Query 030422
Match_columns 177
No_of_seqs 105 out of 329
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 13:29:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030422.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030422hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09229 Aha1_N: Activator of 100.0 3.7E-37 7.9E-42 238.2 13.6 130 41-176 1-133 (137)
2 KOG2936 Uncharacterized conser 100.0 3.4E-32 7.4E-37 232.5 13.0 136 34-176 8-145 (301)
3 COG5580 Activator of HSP90 ATP 99.9 1.1E-27 2.4E-32 197.8 9.6 129 34-176 6-136 (272)
4 TIGR02610 PHA_gran_rgn putativ 57.4 34 0.00074 24.7 5.2 40 115-175 50-90 (91)
5 PF09650 PHA_gran_rgn: Putativ 53.8 39 0.00084 24.1 5.0 40 114-173 46-85 (87)
6 PF05570 DUF765: Circovirus pr 52.0 6.2 0.00013 22.4 0.5 19 3-21 10-28 (29)
7 PF09862 DUF2089: Protein of u 40.9 11 0.00024 28.6 0.4 62 109-175 16-78 (113)
8 PHA02447 hypothetical protein 37.1 7.9 0.00017 27.0 -0.8 20 23-42 41-64 (86)
9 PF09905 DUF2132: Uncharacteri 28.3 43 0.00093 22.9 1.7 12 45-56 52-63 (64)
10 COG3427 Carbon monoxide dehydr 28.1 3E+02 0.0065 21.7 11.9 110 50-176 24-141 (146)
11 PF06145 Corona_NS1: Coronavir 28.1 27 0.00059 19.8 0.6 14 1-14 9-22 (29)
12 PF02886 LBP_BPI_CETP_C: LBP / 25.1 3.7E+02 0.0081 21.7 14.2 82 77-168 120-205 (238)
13 PHA00540 hypothetical protein 24.4 81 0.0018 30.1 3.3 46 82-127 301-356 (715)
14 PF05596 Taeniidae_ag: Taeniid 24.1 1.4E+02 0.0029 20.4 3.6 20 157-176 44-63 (64)
15 cd07823 SRPBCC_5 Ligand-bindin 22.1 3.3E+02 0.0071 20.0 7.7 21 157-177 123-143 (146)
16 COG4801 Predicted acyltransfer 20.1 1.7E+02 0.0038 25.3 4.2 50 69-123 63-115 (277)
No 1
>PF09229 Aha1_N: Activator of Hsp90 ATPase, N-terminal; InterPro: IPR015310 This domain is predominantly found in the protein 'Activator of Hsp90 ATPase', it adopts a secondary structure consisting of an N-terminal alpha-helix leading into a four-stranded meandering antiparallel beta-sheet, followed by a C-terminal alpha-helix. The two helices are packed together, with the beta-sheet curving around them. They bind to the molecular chaperone HSP82 and stimulate its ATPase activity []. ; GO: 0001671 ATPase activator activity, 0051087 chaperone binding, 0005737 cytoplasm; PDB: 1USV_F 1USU_B 3N72_A.
