BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030424
(177 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VY52|PPD2_ARATH PsbP domain-containing protein 2, chloroplastic OS=Arabidopsis
thaliana GN=PPD2 PE=1 SV=1
Length = 232
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/108 (62%), Positives = 78/108 (72%), Gaps = 3/108 (2%)
Query: 46 SLRLSKRELCLSSFVLILNGLYPKLSKASLPEEMELQRYTDSNEGFTLLRPSSWIKVDKA 105
S+ LSKR L LS L NG S+ E LQRYTDSN GFTLL PSS+ KV+KA
Sbjct: 43 SINLSKRHLNLSILTLFFNGFLLDNKAKSMEE---LQRYTDSNNGFTLLIPSSYTKVEKA 99
Query: 106 GATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRK 153
GA LFEE N G+NN+GVVV+PVR+ SL +FG+PQFVADKLI AEKRK
Sbjct: 100 GANALFEELNNGSNNIGVVVSPVRIKSLDQFGSPQFVADKLINAEKRK 147
>sp|O23403|PPD1_ARATH PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis
thaliana GN=PPD1 PE=1 SV=1
Length = 287
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 61 LILNGLYPKLSKASLPEEME----LQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANK 116
L+++GL +S+A+LP + Y D+ +G++ P +WI+V AGA + F +
Sbjct: 87 LLMSGLI--VSQANLPTAFASTPVFREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVV 144
Query: 117 GTNNLGV---VVNPVRVASLGEFGTPQFVADKLIQ 148
NL V + SL + G+P+ V ++++
Sbjct: 145 LDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLR 179
>sp|Q40407|PSBP_NARPS Oxygen-evolving enhancer protein 2, chloroplastic OS=Narcissus
pseudonarcissus GN=PSBP PE=2 SV=1
Length = 265
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 85 TDSNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTP-Q 140
T + +GF +L PS W +V+ G + +E+ T+N+GV+VNP S+ ++G+P Q
Sbjct: 99 TVTGDGFKILIPSKWNPSKEVEFPGQVLRYEDNFDTTSNVGVMVNPTDKKSIKDYGSPEQ 158
Query: 141 FVA 143
F++
Sbjct: 159 FLS 161
>sp|Q00434|PSBP_WHEAT Oxygen-evolving enhancer protein 2, chloroplastic OS=Triticum
aestivum GN=PSBP PE=2 SV=1
Length = 258
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 87 SNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ 140
S EGF L+ P+ W + + G + +E+ T+NL V++NP ++ ++G+P+
Sbjct: 95 SGEGFKLMIPAKWNPSKEREFPGQVLRYEDNFDATSNLSVIINPTTKKTITDYGSPE 151
>sp|P18212|PSBP2_TOBAC Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana
tabacum GN=PSBP2 PE=1 SV=2
Length = 265
Score = 36.6 bits (83), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 78 EMELQRYTDSNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLG 134
+ + Q Y + +GF L PS W +V+ G + FE+ T+N+ V + P S+
Sbjct: 94 DTDFQTY--NGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSIT 151
Query: 135 EFGTPQ 140
+FG+P+
Sbjct: 152 DFGSPE 157
>sp|Q04127|PSBP3_TOBAC Oxygen-evolving enhancer protein 2-3, chloroplastic OS=Nicotiana
tabacum GN=PSBP3 PE=2 SV=1
Length = 266
Score = 36.6 bits (83), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 78 EMELQRYTDSNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLG 134
+ + Q Y + +GF L PS W +V+ G + FE+ T+N+ V + P S+
Sbjct: 95 DTDFQTY--NGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSIT 152
Query: 135 EFGTP-QFVA 143
+FG+P QF++
Sbjct: 153 DFGSPEQFLS 162
>sp|P12302|PSBP_SPIOL Oxygen-evolving enhancer protein 2, chloroplastic OS=Spinacia
oleracea GN=PSBP PE=1 SV=1
Length = 267
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 88 NEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ 140
+GF LL PS W + + G + +E+ T+NL V+V P S+ +FG+P+
Sbjct: 104 GDGFKLLVPSKWNPSKEKEFPGQVLRYEDNFDATSNLSVLVQPTDKKSITDFGSPE 159
>sp|O49080|PSBP_FRIAG Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria
agrestis GN=PSBP PE=2 SV=1
Length = 264
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 87 SNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTP-QFV 142
+ +GF LL P+ W +V+ G + +E+ T+N+ V V P S+ ++GTP +F+
Sbjct: 100 TGDGFNLLIPAKWNPSKEVEFPGQVLRYEDNFDVTSNVSVTVTPTSKKSITDYGTPEEFL 159
Query: 143 A--DKLI--QAEKRKNVHDIDLDETMVLT 167
+ D L+ QA K + D V T
Sbjct: 160 STVDYLLGKQAYSGKTASEGGFDPDSVAT 188
>sp|Q9SLQ8|PSBP_CUCSA Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis
sativus GN=PSBP PE=2 SV=1
Length = 263
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 87 SNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ 140
S +GF L PS W + + G + +E+ +NL V++NP S+ +FG+P+
