Query 030427
Match_columns 177
No_of_seqs 120 out of 242
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 22:04:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030427.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030427hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mnta_ a.43.1.1 (A:) Mnt repr 63.5 1.3 9.4E-05 28.9 1.4 22 20-41 4-25 (66)
2 d1vpka2 d.131.1.1 (A:121-243) 42.3 23 0.0016 24.0 5.3 47 25-77 71-117 (123)
3 d1ok7a2 d.131.1.1 (A:123-244) 39.5 12 0.0009 25.2 3.5 44 27-77 73-116 (122)
4 d1v5va1 b.44.2.1 (A:313-401) G 39.4 12 0.00088 24.2 3.3 23 58-80 55-77 (89)
5 d1pj5a1 b.44.2.1 (A:743-830) N 35.4 14 0.001 23.7 3.1 23 58-80 56-78 (88)
6 d1vloa1 b.44.2.1 (A:278-367) G 31.2 19 0.0014 23.1 3.1 24 58-81 57-80 (90)
7 d1wosa1 b.44.2.1 (A:279-361) G 25.4 18 0.0013 22.7 2.1 22 59-80 56-77 (83)
8 d2z1ea2 d.139.1.1 (A:156-334) 20.5 48 0.0035 22.6 3.9 57 20-80 117-175 (179)
9 d1rwza1 d.131.1.2 (A:1-122) Pr 19.1 1.1E+02 0.0078 20.3 5.5 55 18-79 60-114 (122)
10 d1ud9a1 d.131.1.2 (A:1-119) Pr 18.1 1.2E+02 0.0091 19.8 5.6 56 18-80 60-118 (119)
No 1
>d1mnta_ a.43.1.1 (A:) Mnt repressor {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=63.53 E-value=1.3 Score=28.88 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=16.8
Q ss_pred cceeEEecCcchHHHHHHHHhc
Q 030427 20 EEQFILRVPPSVAERIDRLLSE 41 (177)
Q Consensus 20 EeqfILRlP~~~a~~lr~~v~~ 41 (177)
..||.||||.++-+.|...-+.
T Consensus 4 ~~qf~lR~P~~lr~~I~~~Ak~ 25 (66)
T d1mnta_ 4 DPHFNFRMPMEVREKLKFRAEA 25 (66)
T ss_dssp SCCCEEECCHHHHHHHHHTHHH
T ss_pred CccceeeCCHHHHHHHHHHHHH
Confidence 3599999999988888654433
No 2
>d1vpka2 d.131.1.1 (A:121-243) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}
Probab=42.31 E-value=23 Score=23.96 Aligned_cols=47 Identities=11% Similarity=0.318 Sum_probs=33.6
Q ss_pred EecCcchHHHHHHHHhcCCCCCCCCCeeEEEecCCceEEEEECCeecceeecc
Q 030427 25 LRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMD 77 (177)
Q Consensus 25 LRlP~~~a~~lr~~v~~~~~~~~~~~l~i~~~~d~R~~~v~i~~~~y~a~LvD 77 (177)
+=+|......+.+.+.... ...+.|.+ ++.++.|.+++..+..+|+|
T Consensus 71 ~iiP~k~l~el~k~l~~~~----~~~v~i~~--~~~~i~~~~~~~~~~srlie 117 (123)
T d1vpka2 71 FLLSLKSMKEVQNVLDNTT----EPTITVRY--DGRRVSLSTNDVETVMRVVD 117 (123)
T ss_dssp EEEEHHHHHHHHHHHHTCC----CSEEEEEE--CSSEEEEECSSEEEEEECCS
T ss_pred EEEeechhhHHHhhhcccc----cceEEEEE--CCCEEEEEECCEEEEEEeeC
Confidence 3456666777777776542 22455554 68889999999999999887
No 3
>d1ok7a2 d.131.1.1 (A:123-244) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
Probab=39.51 E-value=12 Score=25.21 Aligned_cols=44 Identities=23% Similarity=0.312 Sum_probs=31.8
Q ss_pred cCcchHHHHHHHHhcCCCCCCCCCeeEEEecCCceEEEEECCeecceeecc
Q 030427 27 VPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMD 77 (177)
