCCCCCcccHH
Q 030421 28 RASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLG-KGISKAEMAKSFRFIDTDKDGYIDFK 91 (177)
Q Consensus 28 ~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~-~~~~~~~~~~~~~~~d~~~~g~i~~~ 91 (177)
..+.+++-.+..+|+.....-.+.|+.++|....+.+- ..++..+=+.+++.|.. .+|+-.|.
T Consensus 10 dWsteEii~Vi~F~~~VE~AYE~gV~r~~ll~~Y~~FK~VVpsK~EEKql~r~Fe~-~SGYs~Y~ 73 (88)
T PF05256_consen 10 DWSTEEIIDVINFFNAVEKAYEKGVDREELLDAYRRFKKVVPSKSEEKQLDREFEE-QSGYSIYR 73 (88)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTT-EEHHHHHHHHHHHHHH---HHHHHHHHHHHHC-CSS--HHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHcccHHHHHHHHHHHHH-HhCCcHHH
Confidence 45666777777777766555556777777777766653 45566666667766633 33443333
No 278
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=26.07 E-value=1.3e+02 Score=16.62 Aligned_cols=25 Identities=8% Similarity=0.267 Sum_probs=20.7
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHH
Q 030421 125 ISAEELMEVLRKMGEKYSLDSCRKM 149 (177)
Q Consensus 125 i~~~e~~~~l~~~~~~~~~~~~~~~ 149 (177)
.+.+++..+.+..|..++.+++...
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4478899999999999999888764
No 279
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=26.04 E-value=2.4e+02 Score=20.05 Aligned_cols=87 Identities=8% Similarity=0.108 Sum_probs=41.4
Q ss_pred cccHHHHHHHH-HhhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCcc-CHH
Q 030421 51 KISQDEYNSAL-SVLGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKI-SAE 128 (177)
Q Consensus 51 ~l~~~e~~~~l-~~l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i-~~~ 128 (177)
.++-+.|...+ ..+...-.++..+.||..+-.-...---++.|+.-... ........++..-|+..=.+.+..+ +.+
T Consensus 27 pf~t~lFd~~~~~~~s~q~~ee~F~~l~~sV~~m~~~i~~~n~fl~~~~~-~~~~~~~~~~~~YyKkhIy~~d~~v~d~~ 105 (205)
T PF12238_consen 27 PFKTSLFDETVLSNLSGQSDEEKFKSLFDSVPLMKHKISHMNAFLNDWPP-HMLEEGREKMTKYYKKHIYKEDSEVKDYN 105 (205)
T ss_pred CCchhhhhHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCch-hhhhccHHHHHHHHHHhccCcccccccHH
Confidence 45555554433 33444444455555544331111111223444442211 1222344567777766555555666 777
Q ss_pred HHHHHHHHhC
Q 030421 129 ELMEVLRKMG 138 (177)
Q Consensus 129 e~~~~l~~~~ 138 (177)
-+..+|+.+-
T Consensus 106 ~lv~~ck~Fl 115 (205)
T PF12238_consen 106 GLVKFCKDFL 115 (205)
T ss_pred HHHHHHHHHh
Confidence 7777777653
No 280
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=25.88 E-value=2.3e+02 Score=21.79 Aligned_cols=68 Identities=24% Similarity=0.357 Sum_probs=46.6
Q ss_pred HHHHHHHHHh--hCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHHHHH
Q 030421 54 QDEYNSALSV--LGKGISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELM 131 (177)
Q Consensus 54 ~~e~~~~l~~--l~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~ 131 (177)
+..|...+.. +|+......+....+ .|.||.+|=+..+.. .......+.++..++.++ ||.+||.
