Query 030424
Match_columns 177
No_of_seqs 123 out of 177
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 21:59:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030424.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030424hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lnj_A SLL1418 protein, putati 99.7 9.1E-23 3.1E-27 162.6 0.0 74 79-152 12-90 (170)
2 2xb3_A PSBP protein; photosynt 99.8 1.4E-20 4.7E-25 148.2 6.9 75 78-152 5-81 (165)
3 1v2b_A 23-kDa polypeptide of p 99.8 9E-21 3.1E-25 153.6 2.7 73 79-153 7-86 (177)
4 3hlz_A Uncharacterized protein 83.1 1.3 4.5E-05 38.0 4.6 61 82-152 5-65 (269)
5 1tu1_A Hypothetical protein PA 52.2 15 0.0005 27.7 3.9 62 81-152 3-66 (148)
6 1g6p_A Cold shock protein TMCS 21.0 44 0.0015 22.0 1.7 24 83-113 6-29 (66)
7 3a0j_A Cold shock protein; OB- 19.4 85 0.0029 21.0 2.9 17 82-98 6-22 (73)
8 3cam_A Cold-shock domain famil 19.2 69 0.0024 21.2 2.4 25 82-112 6-30 (67)
9 3i2z_B RNA chaperone, negative 17.1 94 0.0032 20.7 2.7 27 80-112 8-34 (71)
10 1c9o_A CSPB, cold-shock protei 16.1 64 0.0022 21.1 1.6 23 83-112 7-29 (66)
No 1
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}
Probab=99.75 E-value=9.1e-23 Score=162.63 Aligned_cols=74 Identities=30% Similarity=0.626 Sum_probs=70.5
Q ss_pred cCceeeecCCCceEEecCCCCcccccc----CCcEEeecCCCCCceeEEEEeeCCC-CCcccCCCHHHHHHHHHHHHhh
Q 030424 79 MELQRYTDSNEGFTLLRPSSWIKVDKA----GATVLFEEANKGTNNLGVVVNPVRV-ASLGEFGTPQFVADKLIQAEKR 152 (177)
Q Consensus 79 ~gf~~y~D~~dGYsflyP~gW~~v~~~----G~dv~F~D~~~~~eNVsV~VsPv~~-~SI~dfGsPeeVg~~L~k~e~~ 152 (177)
.||++|+|+.|||+|+||.+|++++++ |+|++|+|+++.++||+|+|+|+++ ++|+|||+|+|||++|++++.+
T Consensus 12 ~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~~si~d~G~pe~va~~l~~~~~~ 90 (170)
T 2lnj_A 12 ASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATDVGYRFMKTVND 90 (170)
Confidence 699999999999999999999999988 9999999999999999999999996 9999999999999999998554
No 2
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=99.82 E-value=1.4e-20 Score=148.24 Aligned_cols=75 Identities=36% Similarity=0.616 Sum_probs=70.7
Q ss_pred ccCceeeecCCCceEEecCCCCcccccc-CCcEEeecCCCCCceeEEEEeeCCC-CCcccCCCHHHHHHHHHHHHhh
Q 030424 78 EMELQRYTDSNEGFTLLRPSSWIKVDKA-GATVLFEEANKGTNNLGVVVNPVRV-ASLGEFGTPQFVADKLIQAEKR 152 (177)
Q Consensus 78 e~gf~~y~D~~dGYsflyP~gW~~v~~~-G~dv~F~D~~~~~eNVsV~VsPv~~-~SI~dfGsPeeVg~~L~k~e~~ 152 (177)
..||++|.|+.+||+|+||.+|+++.++ |++++|+|+++..+||+|+|+|+.+ ++|+|||+|++||++|+++..+
T Consensus 5 ~~g~~~~~D~~~gysf~~P~~W~~~~~~~g~~v~f~d~~~~~~~v~V~v~p~~~~~~l~~~G~~e~va~~l~~~~~~ 81 (165)
T 2xb3_A 5 TSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEEVGDRLLRNIIA 81 (165)
T ss_dssp -CCEEEEEETTTTEEEEEETTEEEECCCTTEEEEEEESSCTTSEEEEEEEECSSCCCSGGGCCHHHHHHHHHHHTTS
T ss_pred CCCceEEEcCCCCEEEEcCCCCeEecCCCCceEEEECcccCCceEEEEEecCCCCCChHHcCCHHHHHHHHHHHhhc
Confidence 3599999999999999999999999998 9999999999999999999999985 9999999999999999998765
No 3
