Query 030422
Match_columns 177
No_of_seqs 105 out of 329
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 21:56:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030422.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030422hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1usu_B AHA1; chaperone/complex 100.0 8.7E-46 3E-50 295.8 10.6 145 14-176 11-162 (170)
2 3n72_A Putative activator of H 100.0 1.7E-43 5.7E-48 281.1 7.9 138 33-176 11-151 (164)
3 2b3g_B Cellular tumor antigen 78.5 0.31 1.1E-05 26.7 -0.5 8 1-8 12-19 (28)
4 1y43_A Aspergillopepsin II lig 45.8 26 0.00089 20.8 3.5 27 100-126 5-31 (39)
5 2pco_A Latarcin-1, LTC-1; cont 20.1 35 0.0012 18.4 0.8 15 163-177 7-21 (26)
6 3h0g_K DNA-directed RNA polyme 19.6 2E+02 0.0068 20.8 5.2 26 151-176 85-110 (123)
7 2jvw_A Uncharacterized protein 18.8 52 0.0018 22.8 1.7 13 45-57 58-70 (88)
8 2pa8_L DNA-directed RNA polyme 18.7 2.3E+02 0.0079 19.2 5.6 41 130-174 51-91 (92)
9 3mnm_A ADP-ribosylation factor 16.6 1.5E+02 0.0051 21.2 3.9 27 98-124 97-123 (123)
10 2pcs_A Conserved protein; stru 16.0 2.8E+02 0.0095 19.3 5.3 11 114-124 90-100 (162)
No 1
>1usu_B AHA1; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.83.2.1 PDB: 1usv_B
Probab=100.00 E-value=8.7e-46 Score=295.77 Aligned_cols=145 Identities=21% Similarity=0.301 Sum_probs=112.9
Q ss_pred CCccccccCCCCCCCcccccccCCeeeecCCChhHHHHHHHHhccCceeee--cCceEEEEeeeeeEeEEEEEeecCeeE
Q 030422 14 PATLGSVWNRLDPTFRSECTVEAGTWEEKSLNKWASDRIKELLTSVGSVEF--SGGKAEITEVSNCVGDAFLVTVRNKKR 91 (177)
Q Consensus 14 ~~~~~S~Wn~gdprwiv~~rvNnwhWeEKd~t~Wak~~l~elL~~~~~v~~--~~~~~~i~~V~~v~GdAsv~~rKGK~i 91 (177)
.-+.++.||- |||||+||||++||++||+++|.++. +++ +++.++|++|++|+|||+|++||||+|
T Consensus 11 ~~~~~d~~Nv-----------NNWHWeEKn~t~Wak~~lkelL~~~~-~e~~~~~~~~~i~~V~~v~GDA~V~~RKGK~i 78 (170)
T 1usu_B 11 GMASMVVNNP-----------NNWHWVDKNCIGWAKEYFKQKIVGVE-AGSVKDKKYAKIKSVSSIEGDCEVNQRKGKVI 78 (170)
T ss_dssp --------------------------CCEETHHHHHHHHHHHHTTCB-C-----CCEEEECCCCEEEEECEECCC-CCCC
T ss_pred ccccccCCCC-----------cccccccCCCCHHHHHHHHHHhccCE-eeccCCCcEEEEEEeeEEeeEEEEEEecCcEE
Confidence 3456778887 99999999999999999999999999 998 889999999999999999999999999
Q ss_pred EEEEEEEEEEEEEEEeecCCcce---EEEEEEcccccC-CCCCccEEEEEEecCCCcchhhhHHHHHHH-hhcHHHHHHH
Q 030422 92 VGYNYELTLKVRGEWNIREEKKM---VKGHIDIPEFSF-GELDDLQMQVRISEEKDLSKEDKLQISQDL-KMFLQPVREK 166 (177)
Q Consensus 92 ~~ydl~i~l~w~~~~~~~~~~~~---~~G~i~ipe~s~-~~~dd~ei~v~~~~~~~~~~~~~~~l~~~~-~~~~~~ir~~ 166 (177)
|+|||+|+|+|+|+. .+++.. ++|+|+|||||+ ++.|||+|+|++++.++..++ ++++| +.|+|+||++
T Consensus 79 ~~yD~~i~l~w~g~~--~~~~~~~~~v~G~i~IPe~s~d~~~dd~e~~v~~~~~~~~~~~----~k~~vr~~~~p~lr~~ 152 (170)
T 1usu_B 79 SLFDLKITVLIEGHV--DSKDGSALPFEGSINVPEVAFDSEASSYQFDISIFKETSELSE----AKPLIRSELLPKLRQI 152 (170)
T ss_dssp CCCEEEEEEEEEEEC--CC----CCEEEEEEEEEEEETTCCGGGCCCEEEETTCCTTSTT----HHHHHHHHTHHHHHHH
T ss_pred EEEEEEEEEEEEEEE--CCCCccceeeEEEEEeccccCCCCCcccEEEEEEccCCchHHH----HHHHHHHHhHHHHHHH