Q Consensus 27 lP~~~a~~lr~~v~~~~~~~~~~~l~i~~~~d~R~~~v~i~~~~y~a~LvD 77 (177)
+|+..+..+.+.+.+. +..+.|.+. ..++.|.+++..+..+|+|
T Consensus 73 ip~k~l~el~~~l~~~-----~~~v~i~~~--~~~i~f~~~~~~~~srlIe 116 (122)
T d1ok7a2 73 VPRKGVIELMRMLDGG-----DNPLRVQIG--SNNIRAHVGDFIFTSKLVD 116 (122)
T ss_dssp EEHHHHHHHHHTCCCC-----SSEEEEEEE--SSEEEEEETTEEEEEECCC
T ss_pred cchhHHHHHHHhhccC-----cceEEEEec--CCeEEEEECCEEEEEEEec
Confidence 6777666666655432 234777764 5689999999999999886
No 4
>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]}
Probab=39.43 E-value=12 Score=24.19 Aligned_cols=23 Identities=13% Similarity=0.034 Sum_probs=20.2
Q ss_pred CCceEEEEECCeecceeeccCCe
Q 030427 58 DGRSGTFVIGNDHFPVSLMDLPC 80 (177)
Q Consensus 58 d~R~~~v~i~~~~y~a~LvDLP~ 80 (177)
.+....+.++|..+.|+++++|=
T Consensus 55 ~g~~v~v~i~g~~~~a~v~~~Pf 77 (89)
T d1v5va1 55 PGIEIEVEIRGQRKKAVTVTPPF 77 (89)
T ss_dssp TTCEEEEEETTEEEEEEEECSCS
T ss_pred CCCEEEEEECCeEEEEEEECCCC
Confidence 46778899999999999999994
No 5
>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, C-terminal domain {Arthrobacter globiformis [TaxId: 1665]}
Probab=35.41 E-value=14 Score=23.75 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=19.3
Q ss_pred CCceEEEEECCeecceeeccCCe
Q 030427 58 DGRSGTFVIGNDHFPVSLMDLPC 80 (177)
Q Consensus 58 d~R~~~v~i~~~~y~a~LvDLP~ 80 (177)
.+-...|.+.|+.|+|+++++|-
T Consensus 56 ~g~~~~V~~~g~~~~a~v~~~P~ 78 (88)
T d1pj5a1 56 VGDSVDIEYFGRRITATVTEDPL 78 (88)
T ss_dssp TTCEEEEEETTEEEEEEEECSCS
T ss_pred CCCEEEEEECCEEEEEEEEccCC
Confidence 35666888999999999999983
No 6
>d1vloa1 b.44.2.1 (A:278-367) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]}
Probab=31.24 E-value=19 Score=23.14 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.8
Q ss_pred CCceEEEEECCeecceeeccCCee
Q 030427 58 DGRSGTFVIGNDHFPVSLMDLPCV 81 (177)
Q Consensus 58 d~R~~~v~i~~~~y~a~LvDLP~I 81 (177)
-+....+.++|+.+.|.++++|=+
T Consensus 57 ~g~~~~v~v~g~~~~a~v~~~PF~ 80 (90)
T d1vloa1 57 IGETAIVQIRNREMPVKVTKPVFV 80 (90)
T ss_dssp CCSEEEEEETTEEEEEEEECSCCE
T ss_pred CCCEEEEEECCEEEEEEEECCCcc
Confidence 366778999999999999999965
No 7
>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]}
Probab=25.41 E-value=18 Score=22.72 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=17.7
Q ss_pred CceEEEEECCeecceeeccCCe
Q 030427 59 GRSGTFVIGNDHFPVSLMDLPC 80 (177)
Q Consensus 59 ~R~~~v~i~~~~y~a~LvDLP~ 80 (177)
+....+.++|+.+.|+++++|=
T Consensus 56 ~~~~~~~~~g~~~~a~v~~~PF 77 (83)
T d1wosa1 56 DQLGVVFPGGKLVEALVVKKPF 77 (83)
T ss_dssp CEEEEEETTTEEEEEEEECSCS
T ss_pred CeEEEEEECCeEEEEEEECCCC
Confidence 4445566789999999999995
No 8
>d2z1ea2 d.139.1.1 (A:156-334) Hydrogenase expression/formation protein HypE {Thermococcus kodakaraensis [TaxId: 311400]}