Probab=100.00 E-value=3.7e-37 Score=238.25 Aligned_cols=130 Identities=36% Similarity=0.551 Sum_probs=114.3
Q ss_pred ecCCChhHHHHHHHHhccCcee-eecCceEEEEeeeeeEeEEEEEeecCeeEEEEEEEEEEEEEEEEeecCCcceEEEEE
Q 030422 41 EKSLNKWASDRIKELLTSVGSV-EFSGGKAEITEVSNCVGDAFLVTVRNKKRVGYNYELTLKVRGEWNIREEKKMVKGHI 119 (177)
Q Consensus 41 EKd~t~Wak~~l~elL~~~~~v-~~~~~~~~i~~V~~v~GdAsv~~rKGK~i~~ydl~i~l~w~~~~~~~~~~~~~~G~i 119 (177)
||||++||++||+++|.++. + +++++.++|++|++|+|||+|++||||+|++|||+|+|+|+|... ++++..++|+|
T Consensus 1 EKd~t~Wak~~l~elL~~~~-~~~~~~~~v~v~~v~~v~GdA~v~~rKGK~i~~fd~~i~l~w~~~~~-~~~~~~~~G~i 78 (137)
T PF09229_consen 1 EKDCTPWAKDRLKELLPGLS-VPEDGDGSVKVTSVKSVEGDASVNQRKGKKIFIFDLKIKLKWEGKLK-DGEEKEVKGTI 78 (137)
T ss_dssp EEETHHHHHHHHHHHHCT-E-C-CSSSCEEEEEEEEEEEEEEEEEEETTCEEEEEEEEEEEEEEEEEC-TTSSEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhccCE-eccCCCcEEEEEEeeeeceEEEEEEEcCcEEEEEEEEEEEEEEEEEc-CCCCcEEEEEE
Confidence 79999999999999999999 8 888899999999999999999999999999999999999999852 34456799999
Q ss_pred EcccccC-CCCCccEEEEEEecCCCcchhhhHHHHHHH-hhcHHHHHHHHHHHHHHHhh
Q 030422 120 DIPEFSF-GELDDLQMQVRISEEKDLSKEDKLQISQDL-KMFLQPVREKLLLFEQELKD 176 (177)
Q Consensus 120 ~ipe~s~-~~~dd~ei~v~~~~~~~~~~~~~~~l~~~~-~~~~~~ir~~l~~f~~eLk~ 176 (177)
+|||||+ ++.+||+|.|++++..+..++ ++.+| +.++|+||++|.+|+++|++
T Consensus 79 ~ipe~s~d~~~~d~~~~v~~~~~~~~~~~----~~~~v~~~~~~~i~~~l~~f~~~L~~ 133 (137)
T PF09229_consen 79 EIPEFSSDNDDDDYEFEVTVKDDSPESDA----LKDAVRKEGVPQIREKLEQFVKELKE 133 (137)
T ss_dssp EEEEEECCCCTTT---EEEETT-SCCCCC----HHHCCCCHCHHHHHHHHCCHHHHHHH
T ss_pred EecccCCCCCccceEEEEEEcCCCccHHH----HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999 688999999999887765444 88999 99999999999999999986
No 2
>KOG2936 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.98 E-value=3.4e-32 Score=232.52 Aligned_cols=136 Identities=24% Similarity=0.297 Sum_probs=126.1
Q ss_pred ccCCeeeecCCChhHHHHHHHHhccCceeeecCceEEEEeeeeeEeEEEEEeecCeeEEEEEEEEEEEEEEEEeecCCcc
Q 030422 34 VEAGTWEEKSLNKWASDRIKELLTSVGSVEFSGGKAEITEVSNCVGDAFLVTVRNKKRVGYNYELTLKVRGEWNIREEKK 113 (177)
Q Consensus 34 vNnwhWeEKd~t~Wak~~l~elL~~~~~v~~~~~~~~i~~V~~v~GdAsv~~rKGK~i~~ydl~i~l~w~~~~~~~~~~~ 113 (177)
||||||.||||++||+++|.++|.+++ ...++..+++++|++++|||.|++||||+|++|||++++.|.|. .++++.
T Consensus 8 ~nNwHW~ekn~~~WS~e~f~q~ls~~~-~~s~~~~~~i~~vs~~~ge~~vn~RKgK~I~~f~l~i~~~~~G~--~~~s~v 84 (301)
T KOG2936|consen 8 PNNWHWVEKNCSPWSKEYLNQKLSGVS-SLSGPFSCKITEVSSIDGEARVNQRKGKLISLFDLSIELNFEGG--EDGSGV 84 (301)
T ss_pred CccceeccccchhhhhHHHHhhhcccc-cccCcceEEEeeeEeccccccccccccceEEEEEeEEEEEEecc--ccCCcc
Confidence 799999999999999999999999998 66666889999999999999999999999999999999999994 267888
Q ss_pred eEEEEEEcccccC-CCCCccEEEEEEecCCCcchhhhHHHHHHH-hhcHHHHHHHHHHHHHHHhh
Q 030422 114 MVKGHIDIPEFSF-GELDDLQMQVRISEEKDLSKEDKLQISQDL-KMFLQPVREKLLLFEQELKD 176 (177)
Q Consensus 114 ~~~G~i~ipe~s~-~~~dd~ei~v~~~~~~~~~~~~~~~l~~~~-~~~~~~ir~~l~~f~~eLk~ 176 (177)
.++|+++|||+|+ ++.+|+++.|++.+..+.... ++.+| ++|+|.|++.+..|+++|+.