T Consensus 273 ~~~~~~y~~~~KfG~~~~~~~~s~~IR------~G~itReeal~~v~~-~d~~~~~~~~~~~~~~lg------~t~~ef~ 339 (343)
T TIGR03573 273 FTIFHDYLKYLKFGFGRATDHASIDIR------SGRITREEAIELVKE-YDGEFPKEDLEYFLKYLG------ISEEEFW 339 (343)
T ss_pred hHHHHHHHHHhhcCCCcCchHHHHHHH------cCCCCHHHHHHHHHH-hcccccHHHHHHHHHHhC------CCHHHHH
Confidence 4445555533 576555555555554 789999999999886 333444578888889986 7888888
Q ss_pred HHH
Q 030421 132 EVL 134 (177)
Q Consensus 132 ~~l 134 (177)
.++
T Consensus 340 ~~~ 342 (343)
T TIGR03573 340 KTV 342 (343)
T ss_pred HHh
Confidence 765
No 281
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=25.71 E-value=1.6e+02 Score=17.62 Aligned_cols=65 Identities=17% Similarity=0.267 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHhhcCCCCCccc---HHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHhCCC
Q 030421 68 ISKAEMAKSFRFIDTDKDGYID---FKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEK 140 (177)
Q Consensus 68 ~~~~~~~~~~~~~d~~~~g~i~---~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~ 140 (177)
++...+.++.+.... ..|+ +++....+... -.+.++.+-......+.-+|+.++...+++..|.+
T Consensus 14 i~k~~I~RLarr~Gv---kRIS~d~y~e~~~~l~~~-----l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g~~ 81 (85)
T cd00076 14 ITKPAIRRLARRGGV---KRISGGVYDEVRNVLKSY-----LEDVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 81 (85)
T ss_pred CCHHHHHHHHHHcCc---chhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHCCCC
Confidence 455556666554332 2333 55555544421 22355566666667788889999999999988754
No 282
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=25.70 E-value=1.1e+02 Score=15.98 Aligned_cols=31 Identities=16% Similarity=0.299 Sum_probs=24.5
Q ss_pred CCccCHHHHHHHHHHh-CCCCCHHHHHHHHHh
Q 030421 122 DKKISAEELMEVLRKM-GEKYSLDSCRKMIRG 152 (177)
Q Consensus 122 ~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~ 152 (177)
.+.++.+.+..-|... |..+++++++-.+..
T Consensus 16 ~~~~Sk~~l~~QL~se~ge~Ft~e~A~YAv~~ 47 (48)
T PF07553_consen 16 TMHMSKQGLYDQLTSEYGEGFTEEEAQYAVDH 47 (48)
T ss_pred hccCCHHHHHHHHHhhcccCCCHHHHHHHHHc
Confidence 4568999998888764 888999998877654
No 283
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=25.02 E-value=1.4e+02 Score=16.88 Aligned_cols=45 Identities=16% Similarity=0.285 Sum_probs=19.2
Q ss_pred CccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 030421 123 KKISAEELMEVLRKMGEKYSLDSCRKMIRGVDADGDGLIDMDEFMTMMTR 172 (177)
Q Consensus 123 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~is~~ef~~~l~~ 172 (177)
|.++.+|...+.... ...+.+..+++.+...++ =.|..|+..+..
T Consensus 26 ~vlt~~e~~~i~~~~---~~~~k~~~Lld~l~~kg~--~af~~F~~~L~~ 70 (80)
T cd01671 26 GVLTEEEYEKIRSES---TRQDKARKLLDILPRKGP--KAFQSFLQALQE 70 (80)
T ss_pred CCCCHHHHHHHHcCC---ChHHHHHHHHHHHHhcCh--HHHHHHHHHHHh
Confidence 455555544433211 134444445544433222 245555555443
No 284
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=24.85 E-value=2e+02 Score=22.18 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=18.7
Q ss_pred HHhhcCCCCCcccHHHHHHHHHhhCCC
Q 030421 41 FDKFDTNKDGKISQDEYNSALSVLGKG 67 (177)
Q Consensus 41 f~~~d~~~~g~l~~~e~~~~l~~l~~~ 67 (177)
|+..+.++.+.++..+-..++..++.+
T Consensus 131 FDI~~~~~~~~lp~~eR~~lLe~lg~~ 157 (342)
T cd07894 131 FDIRKKNTGRPLPVEERRELLEKYGLP 157 (342)
T ss_pred EeeEEcCCCCCCCHHHHHHHHHhcCCC
Confidence 344444445678899999999888653
No 285
>KOG2278 consensus RNA:NAD 2'-phosphotransferase TPT1 [Translation, ribosomal structure and biogenesis]
Probab=24.70 E-value=97 Score=21.36 Aligned_cols=38 Identities=8% Similarity=0.164 Sum_probs=28.4
