Query 030423
Match_columns 177
No_of_seqs 108 out of 358
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 21:57:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030423.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030423hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ydu_A AT5G01610; DUF538, stru 100.0 1E-42 3.4E-47 283.1 6.5 118 22-144 48-168 (170)
2 4a2l_A BT_4663, two-component 44.5 3.5 0.00012 37.7 -0.9 60 1-62 1-61 (795)
3 2nzc_A Hypothetical protein; s 29.0 19 0.00066 25.7 1.2 17 85-101 66-82 (86)
4 3q9p_A Heat shock protein beta 23.7 67 0.0023 21.7 3.2 31 33-64 54-84 (85)
5 3bx4_B Aggretin beta chain; to 23.2 17 0.00059 25.8 0.0 19 1-19 1-19 (146)
6 3hun_A Penicillin-binding prot 21.9 35 0.0012 31.0 1.7 35 27-63 52-89 (453)
7 1wxa_A Afadin, AF-6 protein; R 21.1 33 0.0011 25.2 1.2 28 20-51 32-59 (116)
8 3hg9_A PILM; structural genomi 20.5 33 0.0011 26.2 1.1 58 33-93 43-103 (131)
9 3dex_A SAV_2001; alpha-beta pr 19.5 1.6E+02 0.0054 21.7 4.6 33 25-64 30-64 (107)
10 2npb_A Selenoprotein W; struct 18.0 1.4E+02 0.0047 21.3 3.9 34 26-66 21-57 (96)
No 1
>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1
Probab=100.00 E-value=1e-42 Score=283.12 Aligned_cols=118 Identities=26% Similarity=0.582 Sum_probs=111.2
Q ss_pred CCccccHHHHHHhcCCCCCCCCCCceeEEecC-cceEEEEEcCeEEEEEe--ceEEeeeeeeeeecccccccccceeEEE
Q 030423 22 NSKQESIYEILKEHGLPMGLLPKGIDEFSIDG-TGNFEVFLEQACNAKFE--SELHYDRNVSGTLSYGQMGSLSGISAQE 98 (177)
Q Consensus 22 ~~~~~tayelL~~~GLP~GLLP~~V~~y~l~~-tG~f~V~l~~~C~~~f~--~~v~Y~~~ItG~i~~G~I~~L~GVk~K~ 98 (177)
+.+++|+||+|++||||+||||++|++|++|+ ||+|||+|+++|+|+|+ ++|+|+++|||+|++|+|++|+||++|+
T Consensus 48 g~~~~ta~elL~e~gLP~GLLP~~V~~Y~l~~~tG~f~V~l~~~C~~~f~~~~~v~Y~~~VtG~l~~GkI~~L~GVk~K~ 127 (170)
T 1ydu_A 48 GKMQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVEGIKTKV 127 (170)
T ss_dssp TTTTSSCHHHHHHHSCTTCTTTSSSCEEEECTTTCSEEEECSSCEEEESTTSSEEEECSEEEEEECSSCEEEEESCEEES
T ss_pred ccccccHHHHHHHcCCCCCcCCCCCeEEEEECCCcEEEEEeCCCEEEEecCccEEEEcCEEEEEEcCCcCccccCEEEEE
Confidence 34688999999999999999999999999997 59999999999999995 6999999999999999999999999999
Q ss_pred EeecceeeEEEEcCCCCCeEEEEEceeeeeeccccccCCCcccccc
Q 030423 99 LFLWFPVKGIRVDIPSSGLIYFDVGVVRKQFSLSLFETPRDCMAVR 144 (177)
Q Consensus 99 lflWv~V~eI~vd~~~~g~I~F~vg~isksFP~s~F~~~p~C~~~~ 144 (177)
| +|++|++|.| ++++|+|++|+ +++||+++|+.+|+|....
T Consensus 128 L-lWv~V~eI~v---~~~kI~F~vGi-~ksfp~saFe~~~~c~~~~ 168 (170)
T 1ydu_A 128 M-IWVKVTSIST---DASKVYFTAGM-KKSRSRDAYGVQRNGLRVD 168 (170)
T ss_dssp S-SEESCCCBEE---CSSSEECTTSS-SSCCCHHHHSSCCCCCCTT
T ss_pred E-EEeeEEEEEE---eCCEEEEEEcC-cccccHHHhcCCcCCcccC
Confidence 9 9999999999 47899999995 8999999999999998753
No 2
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=44.54 E-value=3.5 Score=37.74 Aligned_cols=60 Identities=18% Similarity=0.159 Sum_probs=19.2
Q ss_pred CcchhHHHHHHHHHHHhhccCCCccccHHHHHHhcCCCCCCCC-CCceeEEecCcceEEEEEc
Q 030423 1 MKNMILPVLLLSFLTLSISNVNSKQESIYEILKEHGLPMGLLP-KGIDEFSIDGTGNFEVFLE 62 (177)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~s~~~~~~~tayelL~~~GLP~GLLP-~~V~~y~l~~tG~f~V~l~ 62 (177)
|++|.+++++++++++.. ....|+....-..+.++...|| | ..|..-.-|++|++|+--.
