BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030427
(177 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9R1C0|TAF7_MOUSE Transcription initiation factor TFIID subunit 7 OS=Mus musculus
GN=Taf7 PE=1 SV=1
Length = 341
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 66/140 (47%), Gaps = 23/140 (16%)
Query: 19 MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
+E QFILR+PP A + R + + +DK L + DGR G + L+DL
Sbjct: 12 LESQFILRLPPEYAATVRRAVQSGHVNLKDK-LSIELHPDGRHGIVRVDRVPLAAKLVDL 70
Query: 79 PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE--------------------- 117
PCV ES KT D KTADI QM++ GD P E
Sbjct: 71 PCVTESLKTIDKKTFYKTADISQMLVATVDGDLYPPVEEAAATADPKANKKKDKDKEKKF 130
Query: 118 -YRHGLTPPMRDARKRRFRR 136
+ HG+T P+++ RKRRFR+
Sbjct: 131 VWNHGITLPLKNVRKRRFRK 150
>sp|Q6R1L1|TAF7_CRIGR Transcription initiation factor TFIID subunit 7 OS=Cricetulus
griseus GN=TAF7 PE=1 SV=1
Length = 341
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 23/140 (16%)
Query: 19 MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
+E QFILR+PP A + R + + +D+ L + DGR G + L+DL
Sbjct: 12 LESQFILRLPPEYASTVRRAVQSGHVNLKDR-LTIELHPDGRHGIVRVDRVPLAAKLVDL 70
Query: 79 PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE--------------------- 117
PCV+ES KT D KTADI QM++ GD P E
Sbjct: 71 PCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVAPADPKASKKKDKDKEKKF 130
Query: 118 -YRHGLTPPMRDARKRRFRR 136
+ HG+T P+++ RKRRFR+
Sbjct: 131 VWNHGITLPLKNVRKRRFRK 150
>sp|Q5H9L4|TAF7L_HUMAN Transcription initiation factor TFIID subunit 7-like OS=Homo
sapiens GN=TAF7L PE=2 SV=1
Length = 462
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 23/167 (13%)
Query: 19 MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
+E QFILR+P A + R L+ ++S + L + DGR + + L+DL
Sbjct: 98 VENQFILRLPLEHACTV-RNLARSQSVKMKDKLKIDLLPDGRHAVVEVEDVPLAAKLVDL 156
Query: 79 PCVVESFKTYDDCALVKTADIGQMIMV----------REPGDST-PDAVE---------- 117
PCV+ES +T D KTADI QM++ EP ST P+ V
Sbjct: 157 PCVIESLRTLDKKTFYKTADISQMLVCTADGDIHLSPEEPAASTDPNIVRKKERGREEKC 216
Query: 118 -YRHGLTPPMRDARKRRFRREPDLNPELVQRVEKDLLNIMTGATVEN 163
++HG+TPP+++ RK+RFR+ P++ + + + VEN
Sbjct: 217 VWKHGITPPLKNVRKKRFRKTQKKVPDVKEMEKSSFTEYIESPDVEN 263
>sp|Q5R7L9|TAF7_PONAB Transcription initiation factor TFIID subunit 7 OS=Pongo abelii
GN=TAF7 PE=2 SV=1
Length = 349
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 23/140 (16%)
Query: 19 MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
+E QFILR+PP A + R + + +D+ L + DGR G + L+DL
Sbjct: 12 LESQFILRLPPEYASTVRRAVQSGHVNLKDR-LTIELHPDGRHGIVRVDRVPLASKLVDL 70
Query: 79 PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE--------------------- 117
PCV+ES KT D KTADI QM++ GD P E
Sbjct: 71 PCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASKKKDKDKEKKF 130
Query: 118 -YRHGLTPPMRDARKRRFRR 136
+ HG+T P+++ RKRRFR+
Sbjct: 131 IWNHGITLPLKNVRKRRFRK 150
>sp|Q4R5A5|TAF7_MACFA Transcription initiation factor TFIID subunit 7 OS=Macaca
fascicularis GN=TAF7 PE=2 SV=1
Length = 349
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 23/140 (16%)
Query: 19 MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
+E QFILR+PP A + R + + +D+ L + DGR G + L+DL