Q ss_pred hhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q 030421 43 KFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFRFI 80 (177)
Q Consensus 43 ~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~ 80 (177)
++...++|+++.+++.++=+.-+..-+-++++++...-
T Consensus 26 ~L~m~~dGfvpv~~lL~lnq~r~~~~t~ddi~riVk~n 63 (207)
T KOG2278|consen 26 RLNMRGDGFVPVEDLLNLNQFRGANHTIDDIRRIVKRN 63 (207)
T ss_pred cccccCCCceEHHHHhccchhcccCCcHHHHHHHHhcc
Confidence 45667899999999988665556666778888887643
No 286
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=24.33 E-value=1.7e+02 Score=17.46 Aligned_cols=20 Identities=30% Similarity=0.747 Sum_probs=12.0
Q ss_pred hhHHHHHHHhhccCCCCccC
Q 030421 107 KNDIQGAFQLFDLNGDKKIS 126 (177)
Q Consensus 107 ~~~~~~~f~~~D~~~~g~i~ 126 (177)
..++..+|+.+..+++..++
T Consensus 58 ~~EL~EA~rl~~~n~~~~l~ 77 (83)
T cd06404 58 QMELEEAFRLYELNKDSELN 77 (83)
T ss_pred HHHHHHHHHHHHhcCcccEE
Confidence 34666677766666655443
No 287
>PRK10026 arsenate reductase; Provisional
Probab=23.85 E-value=2.2e+02 Score=18.76 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=28.2
Q ss_pred CccCHHHHHHHHHHhCCCCCHHHH---HHHHHhhcCCCCCcccHHHHHHHHHhhcc
Q 030421 123 KKISAEELMEVLRKMGEKYSLDSC---RKMIRGVDADGDGLIDMDEFMTMMTRNVK 175 (177)
Q Consensus 123 g~i~~~e~~~~l~~~~~~~~~~~~---~~~~~~~d~~~~g~is~~ef~~~l~~~~~ 175 (177)
..+|.+|++.++...|.. ..+-+ ...++....+.+ .+|.++.+..|..++.
T Consensus 37 ~ppt~~eL~~~l~~~g~~-~~~lint~~~~yr~L~~~~~-~ls~~e~l~ll~~~P~ 90 (141)
T PRK10026 37 TPPTRDELVKLIADMGIS-VRALLRKNVEPYEELGLAED-KFTDDQLIDFMLQHPI 90 (141)
T ss_pred CCcCHHHHHHHHHhCCCC-HHHHHHcCCchHHHcCCCcc-CCCHHHHHHHHHhCcc
Confidence 347777777777776631 11111 123444433332 3677777777777654
No 288
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=23.63 E-value=1.6e+02 Score=17.12 Aligned_cols=42 Identities=31% Similarity=0.526 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhhcC-CCCCcccHHHHHHHH
Q 030421 127 AEELMEVLRKMGEKYSLDSCRKMIRGVDA-DGDGLIDMDEFMTMM 170 (177)
Q Consensus 127 ~~e~~~~l~~~~~~~~~~~~~~~~~~~d~-~~~g~is~~ef~~~l 170 (177)
.+++...| .|...+.+.+.+.+..++. +--|.++-++|++++
T Consensus 44 i~~le~~L--~G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEAL--IGCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHH--TTCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHH--HhcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 44555555 3555666666666666633 334456666666653
No 289
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=23.62 E-value=2.5e+02 Score=19.33 Aligned_cols=39 Identities=21% Similarity=0.443 Sum_probs=28.8
Q ss_pred hccCCCCccCHHHHHHHHHHh--CCCCCHHHHHHHHHhhcC
Q 030421 117 FDLNGDKKISAEELMEVLRKM--GEKYSLDSCRKMIRGVDA 155 (177)
Q Consensus 117 ~D~~~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~ 155 (177)
+..+....+|.++|...++.. |..++.+.+..+++.+..
T Consensus 142 Hn~~~~~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~~ 182 (185)
T cd00171 142 HNPNVKKKMTLEDFIKNLRGINDGEDFPREFLKELYDSIKN 182 (185)
T ss_pred cCcccCCCCCHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Confidence 344545678999998888876 458888888888887643
No 290
>PTZ00015 histone H4; Provisional
Probab=23.52 E-value=1.9e+02 Score=17.93 Aligned_cols=69 Identities=14% Similarity=0.214 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHhCCC
Q 030421 67 GISKAEMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEK 140 (177)
Q Consensus 67 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~ 140 (177)
.++...+.++.+......-...-++++...+... -.+.++.+-......+.-+|+.++...+++..|..