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2
Probab=99.80 E-value=9e-21 Score=153.65 Aligned_cols=73 Identities=29% Similarity=0.488 Sum_probs=61.8
Q ss_pred cCceeeecCCCceEEecCCCCcccc---ccCCcEEeecCCCCCceeEEEEeeCCCCCcccCCCHHH----HHHHHHHHHh
Q 030424 79 MELQRYTDSNEGFTLLRPSSWIKVD---KAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQF----VADKLIQAEK 151 (177)
Q Consensus 79 ~gf~~y~D~~dGYsflyP~gW~~v~---~~G~dv~F~D~~~~~eNVsV~VsPv~~~SI~dfGsPee----Vg~~L~k~e~ 151 (177)
.||++|. +|||+|+||.+|++++ .+|+|++|+|+++.++||+|+|+|+++++|+|||+|++ ||++|+++.+
T Consensus 7 ~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~~~si~dlGspe~~~~~v~~~l~~~~~ 84 (177)
T 1v2b_A 7 TDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAY 84 (177)
T ss_dssp CCEEEEE--CSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC-----
T ss_pred CCceEEe--cCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCCCCChhHCCCHHHHHHHHHHHHHHHhh
Confidence 5999997 8999999999999766 45999999999999999999999999999999999999 6888888766
Q ss_pred hc
Q 030424 152 RK 153 (177)
Q Consensus 152 ~k 153 (177)
+.
T Consensus 85 ~~ 86 (177)
T 1v2b_A 85 SG 86 (177)
T ss_dssp --
T ss_pred cc
Confidence 53
No 4
>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=83.06 E-value=1.3 Score=38.03 Aligned_cols=61 Identities=18% Similarity=0.352 Sum_probs=46.7
Q ss_pred eeeecCCCceEEecCCCCccccccCCcEEeecCCCCCceeEEEEeeCCCCCcccCCCHHHHHHHHHHHHhh
Q 030424 82 QRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKR 152 (177)
Q Consensus 82 ~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~D~~~~~eNVsV~VsPv~~~SI~dfGsPeeVg~~L~k~e~~ 152 (177)
.-|..++.=|++.||.+|+++.....--+|-+|..=+-|..+.--. | -..-|...+++|++
T Consensus 5 kk~ISPgaWfs~~yP~~W~EfEd~E~sflFynp~~WtGNfRISayk---------~-~~~yg~~~~~~El~ 65 (269)
T 3hlz_A 5 KKFISPGAWFSMNYPSDWNEFEDGEGSFLFYNPDVWTGNFRISAFK---------G-NASYGKDAIRQELK 65 (269)
T ss_dssp EEEECGGGCEEEEECTTCEEECCCTTEEEEECSSSCCCEEEEEEEE---------C-STTHHHHHHHHHHH
T ss_pred ceeecCCceeEEecCCCcccccCCCCceeeeChhhcccceEEEecc---------C-chhhHHHHHHHHHh
Confidence 4688889999999999999999888888899999999998655433 2 12345556666665
No 5
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=52.22 E-value=15 Score=27.67 Aligned_cols=62 Identities=8% Similarity=0.089 Sum_probs=35.0
Q ss_pred ceeeecCCCceEEecCCCCccccccCCcEEeecCCCCC--ceeEEEEeeCCCCCcccCCCHHHHHHHHHHHHhh
Q 030424 81 LQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGT--NNLGVVVNPVRVASLGEFGTPQFVADKLIQAEKR 152 (177)
Q Consensus 81 f~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~D~~~~~--eNVsV~VsPv~~~SI~dfGsPeeVg~~L~k~e~~ 152 (177)
+..| ...+++|..|.+|... ...|++-....+. -||.|...+... =.+.++..++-+++-++
T Consensus 3 m~~y--~~~Egsl~lP~gw~D~---t~nv~~~~~~~~~g~~~lvIsR~~~~~-----~~~l~~~~~~q~~~l~~ 66 (148)
T 1tu1_A 3 MTLY--RLHEADLEIPDAWQDQ---SINIFKLPASGPAREASFVISRDASQG-----DAPFADYVARQLENAEK 66 (148)
T ss_dssp EEEE--ECSSEEEEEETTSEEC---CBEEEEECCBTTBCCEEEEEEEECCCT-----TSCHHHHHHHHHHHHHH