Sbjct: 12 LESQFILRLPPEYASTVRRAVQSGHVNLKDR-LTIELHPDGRHGIVRVDRVPLASKLVDL 70
Query: 79 PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE--------------------- 117
PCV+ES KT D KTADI QM++ GD P E
Sbjct: 71 PCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASKKKDKDKEKKF 130
Query: 118 -YRHGLTPPMRDARKRRFRR 136
+ HG+T P+++ RKRRFR+
Sbjct: 131 IWNHGITLPLKNVRKRRFRK 150
>sp|Q15545|TAF7_HUMAN Transcription initiation factor TFIID subunit 7 OS=Homo sapiens
GN=TAF7 PE=1 SV=1
Length = 349
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 23/140 (16%)
Query: 19 MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
+E QFILR+PP A + R + + +D+ L + DGR G + L+DL
Sbjct: 12 LESQFILRLPPEYASTVRRAVQSGHVNLKDR-LTIELHPDGRHGIVRVDRVPLASKLVDL 70
Query: 79 PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE--------------------- 117
PCV+ES KT D KTADI QM++ GD P E
Sbjct: 71 PCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASKKKDKDKEKKF 130
Query: 118 -YRHGLTPPMRDARKRRFRR 136
+ HG+T P+++ RKRRFR+
Sbjct: 131 IWNHGITLPLKNVRKRRFRK 150
>sp|Q9D3R9|TAF7L_MOUSE Transcription initiation factor TFIID subunit 7-like OS=Mus
musculus GN=Taf7l PE=1 SV=2
Length = 471
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 24/133 (18%)
Query: 19 MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
+EEQFILR+PP A + +++ ++ +DK L + F DG + N P L++L
Sbjct: 106 VEEQFILRLPPEQAYAVRKIIHSRNAAWKDK-LKIDFSPDGHHAVVQVDNVSLPAKLVNL 164
Query: 79 PCVVESFKTYDDCALVKTADIGQMIMV----------REPGDSTPDAV------------ 116
PCV+ S KT D KTAD+ QM++ EP ST V
Sbjct: 165 PCVIGSLKTIDRKTFYKTADVSQMLVCSPEGEPHSPPEEPVVSTGPTVIGISEGKAERKK 224
Query: 117 -EYRHGLTPPMRD 128
++HG+TPP+++
Sbjct: 225 YNWKHGITPPLKN 237
>sp|Q2HJG8|TAF7_BOVIN Transcription initiation factor TFIID subunit 7 OS=Bos taurus
GN=TAF7 PE=2 SV=1
Length = 349
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 66/140 (47%), Gaps = 23/140 (16%)
Query: 19 MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
+E QFILR+PP A + R + + +D+ L + DGR G + L+DL
Sbjct: 12 LESQFILRLPPEYASTVRRAVQSGHVNLKDR-LSIELHPDGRHGIVRVDRVPLAAKLVDL 70
Query: 79 PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE--------------------- 117
P V+ES KT D KTAD+ QM++ GD P E
Sbjct: 71 PRVMESLKTIDKKTFYKTADVCQMLVSTVDGDLYPPVEEPVATADPKASKKKDKDKEKKF 130
Query: 118 -YRHGLTPPMRDARKRRFRR 136
+ HG+T P+++ RKRRFR+
Sbjct: 131 VWNHGITLPLKNVRKRRFRK 150
>sp|O13701|TAF7_SCHPO Transcription initiation factor TFIID subunit 7
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf7 PE=1 SV=1
Length = 393
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 10/127 (7%)
Query: 19 MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
+EEQ ILR+PP R EN + + F + R+ V G+ + L+DL
Sbjct: 72 IEEQIILRLPPGEDCEYVRKAIENREVGRGADIWVKFKDQRRAVVHVNGH-LYAAKLVDL 130
Query: 79 PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE---------YRHGLTPPMRDA 129
PC++ES K++D + K ADI QM++ E + + Y HGLT PM
Sbjct: 131 PCIIESNKSFDKKVIFKAADICQMLIATERIEHENSVLNTQLKQADYIYPHGLTTPMHWV 190
Query: 130 RKRRFRR 136
R++RFR+
Sbjct: 191 RQKRFRK 197
>sp|Q9VHY5|TAF7_DROME Transcription initiation factor TFIID subunit 7 OS=Drosophila
melanogaster GN=Taf7 PE=1 SV=1
Length = 479
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 20/135 (14%)