T Consensus 30 gI~k~~IrRLarr~GvkRIS~d~y~e~r~vle~~-----l~~I~rdav~~aeHA~RKTVt~~DV~~AlKr~g~~ 98 (102)
T PTZ00015 30 GITKGAIRRLARRGGVKRISGDIYEEVRGVLKAF-----LENVVRDSTAYTEYARRKTVTAMDVVYALKRQGRT 98 (102)
T ss_pred CCCHHHHHHHHHHcCCccchHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCC
Confidence 3444455555554333222222344444444321 22355666666667788889999999999887753
No 291
>PF13551 HTH_29: Winged helix-turn helix
Probab=23.49 E-value=1.8e+02 Score=17.49 Aligned_cols=51 Identities=10% Similarity=0.179 Sum_probs=35.1
Q ss_pred CCcchHHHHHHHHHhhcCCCCCcccHHHHHHHH--HhhCCCCCHHHHHHHHHh
Q 030421 29 ASRSNVQEMRQVFDKFDTNKDGKISQDEYNSAL--SVLGKGISKAEMAKSFRF 79 (177)
Q Consensus 29 ~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l--~~l~~~~~~~~~~~~~~~ 79 (177)
++++....+.+++...-.++.+..+...+...+ ...+..++...+..++..
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~r~L~~ 110 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIRRILKR 110 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHHHHHHH
Confidence 677777778777776644433468888888754 335677788777777764
No 292
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=23.18 E-value=1.8e+02 Score=17.38 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=16.4
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHH
Q 030421 125 ISAEELMEVLRKMGEKYSLDSCRKMIR 151 (177)
Q Consensus 125 i~~~e~~~~l~~~~~~~~~~~~~~~~~ 151 (177)
|+.++++.+.+-....+++++++.+..
T Consensus 3 i~~e~i~~la~La~l~l~~ee~~~~~~ 29 (95)
T PRK00034 3 ITREEVKHLAKLARLELSEEELEKFAG 29 (95)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 566666666666666666666554433
No 293
>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]
Probab=22.96 E-value=3.3e+02 Score=22.28 Aligned_cols=39 Identities=13% Similarity=0.185 Sum_probs=24.5
Q ss_pred CCCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhhcCCCCC
Q 030421 47 NKDGKISQDEYNSALSVLGKGISKAEMAKSFRFIDTDKDG 86 (177)
Q Consensus 47 ~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~d~~~~g 86 (177)
+..+.++..+..++|..+|.+ ....--.++.....++.|
T Consensus 46 ~~~~~~~l~~m~~~L~~lg~p-~d~~~l~iIHVAGTkGKG 84 (496)
T KOG2525|consen 46 DNPQGLTLPRMRKLLERLGNP-EDQNSLNIIHVAGTKGKG 84 (496)
T ss_pred CCccccCHHHHHHHHHHhCCh-hhhhheeEEEEecCCCCc
Confidence 345678888889999988866 222223344555666655
No 294
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=22.74 E-value=1.3e+02 Score=15.53 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=20.1
Q ss_pred CCCccC-HHHHHHHHHHhCCCCCHHHHHHHHHhh
Q 030421 121 GDKKIS-AEELMEVLRKMGEKYSLDSCRKMIRGV 153 (177)
Q Consensus 121 ~~g~i~-~~e~~~~l~~~~~~~~~~~~~~~~~~~ 153 (177)
..|.|+ ..++.+-|...|..++++.++.+++.+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 346665 334444445557778887777776643
No 295
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=22.48 E-value=80 Score=21.98 Aligned_cols=44 Identities=16% Similarity=0.358 Sum_probs=35.6
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHH
Q 030421 35 QEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFR 78 (177)
Q Consensus 35 ~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~ 78 (177)
...+++|..||+..--..+.+++..++..-|.-.....+..+..
T Consensus 55 e~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i~ 98 (188)
T COG2818 55 EAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATIN 98 (188)
T ss_pred HHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHHH
Confidence 47788999999998889999999999998887666666665543
No 296
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=22.47 E-value=1.5e+02 Score=16.23 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=26.6
Q ss_pred CCcCCcchHHHHHHHHHhhcCCCCCc----ccHHHHHHHHHhhCC
Q 030421 26 VPRASRSNVQEMRQVFDKFDTNKDGK----ISQDEYNSALSVLGK 66 (177)
Q Consensus 26 ~~~~~~~~~~~l~~~f~~~d~~~~g~----l~~~e~~~~l~~l~~ 66 (177)
...++..++..|...|... |+ .+..+...+...+|.