T ss_pred CceE--EECCEEEeCCCCcEee---eEEEEEcCCCCCCCceEEEEEeccCCC-----CCCHHHHHHHHHHHHHh
Confidence 4567 5789999999999932 3455554432222 355555554442 13455555555554443
No 6
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=20.99 E-value=44 Score=22.02 Aligned_cols=24 Identities=21% Similarity=0.522 Sum_probs=16.5
Q ss_pred eeecCCCceEEecCCCCccccccCCcEEeec
Q 030424 83 RYTDSNEGFTLLRPSSWIKVDKAGATVLFEE 113 (177)
Q Consensus 83 ~y~D~~dGYsflyP~gW~~v~~~G~dv~F~D 113 (177)
..-|...||-|+-|.+ |.||+||-
T Consensus 6 k~fn~~kGfGFI~~~~-------g~dvFvH~ 29 (66)
T 1g6p_A 6 KWFDSKKGYGFITKDE-------GGDVFVHW 29 (66)
T ss_dssp EEEETTTTEEEEEETT-------SCBCBBCS
T ss_pred EEEECCCCEEEEecCC-------CceEEEEh
Confidence 3446789999999874 45666553
No 7
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=19.42 E-value=85 Score=21.03 Aligned_cols=17 Identities=6% Similarity=0.472 Sum_probs=12.8
Q ss_pred eeeecCCCceEEecCCC
Q 030424 82 QRYTDSNEGFTLLRPSS 98 (177)
Q Consensus 82 ~~y~D~~dGYsflyP~g 98 (177)
-..-|...||-|+-|.+
T Consensus 6 Vk~fn~~kGfGFI~~~~ 22 (73)
T 3a0j_A 6 VKWFNAEKGYGFIEREG 22 (73)
T ss_dssp EEEEETTTTEEEEECTT
T ss_pred EEEEECCCCEEEEecCC
Confidence 34456789999999874
No 8
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=19.17 E-value=69 Score=21.16 Aligned_cols=25 Identities=16% Similarity=0.549 Sum_probs=17.4
Q ss_pred eeeecCCCceEEecCCCCccccccCCcEEee
Q 030424 82 QRYTDSNEGFTLLRPSSWIKVDKAGATVLFE 112 (177)
Q Consensus 82 ~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~ 112 (177)
-..-|...||-|+-|.+ .|.||+||
T Consensus 6 Vk~fn~~kGfGFI~~~~------gg~dvFvH 30 (67)
T 3cam_A 6 VKWFNDAKGFGFITPDE------GGEDLFAH 30 (67)
T ss_dssp EEEEETTTTEEEEEETT------SCCCEEEE
T ss_pred EEEEECCCCeEEEecCC------CCccEEEE
Confidence 34456789999999864 35666665
No 9
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=17.14 E-value=94 Score=20.68 Aligned_cols=27 Identities=15% Similarity=0.441 Sum_probs=19.2
Q ss_pred CceeeecCCCceEEecCCCCccccccCCcEEee
Q 030424 80 ELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFE 112 (177)
Q Consensus 80 gf~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~ 112 (177)
|--..-|...||-|+-|.+ .|.||+||
T Consensus 8 G~Vk~fn~~kGfGFI~~~~------g~~dvFvH 34 (71)
T 3i2z_B 8 GNVKWFNESKGFGFITPED------GSKDVFVH 34 (71)
T ss_dssp EEEEEEETTTTEEEEEETT------CCCCEEEE
T ss_pred EEEEEEECCCCcEEEecCC------CCccEEEE
Confidence 5455567789999998854 34677775
No 10
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=16.07 E-value=64 Score=21.13 Aligned_cols=23 Identities=13% Similarity=0.551 Sum_probs=16.0
Q ss_pred eeecCCCceEEecCCCCccccccCCcEEee
Q 030424 83 RYTDSNEGFTLLRPSSWIKVDKAGATVLFE 112 (177)
Q Consensus 83 ~y~D~~dGYsflyP~gW~~v~~~G~dv~F~ 112 (177)
..-|...||-|+-|.+ |.||+||
T Consensus 7 k~fn~~kGfGFI~~~~-------g~dvFvH 29 (66)
T 1c9o_A 7 KWFNNEKGYGFIEVEG-------GSDVFVH 29 (66)
T ss_dssp EEEETTTTEEEEEETT-------EEEEEEE
T ss_pred EEEECCCCeEEEecCC-------CccEEEE
Confidence 3446788999998874 3566655
Done!