Confidence 999999999999984 235566 999999999999 667899999999876664333 99999 9999999999
Q ss_pred HHHHHHHHhh
Q 030422 167 LLLFEQELKD 176 (177)
Q Consensus 167 l~~f~~eLk~ 176 (177)
|.+|+++|++
T Consensus 153 l~~f~~eL~~ 162 (170)
T 1usu_B 153 FQQFGKDLLA 162 (170)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 2
>3n72_A Putative activator of HSP90; malaria, structural genomics, heat shock, structural genomic consortium, SGC, chaperone activator; 1.77A {Plasmodium falciparum}
Probab=100.00 E-value=1.7e-43 Score=281.10 Aligned_cols=138 Identities=21% Similarity=0.268 Sum_probs=112.4
Q ss_pred cccCCeeeecCCChhHHHHHHHHhccCceeeecCceEEEEeeeeeEeEEEEEeecCeeEEEEEEEEEEEEEEEEeecCCc
Q 030422 33 TVEAGTWEEKSLNKWASDRIKELLTSVGSVEFSGGKAEITEVSNCVGDAFLVTVRNKKRVGYNYELTLKVRGEWNIREEK 112 (177)
Q Consensus 33 rvNnwhWeEKd~t~Wak~~l~elL~~~~~v~~~~~~~~i~~V~~v~GdAsv~~rKGK~i~~ydl~i~l~w~~~~~~~~~~ 112 (177)
|.|||||+||||++||++||+++|.++. ++++++.++|+++ +|+|||+|++||||+||+|||+|+|+|+|+.. ++++
T Consensus 11 ~~nNWHW~EKn~t~Wak~~lkelL~~l~-~e~~~~~~~i~~~-~veGDA~V~~RKGK~I~~yDl~i~l~w~g~~~-~~~~ 87 (164)
T 3n72_A 11 RENLYFQGERNYNKWAESYIKYNLSNLK-IEKEDLTIYFDNL-QVSGNACVSIRKGKQINSFEYIIKFEWLYSKK-KEGK 87 (164)
T ss_dssp HHHHHCCCCEECHHHHHHHHHHHHHTCE-EC----CEEEEEE-EEEEEEEEEEETTEEEEEEEEEEEEEEEEC-------
T ss_pred CCCCCcccccCCCHHHHHHHHHHhcccE-eecCCeEEEEEEE-EEEeEEEEEEecCcEEEEEEEEEEEEEEEEec-CCCC
Confidence 4789999999999999999999999999 8888889999994 99999999999999999999999999999742 4555
Q ss_pred ceEEEEEEcccccCC--CCCccEEEEEEecCCCcchhhhHHHHHHH-hhcHHHHHHHHHHHHHHHhh
Q 030422 113 KMVKGHIDIPEFSFG--ELDDLQMQVRISEEKDLSKEDKLQISQDL-KMFLQPVREKLLLFEQELKD 176 (177)
Q Consensus 113 ~~~~G~i~ipe~s~~--~~dd~ei~v~~~~~~~~~~~~~~~l~~~~-~~~~~~ir~~l~~f~~eLk~ 176 (177)
..++|+|+|||||++ +++||+|+|++.+..+..++ .++++| +.|+|+||++|.+|+++|++
T Consensus 88 ~~~~G~i~IPe~s~dn~e~dd~ei~vs~~~~~~~~~~---~~~~lvr~~~~~~lr~~L~~f~~~L~~ 151 (164)
T 3n72_A 88 DYFGGSVEIPDFSTFSLEENDYAINIERTDESENLRF---IYDSILKKEGKEKIKECLKNFQEDLLK 151 (164)
T ss_dssp -CEEEEEEEEEEETTHHHHTCCCCEEC--CCSHHHHH---HHHHTTTTHHHHHHHHHHTTHHHHHHH
T ss_pred cEEeEEEEeceecCCCCcccceEEEEEEccCCccHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 789999999999994 67899999998876542221 135577 99999999999999999986
No 3
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=78.52 E-value=0.31 Score=26.69 Aligned_cols=8 Identities=88% Similarity=1.194 Sum_probs=6.9
Q ss_pred CCCccccc
Q 030422 1 MLSPDDIL 8 (177)
Q Consensus 1 ~~~~~~~~ 8 (177)
|||||||-
T Consensus 12 mlspddi~ 19 (28)
T 2b3g_B 12 MLSPDDIE 19 (28)
T ss_dssp GCCHHHHH
T ss_pred hcChHHHH
Confidence 89999984
No 4
>1y43_A Aspergillopepsin II light chain; proctase A, beta sandwich structure, hydrolase; 1.40A {Aspergillus niger var} SCOP: b.29.1.20
Probab=45.79 E-value=26 Score=20.78 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=20.4
Q ss_pred EEEEEEEeecCCcceEEEEEEcccccC
Q 030422 100 LKVRGEWNIREEKKMVKGHIDIPEFSF 126 (177)
Q Consensus 100 l~w~~~~~~~~~~~~~~G~i~ipe~s~ 126 (177)
-+|.|.+.....-..+.|++++|..+.