Query: 19 MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
+E QFI+RVP +A+ + + N + +D+ L + D R G I + L+DL
Sbjct: 55 LESQFIMRVPKELADTVHEAI--NAGTIKDR-LTIQLDPDLRYGEVRIDDQILYTKLVDL 111
Query: 79 PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE-----------------YRHG 121
P VVES+KT D+ + K+ADI Q+++ +E + + + HG
Sbjct: 112 PTVVESYKTIDNKSFYKSADICQILICKEEREDETEKESPNKNKKKDPNKVDKKYLFPHG 171
Query: 122 LTPPMRDARKRRFRR 136
+TPP ++ RKRRFR+
Sbjct: 172 ITPPCKNVRKRRFRK 186
>sp|Q05021|TAF7_YEAST Transcription initiation factor TFIID subunit 7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF7 PE=1
SV=1
Length = 590
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%), Gaps = 2/34 (5%)
Query: 117 EYRHGLTPPMRDARKRRFRREPDLNPELVQRVEK 150
+Y+HG++PP+ + R RRFRR+ ++P + VEK
Sbjct: 260 DYKHGISPPLYNVRNRRFRRK--MDPNEIDYVEK 291
>sp|Q8NDW4|ZN248_HUMAN Zinc finger protein 248 OS=Homo sapiens GN=ZNF248 PE=2 SV=1
Length = 579
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 16/106 (15%)
Query: 18 LMEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSF-------CEDGRSG--TFVIGN 68
++E+ F + P ++D +L ++ +E+D +L F E+G G TF +G
Sbjct: 68 ILEKGFPSQCHPERKWKVDDVLESSQENEDDHFWELLFHNNKTVSVENGDRGSKTFNLGT 127
Query: 69 DHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPD 114
D PVSL + P +K D C + G +I + PD
Sbjct: 128 D--PVSLRNYP-----YKICDSCEMNLKNISGLIISKKNCSRKKPD 166
>sp|Q8BYH8|CHD9_MOUSE Chromodomain-helicase-DNA-binding protein 9 OS=Mus musculus GN=Chd9
PE=1 SV=2
Length = 2885
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Query: 46 EEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMIMV 105
E D+ L++SFCED +G VI ++ V LP +++ +D L K + Q+
Sbjct: 773 EVDRILEVSFCEDKDTGESVI---YYLVKWCSLPYEDSTWELKEDVDLAKIEEFEQLQAS 829
Query: 106 REPGDSTPDAVEYRHGLTPPMRDARKRRFRRE 137
R PD RH PP +K RE
Sbjct: 830 R------PDT---RHLDRPPSNIWKKIEQSRE 852
>sp|Q82KW8|DXS2_STRAW 1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Streptomyces
avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 /
NCIMB 12804 / NRRL 8165 / MA-4680) GN=dxs2 PE=3 SV=1
Length = 642
Score = 30.4 bits (67), Expect = 6.5, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 73 VSLMDLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVEYRHGLTPPM 126
V + D P VV K A+ IG M ++REPG PD + G PM
Sbjct: 461 VDVDDAPTVVRFSKGAVGPAVPAVGRIGGMDVLREPGTDAPDVLLVSVGALAPM 514
>sp|Q9UUD2|PRP38_SCHPO Pre-mRNA-splicing factor 38 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp38 PE=3 SV=1
Length = 210
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 112 TPDAVEYRHGLTPPMRDARKRRFRREPDLNPELVQRVEKDLLN 154
T D VE L P +RD RK R R ++ + V DLLN
Sbjct: 113 TWDDVEVHQTLEPLLRDYRKLRIRTNSEIRLTYLDEVVDDLLN 155
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,901,487
Number of Sequences: 539616
Number of extensions: 2569174
Number of successful extensions: 6637
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 6601
Number of HSP's gapped (non-prelim): 20
length of query: 177
length of database: 191,569,459
effective HSP length: 110
effective length of query: 67
effective length of database: 132,211,699
effective search space: 8858183833
effective search space used: 8858183833
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)