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~aq~~~~~~f~~~~~~~gL-s~n~v~~I~qD~~G~lWigT~ 61 (795)
T 4a2l_A 1 MSKLKKIVIYLFFLCLGM-HSAFSETPEQITFSYISINEGL-SQSTVFSIDQDKRGNMWFATY 61 (795)
T ss_dssp ----------------------------CCCCEEESGGGTC-SSSCEEEEEECTTSCEEEEET
T ss_pred ChhhHHHHHHHHHHHHhh-hHhhcccccceeEEEccccCCC-ccceeEEEEEcCCCCEEEeec
Confidence 677777666655544332 1111221000012344555564 5 4566666677899999543
No 3
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=29.03 E-value=19 Score=25.71 Aligned_cols=17 Identities=29% Similarity=0.663 Sum_probs=14.5
Q ss_pred ccccccccceeEEEEee
Q 030423 85 YGQMGSLSGISAQELFL 101 (177)
Q Consensus 85 ~G~I~~L~GVk~K~lfl 101 (177)
.|++.+|+||++|-...
T Consensus 66 ~gkLg~i~GV~vKt~~~ 82 (86)
T 2nzc_A 66 SGKLGQISGVRVKTVPL 82 (86)
T ss_dssp HHHHHTSTTEEEEEEEC
T ss_pred HHHhCCCCCEEEEEEEe
Confidence 47999999999998753
No 4
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=23.70 E-value=67 Score=21.65 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=20.8
Q ss_pred HhcCCCCCCCCCCceeEEecCcceEEEEEcCe
Q 030423 33 KEHGLPMGLLPKGIDEFSIDGTGNFEVFLEQA 64 (177)
Q Consensus 33 ~~~GLP~GLLP~~V~~y~l~~tG~f~V~l~~~ 64 (177)
+++-||.+.=|+.|+ -.+.++|-+.|.++++
T Consensus 54 R~~~LP~~vd~~~i~-A~~~~~GvL~I~lPK~ 84 (85)
T 3q9p_A 54 RKYTLPPGVDPTQVS-SSLSPEGTLTVEAPMP 84 (85)
T ss_dssp EEEECCTTCCGGGCE-EEECTTSEEEEEEECC
T ss_pred EEEECCCCcChHHcE-EEECCCCEEEEEEEcC
Confidence 344566666665554 4555689999999874
No 5
>3bx4_B Aggretin beta chain; toxin; 1.70A {Agkistrodon rhodostoma} PDB: 2vrp_B
Probab=23.24 E-value=17 Score=25.83 Aligned_cols=19 Identities=32% Similarity=0.329 Sum_probs=0.0
Q ss_pred CcchhHHHHHHHHHHHhhc
Q 030423 1 MKNMILPVLLLSFLTLSIS 19 (177)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~s 19 (177)
|.+||.+.++++++.++++
T Consensus 1 M~~~~~~~~~ll~~~~~~~ 19 (146)
T 3bx4_B 1 MGRFIFVSFGLLVVFLSLS 19 (146)
T ss_dssp -------------------
T ss_pred CceeHHHHHHHHHHHHhcc
Confidence 7788765555444444433
No 6
>3hun_A Penicillin-binding protein 4; ampicillin, beta-lactamase, serine type D-Ala, D-Ala-carboxypeptidase, antibiotics; HET: ZZ7; 2.00A {Staphylococcus aureus} PDB: 3hum_A*
Probab=21.95 E-value=35 Score=30.98 Aligned_cols=35 Identities=11% Similarity=0.074 Sum_probs=21.7
Q ss_pred cHHHHHHhcCCCCCCCCC--CceeE-EecCcceEEEEEcC
Q 030423 27 SIYEILKEHGLPMGLLPK--GIDEF-SIDGTGNFEVFLEQ 63 (177)
Q Consensus 27 tayelL~~~GLP~GLLP~--~V~~y-~l~~tG~f~V~l~~ 63 (177)
+-.|++.++|++. ||+ +.+++ -+|++|.+-...+.