T Consensus 85 ~~~G~ieiP~lS~en~~~d~e~~vsi~~~~~~~~~----l~~l~k~eg~~~i~e~~~~y~~~L~~ 145 (301)
T KOG2936|consen 85 KYKGKIEIPNLSDENEVSDDEFDVSIFKKGPEGYT----LKELVKKEGIPKIREVMGKYIRELKR 145 (301)
T ss_pred ccCceecccccchhccCcCceEeeeeccCCcchhH----HHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 9999999999999 899999999999988876555 88888 99999999999999999974
No 3
>COG5580 Activator of HSP90 ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.1e-27 Score=197.78 Aligned_cols=129 Identities=22% Similarity=0.303 Sum_probs=106.2
Q ss_pred ccCCeeeecCCChhHHHHHHHHhccCceee--ecCceEEEEeeeeeEeEEEEEeecCeeEEEEEEEEEEEEEEEEeecCC
Q 030422 34 VEAGTWEEKSLNKWASDRIKELLTSVGSVE--FSGGKAEITEVSNCVGDAFLVTVRNKKRVGYNYELTLKVRGEWNIREE 111 (177)
Q Consensus 34 vNnwhWeEKd~t~Wak~~l~elL~~~~~v~--~~~~~~~i~~V~~v~GdAsv~~rKGK~i~~ydl~i~l~w~~~~~~~~~ 111 (177)
+|||||.+|||..|||+||++.|+++. .. .+...++|++|++|+||+.|++||||+||+|||.|++.++|+ +++
T Consensus 6 PnNwHWvdkdc~~WakEyfn~kL~s~~-a~s~egk~~akItqvsSieGD~~VsqRKgKvI~lfDlkIsme~kge---dgd 81 (272)
T COG5580 6 PNNWHWVDKDCSAWAKEYFNEKLKSRG-AESHEGKVMAKITQVSSIEGDSNVSQRKGKVICLFDLKISMECKGE---DGD 81 (272)
T ss_pred CCccccccccccHhHHHHHhhhhcccc-cccccCcceEEEEEeeeecccchhhhccCceeEEEEEEEEEEEEec---cCC
Confidence 489999999999999999999999988 55 334469999999999999999999999999999999999997 788
Q ss_pred cceEEEEEEcccccCCCCCccEEEEEEecCCCcchhhhHHHHHHHhhcHHHHHHHHHHHHHHHhh
Q 030422 112 KKMVKGHIDIPEFSFGELDDLQMQVRISEEKDLSKEDKLQISQDLKMFLQPVREKLLLFEQELKD 176 (177)
Q Consensus 112 ~~~~~G~i~ipe~s~~~~dd~ei~v~~~~~~~~~~~~~~~l~~~~~~~~~~ir~~l~~f~~eLk~ 176 (177)
+..+.|++++||++++. .|+++-- ......+. |.+ .+++|++|+.|.+|.+.|..
T Consensus 82 g~~a~gsi~vpE~a~d~-fDi~ifs---~~fe~~eg----LvR--ee~lpk~rq~l~~f~~vllk 136 (272)
T COG5580 82 GCGARGSISVPEKAEDM-FDIEIFS---GFFEEMEG----LVR--EEVLPKGRQVLDVFREVLLK 136 (272)
T ss_pred cccccccEecchhhccc-ccchhhh---chhhhhhh----hHH--HHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999852 3333321 11111111 222 88999999999999999864
No 4
>TIGR02610 PHA_gran_rgn putative polyhydroxyalkanoic acid system protein. All members of this family are encoded by genes polyhydroxyalkanoic acid (PHA) biosynthesis and utilization genes, including proteins at found at the surface of PHA granules. Examples so far are found in the Pseudomonales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=57.43 E-value=34 Score=24.71 Aligned_cols=40 Identities=8% Similarity=0.179 Sum_probs=27.2
Q ss_pred EEEEEEcccccCCCCCccEEEEEEecCCCcchhhhHHHHHHH-hhcHHHHHHHHHHHHHHHh
Q 030422 115 VKGHIDIPEFSFGELDDLQMQVRISEEKDLSKEDKLQISQDL-KMFLQPVREKLLLFEQELK 175 (177)
Q Consensus 115 ~~G~i~ipe~s~~~~dd~ei~v~~~~~~~~~~~~~~~l~~~~-~~~~~~ir~~l~~f~~eLk 175 (177)
++|++.+ .++.+.+++.+ + .+ ..|.+.|+..+.++...+.