T Consensus 5 RT~Ft~~Q~~~Le~~fe~~-----~y~~~~~~~~~r~~la~~lgl 44 (58)
T TIGR01565 5 RTKFTAEQKEKMRDFAEKL-----GWKLKDKRREEVREFCEEIGV 44 (58)
T ss_pred CCCCCHHHHHHHHHHHHHc-----CCCCCCCCHHHHHHHHHHhCC
Confidence 3467788888999888855 44 677777787877764
No 297
>PF08730 Rad33: Rad33; InterPro: IPR014841 Rad33 is involved in nucleotide excision repair (NER). NER is the main pathway for repairing DNA lesions induced by UV. Cells deleted for RAD33 display intermediate UV sensitivity that is epistatic with NER [].
Probab=22.35 E-value=2.7e+02 Score=19.11 Aligned_cols=39 Identities=5% Similarity=0.181 Sum_probs=28.8
Q ss_pred cCCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCC
Q 030421 28 RASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKG 67 (177)
Q Consensus 28 ~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~ 67 (177)
.+.++-..++.++|..+-.+ ++-+...++-.++..|..+
T Consensus 7 ki~~EiEDEILe~Ya~~~~~-~~D~~l~~Lp~~f~~L~IP 45 (170)
T PF08730_consen 7 KIPPEIEDEILEAYAEYTED-EQDMTLKDLPNYFEDLQIP 45 (170)
T ss_pred cCChHHHHHHHHHHHHhcCC-ccceeHHHHHHHHHHcCCC
Confidence 44445556888888888443 6779999999999988654
No 298
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=22.34 E-value=1.4e+02 Score=16.03 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=16.0
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHhh
Q 030421 129 ELMEVLRKMGEKYSLDSCRKMIRGV 153 (177)
Q Consensus 129 e~~~~l~~~~~~~~~~~~~~~~~~~ 153 (177)
|.+..|..-|+.++.+.++-++..+
T Consensus 16 Eak~~L~k~GIeLsme~~qP~m~L~ 40 (56)
T PF10815_consen 16 EAKEELDKKGIELSMEMLQPLMQLL 40 (56)
T ss_pred HHHHHHHHcCccCCHHHHHHHHHHH
Confidence 4566666677777777766655543
No 299
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=22.26 E-value=1.5e+02 Score=16.32 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=8.0
Q ss_pred CccCHHHHHHHHHHhC
Q 030421 123 KKISAEELMEVLRKMG 138 (177)
Q Consensus 123 g~i~~~e~~~~l~~~~ 138 (177)
+.++...++.+|...|
T Consensus 43 ~~~~~~~l~~~lD~~g 58 (64)
T PF09494_consen 43 RKVDPSKLKEWLDSQG 58 (64)
T ss_pred ceeCHHHHHHHHHHCC
Confidence 4455555555555444
No 300
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=22.05 E-value=50 Score=20.41 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=27.2
Q ss_pred ccCHHHHHHHHHHhCCCCCH--HHHHHHHHhhcCCCCCcccHHHHHHHHHhhccc
Q 030421 124 KISAEELMEVLRKMGEKYSL--DSCRKMIRGVDADGDGLIDMDEFMTMMTRNVKV 176 (177)
Q Consensus 124 ~i~~~e~~~~l~~~~~~~~~--~~~~~~~~~~d~~~~g~is~~ef~~~l~~~~~~ 176 (177)
.++.+|+..++..+|..+.. ..-...++..+......++-+++++.|..++++
T Consensus 32 p~s~~el~~~l~~~~~~~~~lin~~~~~~k~l~~~~~~~~s~~e~i~~l~~~p~L 86 (110)
T PF03960_consen 32 PLSREELRELLSKLGNGPDDLINTRSKTYKELGKLKKDDLSDEELIELLLENPKL 86 (110)
T ss_dssp ---HHHHHHHHHHHTSSGGGGB-TTSHHHHHTTHHHCTTSBHHHHHHHHHHSGGG
T ss_pred CCCHHHHHHHHHHhcccHHHHhcCccchHhhhhhhhhhhhhhHHHHHHHHhChhh
Confidence 47888888888877732110 000122333331223456778888888777653
No 301
>PF14164 YqzH: YqzH-like protein
Probab=21.94 E-value=1.6e+02 Score=16.52 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=22.4