Probab=20.46 E-value=48 Score=22.64 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=35.2
Q ss_pred cceeEEecCcchHHHHHHHHhcCCCCCCCCCee-E-EEecCCceEEEEECCeecceeeccCCe
Q 030427 20 EEQFILRVPPSVAERIDRLLSENESSEEDKSLD-L-SFCEDGRSGTFVIGNDHFPVSLMDLPC 80 (177)
Q Consensus 20 EeqfILRlP~~~a~~lr~~v~~~~~~~~~~~l~-i-~~~~d~R~~~v~i~~~~y~a~LvDLP~ 80 (177)
+.++++-+|++.++.+.+.++....+ -.+. | ++. ++..+.|.+++..-..+++|+|-
T Consensus 117 ~g~ll~~v~~~~~~~i~~~l~~~~~g---~~~~vIG~Vt-~~~~~~v~l~~~~g~~r~ld~p~ 175 (179)
T d2z1ea2 117 EGKVVMVVAREYAEEALEAMRKTEKG---RNAAIIGEVI-ADYRGKVLLETGIGGKRFMEPPE 175 (179)
T ss_dssp SSCCEEEECGGGHHHHHHHHHTSSTT---TTCEEEEEEE-SSSTTCEEEECTTSCEEECCCSS
T ss_pred ccceeeEeCHHHHHHHHHHHHhCCCC---CCeEEEEEEE-cCCCCEEEEEcCCCCEEECCCCC
Confidence 34789999999988888877643211 1121 1 244 34445566666555667788873
No 9
>d1rwza1 d.131.1.2 (A:1-122) Proliferating cell nuclear antigen (PCNA) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=19.15 E-value=1.1e+02 Score=20.26 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=37.0
Q ss_pred cccceeEEecCcchHHHHHHHHhcCCCCCCCCCeeEEEecCCceEEEEECCeecceeeccCC
Q 030427 18 LMEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDLP 79 (177)
Q Consensus 18 ~~EeqfILRlP~~~a~~lr~~v~~~~~~~~~~~l~i~~~~d~R~~~v~i~~~~y~a~LvDLP 79 (177)
.+++...+-+. .+.+.++++... .++.+.+..+ ++....+.++|..|.-+|+|.=
T Consensus 60 ~~~~~~~iGv~---~~~l~kilk~~~---~~d~l~l~~~-~~~~l~i~~~~~~f~l~LlD~~ 114 (122)
T d1rwza1 60 NIDEEKTIGVD---MDRIFDISKSIS---TKDLVELIVE-DESTLKVKFGSVEYKVALIDPS 114 (122)
T ss_dssp EESSCEEEEEE---HHHHHHHHTTSC---TTSEEEEEES-SSSEEEEEETTEEEEEECBCGG
T ss_pred ecCCCEEEEEE---HHHHHHHHhhCC---CCCEEEEEEc-CCCEEEEEEeccEEEEeCcccc
Confidence 34444444443 456677776654 3456777766 5567889999999999988853
No 10
>d1ud9a1 d.131.1.2 (A:1-119) Proliferating cell nuclear antigen (PCNA) {Archaeon Sulfolobus tokodaii [TaxId: 111955]}
Probab=18.11 E-value=1.2e+02 Score=19.79 Aligned_cols=56 Identities=11% Similarity=0.176 Sum_probs=35.1
Q ss_pred cccceeEEecCcchHHHHHHHHhcCCCCCCCCCeeEEEecCCceEEEEECC---eecceeeccCCe
Q 030427 18 LMEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGN---DHFPVSLMDLPC 80 (177)
Q Consensus 18 ~~EeqfILRlP~~~a~~lr~~v~~~~~~~~~~~l~i~~~~d~R~~~v~i~~---~~y~a~LvDLP~ 80 (177)
.+++.+.+-+. .+.+.++++... .++.+.+..+ ++....+.+.| +.|.-.|+|+++
T Consensus 60 ~~~~~~~igv~---~~~l~kilk~~~---~~d~l~l~~~-~~~~l~i~~~~~~~r~f~l~lidi~~ 118 (119)
T d1ud9a1 60 DVPEEFKFGFN---TQYMSKLLKAAK---RKEEIIIDAD-SPEVVKLTLSGALNRVFNVNNIEVLP 118 (119)
T ss_dssp ECSSCEEEEEE---HHHHHHHHTTCC---SCCCEEEEEE-ETTEEEEEECSSSCEEEEEECCCCCC
T ss_pred ccCCCEEEEEE---HHHHHHHHhhCC---CCCEEEEEeC-CCCEEEEEEECCceEEEEEEeecccC
Confidence 34455555554 445666676654 3457877765 45666777764 467888888865
Done!