T Consensus 50 v~G~l~V------~~d~v~v~v~L----g-----------~Ll~~f~~~Ie~~I~~~Ld~~l 90 (91)
T TIGR02610 50 VDGAVHL------GPQSIRVTAEL----G-----------MLLSAMSGTIKSEIERALDKAL 90 (91)
T ss_pred eeEEEEE------cCCeEEEEEEh----H-----------HHHHHHHHHHHHHHHHHHHHhh
Confidence 7899998 33667777764 2 23 6677778877777776653
No 5
>PF09650 PHA_gran_rgn: Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn); InterPro: IPR013433 Proteins in this entry are encoded by genes involved in either polyhydroxyalkanoic acid (PHA) biosynthesis or utilisation, including proteins at found at the surface of PHA granules. These proteins have so far been predominantly found in the Pseudomonadales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=53.81 E-value=39 Score=24.08 Aligned_cols=40 Identities=15% Similarity=0.330 Sum_probs=23.8
Q ss_pred eEEEEEEcccccCCCCCccEEEEEEecCCCcchhhhHHHHHHHhhcHHHHHHHHHHHHHH
Q 030422 114 MVKGHIDIPEFSFGELDDLQMQVRISEEKDLSKEDKLQISQDLKMFLQPVREKLLLFEQE 173 (177)
Q Consensus 114 ~~~G~i~ipe~s~~~~dd~ei~v~~~~~~~~~~~~~~~l~~~~~~~~~~ir~~l~~f~~e 173 (177)
.++|++.| .++.+.+++.+ +. +. +.|...|...+.++...
T Consensus 46 gv~G~l~V------~~d~v~l~v~L----g~-------Ll---~~f~~~Ie~~I~~~Ld~ 85 (87)
T PF09650_consen 46 GVDGTLDV------ADDHVRLEVKL----GF-------LL---SPFKGKIEQEIEKNLDK 85 (87)
T ss_pred CceEEEEE------cCCEEEEEEEc----HH-------HH---HHHHHHHHHHHHHHHHh
Confidence 37899998 33566666664 21 22 45566666666665544
No 6
>PF05570 DUF765: Circovirus protein of unknown function (DUF765); InterPro: IPR008484 This family consists of several short (27-30aa) porcine and bovine circovirus ORF6 proteins of unknown function.
Probab=52.03 E-value=6.2 Score=22.39 Aligned_cols=19 Identities=42% Similarity=0.698 Sum_probs=14.1
Q ss_pred CccccccCCCCCCcccccc
Q 030422 3 SPDDILSNKSQPATLGSVW 21 (177)
Q Consensus 3 ~~~~~~~~~~~~~~~~S~W 21 (177)
.|.||||..+|+..---.|
T Consensus 10 apsdils~~pqs~rppgrw 28 (29)
T PF05570_consen 10 APSDILSSKPQSKRPPGRW 28 (29)
T ss_pred CcHHHHhcCccccCCCCCC
Confidence 3789999999987654444
No 7
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=40.90 E-value=11 Score=28.57 Aligned_cols=62 Identities=18% Similarity=0.288 Sum_probs=39.4
Q ss_pred cCCcceEEEEEEcccccCCCCCccEEEEE-EecCCCcchhhhHHHHHHHhhcHHHHHHHHHHHHHHHh
Q 030422 109 REEKKMVKGHIDIPEFSFGELDDLQMQVR-ISEEKDLSKEDKLQISQDLKMFLQPVREKLLLFEQELK 175 (177)
Q Consensus 109 ~~~~~~~~G~i~ipe~s~~~~dd~ei~v~-~~~~~~~~~~~~~~l~~~~~~~~~~ir~~l~~f~~eLk 175 (177)
...+..++|.+++|.|+.-+.++.+|--. +....... .+.+.+.---|.+|..|++.++.|.