Sbjct: 99 SGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNLSVIINPTDKKSIKDFGSPE 155
>sp|P11594|PSBP_SINAL Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba
GN=PSBP PE=2 SV=2
Length = 260
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 87 SNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ 140
S +GF + P+ W +V+ G + +E+ T+NL V+V P S+ ++G+P+
Sbjct: 96 SGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPE 152
>sp|Q42029|PSBP1_ARATH Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Arabidopsis
thaliana GN=PSBP1 PE=1 SV=2
Length = 263
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 87 SNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ 140
+ +GF + P+ W +++ G + FE+ T+NL V+V P S+ ++G+P+
Sbjct: 99 NGDGFKVQVPAKWNPSKEIEYPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPE 155
>sp|P85189|PSBP_HELAN Oxygen-evolving enhancer protein 2, chloroplastic OS=Helianthus
annuus GN=PSBP PE=1 SV=1
Length = 263
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 80 ELQRYTDSNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEF 136
E +YT GF L P+ W +V+ G + +E+ T+NL V+V P ++ ++
Sbjct: 94 EFSQYT--GPGFKLSVPAKWNPSKEVEYPGQVLRYEDNFDTTSNLAVMVTPTDKKAITDY 151
Query: 137 GTPQ 140
G P+
Sbjct: 152 GAPE 155
>sp|P29795|PSBP_SOLLC Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum
lycopersicum GN=PSBP PE=2 SV=1
Length = 258
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 88 NEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ 140
+GF L P+ W +V+ G + +E+ T+NL V V P S+ ++G+P+
Sbjct: 95 GDGFKLQVPAKWNPSKEVEYPGQVLRYEDNFDSTSNLIVAVTPTDKKSITDYGSPE 150
>sp|Q96334|PSBP_BRAJU Oxygen-evolving enhancer protein 2, chloroplastic (Fragment)
OS=Brassica juncea GN=PSBP PE=2 SV=1
Length = 217
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 87 SNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ 140
+ +GF + P+ W +V+ G + +E+ T+NL V+V P S+ ++G+P+
Sbjct: 53 NGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPE 109
>sp|P93566|PSBP_SOLTU Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum
tuberosum GN=PSBP PE=2 SV=1
Length = 260
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 87 SNEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ 140
+ +GF L P+ W +++ G + +E+ T+NL V V P S+ ++G+P+
Sbjct: 96 NGDGFKLQIPAKWNPSKEIEFPGQVLRYEDNFDSTSNLMVAVTPTDKKSITDYGSPE 152
>sp|Q7DM39|PSBP1_TOBAC Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Nicotiana
tabacum GN=PSBP1 PE=3 SV=2
Length = 268
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 88 NEGFTLLRPSSW---IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQ 140
+GF L P+ W +V+ G + +E+ T+NL V V P S+ ++G+P+
Sbjct: 105 GDGFKLQVPAKWNPSKEVEFPGQVLRYEDNFDSTSNLIVTVTPTDKKSITDYGSPE 160
>sp|Q39054|CNX1_ARATH Molybdopterin biosynthesis protein CNX1 OS=Arabidopsis thaliana
GN=CNX1 PE=1 SV=2
Length = 670
Score = 30.0 bits (66), Expect = 7.9, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 29/66 (43%)
Query: 100 IKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKRKNVHDID 159
+ D G + E+ G + LGV V P VA + G AD ++Q E K + D+
Sbjct: 72 VASDGPGEYPVITESRAGNDGLGVTVTPGTVAYVTTGGPIPDGADAVVQVEDTKVIGDVS 131
Query: 160 LDETMV 165
+ V
Sbjct: 132 TESKRV 137
>sp|Q6C161|EIF3A_YARLI Eukaryotic translation initiation factor 3 subunit A OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TIF32 PE=3 SV=1
Length = 955
Score = 29.6 bits (65), Expect = 9.7, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 100 IKVDKAGATVLFEEANKGTNNLGVVVNPVRV--ASLGEFGTPQFVADKLIQAEKRK 153
IK+D +VLFEE T + + P+ + L G VAD L AE R+
Sbjct: 482 IKIDHDQRSVLFEEVRAATGSASLQDTPIEIVRTQLSRLGRTLSVADPLNSAEARE 537
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,508,992
Number of Sequences: 539616
Number of extensions: 2318376
Number of successful extensions: 6175
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 6161
Number of HSP's gapped (non-prelim): 25
length of query: 177
length of database: 191,569,459
effective HSP length: 110
effective length of query: 67
effective length of database: 132,211,699
effective search space: 8858183833
effective search space used: 8858183833
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)