BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030422
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WFF|2 Chain 2, Equine Rhinitis A Virus
Length = 230
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 16/129 (12%)
Query: 14 PATLGSVWNRLDPTFRSECTVEAGTWEEKSLNKWA------SDRIKELLTSVGSVEFSGG 67
P+T+ RL PT T + G W + A SD++K++ G
Sbjct: 44 PSTVSDPVTRLGPTLSRHYTFKVGEWPHSQSHGHAWICPLPSDKLKKM----------GS 93
Query: 68 KAEITEVSNCVGDAFLVTVRNKKRVGYNYELTLKVRGEWNIREEKKMVKGHIDIPEFSFG 127
E+ + + V + + V V+ ++ L + E+ EK + ++ P +++
Sbjct: 94 FHEVVKAHHLVKNGWDVVVQVNASFAHSGALCVAAVPEYEHTHEKALKWSELEEPAYTYQ 153
Query: 128 ELDDLQMQV 136
+L Q+
Sbjct: 154 QLSVFPHQL 162
>pdb|2WS9|2 Chain 2, Equine Rhinitis A Virus At Low Ph
pdb|2XBO|2 Chain 2, Equine Rhinitis A Virus In Complex With Its Sialic Acid
Receptor
Length = 230
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 16/129 (12%)
Query: 14 PATLGSVWNRLDPTFRSECTVEAGTWEEKSLNKWA------SDRIKELLTSVGSVEFSGG 67
P+T+ RL PT T + G W + A SD++K++ G
Sbjct: 44 PSTVSDPVTRLGPTLSRHYTFKVGEWPHSQSHGHAWICPLPSDKLKKM----------GS 93
Query: 68 KAEITEVSNCVGDAFLVTVRNKKRVGYNYELTLKVRGEWNIREEKKMVKGHIDIPEFSFG 127
E+ + + V + + V V+ ++ L + E+ EK + ++ P +++
Sbjct: 94 FHEVVKAHHLVKNGWDVVVQVNASFAHSGALCVAAVPEYEHTHEKALKWSELEEPAYTYQ 153
Query: 128 ELDDLQMQV 136
+L Q+
Sbjct: 154 QLSVFPHQL 162
>pdb|3OPY|I Chain I, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|J Chain J, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|K Chain K, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|L Chain L, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 351
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 97 ELTLKVRGEWNIREEKKMVKGHIDIPEFSFGELD 130
EL K G WNI +KK +G+I I + S G LD
Sbjct: 319 ELIFKYVGRWNICYQKKFHQGNISIHQIS-GYLD 351
>pdb|2FZ4|A Chain A, Crystal Structure Of The N-Terminal Half Of Archaeoglobus
Fulgidus Xpb
Length = 237
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 14/154 (9%)
Query: 26 PTFRSECTVEAGTWEEKSLNKWASDRIKELLTSVGSVEFSGGKAEITEVSN---CVGDAF 82
P F +E ++ ++EK+L +W D+ ++ GS + A I E+S V
Sbjct: 86 PYFDAEISLR--DYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTL 143
Query: 83 LVTVRNKKRVGYNYELTLKVRGEWN--IREEKKMVKGHIDIPEFSFGELDDLQMQVRISE 140
+ + K+R+G E + GE++ I+E K + D + +L + M + E
Sbjct: 144 ALAEQWKERLGIFGE---EYVGEFSGRIKELKPLTVSTYDSAYVNAEKLGNRFMLLIFDE 200
Query: 141 EKDLSKEDKLQISQDLKMFLQPVREKL-LLFEQE 173
L E +QI+Q M + P R L FE+E
Sbjct: 201 VHHLPAESYVQIAQ---MSIAPFRLGLTATFERE 231
>pdb|2NQW|A Chain A, Structure Of The Transporter Associated Domain From
Pg_0272, A Cbs Domain Protein From Porphyromonas
Gingivalis
Length = 93
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 97 ELTLKVRGEWNIREEKKM----VKGHIDIPEFSFGELDD 131
EL KV G+ + E K V+ ++D+PE +FGEL D
Sbjct: 6 ELPFKVLGDGSYLFEGKTSLSDVRHYLDLPENAFGELGD 44
>pdb|2FWR|A Chain A, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|B Chain B, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|C Chain C, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|D Chain D, Structure Of Archaeoglobus Fulgidis Xpb
Length = 472
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 14/154 (9%)
Query: 26 PTFRSECTVEAGTWEEKSLNKWASDRIKELLTSVGSVEFSGGKAEITEVSN---CVGDAF 82
P F +E ++ ++EK+L +W D+ ++ GS + A I E+S V
Sbjct: 86 PYFDAEISLR--DYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTL 143
Query: 83 LVTVRNKKRVGYNYELTLKVRGEWN--IREEKKMVKGHIDIPEFSFGELDDLQMQVRISE 140
+ + K+R+G E + GE++ I+E K + D + +L + M + E
Sbjct: 144 ALAEQWKERLGIFGEEYV---GEFSGRIKELKPLTVSTYDSAYVNAEKLGNRFMLLIFDE 200
Query: 141 EKDLSKEDKLQISQDLKMFLQPVREKL-LLFEQE 173
L E +QI+Q M + P R L FE+E
Sbjct: 201 VHHLPAESYVQIAQ---MSIAPFRLGLTATFERE 231
>pdb|3N72|A Chain A, Crystal Structure Of Aha-1 From Plasmodium Falciparum,
Pfc0270w
pdb|3N72|B Chain B, Crystal Structure Of Aha-1 From Plasmodium Falciparum,
Pfc0270w
Length = 164
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 15/104 (14%)
Query: 41 EKSLNKWASDRIKELLTSVGSVEFSGGKAEITEVSNCV---GDAFLVTVRNKKRVGYNYE 97
E++ NKWA IK L+++ +E K ++T + + G+A V++R K++ ++E
Sbjct: 19 ERNYNKWAESYIKYNLSNL-KIE----KEDLTIYFDNLQVSGNA-CVSIRKGKQIN-SFE 71
Query: 98 LTLKVRGEW---NIREEKKMVKGHIDIPEFSFGELDDLQMQVRI 138
+K EW +E K G ++IP+FS L++ + I
Sbjct: 72 YIIKF--EWLYSKKKEGKDYFGGSVEIPDFSTFSLEENDYAINI 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,265,732
Number of Sequences: 62578
Number of extensions: 205017
Number of successful extensions: 344
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 341
Number of HSP's gapped (non-prelim): 13
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)