T Consensus 16 ~~C~t~i~G~F~l~~~~~L~~E~~~Fi~~Fi~~rGnlK-----e~e~~lgiSYPTvR~rLd~ii~~lg 78 (113)
T PF09862_consen 16 PSCGTEIEGEFELPWFARLSPEQLEFIKLFIKNRGNLK-----EMEKELGISYPTVRNRLDKIIEKLG 78 (113)
T ss_pred CCCCCEEEeeeccchhhcCCHHHHHHHHHHHHhcCCHH-----HHHHHHCCCcHHHHHHHHHHHHHhC
Confidence 56778999999999999954466554222 22333310 1222223337999999999988774
No 8
>PHA02447 hypothetical protein
Probab=37.06 E-value=7.9 Score=26.95 Aligned_cols=20 Identities=30% Similarity=0.140 Sum_probs=16.5
Q ss_pred CCCCCCccccc----ccCCeeeec
Q 030422 23 RLDPTFRSECT----VEAGTWEEK 42 (177)
Q Consensus 23 ~gdprwiv~~r----vNnwhWeEK 42 (177)
.||=||.||+. |-+|-+||.
T Consensus 41 agdfrwsvedntcarvlawgyeet 64 (86)
T PHA02447 41 AGDFRWSVEDNTCARVLAWGYEET 64 (86)
T ss_pred ccceeeeeccchHHHHHHhhhHHH
Confidence 58999999987 788888764
No 9
>PF09905 DUF2132: Uncharacterized conserved protein (DUF2132); InterPro: IPR018668 This entry contains proteins that have no known function. ; PDB: 2JVW_A.
Probab=28.26 E-value=43 Score=22.91 Aligned_cols=12 Identities=25% Similarity=0.858 Sum_probs=10.1
Q ss_pred ChhHHHHHHHHh
Q 030422 45 NKWASDRIKELL 56 (177)
Q Consensus 45 t~Wak~~l~elL 56 (177)
|+||+++.+++-
T Consensus 52 TpWAR~KVE~lY 63 (64)
T PF09905_consen 52 TPWAREKVENLY 63 (64)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHhHHHHHHHhc
Confidence 799999998763
No 10
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=28.14 E-value=3e+02 Score=21.70 Aligned_cols=110 Identities=15% Similarity=0.209 Sum_probs=51.0
Q ss_pred HHHHHHhccCceeeecCc--eEEEE-eeeeeEeEEEEEeecCeeEEEE----EEEEEEEEEEEEeecCCcceEEEEEEcc
Q 030422 50 DRIKELLTSVGSVEFSGG--KAEIT-EVSNCVGDAFLVTVRNKKRVGY----NYELTLKVRGEWNIREEKKMVKGHIDIP 122 (177)
Q Consensus 50 ~~l~elL~~~~~v~~~~~--~~~i~-~V~~v~GdAsv~~rKGK~i~~y----dl~i~l~w~~~~~~~~~~~~~~G~i~ip 122 (177)
+++...|++++.++..+. .+++. .|..+.|+ -+|+.++.+ ...++++-+|- ..+..+.+++.+
T Consensus 24 e~~a~ciPG~qs~e~~g~e~~~~v~l~ig~l~~~-----~~g~~~~~~v~~~~~~~~i~g~G~----~~~g~~~~~~~v- 93 (146)
T COG3427 24 EQVAACIPGVQSVETNGDEYTAKVKLKIGPLKGT-----FSGRVRFVNVDEPPRSITINGSGG----GAAGFADGTVDV- 93 (146)
T ss_pred HHHHhhcCCcceeeecCCeEEEEEEEeecceeEE-----EEEEEEEccccCCCcEEEEEeecc----cccceeeeeeEE-
Confidence 578889999886664443 33332 44444533 344555555 23444444441 122334555555
Q ss_pred cccCCCCCccEEEEEEecCCCcchhhhHHHHHHH-hhcHHHHHHHHHHHHHHHhh
Q 030422 123 EFSFGELDDLQMQVRISEEKDLSKEDKLQISQDL-KMFLQPVREKLLLFEQELKD 176 (177)
Q Consensus 123 e~s~~~~dd~ei~v~~~~~~~~~~~~~~~l~~~~-~~~~~~ir~~l~~f~~eLk~ 176 (177)
.+-... +...++.....+-.. . +.+.= +.+-+..+.-+.+|.+-|.+
T Consensus 94 ~l~~~g-~gt~v~w~~~~~~gg--~----laqlGsr~i~~~~~kli~~~~~~l~~ 141 (146)
T COG3427 94 QLEPSG-EGTRVNWFADANVGG--K----LAQLGSRLIDSVARKLINRFFDCLSS 141 (146)
T ss_pred EEEEcC-CCcEEEEEEEccccH--H----HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 222211 225556655443221 0 22211 33444555556666665543
No 11
>PF06145 Corona_NS1: Coronavirus nonstructural protein NS1; InterPro: IPR009314 One of the members of this family is a 4.9 kDa proteins, encoded by Bovine coronavirus NS1 [].