Q ss_pred hHHHHHHHhhccC-CCCccCHHHHHHHHHHh
Q 030421 108 NDIQGAFQLFDLN-GDKKISAEELMEVLRKM 137 (177)
Q Consensus 108 ~~~~~~f~~~D~~-~~g~i~~~e~~~~l~~~ 137 (177)
.-++..|+.|..| ..-.++..|++.++..+
T Consensus 8 Kmi~~~l~QYg~d~~~~pls~~E~~~L~~~i 38 (64)
T PF14164_consen 8 KMIINCLRQYGYDVECMPLSDEEWEELCKHI 38 (64)
T ss_pred HHHHHHHHHhCCcccCCCCCHHHHHHHHHHH
Confidence 3467788888766 66678888888888765
No 302
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=21.91 E-value=39 Score=19.70 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=16.3
Q ss_pred CcccHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q 030421 50 GKISQDEYNSALSVLGKGISKAEMAKSFRFI 80 (177)
Q Consensus 50 g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~ 80 (177)
|.=+..+|-.+|+.+|-..-+.-+..+++.+
T Consensus 39 ~k~~~p~fPkFLn~LGteIiEnAVefiLrSM 69 (88)
T PF15144_consen 39 GKNPEPDFPKFLNLLGTEIIENAVEFILRSM 69 (88)
T ss_pred CCCCCCchHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3444445666666666544444555555544
No 303
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=21.81 E-value=1.1e+02 Score=19.12 Aligned_cols=11 Identities=9% Similarity=0.531 Sum_probs=5.3
Q ss_pred cCHHHHHHHHH
Q 030421 125 ISAEELMEVLR 135 (177)
Q Consensus 125 i~~~e~~~~l~ 135 (177)
++..|..+++.
T Consensus 71 L~~~E~~qi~N 81 (117)
T PF03874_consen 71 LTEFEILQIIN 81 (117)
T ss_dssp S-HHHHHHHHH
T ss_pred CCHHHHHHHhc
Confidence 55555555554
No 304
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=21.63 E-value=1.3e+02 Score=18.85 Aligned_cols=15 Identities=20% Similarity=0.215 Sum_probs=8.4
Q ss_pred ccCHHHHHHHHHHhC
Q 030421 124 KISAEELMEVLRKMG 138 (177)
Q Consensus 124 ~i~~~e~~~~l~~~~ 138 (177)
.++.+|+..++...|
T Consensus 36 p~s~~eL~~~l~~~g 50 (113)
T cd03033 36 PWTAETLRPFFGDLP 50 (113)
T ss_pred CCCHHHHHHHHHHcC
Confidence 355566666665544
No 305
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=21.62 E-value=2e+02 Score=17.39 Aligned_cols=52 Identities=23% Similarity=0.266 Sum_probs=28.0
Q ss_pred CccCHHHHHHHHHHhCCCCCHHHHH---HHHHhhcCCCCCcccHHHHHHHHHhhcc
Q 030421 123 KKISAEELMEVLRKMGEKYSLDSCR---KMIRGVDADGDGLIDMDEFMTMMTRNVK 175 (177)
Q Consensus 123 g~i~~~e~~~~l~~~~~~~~~~~~~---~~~~~~d~~~~g~is~~ef~~~l~~~~~ 175 (177)
..++.+++..++...+.. ..+-+. ..++..+.+....++-++++++|..++.
T Consensus 34 ~~~~~~~l~~~~~~~~~~-~~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p~ 88 (105)
T cd02977 34 EPPTKEELKELLAKLGLG-VEDLFNTRGTPYRKLGLADKDELSDEEALELMAEHPK 88 (105)
T ss_pred CCCCHHHHHHHHHhcCCC-HHHHHhcCCchHHHcCCccccCCCHHHHHHHHHhCcC
Confidence 456677777777666521 111111 2333433332345677777777777654
No 306
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=21.54 E-value=2.7e+02 Score=24.01 Aligned_cols=58 Identities=21% Similarity=0.373 Sum_probs=40.5
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHh
Q 030421 72 EMAKSFRFIDTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM 137 (177)
Q Consensus 72 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 137 (177)
....+|......+...+..+.|..++. .+..+.+|..++...++.|+++.|+......