T Consensus 5 sNWaGAVl~g~~~t~VsgtftVP~~s~ 31 (39)
T 1y43_A 5 SNWAGAVLIGDGYTKVTGEFTVPSVSA 31 (39)
T ss_dssp SSEEEEEEECSCEEEEEEEEECCCCBC
T ss_pred ccceEEEecCCCeEEEEEEEECCcccC
Confidence 468887643444467999999999887
No 5
>2pco_A Latarcin-1, LTC-1; continuous helix, toxin; NMR {Synthetic}
Probab=20.09 E-value=35 Score=18.45 Aligned_cols=15 Identities=33% Similarity=0.423 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhhC
Q 030422 163 VREKLLLFEQELKDR 177 (177)
Q Consensus 163 ir~~l~~f~~eLk~r 177 (177)
++++|..|.+.|++|
T Consensus 7 ~keklKkf~~~lk~k 21 (26)
T 2pco_A 7 WRRKLKKLRNALKKK 21 (26)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 566677777766653
No 6
>3h0g_K DNA-directed RNA polymerase II subunit RPB11; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=19.63 E-value=2e+02 Score=20.82 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=17.4
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHhh
Q 030422 151 QISQDLKMFLQPVREKLLLFEQELKD 176 (177)
Q Consensus 151 ~l~~~~~~~~~~ir~~l~~f~~eLk~ 176 (177)
+|+++++.+...+......|.+++..
T Consensus 85 aL~~al~~L~~~~~~l~~~F~~~~~~ 110 (123)
T 3h0g_K 85 VIVDAAKSLITHLEEIKVNFMREWEL 110 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37776666666677777777776654
No 7
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=18.76 E-value=52 Score=22.82 Aligned_cols=13 Identities=23% Similarity=0.808 Sum_probs=11.1
Q ss_pred ChhHHHHHHHHhc
Q 030422 45 NKWASDRIKELLT 57 (177)
Q Consensus 45 t~Wak~~l~elL~ 57 (177)
|+||+++.+.+-.
T Consensus 58 TpWAR~KVE~lYL 70 (88)
T 2jvw_A 58 TDWARERVENIYL 70 (88)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHH
Confidence 7999999998654
No 8
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=18.73 E-value=2.3e+02 Score=19.21 Aligned_cols=41 Identities=2% Similarity=-0.032 Sum_probs=21.4
Q ss_pred CccEEEEEEecCCCcchhhhHHHHHHHhhcHHHHHHHHHHHHHHH
Q 030422 130 DDLQMQVRISEEKDLSKEDKLQISQDLKMFLQPVREKLLLFEQEL 174 (177)
Q Consensus 130 dd~ei~v~~~~~~~~~~~~~~~l~~~~~~~~~~ir~~l~~f~~eL 174 (177)
....+.|..++..++-+ +|+++++.+...+.....+|.+++
T Consensus 51 ~~~~lrIqT~~~~~p~~----al~~a~~~l~~~~~~~~~~f~~~~ 91 (92)
T 2pa8_L 51 DKIIVKILTDGSITPKD----ALLKAIENIRGMTSHYIDEIKGLT 91 (92)
T ss_dssp CCEEEEEEECSSSCHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666776654333212 366655555555555555555544
No 9
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}
Probab=16.60 E-value=1.5e+02 Score=21.20 Aligned_cols=27 Identities=11% Similarity=0.246 Sum_probs=17.1
Q ss_pred EEEEEEEEEeecCCcceEEEEEEcccc
Q 030422 98 LTLKVRGEWNIREEKKMVKGHIDIPEF 124 (177)
Q Consensus 98 i~l~w~~~~~~~~~~~~~~G~i~ipe~ 124 (177)
++|+|...+..++....-.|.+.+|.+
T Consensus 97 lklR~klsY~~~g~~~~E~g~~~lp~~ 123 (123)
T 3mnm_A 97 LXVKWKVNYSVNSTQAEETAVFTLPNV 123 (123)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred EEEEEEEEEEECCeEEEEEEEEecCCC
Confidence 455555554445555666799999864
No 10
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=15.96 E-value=2.8e+02 Score=19.29 Aligned_cols=11 Identities=27% Similarity=0.480 Sum_probs=6.2
Q ss_pred eEEEEEEcccc
Q 030422 114 MVKGHIDIPEF 124 (177)
Q Consensus 114 ~~~G~i~ipe~ 124 (177)
...|++++...
T Consensus 90 ~~~~~~~l~~~ 100 (162)
T 2pcs_A 90 NAEGVIDLTPI 100 (162)
T ss_dssp EEEEEEEEEES
T ss_pred EEEEEEEEEec
Confidence 35666766443
Done!