T Consensus 52 ~~~~~~~~~G~~~--l~~~~~a~sail~D~TG~vL~~kNa 89 (453)
T 3hun_A 52 TPVQAANQYGYAG--LSAAYEPTSAVNVSQTGQLLYQYNI 89 (453)
T ss_dssp CHHHHHHHTTCTT--CCGGGCCSEEEEEETTSBEEEEEST
T ss_pred CchhhHhhcCccc--CCcCCCceEEEEEECCCCEEEEECC
Confidence 6789999997762 232 33444 45645987655443
No 7
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5
Probab=21.12 E-value=33 Score=25.25 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=20.8
Q ss_pred cCCCccccHHHHHHhcCCCCCCCCCCceeEEe
Q 030423 20 NVNSKQESIYEILKEHGLPMGLLPKGIDEFSI 51 (177)
Q Consensus 20 ~~~~~~~tayelL~~~GLP~GLLP~~V~~y~l 51 (177)
.-+++.+-+-++|+.|||+. .+...|.|
T Consensus 32 ~~tta~~vV~eaLekygL~~----~~~~~Y~L 59 (116)
T 1wxa_A 32 TTDTADFAVAESLEKYGLEK----ENPKDYCI 59 (116)
T ss_dssp SSCCHHHHHHHHHHHHTCSS----SCTTTEEE
T ss_pred CCCCHHHHHHHHHHHhCCCC----CCchheEE
Confidence 33456777889999999984 56667776
No 8
>3hg9_A PILM; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, P protein, unknown function; 2.40A {Pseudomonas aeruginosa}
Probab=20.52 E-value=33 Score=26.19 Aligned_cols=58 Identities=14% Similarity=0.120 Sum_probs=41.3
Q ss_pred HhcCCCCCCCC-CCceeEEecCcceEEEEEcCeEEEEEe--ceEEeeeeeeeeecccccccccc
Q 030423 33 KEHGLPMGLLP-KGIDEFSIDGTGNFEVFLEQACNAKFE--SELHYDRNVSGTLSYGQMGSLSG 93 (177)
Q Consensus 33 ~~~GLP~GLLP-~~V~~y~l~~tG~f~V~l~~~C~~~f~--~~v~Y~~~ItG~i~~G~I~~L~G 93 (177)
.+.|||.+..| .+++.|. +.|.+||+...++.--.. ....=++ .-|..+.|+|-.-.|
T Consensus 43 a~L~lP~wy~~~~~i~~~I--~~Gr~yV~~~~~~pgL~aaL~~~t~~S-l~G~~~~G~Lv~p~g 103 (131)
T 3hg9_A 43 SALGLPAWFRKPVRLQGYI--AAGTSYAFIASPPAGLAAAVDTGTESD-LVGVRRNGQLVTRRL 103 (131)
T ss_dssp TTTTCCSSCCCCTTEEEEE--SSSCEEEEESSCCTTHHHHHHHHCCCE-EEEEESSSSEEETTT
T ss_pred HHcCCCcccCCCCCeeEEE--ECCEEEEEecCCCchHHHHHHHhcCcc-eeEEeeCCEEECCCC
Confidence 46789999988 6888887 458889988554431111 1234455 889999999988887
No 9
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=19.47 E-value=1.6e+02 Score=21.69 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=24.4
Q ss_pred cccHHHHHHhcCCCCCCCCCCceeEEecC--cceEEEEEcCe
Q 030423 25 QESIYEILKEHGLPMGLLPKGIDEFSIDG--TGNFEVFLEQA 64 (177)
Q Consensus 25 ~~tayelL~~~GLP~GLLP~~V~~y~l~~--tG~f~V~l~~~ 64 (177)
.--+-|+|.++ |..+.+.++.+ +|.|+|.+++.
T Consensus 30 ~~laqeLl~tF-------~~~l~eVsL~Pg~gG~FeV~vdg~ 64 (107)
T 3dex_A 30 AWLAQELLTTF-------ETELTELALKPGTGGVFVVRVDDE 64 (107)
T ss_dssp HHHHHHHHHHS-------TTTEEEEEEEEESSSCEEEEETTE
T ss_pred HHHHHHHHHhc-------ccccceEEEEeCCCceEEEEECCE
Confidence 34567888887 45567778876 39999999874
No 10
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=17.97 E-value=1.4e+02 Score=21.30 Aligned_cols=34 Identities=24% Similarity=0.125 Sum_probs=23.3
Q ss_pred ccHHHHHHhcCCCCCCCCCCce-eEEecC--cceEEEEEcCeEE
Q 030423 26 ESIYEILKEHGLPMGLLPKGID-EFSIDG--TGNFEVFLEQACN 66 (177)
Q Consensus 26 ~tayelL~~~GLP~GLLP~~V~-~y~l~~--tG~f~V~l~~~C~ 66 (177)
.-+-++|.+| |..+. +..+.+ +|.|+|++++.--
T Consensus 21 ~laqeLl~~F-------p~~l~V~~~l~p~~~G~FEV~vng~lV 57 (96)
T 2npb_A 21 QLKEKLEHEF-------PGCLDICGEGTPQVTGFFEVTVAGKLV 57 (96)
T ss_dssp HHHHHHHHHS-------BTTEEEEECCCSSCCSCCEEEETTEEE
T ss_pred HHHHHHHHhC-------CcceEEEEEEcCCCCcEEEEEECCEEE
Confidence 3456777776 55566 677766 3999999987433
Done!