T Consensus 405 aA~~iF~nv~~p~~~~i~ld~~~~f~~--------~E~a~~~~slfe~~~~~~Itrs~~~~~iv~~ 462 (714)
T KOG4629|consen 405 AARKIFKNVAKPGVILIDLDDLLRFMG--------DEEAERAFSLFEGASDENITRSSFKEWIVNI 462 (714)
T ss_pred HHHHHHhccCCCCccchhhhhhhhcCC--------HHHHHHHHHhhhhhcccCccHHHHHHHHHHH
Confidence 345666666666655666666666544 3677888888887656669999998888654
No 307
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=21.50 E-value=1.4e+02 Score=15.67 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=19.8
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhhcC
Q 030421 121 GDKKISAEELMEVLRKMGEKYSLDSCRKMIRGVDA 155 (177)
Q Consensus 121 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 155 (177)
..|.|+..+|+..+. ++-.-+-.++..+|.
T Consensus 7 ~~~~itv~~~rd~lg-----~sRK~ai~lLE~lD~ 36 (50)
T PF09107_consen 7 KNGEITVAEFRDLLG-----LSRKYAIPLLEYLDR 36 (50)
T ss_dssp TTSSBEHHHHHHHHT-----S-HHHHHHHHHHHHH
T ss_pred cCCcCcHHHHHHHHC-----ccHHHHHHHHHHHhc
Confidence 368888888888882 555566666666544
No 308
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=21.48 E-value=1.4e+02 Score=15.48 Aligned_cols=45 Identities=20% Similarity=0.366 Sum_probs=33.0
Q ss_pred CcCCcchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhhCCCCCHHHHHHHHH
Q 030421 27 PRASRSNVQEMRQVFDKFDTNKDGKISQDEYNSALSVLGKGISKAEMAKSFR 78 (177)
Q Consensus 27 ~~~~~~~~~~l~~~f~~~d~~~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~ 78 (177)
..++..+...|..+|.. +.+.+..+...+...+| ++...+..-|.
T Consensus 5 ~~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~ 49 (59)
T cd00086 5 TRFTPEQLEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQ 49 (59)
T ss_pred CcCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHH
Confidence 35667778888888886 45788888888888876 56666666654
No 309
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=21.17 E-value=1.6e+02 Score=16.20 Aligned_cols=30 Identities=17% Similarity=0.378 Sum_probs=12.0
Q ss_pred cchhHHHHHHHhhccCCCCccCHHHHHHHHHHh
Q 030421 105 VKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM 137 (177)
Q Consensus 105 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 137 (177)
...+++..+|..+= +|.++..+.-.+|..+
T Consensus 15 Ls~~e~~~~~~~i~---~g~~s~~qiaAfL~al 44 (66)
T PF02885_consen 15 LSREEAKAAFDAIL---DGEVSDAQIAAFLMAL 44 (66)
T ss_dssp --HHHHHHHHHHHH---TTSS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH---cCCCCHHHHHHHHHHH
Confidence 33444444444442 2444454444444433
No 310
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=21.12 E-value=2.4e+02 Score=18.01 Aligned_cols=33 Identities=9% Similarity=0.361 Sum_probs=23.0
Q ss_pred CCCcccHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q 030421 48 KDGKISQDEYNSALSVLGKGISKAEMAKSFRFI 80 (177)
Q Consensus 48 ~~g~l~~~e~~~~l~~l~~~~~~~~~~~~~~~~ 80 (177)
..|.++.+++..-+..-+..++..++..++..+
T Consensus 25 ~~~~~tl~~Ia~~i~~~~s~~t~~di~~vl~~~ 57 (124)
T PF14848_consen 25 SSGTLTLEDIAEEIAKEGSTLTRADIEAVLNAL 57 (124)
T ss_pred ecCccCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 457788888877666556677777777666554
No 311
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=21.04 E-value=2.1e+02 Score=17.44 Aligned_cols=29 Identities=17% Similarity=0.156 Sum_probs=17.6
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 030421 124 KISAEELMEVLRKMGEKYSLDSCRKMIRG 152 (177)
Q Consensus 124 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 152 (177)
.|+.+++.++-+-....+++++++.+...
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~~~~ 30 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKFATQ 30 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHHHHH
Confidence 46666666666655556666666555443
No 312
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=20.90 E-value=2.1e+02 Score=17.38 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=7.7
Q ss_pred CcccHHHHHHHHHhhc
Q 030421 159 GLIDMDEFMTMMTRNV 174 (177)
Q Consensus 159 g~is~~ef~~~l~~~~ 174 (177)
|.|+-+||...+....