Probab=28.05 E-value=27 Score=19.85 Aligned_cols=14 Identities=43% Similarity=0.686 Sum_probs=10.5
Q ss_pred CCCccccccCCCCC
Q 030422 1 MLSPDDILSNKSQP 14 (177)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (177)
.|.||||+-+..+.
T Consensus 9 ll~pddilhp~nhv 22 (29)
T PF06145_consen 9 LLAPDDILHPFNHV 22 (29)
T ss_pred ecCcccccCcccce
Confidence 37899999876554
No 12
>PF02886 LBP_BPI_CETP_C: LBP / BPI / CETP family, C-terminal domain; InterPro: IPR001124 This entry represents the C-terminal domain found in several lipid-binding serum glycoproteins. The N- and C-terminal domains share a similar two-layer alpha/beta structure, but they show little sequence identity. Proteins containing this C-terminal domain include: Bactericidal permeability-increasing protein (BPI) Lipopolysaccharide-binding protein (LBP) Cholesteryl ester transfer protein (CETP) Phospholipid transfer protein (PLTP) Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) Bactericidal permeability-increasing protein (BPI) is a potent antimicrobial protein of 456 residues that binds to and neutralises lipopolysaccharides from the outer membrane of Gram-negative bacteria []. BPI contains two domains that adopt the same structural fold, even though they have little sequence similarity []. Lipopolysaccharide-binding protein (LBP) is an endotoxin-binding protein that is closely related to, and functions in a co-ordinated manner with BPI to facilitate an integrated host response to invading Gram-negative bacteria []. Cholesteryl ester transfer protein (CETP) is a glycoprotein that facilitates the transfer of lipids (cholesteryl esters and triglycerides) between the different lipoproteins that transport them through plasma, including HDL, LDL, VLDL and chylomicrons. These lipoproteins shield the lipids from water by encapsulating them within a coating of polar lipids and proteins []. Phospholipid transfer protein (PLTP) exchanges phospholipids between lipoproteins and remodels high-density lipoproteins (HDLs) []. Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) is a potential host defensive protein that is secreted from the submucosal gland to the saliva and nasal lavage fluid. PLUNC aapears to be a secreted product of neutrophil granules that participates in an aspect of the inflammatory response that contributes to host defence []. Short palate, lung and nasal epithelium clone 1 (SPLUNC1) may bind the lipopolysaccharide of Gram-negative nanobacteria, thereby playing an important role in the host defence of nasopharyngeal epithelium [].; GO: 0008289 lipid binding; PDB: 2OBD_A 1EWF_A 1BP1_A.
Probab=25.09 E-value=3.7e+02 Score=21.74 Aligned_cols=82 Identities=11% Similarity=0.150 Sum_probs=46.0
Q ss_pred eEeEEEEE--eecCeeEEEEEEEEEEEEEEEEeecCCcceEEEEEEcccccCCCCCccEEEEEEecCCCcchhhhHHHH-
Q 030422 77 CVGDAFLV--TVRNKKRVGYNYELTLKVRGEWNIREEKKMVKGHIDIPEFSFGELDDLQMQVRISEEKDLSKEDKLQIS- 153 (177)
Q Consensus 77 v~GdAsv~--~rKGK~i~~ydl~i~l~w~~~~~~~~~~~~~~G~i~ipe~s~~~~dd~ei~v~~~~~~~~~~~~~~~l~- 153 (177)
+.+++.+. ...++...+|.+++.+...+++...+ ..+.|++++.. +.++..-..-........+.+.