T Consensus 38 ~~i~~EeF~~~Lq~~l 53 (92)
T smart00549 38 GTITAEEFTSRLQEAL 53 (92)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4455555555444433
No 313
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=20.76 E-value=3.5e+02 Score=21.27 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=21.6
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHhhCCCC
Q 030421 40 VFDKFDTNKDGKISQDEYNSALSVLGKGI 68 (177)
Q Consensus 40 ~f~~~d~~~~g~l~~~e~~~~l~~l~~~~ 68 (177)
+|+.+|.+....++.++-..++..+|.+.
T Consensus 162 vFDI~d~~t~~~L~~~er~~l~e~yglp~ 190 (374)
T TIGR01209 162 LFDIREGKTNRSLPVEERLELAEKYGLPH 190 (374)
T ss_pred EEEEEECCCCccCCHHHHHHHHHHCCCCc
Confidence 34445556677999999999999887653
No 314
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.53 E-value=3.6e+02 Score=19.97 Aligned_cols=83 Identities=19% Similarity=0.240 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHhh-cCCCCCcccHHHHHHHHHhccccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHhCCCCCHHH
Q 030421 67 GISKAEMAKSFRFI-DTDKDGYIDFKEFIEMMHDMGDNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKMGEKYSLDS 145 (177)
Q Consensus 67 ~~~~~~~~~~~~~~-d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~ 145 (177)
..+...+..+|..+ |+..+..|..+-...++..+...+.+...+--+++.- ...-|..+++||..-+..++ ..+.+.
T Consensus 60 ~~s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~-A~~m~~Fsr~ef~~g~~~l~-~dS~d~ 137 (260)
T KOG3077|consen 60 RVSEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLG-AATMCEFSREEFLKGMTALG-CDSIDK 137 (260)
T ss_pred cccHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhc-cchhhhhhHHHHHHHHHHcC-CCcHHH
Confidence 45556666666655 4444446766666666665555555444454555443 55567777777776666555 223344
Q ss_pred HHHHHH
Q 030421 146 CRKMIR 151 (177)
Q Consensus 146 ~~~~~~ 151 (177)
+...+.
T Consensus 138 lq~~l~ 143 (260)
T KOG3077|consen 138 LQQRLD 143 (260)
T ss_pred HHHHHH
Confidence 443333
No 315
>KOG4064 consensus Cysteine dioxygenase CDO1 [Amino acid transport and metabolism]
Probab=20.48 E-value=1.5e+02 Score=19.89 Aligned_cols=16 Identities=6% Similarity=0.289 Sum_probs=7.0
Q ss_pred CCHHHHHHHHHhhcCC
Q 030421 141 YSLDSCRKMIRGVDAD 156 (177)
Q Consensus 141 ~~~~~~~~~~~~~d~~ 156 (177)
.+.+++..++..+..|
T Consensus 30 vnveeV~~lM~sYkSn 45 (196)
T KOG4064|consen 30 VNVEEVMKLMASYKSN 45 (196)
T ss_pred cCHHHHHHHHHHhhcC
Confidence 3444444444444333
No 316
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=20.02 E-value=2.7e+02 Score=18.21 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=26.0
Q ss_pred CCcccHHHHHHHHHhcc-------ccccchhHHHHHHHhhccCCCCccCHHHHHHHHHHh
Q 030421 85 DGYIDFKEFIEMMHDMG-------DNRVKKNDIQGAFQLFDLNGDKKISAEELMEVLRKM 137 (177)
Q Consensus 85 ~g~i~~~ef~~~~~~~~-------~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 137 (177)
+|.|+..+|+..+..-. .......-+..+|+.+ -|....+..|...+..-+
T Consensus 42 ng~IsVreFVr~La~S~~yr~~f~~~~~~~R~iEl~~khl--LGR~p~~~~Ei~~~~~i~ 99 (131)
T PF00427_consen 42 NGQISVREFVRALAKSELYRKRFFEPNSNYRFIELAFKHL--LGRAPYNQAEISAYSQIL 99 (131)
T ss_dssp TTSS-HHHHHHHHHTSHHHHHHHTTTS-HHHHHHHHHHHH--CSS--SSHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHcCHHHHHHHcccccchHHHHHHHHHH--hCCCCCCHHHHHHHHHHH
Confidence 78899999999886311 1112223455555554 244455566665555443
Done!