T Consensus 120 ~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~i~~--~~l~~~~~l~~--------~~~~~~~S~ig~~~~~~l~~~l~ 189 (238)
T PF02886_consen 120 LSGSVEVFVVPPNSSKVPLFSLNVDTSADVQLSISN--NKLTGSLSLDK--------FDLSLVSSSIGPFDVSSLEFLLN 189 (238)
T ss_dssp EEEEEEEEEE-TTCGCEEEEEEEEEEEEEEEEEEET--TEEEEEEEEEE--------EEEEEEEECTSS--GHHHHHHHH
T ss_pred EEEEEEEEEecCCCceEEEEEEEEEEEEEEEEEEeC--CEEEEEEeccc--------EEEEEecCCcCccchHHHHHHHH
Confidence 34444444 44567788888888888887754433 45889888844 3343333333222222222233
Q ss_pred HHH-hhcHHHHHHHHH
Q 030422 154 QDL-KMFLQPVREKLL 168 (177)
Q Consensus 154 ~~~-~~~~~~ir~~l~ 168 (177)
..+ ..+.|.|.++|+
T Consensus 190 ~~~~~~~~p~lN~~L~ 205 (238)
T PF02886_consen 190 SILKEVLLPKLNKKLA 205 (238)
T ss_dssp HHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 345 566788887775
No 13
>PHA00540 hypothetical protein
Probab=24.41 E-value=81 Score=30.06 Aligned_cols=46 Identities=11% Similarity=0.224 Sum_probs=31.2
Q ss_pred EEEeecCeeEEEEEEEEEEEEEEE----------EeecCCcceEEEEEEcccccCC
Q 030422 82 FLVTVRNKKRVGYNYELTLKVRGE----------WNIREEKKMVKGHIDIPEFSFG 127 (177)
Q Consensus 82 sv~~rKGK~i~~ydl~i~l~w~~~----------~~~~~~~~~~~G~i~ipe~s~~ 127 (177)
.--+.=|.+|.+|||+..=....+ +++++....++|++++.++..+
T Consensus 301 enpnkvgtkriifdfe~vdeldvknikkaiyrmiltvdeanliisgslelnninnd 356 (715)
T PHA00540 301 ENPNKVGTKRIIFDFETVDELDVKNIKKAIYRMILTVDEANLIISGSLELNNINND 356 (715)
T ss_pred CCCcccCceEEEEeeecchhhhhhhHHHHHHHHheeecccceEEecceEecCcCCc
Confidence 334566999999999874333211 1135556779999999988764
No 14
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=24.06 E-value=1.4e+02 Score=20.38 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=16.0
Q ss_pred hhcHHHHHHHHHHHHHHHhh
Q 030422 157 KMFLQPVREKLLLFEQELKD 176 (177)
Q Consensus 157 ~~~~~~ir~~l~~f~~eLk~ 176 (177)
....-.||..|..|++.|+.
T Consensus 44 ~~~r~KiR~~L~ey~k~L~~ 63 (64)
T PF05596_consen 44 QEVRKKIRAALAEYCKGLKN 63 (64)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 55566889999999998874
No 15
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=22.13 E-value=3.3e+02 Score=20.03 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=15.5
Q ss_pred hhcHHHHHHHHHHHHHHHhhC
Q 030422 157 KMFLQPVREKLLLFEQELKDR 177 (177)
Q Consensus 157 ~~~~~~ir~~l~~f~~eLk~r 177 (177)
..+.+.+++.+.+|.+.|++|
T Consensus 123 ~~v~~~~~~~~~~~~~~l~~~ 143 (146)
T cd07823 123 GGIGDVAGRLLAQFAANLEAR 143 (146)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 555667777888888888765
No 16
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=20.12 E-value=1.7e+02 Score=25.26 Aligned_cols=50 Identities=22% Similarity=0.222 Sum_probs=35.5
Q ss_pred EEEEeeeeeEeEEEE---EeecCeeEEEEEEEEEEEEEEEEeecCCcceEEEEEEccc
Q 030422 69 AEITEVSNCVGDAFL---VTVRNKKRVGYNYELTLKVRGEWNIREEKKMVKGHIDIPE 123 (177)
Q Consensus 69 ~~i~~V~~v~GdAsv---~~rKGK~i~~ydl~i~l~w~~~~~~~~~~~~~~G~i~ipe 123 (177)
|+++.--.|+++|.+ +..+||++.+=||++--+... +++..++|-|.|.|
T Consensus 63 ~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~dV~I-----eggfva~g~Ivirn 115 (277)
T COG4801 63 CKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADVII-----EGGFVAKGWIVIRN 115 (277)
T ss_pred eEeeccEEEcCceEEeccceeeeeEEEecccccccceEE-----ecCeeecceEEEcC
Confidence 566654567777776 467899999888888666543 34567888888855
Done!